BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696743.2.1
(977 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK111504.1| Oryza sativa (japonica cultivar-group) cDNA... 658 0.0
dbj|AK111587.1| Oryza sativa (japonica cultivar-group) cDNA... 658 0.0
dbj|AK111996.1| Oryza sativa (japonica cultivar-group) cDNA... 658 0.0
ref|XM_473529.1| Oryza sativa (japonica cultivar-group), p... 654 0.0
gb|CB644930.1|CB644930 OSJNEb06F17.f OSJNEb Oryza sativa (j... 549 e-153
gb|CB664150.1|CB664150 OSJNEd09L10.r OSJNEd Oryza sativa (j... 513 e-143
gb|CB670123.1|CB670123 OSJNEe03A22.r OSJNEe Oryza sativa (j... 509 e-142
dbj|AK111553.1| Oryza sativa (japonica cultivar-group) cDNA... 484 e-134
dbj|AK112025.1| Oryza sativa (japonica cultivar-group) cDNA... 484 e-134
gb|CF312777.1|CF312777 ABF--08-K18.b1 ABF3-overexpressing t... 446 e-122
gb|CB670855.1|CB670855 OSJNEe04C12.r OSJNEe Oryza sativa (j... 438 e-120
gb|CB653344.1|CB653344 OSJNEc04E11.r OSJNEc Oryza sativa (j... 385 e-104
gb|CF312778.1|CF312778 ABF--08-K18.g1 ABF3-overexpressing t... 369 2e-099
gb|AU183854.1|AU183854 AU183854 Rice immature leaf includin... 321 4e-085
gb|CB665755.1|CB665755 OSJNEd12F14.r OSJNEd Oryza sativa (j... 295 2e-077
gb|AU029884.1|AU029884 AU029884 Rice cDNA from immature lea... 270 1e-069
gb|CB667383.1|CB667383 OSJNEd14L01.f OSJNEd Oryza sativa (j... 266 2e-068
dbj|AK111500.1| Oryza sativa (japonica cultivar-group) cDNA... 214 7e-053
dbj|AK122176.1| Oryza sativa (japonica cultivar-group) cDNA... 206 2e-050
dbj|AK111833.1| Oryza sativa (japonica cultivar-group) cDNA... 204 6e-050
ref|XM_468547.1| Oryza sativa (japonica cultivar-group), mRNA 192 2e-046
gb|C29031.1|C29031 C29031 Rice callus cDNA Oryza sativa (ja... 186 2e-044
dbj|AB081951.1| Oryza sativa (japonica cultivar-group) OsAG... 184 6e-044
dbj|AK103279.1| Oryza sativa (japonica cultivar-group) cDNA... 184 6e-044
gb|AACV01010310.1| Oryza sativa (japonica cultivar-group) c... 176 1e-041
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 176 1e-041
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 176 1e-041
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 176 1e-041
emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromoso... 176 1e-041
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 176 1e-041
gb|AU030923.1|AU030923 AU030923 Rice cDNA from immature lea... 153 2e-034
dbj|AK102911.1| Oryza sativa (japonica cultivar-group) cDNA... 141 8e-031
gb|AU225409.1|AU225409 AU225409 Oryza sativa Koshihikari pi... 131 8e-028
gb|CB649652.1|CB649652 OSJNEb13L12.f OSJNEb Oryza sativa (j... 125 5e-026
gb|AU101021.1|AU101021 AU101021 Rice callus Oryza sativa (j... 123 2e-025
dbj|AP004188.3| Oryza sativa (japonica cultivar-group) geno... 119 3e-024
gb|AACV01005121.1| Oryza sativa (japonica cultivar-group) c... 119 3e-024
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 119 3e-024
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 119 3e-024
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 119 3e-024
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 119 3e-024
gb|AU091754.1|AU091754 AU091754 Rice callus Oryza sativa (j... 115 5e-023
gb|CA999687.1|CA999687 S234I_A02 Rice cold stress germinati... 115 5e-023
gb|CB641950.1|CB641950 OSJNEb01N22.r OSJNEb Oryza sativa (j... 115 5e-023
gb|CB671136.1|CB671136 OSJNEe04I24.r OSJNEe Oryza sativa (j... 115 5e-023
dbj|AB081950.1| Oryza sativa (japonica cultivar-group) OsPN... 115 5e-023
gb|CB641981.1|CB641981 OSJNEb01O19.r OSJNEb Oryza sativa (j... 107 1e-020
gb|AU101467.1|AU101467 AU101467 Rice immature leaf includin... 101 7e-019
gb|CF327924.1|CF327924 NACL--02-J19.b1 Rice callus plasmid ... 101 7e-019
gb|CF327925.1|CF327925 NACL--02-J19.g1 Rice callus plasmid ... 101 7e-019
gb|AU182303.1|AU182303 AU182303 Rice panicle at flowering s... 88 1e-014
gb|CF324480.1|CF324480 HDN--06-K11.g1 OsHDAC1-overexpressin... 88 1e-014
gb|AU030917.1|AU030917 AU030917 Rice cDNA from immature lea... 86 4e-014
gb|CA755233.1|CA755233 BR030016000_PLATE_B01_2_010.ab1 OA O... 84 2e-013
dbj|AG207806.1| Oryza sativa (japonica cultivar-group) DNA,... 80 3e-012
dbj|AG208868.1| Oryza sativa (japonica cultivar-group) DNA,... 80 3e-012
dbj|AG209441.1| Oryza sativa (japonica cultivar-group) DNA,... 80 3e-012
dbj|AG021353.1| Oryza sativa (japonica cultivar-group) DNA,... 80 3e-012
dbj|AG023794.1| Oryza sativa (japonica cultivar-group) DNA,... 80 3e-012
dbj|AP004813.1| Oryza sativa (japonica cultivar-group) chro... 80 3e-012
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 80 3e-012
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
gb|AACV01014978.1| Oryza sativa (japonica cultivar-group) c... 80 3e-012
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 80 3e-012
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 80 3e-012
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
gb|AU075754.1|AU075754 AU075754 Rice cDNA from immature lea... 78 1e-011
ref|NM_185035.1| Oryza sativa (japonica cultivar-group), mRNA 76 4e-011
dbj|AG208112.1| Oryza sativa (japonica cultivar-group) DNA,... 74 2e-010
dbj|AG208421.1| Oryza sativa (japonica cultivar-group) DNA,... 74 2e-010
dbj|AG211809.1| Oryza sativa (japonica cultivar-group) DNA,... 74 2e-010
dbj|AG215017.1| Oryza sativa (japonica cultivar-group) DNA,... 74 2e-010
dbj|AG206147.1| Oryza sativa (japonica cultivar-group) DNA,... 74 2e-010
gb|AU165901.1|AU165901 AU165901 Rice cDNA from immature lea... 74 2e-010
gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 ... 74 2e-010
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
gb|AACV01005685.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
gb|AACV01008101.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 74 2e-010
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 74 2e-010
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
dbj|AP003986.1| Oryza sativa (japonica cultivar-group) chro... 68 1e-008
dbj|AK060277.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
dbj|AP004236.3| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 68 1e-008
gb|AACV01014478.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
ref|XM_469924.1| Oryza sativa (japonica cultivar-group), mRNA 68 1e-008
dbj|AG025273.1| Oryza sativa (japonica cultivar-group) DNA,... 66 4e-008
dbj|AG206476.1| Oryza sativa (japonica cultivar-group) DNA,... 66 4e-008
gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09... 66 4e-008
gb|AACV01008058.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09... 58 9e-006
gb|AACV01007652.1| Oryza sativa (japonica cultivar-group) c... 58 9e-006
ref|XM_469311.1| Oryza sativa (japonica cultivar-group), mRNA 58 9e-006
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 58 9e-006
gb|AU165900.1|AU165900 AU165900 Rice cDNA from immature lea... 56 4e-005
dbj|AK100285.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
ref|XM_476934.1| Oryza sativa (japonica cultivar-group), mRNA 56 4e-005
ref|XM_469312.1| Oryza sativa (japonica cultivar-group), mRNA 54 1e-004
dbj|AG211218.1| Oryza sativa (japonica cultivar-group) DNA,... 52 6e-004
dbj|AB155171.1| Oryza sativa (japonica cultivar-group) DNA,... 52 6e-004
gb|AC135597.5| Oryza sativa chromosome 3 BAC OSJNBa0034E08 ... 52 6e-004
gb|AACV01007049.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
ref|XM_468898.1| Oryza sativa (japonica cultivar-group), mRNA 52 6e-004
ref|NT_107184.1| Oryza sativa (japonica cultivar-group) 52 6e-004
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
ref|XM_478040.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.009
gb|CB671414.1|CB671414 OSJNEe04P24.r OSJNEe Oryza sativa (j... 46 0.036
dbj|AK106247.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.036
dbj|AP004113.3| Oryza sativa (japonica cultivar-group) geno... 46 0.036
dbj|AP005071.3| Oryza sativa (japonica cultivar-group) geno... 46 0.036
gb|AACV01003428.1| Oryza sativa (japonica cultivar-group) c... 46 0.036
ref|XM_464271.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.036
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 46 0.036
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
dbj|AG208794.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.14
dbj|AK069685.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AP003806.3| Oryza sativa (japonica cultivar-group) geno... 44 0.14
dbj|AP004347.5| Oryza sativa (japonica cultivar-group) geno... 44 0.14
gb|AACV01016147.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 44 0.14
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 44 0.14
>dbj|AK111504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B21, full
insert sequence
Length = 3746
Score = 658 bits (332), Expect = 0.0
Identities = 608/698 (87%), Gaps = 4/698 (0%)
Strand = Plus / Minus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 3531 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 3472
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 3471 gctacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgtt 3415
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 3414 gcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagct 3355
Query: 438 cggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcac 497
|||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 3354 cggaaggctgccagatgagcatagtacgcaggaggcacaattgatacagagcgagtgcac 3295
Query: 498 ctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttg 557
|| ||||||||||| ||||||||||| ||||| ||||||||| | || || |||||||||
Sbjct: 3294 cttgcatacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttg 3235
Query: 558 ttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatgg 617
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 3234 ttctcatcccacagaacatgataatgagcaggacggcttgttccctgtatgccagcatgg 3175
Query: 618 ctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgccc 677
|| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 3174 ctacacaggtagaaatcaaactcggttggatggcaaatctttgagtcaacaacagttcca 3115
Query: 678 ggcagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaac 737
||||| ||||| ||||||||||| ||| |||||| || |||||||||||| ||||||||
Sbjct: 3114 ggcagaatgtttccacttctatcaacagtacgctggtcgttgtgattattagcaaacaac 3055
Query: 738 ctggtgtgatgacgcttctggaccacgacaaaagtaactggaggctggtaatcagactcc 797
|| |||||||| |||||||||||||| ||||| |||||||||||||| || | | |||
Sbjct: 3054 cttgtgtgatgccgcttctggaccaccacaaaggtaactggaggctgatagttgggttcc 2995
Query: 798 aatgatgcacaggcctttctaatggcatcaagttcgtacaacagaacttggtagaactgt 857
| |||||||| |||||||||||||||||||| || ||||||| |||||| || |||||
Sbjct: 2994 agggatgcacaagcctttctaatggcatcaagctcatacaacaaaacttgataaaactgc 2935
Query: 858 ccctcactgacaccatccctgtagaatatgatcctcttgggtttttgtccagtcgccctc 917
||||| ||||||||||||||||| ||||| ||||||| ||||| |||||||| ||||||
Sbjct: 2934 ccctcgctgacaccatccctgtaaaatattatcctctgaggtttctgtccagtagccctc 2875
Query: 918 cagaaagaaatgagaaggttccctaatcatgccaccag 955
|||||||||||||| | ||| | |||||||||||||
Sbjct: 2874 ttgaaagaaatgagaa-gctccttgatcatgccaccag 2838
>dbj|AK111587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091C01, full
insert sequence
Length = 3746
Score = 658 bits (332), Expect = 0.0
Identities = 608/698 (87%), Gaps = 4/698 (0%)
Strand = Plus / Minus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 3446 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 3387
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 3386 gctacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgtt 3330
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 3329 gcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagct 3270
Query: 438 cggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcac 497
|||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 3269 cggaaggctgccagatgagcatagtacgcaggaggcacaattgatacagagcgagtgcac 3210
Query: 498 ctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttg 557
|| ||||||||||| ||||||||||| ||||| ||||||||| | || || |||||||||
Sbjct: 3209 cttgcatacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttg 3150
Query: 558 ttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatgg 617
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 3149 ttctcatcccacagaacatgataatgagcaggacggcttgttccctgtatgccagcatgg 3090
Query: 618 ctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgccc 677
|| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 3089 ctacacaggtagaaatcaaactcggttggatggcaaatctttgagtcaacaacagttcca 3030
Query: 678 ggcagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaac 737
||||| ||||| ||||||||||| ||| |||||| || |||||||||||| ||||||||
Sbjct: 3029 ggcagaatgtttccacttctatcaacagtacgctggtcgttgtgattattagcaaacaac 2970
Query: 738 ctggtgtgatgacgcttctggaccacgacaaaagtaactggaggctggtaatcagactcc 797
|| |||||||| |||||||||||||| ||||| |||||||||||||| || | | |||
Sbjct: 2969 cttgtgtgatgccgcttctggaccaccacaaaggtaactggaggctgatagttgggttcc 2910
Query: 798 aatgatgcacaggcctttctaatggcatcaagttcgtacaacagaacttggtagaactgt 857
| |||||||| |||||||||||||||||||| || ||||||| |||||| || |||||
Sbjct: 2909 agggatgcacaagcctttctaatggcatcaagctcatacaacaaaacttgataaaactgc 2850
Query: 858 ccctcactgacaccatccctgtagaatatgatcctcttgggtttttgtccagtcgccctc 917
||||| ||||||||||||||||| ||||| ||||||| ||||| |||||||| ||||||
Sbjct: 2849 ccctcgctgacaccatccctgtaaaatattatcctctgaggtttctgtccagtagccctc 2790
Query: 918 cagaaagaaatgagaaggttccctaatcatgccaccag 955
|||||||||||||| | ||| | |||||||||||||
Sbjct: 2789 ttgaaagaaatgagaa-gctccttgatcatgccaccag 2753
>dbj|AK111996.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-A12, full
insert sequence
Length = 3641
Score = 658 bits (332), Expect = 0.0
Identities = 608/698 (87%), Gaps = 4/698 (0%)
Strand = Plus / Minus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 3348 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 3289
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 3288 gctacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgtt 3232
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 3231 gcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagct 3172
Query: 438 cggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcac 497
|||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 3171 cggaaggctgccagatgagcatagtacgcaggaggcacaattgatacagagcgagtgcac 3112
Query: 498 ctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttg 557
|| ||||||||||| ||||||||||| ||||| ||||||||| | || || |||||||||
Sbjct: 3111 cttgcatacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttg 3052
Query: 558 ttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatgg 617
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 3051 ttctcatcccacagaacatgataatgagcaggacggcttgttccctgtatgccagcatgg 2992
Query: 618 ctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgccc 677
|| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 2991 ctacacaggtagaaatcaaactcggttggatggcaaatctttgagtcaacaacagttcca 2932
Query: 678 ggcagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaac 737
||||| ||||| ||||||||||| ||| |||||| || |||||||||||| ||||||||
Sbjct: 2931 ggcagaatgtttccacttctatcaacagtacgctggtcgttgtgattattagcaaacaac 2872
Query: 738 ctggtgtgatgacgcttctggaccacgacaaaagtaactggaggctggtaatcagactcc 797
|| |||||||| |||||||||||||| ||||| |||||||||||||| || | | |||
Sbjct: 2871 cttgtgtgatgccgcttctggaccaccacaaaggtaactggaggctgatagttgggttcc 2812
Query: 798 aatgatgcacaggcctttctaatggcatcaagttcgtacaacagaacttggtagaactgt 857
| |||||||| |||||||||||||||||||| || ||||||| |||||| || |||||
Sbjct: 2811 agggatgcacaagcctttctaatggcatcaagctcatacaacaaaacttgataaaactgc 2752
Query: 858 ccctcactgacaccatccctgtagaatatgatcctcttgggtttttgtccagtcgccctc 917
||||| ||||||||||||||||| ||||| ||||||| ||||| |||||||| ||||||
Sbjct: 2751 ccctcgctgacaccatccctgtaaaatattatcctctgaggtttctgtccagtagccctc 2692
Query: 918 cagaaagaaatgagaaggttccctaatcatgccaccag 955
|||||||||||||| | ||| | |||||||||||||
Sbjct: 2691 ttgaaagaaatgagaa-gctccttgatcatgccaccag 2655
>ref|XM_473529.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3306
Score = 654 bits (330), Expect = 0.0
Identities = 606/696 (87%), Gaps = 4/696 (0%)
Strand = Plus / Minus
Query: 260 ttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacagc 319
||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| || ||
Sbjct: 3306 ttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacggc 3247
Query: 320 aacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtcgt 379
|||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| || |
Sbjct: 3246 tacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgttgc 3190
Query: 380 agcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagctcg 439
||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||||
Sbjct: 3189 agctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagctcg 3130
Query: 440 gaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcacct 499
|||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||||
Sbjct: 3129 gaaggctgccagatgagcatagtacgcaggaggcacaattgatacagagcgagtgcacct 3070
Query: 500 ggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgtt 559
||||||||||| ||||||||||| ||||| ||||||||| | || || |||||||||||
Sbjct: 3069 tgcatacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttgtt 3010
Query: 560 ctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatggct 619
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 3009 ctcatcccacagaacatgataatgagcaggacggcttgttccctgtatgccagcatggct 2950
Query: 620 gcacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgcccgg 679
|||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 2949 acacaggtagaaatcaaactcggttggatggcaaatctttgagtcaacaacagttccagg 2890
Query: 680 cagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaacct 739
||| ||||| ||||||||||| ||| |||||| || |||||||||||| ||||||||||
Sbjct: 2889 cagaatgtttccacttctatcaacagtacgctggtcgttgtgattattagcaaacaacct 2830
Query: 740 ggtgtgatgacgcttctggaccacgacaaaagtaactggaggctggtaatcagactccaa 799
|||||||| |||||||||||||| ||||| |||||||||||||| || | | ||||
Sbjct: 2829 tgtgtgatgccgcttctggaccaccacaaaggtaactggaggctgatagttgggttccag 2770
Query: 800 tgatgcacaggcctttctaatggcatcaagttcgtacaacagaacttggtagaactgtcc 859
|||||||| |||||||||||||||||||| || ||||||| |||||| || ||||| ||
Sbjct: 2769 ggatgcacaagcctttctaatggcatcaagctcatacaacaaaacttgataaaactgccc 2710
Query: 860 ctcactgacaccatccctgtagaatatgatcctcttgggtttttgtccagtcgccctcca 919
||| ||||||||||||||||| ||||| ||||||| ||||| |||||||| ||||||
Sbjct: 2709 ctcgctgacaccatccctgtaaaatattatcctctgaggtttctgtccagtagccctctt 2650
Query: 920 gaaagaaatgagaaggttccctaatcatgccaccag 955
|||||||||||||| | ||| | |||||||||||||
Sbjct: 2649 gaaagaaatgagaa-gctccttgatcatgccaccag 2615
>gb|CB644930.1|CB644930 OSJNEb06F17.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06F17 5', mRNA sequence
Length = 788
Score = 549 bits (277), Expect = e-153
Identities = 465/527 (88%), Gaps = 3/527 (0%)
Strand = Plus / Plus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 265 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 324
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 325 gctacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgtt 381
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 382 gcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagct 441
Query: 438 cggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcac 497
|||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 442 cggaaggctgccagatgagcatagtacgcaggaggcacaattgatacagagcgagtgcac 501
Query: 498 ctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttg 557
|| ||||||||||| ||||||||||| ||||| ||||||||| | || || |||||||||
Sbjct: 502 cttgcatacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttg 561
Query: 558 ttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatgg 617
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 562 ttctcatcccacagaacatgataatgagcaggacggcttgttccctgtatgccagcatgg 621
Query: 618 ctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgccc 677
|| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 622 ctacacaggtagaaatcaaactcggttggatggcaaatctttgagtcaacaacagttcca 681
Query: 678 ggcagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaac 737
||||| ||||| ||||||||||| ||| |||||| || |||||||||||| ||||||||
Sbjct: 682 ggcagaatgtttccacttctatcaacagtacgctggtcgttgtgattattagcaaacaac 741
Query: 738 ctggtgtgatgacgcttctggaccacgacaaaagtaactggaggctg 784
|| |||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 742 cttgtgtgatgccgcttctggaccaccacaaaggtaactggaggctg 788
>gb|CB664150.1|CB664150 OSJNEd09L10.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd09L10 3', mRNA sequence
Length = 771
Score = 513 bits (259), Expect = e-143
Identities = 441/501 (88%), Gaps = 3/501 (0%)
Strand = Plus / Plus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 274 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 333
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 334 gctacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgtt 390
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 391 gcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagct 450
Query: 438 cggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcac 497
|||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 451 cggaaggctgccagatgagcatagtacgcaggaggcacaattgatacagagcgagtgcac 510
Query: 498 ctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttg 557
|| ||||||||||| ||||||||||| ||||| ||||||||| | || || |||||||||
Sbjct: 511 cttgcatacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttg 570
Query: 558 ttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatgg 617
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 571 ttctcatcccacagaacatgataatgagcaggacggcttgttccctgtatgccagcatgg 630
Query: 618 ctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgccc 677
|| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 631 ctacacaggtagaaatcaaactcggttggatggcaaatctttgagtcaacaacagttcca 690
Query: 678 ggcagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaac 737
||||| ||||| ||||||||||| ||| |||||| || |||||||||||| ||||||||
Sbjct: 691 ggcagaatgtttccacttctatcaacagtacgctggtcgttgtgattattagcaaacaac 750
Query: 738 ctggtgtgatgacgcttctgg 758
|| |||||||| |||||||||
Sbjct: 751 cttgtgtgatgccgcttctgg 771
>gb|CB670123.1|CB670123 OSJNEe03A22.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03A22 3', mRNA sequence
Length = 744
Score = 509 bits (257), Expect = e-142
Identities = 442/503 (87%), Gaps = 3/503 (0%)
Strand = Plus / Plus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||| ||
Sbjct: 245 tcttagcagtaaaacatgacacgcttcacgttttccttgaaagcaggtaaaggcctgacg 304
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||| ||| |||||||||| ||
Sbjct: 305 gctacatttccagcaac---cctggcgctgcgcacacctgggggaaggccacggctcgtt 361
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 362 gcagctccactcgccattgatccactgtcaaatgtctctggctccatgtaaaagcgagct 421
Query: 438 cggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcac 497
|||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 422 cggaaggctgccagatgagcatagtacgcaggaggcacaattgatacagagcgagtgcac 481
Query: 498 ctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttg 557
|| ||||||||||| ||||||||||| ||||| ||||||||| | || || |||||||||
Sbjct: 482 cttgcatacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttg 541
Query: 558 ttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatgg 617
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 542 ttctcatcccacagaacatgataatgagcaggacggcttgttccctgtatgccagcatgg 601
Query: 618 ctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgccc 677
|| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 602 ctacacaggtagaaatcaaactcggttggatggcaaatctttgagtcaacaacagttcca 661
Query: 678 ggcagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaac 737
||||| ||||| ||||||||||| ||| |||||| || |||||||||||| ||||||||
Sbjct: 662 ggcagaatgtttccacttctatcaacagtacgctggtcgttgtgattattagcaaacaac 721
Query: 738 ctggtgtgatgacgcttctggac 760
|| |||||||| |||||||||||
Sbjct: 722 cttgtgtgatgccgcttctggac 744
>dbj|AK111553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050D21, full
insert sequence
Length = 3747
Score = 484 bits (244), Expect = e-134
Identities = 454/524 (86%)
Strand = Plus / Minus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||| |||||||||||||| |||||||| || || || ||||| ||||| |||||||||
Sbjct: 3286 gtatccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcagga 3227
Query: 471 ggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgaga 530
|||||||||||||| || || |||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 3226 ggaacgattgatacggaacgggtgcaccttgcataggtgtagcacaagttgtttgtcaga 3167
Query: 531 gtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcagga 590
|||||||| |||||||| || || ||||||||||||||||||||||||||||| |||||
Sbjct: 3166 gtttgcaaaccatcagcagtgaacttgttctcatcccacagaacatgataatgtgcaggg 3107
Query: 591 cggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatgg 650
|| ||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 3106 cgacttgttccctgaatgcccgcatggctacacaggtagaaatcaaactcagtaggatgg 3047
Query: 651 caaatctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgc 710
|| |||||||| || ||||| ||||| || ||||| || |||||||| || ||| |||
Sbjct: 3046 catatctttgaatcaaccacggtgcctggtagtatatttccacttctgtcaacagtgcgc 2987
Query: 711 tgatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaa 770
|| || ||||| |||||| |||||| ||| ||||||||||||||||||||||| |||||
Sbjct: 2986 tggtccttgtggttattagcaaacagccttgtgtgatgacgcttctggaccaccacaaag 2927
Query: 771 gtaactggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagt 830
||||| || ||||| ||||| | ||||| |||||||| ||||||||||||||||||||
Sbjct: 2926 gtaacgggtggctgataatcggcttccaaagatgcacatgcctttctaatggcatcaagc 2867
Query: 831 tcgtacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatc 890
|| || |||||||| || || |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 2866 tcataaaacagaacctgataaaactgtccttcactgacaccatccctgtaaaatataatc 2807
Query: 891 ctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||| |||||| |||||||| |||||| |||||||||||||||
Sbjct: 2806 ctctggggtttctgtccagttgccctcttgaaagaaatgagaag 2763
Score = 46.1 bits (23), Expect = 0.036
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
||||||||||||||||||| || || || |||||||| || |||| | ||||| ||||
Sbjct: 3438 cttagcagtagaacatgacacgtttgacattttccttcagatcaggaagcggccttacag 3379
Query: 319 caacatt 325
|||||||
Sbjct: 3378 caacatt 3372
>dbj|AK112025.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C05, full
insert sequence
Length = 2043
Score = 484 bits (244), Expect = e-134
Identities = 454/524 (86%)
Strand = Plus / Minus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||| |||||||||||||| |||||||| || || || ||||| ||||| |||||||||
Sbjct: 1725 gtatccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcagga 1666
Query: 471 ggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgaga 530
|||||||||||||| || || |||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 1665 ggaacgattgatacggaacgggtgcaccttgcataggtgtagcacaagttgtttgtcaga 1606
Query: 531 gtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcagga 590
|||||||| |||||||| || || ||||||||||||||||||||||||||||| |||||
Sbjct: 1605 gtttgcaaaccatcagcagtgaacttgttctcatcccacagaacatgataatgtgcaggg 1546
Query: 591 cggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatgg 650
|| ||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 1545 cgacttgttccctgaatgcccgcatggctacacaggtagaaatcaaactcagtaggatgg 1486
Query: 651 caaatctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgc 710
|| |||||||| || ||||| ||||| || ||||| || |||||||| || ||| |||
Sbjct: 1485 catatctttgaatcaaccacggtgcctggtagtatatttccacttctgtcaacagtgcgc 1426
Query: 711 tgatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaa 770
|| || ||||| |||||| |||||| ||| ||||||||||||||||||||||| |||||
Sbjct: 1425 tggtccttgtggttattagcaaacagccttgtgtgatgacgcttctggaccaccacaaag 1366
Query: 771 gtaactggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagt 830
||||| || ||||| ||||| | ||||| |||||||| ||||||||||||||||||||
Sbjct: 1365 gtaacgggtggctgataatcggcttccaaagatgcacatgcctttctaatggcatcaagc 1306
Query: 831 tcgtacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatc 890
|| || |||||||| || || |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 1305 tcataaaacagaacctgataaaactgtccttcactgacaccatccctgtaaaatataatc 1246
Query: 891 ctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||| |||||| |||||||| |||||| |||||||||||||||
Sbjct: 1245 ctctggggtttctgtccagttgccctcttgaaagaaatgagaag 1202
Score = 46.1 bits (23), Expect = 0.036
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
||||||||||||||||||| || || || |||||||| || |||| | ||||| ||||
Sbjct: 1877 cttagcagtagaacatgacacgtttgacattttccttcagatcaggaagcggccttacag 1818
Query: 319 caacatt 325
|||||||
Sbjct: 1817 caacatt 1811
>gb|CF312777.1|CF312777 ABF--08-K18.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-K18, mRNA sequence
Length = 602
Score = 446 bits (225), Expect = e-122
Identities = 420/481 (87%), Gaps = 3/481 (0%)
Strand = Plus / Minus
Query: 477 attgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgc 536
|||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||
Sbjct: 596 attgatacagagcgagtgcaccttgcatacgtgtagcacaagttgttcgtgagggtttgc 537
Query: 537 aacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacggctt 596
||| | || || ||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 536 aactcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggcct 477
Query: 597 gttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatc 656
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 476 gttccctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggcaaatc 417
Query: 657 tttgagtccaccaca-gtgcccggcagtatgttgccacttctatcggcagcacgctgatc 715
|||||| | || ||| || || ||||| ||||| ||||||||||| ||| |||||| ||
Sbjct: 416 tttgagacaacaacangttccaggcagaatgtttccacttctatcaacagtacgctggtc 357
Query: 716 attgtgattattaacaaacaa-cctggtgtgatgacgcttctggaccacgacaaaagtaa 774
|||||||||||| ||||||| ||| |||||||| |||||||||||||| ||||| ||||
Sbjct: 356 gttgtgattattagcaaacaacccttgtgtgatgccgcttctggaccaccacaaaggtaa 297
Query: 775 ctggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcgt 834
|||||||||| || | | |||| |||||||| |||||||||||||||||||| || |
Sbjct: 296 ctggaggctgatagttgggttccagggatgcacaagcctttctaatggcatcaagctcat 237
Query: 835 acaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcctct 894
|||||| |||||| || ||||| ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 236 acaacaaaacttgataaaactgcccctcgctgacaccatccctgtaaaatattatcctct 177
Query: 895 tgggtttttgtccagtcgccctccagaaagaaatgagaaggttccctaatcatgccacca 954
||||| |||||||| |||||| |||||||||||||| | ||| | ||||||||||||
Sbjct: 176 gaggtttctgtccagtagccctcttgaaagaaatgagaa-gctccttgatcatgccacca 118
Query: 955 g 955
|
Sbjct: 117 g 117
>gb|CB670855.1|CB670855 OSJNEe04C12.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04C12 3', mRNA sequence
Length = 701
Score = 438 bits (221), Expect = e-120
Identities = 388/443 (87%), Gaps = 3/443 (0%)
Strand = Plus / Plus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||| ||
Sbjct: 261 tcttagcagtaaaacatgacacgcttcacgttttccttgaaagcaggtagaggcctgacg 320
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 321 gctacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgtt 377
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 378 gcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagct 437
Query: 438 cggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcac 497
||||||||||||| |||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 438 cggaaggctgccaaatgagcatagtacgcaggaggcacaattgatacagagcgagtgcac 497
Query: 498 ctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttg 557
|| ||||||||||| ||||||||||| ||||| ||||||||| | || || |||||||||
Sbjct: 498 cttgcatacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttg 557
Query: 558 ttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatgg 617
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 558 ttctcatcccacagaacatgataatgagcaggacggcttgttccctgtatgccagcatgg 617
Query: 618 ctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgccc 677
|| |||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 618 ctacacaggtaaaaatcaaactcggttggatggcaaatctttgagtcaacaacagttcca 677
Query: 678 ggcagtatgttgccacttctatc 700
||||| ||||| |||||||||||
Sbjct: 678 ggcagaatgtttccacttctatc 700
>gb|CB653344.1|CB653344 OSJNEc04E11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04E11 3', mRNA sequence
Length = 825
Score = 385 bits (194), Expect = e-104
Identities = 375/434 (86%), Gaps = 1/434 (0%)
Strand = Plus / Plus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||| |||||||||||||| |||||||| || || || ||||| ||||| |||||||||
Sbjct: 382 gtatccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcagga 441
Query: 471 ggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgaga 530
|||||||||||||| || || |||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 442 ggaacgattgatacggaacgggtgcaccttgcataggtgtagcacaagttgtttgtcaga 501
Query: 531 gtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcagga 590
|||||||| |||||||| || || ||||||||||||||||||||||||||||| |||||
Sbjct: 502 gtttgcaaaccatcagcagtgaacttgttctcatcccacagaacatgataatgtgcaggg 561
Query: 591 cggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatgg 650
|| ||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 562 cgacttgttccctgaatgcccgcatggctacacaggtagaaatcaaactcagtaggatgg 621
Query: 651 caaatctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgc 710
|| |||||||| || ||||| ||||| || ||||| || |||||||| || ||| |||
Sbjct: 622 catatctttgaatcaaccacggtgcctggtagtatatttccacttctgtcaacagtgcgc 681
Query: 711 tgatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaa 770
|| || ||||| |||||| |||||| ||| ||||||||||||||||||||||| |||||
Sbjct: 682 tggtccttgtggttattagcaaacagccttgtgtgatgacgcttctggaccaccacaaag 741
Query: 771 gtaactggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagt 830
||||| || ||||| ||||| | ||||| |||||||| ||||||||||||||||||||
Sbjct: 742 gtaacgggtggctgataatcggcttccaa-gatgcacatgcctttctaatggcatcaagc 800
Query: 831 tcgtacaacagaac 844
|| || ||||||||
Sbjct: 801 tcataaaacagaac 814
Score = 46.1 bits (23), Expect = 0.036
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
||||||||||||||||||| || || || |||||||| || |||| | ||||| ||||
Sbjct: 230 cttagcagtagaacatgacacgtttgacattttccttcagatcaggaagcggccttacag 289
Query: 319 caacatt 325
|||||||
Sbjct: 290 caacatt 296
>gb|CF312778.1|CF312778 ABF--08-K18.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-K18, mRNA sequence
Length = 661
Score = 369 bits (186), Expect = 2e-099
Identities = 357/408 (87%), Gaps = 7/408 (1%)
Strand = Plus / Plus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 239 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 298
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgccc-ctggtggagggccacggcttgt 376
|| |||||| ||||| | ||||| | ||||| | | |||||||| |||||||||| ||
Sbjct: 299 gctacatttccagcaac---cctggcgctgcgcacacactggtggaaggccacggctcgt 355
Query: 377 cgtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgag- 435
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||
Sbjct: 356 tgcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgaga 415
Query: 436 ctcggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgc 495
|||||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||
Sbjct: 416 ctcggaaggctgccagatgagcatagtacgcaggaggcacaattgatacagagcgagtgc 475
Query: 496 acctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatt 555
|||| ||||||||||| ||||||||||| ||||| ||||||||| | || || |||||||
Sbjct: 476 accttgcatacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatt 535
Query: 556 tgttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcat 615
|||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct: 536 tgttctcatcccacagaacatgataatgagcaggacggcctgttccctgtatgccagcat 595
Query: 616 ggctgcacaggtagaaatcaaactcgg-ttggatggcaaatctttgag 662
|||| ||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 596 ggctacacaggtagaaat-aaactcggtttggatggcaaatctttgag 642
>gb|AU183854.1|AU183854 AU183854 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50133, mRNA sequence
Length = 445
Score = 321 bits (162), Expect = 4e-085
Identities = 296/340 (87%), Gaps = 3/340 (0%)
Strand = Plus / Minus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 337 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 278
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 277 gctacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgtt 221
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 220 gcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagct 161
Query: 438 cggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcac 497
|||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 160 cggaaggctgccagatgagcatagtacgcaggaggcacaattgatacagagcgagtgcac 101
Query: 498 ctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttg 557
|| ||||||||||| ||||||||||| ||||| ||||||||| | || || |||||||||
Sbjct: 100 cttgcatacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttg 41
Query: 558 ttctcatcccacagaacatgataatgggcaggacggcttg 597
|||||||||||||||||||||||||| |||||||||||||
Sbjct: 40 ttctcatcccacagaacatgataatgagcaggacggcttg 1
>gb|CB665755.1|CB665755 OSJNEd12F14.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12F14 3', mRNA sequence
Length = 720
Score = 295 bits (149), Expect = 2e-077
Identities = 281/325 (86%)
Strand = Plus / Plus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||| |||||||||||||| |||||||| || || || ||||| ||||| |||||||||
Sbjct: 391 gtatccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcagga 450
Query: 471 ggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgaga 530
|||||||||||||| || || |||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 451 ggaacgattgatacggaacgggtgcaccttgcataggtgtagcacaagttgtttgtcaga 510
Query: 531 gtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcagga 590
|||||||| |||||||| || || ||||||||||||||||||||||||||||| |||||
Sbjct: 511 gtttgcaaaccatcagcagtgaacttgttctcatcccacagaacatgataatgtgcaggg 570
Query: 591 cggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatgg 650
|| ||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 571 cgacttgttccctgaatgcccgcatggctacacaggtagaaatcaaactcagtaggatgg 630
Query: 651 caaatctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgc 710
|| |||||||| || ||||| ||||| || ||||| || |||||||| || ||| |||
Sbjct: 631 catatctttgaatcaaccacggtgcctggtagtatatttccacttctgtcaacagtgcgc 690
Query: 711 tgatcattgtgattattaacaaaca 735
|| || ||||| |||||| ||||||
Sbjct: 691 tggtccttgtggttattagcaaaca 715
Score = 46.1 bits (23), Expect = 0.036
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
||||||||||||||||||| || || || |||||||| || |||| | ||||| ||||
Sbjct: 239 cttagcagtagaacatgacacgtttgacattttccttcagatcaggaagcggccttacag 298
Query: 319 caacatt 325
|||||||
Sbjct: 299 caacatt 305
>gb|AU029884.1|AU029884 AU029884 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50118_1A, mRNA sequence
Length = 328
Score = 270 bits (136), Expect = 1e-069
Identities = 217/244 (88%)
Strand = Plus / Minus
Query: 354 cctggtggagggccacggcttgtcgtagcaccgctcgccacagatccgctgtcacttgta 413
||||||||| |||||||||| || | ||| || ||||||| ||||| |||||| |||
Sbjct: 244 cctggtggaaggccacggctcgttgcagctccactcgccattgatccactgtcagatgtc 185
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 184 tctggctccatgtaaaagcgagctcggaaggctgccagatgagcatagtacgcaggaggc 125
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| |||
Sbjct: 124 acaattgatacagagcgagtgcaccttgcatacgtgtagcacaagttgttcgtgagggtt 65
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|||||| | || || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 64 tgcaactcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacgg 5
Query: 594 cttg 597
||||
Sbjct: 4 cttg 1
>gb|CB667383.1|CB667383 OSJNEd14L01.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14L01 5', mRNA sequence
Length = 338
Score = 266 bits (134), Expect = 2e-068
Identities = 268/312 (85%), Gaps = 3/312 (0%)
Strand = Plus / Minus
Query: 283 tcacgttttccttgagggcaggtaatggcctcacagcaacatttgcagcaccagccctgg 342
|||||||||||||||| ||||||| ||||| || || |||||| ||||| | |||||
Sbjct: 338 tcacgttttccttgagagcaggtagaggcctgacggctacatttccagcaac---cctgg 282
Query: 343 tgttgcgcgcccctggtggagggccacggcttgtcgtagcaccgctcgccacagatccgc 402
| ||||| | ||||||||| |||||||||| || | ||| || ||||||| ||||| |
Sbjct: 281 cgctgcgcacacctggtggaaggccacggctcgttgcagctccactcgccattgatccac 222
Query: 403 tgtcacttgtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagt 462
||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 221 tgtcagatgtctctggctccatgtaaaagcgagctcggaaggctgccagatgagcatagt 162
Query: 463 atgcaggaggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgt 522
| |||||||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||
Sbjct: 161 acgcaggaggcacaattgatacagagcgagtgcaccttgcatacgtgtagcacaagttgt 102
Query: 523 tggtgagagtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataat 582
| ||||| ||||||||| | | || ||||||||||||||||||||||||||||||||||
Sbjct: 101 tcgtgagggtttgcaactcgtgtgcagtaaatttgttctcatcccacagaacatgataat 42
Query: 583 gggcaggacggc 594
| ||||| ||||
Sbjct: 41 gagcaggccggc 30
>dbj|AK111500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000K24, full
insert sequence
Length = 3638
Score = 214 bits (108), Expect = 7e-053
Identities = 387/480 (80%)
Strand = Plus / Minus
Query: 412 tatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggag 471
|||||| ||||||||| || || |||| ||| || |||||||||||||||||||| || |
Sbjct: 3196 tatctgactccatgtagaaacgggctctgaacgccgccagatgagcatagtatgctggtg 3137
Query: 472 gaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagag 531
|||| || ||||| || ||||||||||| ||||| |||||||| | |||||||||||| |
Sbjct: 3136 gaacaatagatacggatcgtgtgcacctcgcataagtgtaacagaggttgttggtgaggg 3077
Query: 532 tttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggac 591
| |||||| ||||||| || || ||||| ||||||||||| || || ||||| || ||||
Sbjct: 3076 tctgcaacgcatcagctgtgaagttgttttcatcccacaggacgtggtaatgagcgggac 3017
Query: 592 ggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggc 651
||||||| |||| || |||||||||||||||| | |||| |||||||| || |||||||
Sbjct: 3016 ggcttgtgcccttgattccagcatggctgcacaagaagaagtcaaactccgtaggatggc 2957
Query: 652 aaatctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgct 711
||||||| ||||| || ||||| || |||| |||||| ||||| || ||| | | | ||
Sbjct: 2956 aaatcttggagtcaacaacagtaccaggcaatatgttcccactcctgtcgactgaattct 2897
Query: 712 gatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaag 771
|||||||||| || | |||| || || ||||| || |||||||| ||||| | ||||
Sbjct: 2896 gatcattgtggttgtgtgcaaataatctcgtgtggtggcgcttctgaaccacaatgaaag 2837
Query: 772 taactggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagtt 831
| || | || ||||||| | || | ||||||||| ||||||| || |||||||| |
Sbjct: 2836 tcacctgcggttggtaatttgcttcgagtgatgcacaagcctttcggattgcatcaagct 2777
Query: 832 cgtacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcc 891
| | ||| ||||| ||||| || || || ||||| ||||||||||| |||||||| ||||
Sbjct: 2776 catgcaatagaacctggtaaaattgcccttcactaacaccatccctatagaatattatcc 2717
>dbj|AK122176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148L17, full
insert sequence
Length = 3644
Score = 206 bits (104), Expect = 2e-050
Identities = 386/480 (80%)
Strand = Plus / Minus
Query: 412 tatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggag 471
|||||| ||||||||| || || |||| ||| || |||||||||||||||||||| || |
Sbjct: 3215 tatctgactccatgtagaaacgggctctgaacgccgccagatgagcatagtatgctggtg 3156
Query: 472 gaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagag 531
|||| || ||||| || ||||||||||| ||||| |||||||| | |||||||||||| |
Sbjct: 3155 gaacaatagatacggatcgtgtgcacctcgcataagtgtaacagaggttgttggtgaggg 3096
Query: 532 tttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggac 591
| |||||| ||||||| || || ||||| ||||||||||| || || ||||| || |||
Sbjct: 3095 tctgcaacgcatcagctgtgaagttgttttcatcccacaggacgtggtaatgagcgggat 3036
Query: 592 ggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggc 651
||||||| |||| || |||||||||||||||| | |||| |||||||| || |||||||
Sbjct: 3035 ggcttgtgcccttgattccagcatggctgcacaagaagaagtcaaactccgtaggatggc 2976
Query: 652 aaatctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgct 711
||||||| ||||| || ||||| || |||| |||||| ||||| || ||| | | | ||
Sbjct: 2975 aaatcttggagtcaacaacagtaccaggcaatatgttcccactcctgtcgactgaattct 2916
Query: 712 gatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaag 771
|||||||||| || | |||| || || ||||| || |||||||| ||||| | ||||
Sbjct: 2915 gatcattgtggttgtgtgcaaataatctcgtgtggtggcgcttctgaaccacaatgaaag 2856
Query: 772 taactggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagtt 831
| || | || ||||||| | || | ||||||||| ||||||| || |||||||| |
Sbjct: 2855 tcacctgcggttggtaatttgcttcgagtgatgcacaagcctttcggattgcatcaagct 2796
Query: 832 cgtacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcc 891
| | ||| ||||| ||||| || || || ||||| ||||||||||| |||||||| ||||
Sbjct: 2795 catgcaatagaacctggtaaaattgcccttcactaacaccatccctatagaatattatcc 2736
>dbj|AK111833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K18, full
insert sequence
Length = 1312
Score = 204 bits (103), Expect = 6e-050
Identities = 238/283 (84%)
Strand = Plus / Minus
Query: 412 tatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggag 471
|||||| ||||||||| || || |||| ||| || |||||||||||||||||||| || |
Sbjct: 882 tatctgactccatgtagaaacgggctctgaacgccgccagatgagcatagtatgctggtg 823
Query: 472 gaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagag 531
|||| || ||||| || ||||||||||| ||||| |||||||| | |||||||||||| |
Sbjct: 822 gaacaatagatacggatcgtgtgcacctcgcataagtgtaacagaggttgttggtgaggg 763
Query: 532 tttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggac 591
| |||||| ||||||| || || ||||| ||||||||||| || || ||||| || ||||
Sbjct: 762 tctgcaacgcatcagctgtgaagttgttttcatcccacaggacgtggtaatgagcgggac 703
Query: 592 ggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggc 651
||||||| |||| || |||||||||||||||| | |||| |||||||| || |||||||
Sbjct: 702 ggcttgtgcccttgattccagcatggctgcacaagaagaagtcaaactccgtaggatggc 643
Query: 652 aaatctttgagtccaccacagtgcccggcagtatgttgccact 694
||||||| ||||| || ||||| || |||| |||||| |||||
Sbjct: 642 aaatcttggagtcaacaacagtaccaggcaatatgttcccact 600
>ref|XM_468547.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3430
Score = 192 bits (97), Expect = 2e-046
Identities = 220/261 (84%)
Strand = Plus / Minus
Query: 401 gctgtcacttgtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcata 460
||||||| ||||||||| ||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 3038 gctgtcagatgtatctggttccatatagaaacgagcacggaaggcagccagatgagcata 2979
Query: 461 gtatgcaggaggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagtt 520
|| ||||| ||||| |||||||| ||||| |||||||| ||||| ||||| || | |||
Sbjct: 2978 ataagcaggtggaacaattgatacagagcgagtgcaccttgcataggtgtagcaaaggtt 2919
Query: 521 gttggtgagagtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgata 580
|||||| ||| | ||||| ||||||| || || ||||| |||||||||| ||||||||
Sbjct: 2918 gttggtaagaatctgcaatgcatcagctgtgaagttgttttcatcccacaagacatgata 2859
Query: 581 atgggcaggacggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactc 640
||| || ||||| || || |||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 2858 atgagctggacgactagtacccttaatgccagcatggctacacaggtagaagtcaaactc 2799
Query: 641 ggttggatggcaaatctttga 661
|||||||| || ||||||||
Sbjct: 2798 agttggatgacagatctttga 2778
>gb|C29031.1|C29031 C29031 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C63231_1A, mRNA sequence
Length = 334
Score = 186 bits (94), Expect = 2e-044
Identities = 219/261 (83%)
Strand = Plus / Minus
Query: 401 gctgtcacttgtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcata 460
||||||| ||||||||| ||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 294 gctgtcagatgtatctggttccatatagaaacgagcacggaaggcagccagatgagcata 235
Query: 461 gtatgcaggaggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagtt 520
|| || || ||||| |||||||| ||||| |||||||| ||||| ||||| || | |||
Sbjct: 234 ataagcnggtggaacaattgatacagagcgagtgcaccttgcataggtgtagcaaaggtt 175
Query: 521 gttggtgagagtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgata 580
|||||| ||| | ||||| ||||||| || || ||||| |||||||||| ||||||||
Sbjct: 174 gttggtaagaatctgcaatgcatcagctgtgaagttgttttcatcccacaagacatgata 115
Query: 581 atgggcaggacggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactc 640
||| || ||||| || || |||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 114 atgagctggacgactagtacccttaatgccagcatggctacacaggtagaagtcaaactc 55
Query: 641 ggttggatggcaaatctttga 661
|||||||| || ||||||||
Sbjct: 54 agttggatgacagatctttga 34
>dbj|AB081951.1| Oryza sativa (japonica cultivar-group) OsAGO1 mRNA for AGO1
homologous protein, complete cds
Length = 3306
Score = 184 bits (93), Expect = 6e-044
Identities = 219/261 (83%)
Strand = Plus / Minus
Query: 401 gctgtcacttgtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcata 460
||||||| ||||||||| ||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 2889 gctgtcagatgtatctggttccatatagaaacgagcacggaaggcagccagatgagcata 2830
Query: 461 gtatgcaggaggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagtt 520
|| ||||| ||||| |||||||| ||||| |||||||| ||||| ||||| || | |||
Sbjct: 2829 ataagcaggtggaacaattgatacagagcgagtgcaccttgcataggtgtagcaaaggtt 2770
Query: 521 gttggtgagagtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgata 580
|||||| ||| | ||||| ||||||| || || ||||| |||| ||||| ||||||||
Sbjct: 2769 gttggtaagaatctgcaatgcatcagctgtgaagttgttttcattccacaagacatgata 2710
Query: 581 atgggcaggacggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactc 640
||| || ||||| || || |||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 2709 atgagctggacgactagtacccttaatgccagcatggctacacaggtagaagtcaaactc 2650
Query: 641 ggttggatggcaaatctttga 661
|||||||| || ||||||||
Sbjct: 2649 agttggatgacagatctttga 2629
>dbj|AK103279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124L10, full
insert sequence
Length = 3432
Score = 184 bits (93), Expect = 6e-044
Identities = 210/249 (84%)
Strand = Plus / Minus
Query: 401 gctgtcacttgtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcata 460
||||||| ||||||||| ||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 3038 gctgtcagatgtatctggttccatatagaaacgagcacggaaggcagccagatgagcata 2979
Query: 461 gtatgcaggaggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagtt 520
|| ||||| ||||| |||||||| ||||| |||||||| ||||| ||||| || | |||
Sbjct: 2978 ataagcaggtggaacaattgatacagagcgagtgcaccttgcataggtgtagcaaaggtt 2919
Query: 521 gttggtgagagtttgcaacccatcagccgtaaatttgttctcatcccacagaacatgata 580
|||||| ||| | ||||| ||||||| || || ||||| |||||||||| ||||||||
Sbjct: 2918 gttggtaagaatctgcaatgcatcagctgtgaagttgttttcatcccacaagacatgata 2859
Query: 581 atgggcaggacggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactc 640
||| || ||||| || || |||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 2858 atgagctggacgactagtacccttaatgccagcatggctacacaggtagaagtcaaactc 2799
Query: 641 ggttggatg 649
||||||||
Sbjct: 2798 agttggatg 2790
>gb|AACV01010310.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010310, whole
genome shotgun sequence
Length = 13371
Score = 176 bits (89), Expect = 1e-041
Identities = 184/215 (85%), Gaps = 3/215 (1%)
Strand = Plus / Plus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 4781 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 4840
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 4841 gctacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgtt 4897
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 4898 gcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagct 4957
Query: 438 cggaaggctgccagatgagcatagtatgcaggagg 472
|||||||||||||||||||||||||| ||||||||
Sbjct: 4958 cggaaggctgccagatgagcatagtacgcaggagg 4992
Score = 135 bits (68), Expect = 5e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| ||||||||||| ||||| ||||||||| | || || |||||||||||||||
Sbjct: 5210 tacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttgttctca 5269
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 5270 tcccacagaacatgataatgagcaggacggcttgttccct 5309
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 678 ggcagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaac 737
||||| ||||| ||||||||||| ||| |||||| || |||||||||||| ||||||||
Sbjct: 5567 ggcagaatgtttccacttctatcaacagtacgctggtcgttgtgattattagcaaacaac 5626
Query: 738 ctggtgtgatgacgcttctggaccacgacaaaagtaactggaggctg 784
|| |||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 5627 cttgtgtgatgccgcttctggaccaccacaaaggtaactggaggctg 5673
Score = 113 bits (57), Expect = 2e-022
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5394 cctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggcaaatctttg 5453
Query: 661 agtccaccacagt 673
|||| || |||||
Sbjct: 5454 agtcaacaacagt 5466
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 811 cctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacac 870
||||||||||||||||||| || ||||||| |||||| || ||||| ||||| |||||||
Sbjct: 5777 cctttctaatggcatcaagctcatacaacaaaacttgataaaactgcccctcgctgacac 5836
Query: 871 catccctg 878
||||||||
Sbjct: 5837 catccctg 5844
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 875 cctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||||| ||||| ||||||| ||||| |||||||| |||||| |||||||||||||||
Sbjct: 5952 cctgtaaaatattatcctctgaggtttctgtccagtagccctcttgaaagaaatgagaag 6011
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 176 bits (89), Expect = 1e-041
Identities = 184/215 (85%), Gaps = 3/215 (1%)
Strand = Plus / Plus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 2176750 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 2176809
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 2176810 gctacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgtt 2176866
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 2176867 gcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagct 2176926
Query: 438 cggaaggctgccagatgagcatagtatgcaggagg 472
|||||||||||||||||||||||||| ||||||||
Sbjct: 2176927 cggaaggctgccagatgagcatagtacgcaggagg 2176961
Score = 135 bits (68), Expect = 5e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| ||||||||||| ||||| ||||||||| | || || |||||||||||||||
Sbjct: 2177179 tacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttgttctca 2177238
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 2177239 tcccacagaacatgataatgagcaggacggcttgttccct 2177278
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 678 ggcagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaac 737
||||| ||||| ||||||||||| ||| |||||| || |||||||||||| ||||||||
Sbjct: 2177536 ggcagaatgtttccacttctatcaacagtacgctggtcgttgtgattattagcaaacaac 2177595
Query: 738 ctggtgtgatgacgcttctggaccacgacaaaagtaactggaggctg 784
|| |||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 2177596 cttgtgtgatgccgcttctggaccaccacaaaggtaactggaggctg 2177642
Score = 113 bits (57), Expect = 2e-022
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2177363 cctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggcaaatctttg 2177422
Query: 661 agtccaccacagt 673
|||| || |||||
Sbjct: 2177423 agtcaacaacagt 2177435
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 811 cctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacac 870
||||||||||||||||||| || ||||||| |||||| || ||||| ||||| |||||||
Sbjct: 2177746 cctttctaatggcatcaagctcatacaacaaaacttgataaaactgcccctcgctgacac 2177805
Query: 871 catccctg 878
||||||||
Sbjct: 2177806 catccctg 2177813
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 875 cctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||||| ||||| ||||||| ||||| |||||||| |||||| |||||||||||||||
Sbjct: 2177921 cctgtaaaatattatcctctgaggtttctgtccagtagccctcttgaaagaaatgagaag 2177980
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 176 bits (89), Expect = 1e-041
Identities = 184/215 (85%), Gaps = 3/215 (1%)
Strand = Plus / Plus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 6217364 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 6217423
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 6217424 gctacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgtt 6217480
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 6217481 gcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagct 6217540
Query: 438 cggaaggctgccagatgagcatagtatgcaggagg 472
|||||||||||||||||||||||||| ||||||||
Sbjct: 6217541 cggaaggctgccagatgagcatagtacgcaggagg 6217575
Score = 135 bits (68), Expect = 5e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| ||||||||||| ||||| ||||||||| | || || |||||||||||||||
Sbjct: 6217793 tacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttgttctca 6217852
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 6217853 tcccacagaacatgataatgagcaggacggcttgttccct 6217892
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 678 ggcagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaac 737
||||| ||||| ||||||||||| ||| |||||| || |||||||||||| ||||||||
Sbjct: 6218150 ggcagaatgtttccacttctatcaacagtacgctggtcgttgtgattattagcaaacaac 6218209
Query: 738 ctggtgtgatgacgcttctggaccacgacaaaagtaactggaggctg 784
|| |||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 6218210 cttgtgtgatgccgcttctggaccaccacaaaggtaactggaggctg 6218256
Score = 113 bits (57), Expect = 2e-022
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6217977 cctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggcaaatctttg 6218036
Query: 661 agtccaccacagt 673
|||| || |||||
Sbjct: 6218037 agtcaacaacagt 6218049
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 811 cctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacac 870
||||||||||||||||||| || ||||||| |||||| || ||||| ||||| |||||||
Sbjct: 6218360 cctttctaatggcatcaagctcatacaacaaaacttgataaaactgcccctcgctgacac 6218419
Query: 871 catccctg 878
||||||||
Sbjct: 6218420 catccctg 6218427
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 875 cctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||||| ||||| ||||||| ||||| |||||||| |||||| |||||||||||||||
Sbjct: 6218535 cctgtaaaatattatcctctgaggtttctgtccagtagccctcttgaaagaaatgagaag 6218594
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 176 bits (89), Expect = 1e-041
Identities = 184/215 (85%), Gaps = 3/215 (1%)
Strand = Plus / Plus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 25361463 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 25361522
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 25361523 gctacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgtt 25361579
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 25361580 gcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagct 25361639
Query: 438 cggaaggctgccagatgagcatagtatgcaggagg 472
|||||||||||||||||||||||||| ||||||||
Sbjct: 25361640 cggaaggctgccagatgagcatagtacgcaggagg 25361674
Score = 135 bits (68), Expect = 5e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| ||||||||||| ||||| ||||||||| | || || |||||||||||||||
Sbjct: 25361892 tacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttgttctca 25361951
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 25361952 tcccacagaacatgataatgagcaggacggcttgttccct 25361991
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 678 ggcagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaac 737
||||| ||||| ||||||||||| ||| |||||| || |||||||||||| ||||||||
Sbjct: 25362249 ggcagaatgtttccacttctatcaacagtacgctggtcgttgtgattattagcaaacaac 25362308
Query: 738 ctggtgtgatgacgcttctggaccacgacaaaagtaactggaggctg 784
|| |||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 25362309 cttgtgtgatgccgcttctggaccaccacaaaggtaactggaggctg 25362355
Score = 113 bits (57), Expect = 2e-022
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 25362076 cctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggcaaatctttg 25362135
Query: 661 agtccaccacagt 673
|||| || |||||
Sbjct: 25362136 agtcaacaacagt 25362148
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 811 cctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacac 870
||||||||||||||||||| || ||||||| |||||| || ||||| ||||| |||||||
Sbjct: 25362459 cctttctaatggcatcaagctcatacaacaaaacttgataaaactgcccctcgctgacac 25362518
Query: 871 catccctg 878
||||||||
Sbjct: 25362519 catccctg 25362526
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 875 cctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||||| ||||| ||||||| ||||| |||||||| |||||| |||||||||||||||
Sbjct: 25362634 cctgtaaaatattatcctctgaggtttctgtccagtagccctcttgaaagaaatgagaag 25362693
>emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02,
complete sequence
Length = 175163
Score = 176 bits (89), Expect = 1e-041
Identities = 184/215 (85%), Gaps = 3/215 (1%)
Strand = Plus / Plus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 48774 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 48833
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 48834 gctacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgtt 48890
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 48891 gcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagct 48950
Query: 438 cggaaggctgccagatgagcatagtatgcaggagg 472
|||||||||||||||||||||||||| ||||||||
Sbjct: 48951 cggaaggctgccagatgagcatagtacgcaggagg 48985
Score = 135 bits (68), Expect = 5e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| ||||||||||| ||||| ||||||||| | || || |||||||||||||||
Sbjct: 49203 tacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttgttctca 49262
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 49263 tcccacagaacatgataatgagcaggacggcttgttccct 49302
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 678 ggcagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaac 737
||||| ||||| ||||||||||| ||| |||||| || |||||||||||| ||||||||
Sbjct: 49560 ggcagaatgtttccacttctatcaacagtacgctggtcgttgtgattattagcaaacaac 49619
Query: 738 ctggtgtgatgacgcttctggaccacgacaaaagtaactggaggctg 784
|| |||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 49620 cttgtgtgatgccgcttctggaccaccacaaaggtaactggaggctg 49666
Score = 113 bits (57), Expect = 2e-022
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 49387 cctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggcaaatctttg 49446
Query: 661 agtccaccacagt 673
|||| || |||||
Sbjct: 49447 agtcaacaacagt 49459
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 811 cctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacac 870
||||||||||||||||||| || ||||||| |||||| || ||||| ||||| |||||||
Sbjct: 49770 cctttctaatggcatcaagctcatacaacaaaacttgataaaactgcccctcgctgacac 49829
Query: 871 catccctg 878
||||||||
Sbjct: 49830 catccctg 49837
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 875 cctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||||| ||||| ||||||| ||||| |||||||| |||||| |||||||||||||||
Sbjct: 49945 cctgtaaaatattatcctctgaggtttctgtccagtagccctcttgaaagaaatgagaag 50004
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 176 bits (89), Expect = 1e-041
Identities = 184/215 (85%), Gaps = 3/215 (1%)
Strand = Plus / Plus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 28400099 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 28400158
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||||| | ||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 28400159 gctacatttccagcaac---cctggcgctgcgcacacctggtggaaggccacggctcgtt 28400215
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgtaaaaccgagct 437
| ||| || ||||||| ||||| |||||| ||| ||||||||||||||||| ||||||
Sbjct: 28400216 gcagctccactcgccattgatccactgtcagatgtctctggctccatgtaaaagcgagct 28400275
Query: 438 cggaaggctgccagatgagcatagtatgcaggagg 472
|||||||||||||||||||||||||| ||||||||
Sbjct: 28400276 cggaaggctgccagatgagcatagtacgcaggagg 28400310
Score = 135 bits (68), Expect = 5e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| ||||||||||| ||||| ||||||||| | || || |||||||||||||||
Sbjct: 28400528 tacgtgtagcacaagttgttcgtgagggtttgcaactcgtctgcagtaaatttgttctca 28400587
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 28400588 tcccacagaacatgataatgagcaggacggcttgttccct 28400627
Score = 117 bits (59), Expect = 1e-023
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 678 ggcagtatgttgccacttctatcggcagcacgctgatcattgtgattattaacaaacaac 737
||||| ||||| ||||||||||| ||| |||||| || |||||||||||| ||||||||
Sbjct: 28400885 ggcagaatgtttccacttctatcaacagtacgctggtcgttgtgattattagcaaacaac 28400944
Query: 738 ctggtgtgatgacgcttctggaccacgacaaaagtaactggaggctg 784
|| |||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 28400945 cttgtgtgatgccgcttctggaccaccacaaaggtaactggaggctg 28400991
Score = 113 bits (57), Expect = 2e-022
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 28400712 cctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggcaaatctttg 28400771
Query: 661 agtccaccacagt 673
|||| || |||||
Sbjct: 28400772 agtcaacaacagt 28400784
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 811 cctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacac 870
||||||||||||||||||| || ||||||| |||||| || ||||| ||||| |||||||
Sbjct: 28401095 cctttctaatggcatcaagctcatacaacaaaacttgataaaactgcccctcgctgacac 28401154
Query: 871 catccctg 878
||||||||
Sbjct: 28401155 catccctg 28401162
Score = 56.0 bits (28), Expect = 4e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 875 cctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||||| ||||| ||||||| ||||| |||||||| |||||| |||||||||||||||
Sbjct: 28401270 cctgtaaaatattatcctctgaggtttctgtccagtagccctcttgaaagaaatgagaag 28401329
>gb|AU030923.1|AU030923 AU030923 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60443_2Z, mRNA sequence
Length = 714
Score = 153 bits (77), Expect = 2e-034
Identities = 207/248 (83%), Gaps = 2/248 (0%)
Strand = Plus / Minus
Query: 412 tatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggag 471
|||||| ||||||||| || || |||| ||| || |||||||||||||||||||| || |
Sbjct: 256 tatctgactccatgtagaaacgggctctgaacgccgccagatgagcatagtatgctggtg 197
Query: 472 gaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagag 531
|||| || ||||| || ||||||||||| ||||| |||||||| | |||||||||||| |
Sbjct: 196 gaacaatagatacggatcgtgtgcacctcgcataagtgtaacagaggttgttggtgaggg 137
Query: 532 tttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggc-agga 590
| |||||| ||||||| || || ||||| ||||||||||| || || ||||| || |||
Sbjct: 136 tctgcaacgcatcagctgtgaagttgttttcatcccacaggacgtggtaatgagcgggga 77
Query: 591 cggcttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatgg 650
|||||||| |||| || ||||||||||||||| | |||| |||||||| | | |||||
Sbjct: 76 cggcttgtgcccttgattccagcatggctgcacnagaagaagtcaaactccg-tagatgg 18
Query: 651 caaatctt 658
||||||||
Sbjct: 17 caaatctt 10
>dbj|AK102911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113J23, full
insert sequence
Length = 2997
Score = 141 bits (71), Expect = 8e-031
Identities = 135/155 (87%), Gaps = 1/155 (0%)
Strand = Plus / Minus
Query: 801 gatgcacaggcctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccc 860
|||||||| |||||||||||||||||||| || ||||||| |||||| || ||||| |||
Sbjct: 2992 gatgcacaagcctttctaatggcatcaagctcatacaacaaaacttgataaaactgcccc 2933
Query: 861 tcactgacaccatccctgtagaatatgatcctcttgggtttttgtccagtcgccctccag 920
|| ||||||||||||||||| ||||| ||||||| ||||| |||||||| |||||| |
Sbjct: 2932 tcgctgacaccatccctgtaaaatattatcctctgaggtttctgtccagtagccctcttg 2873
Query: 921 aaagaaatgagaaggttccctaatcatgccaccag 955
||||||||||||| | ||| | |||||||||||||
Sbjct: 2872 aaagaaatgagaa-gctccttgatcatgccaccag 2839
>gb|AU225409.1|AU225409 AU225409 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0368, mRNA sequence
Length = 482
Score = 131 bits (66), Expect = 8e-028
Identities = 114/130 (87%)
Strand = Plus / Plus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||| |||||||||||||| |||||||| || || || ||||| ||||| |||||||||
Sbjct: 329 gtatccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcagga 388
Query: 471 ggaacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgaga 530
|||||||||||||| || || |||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 389 ggaacgattgatacggaacgggtgcaccttgcataggtgtagcacaagttgtttgtcaga 448
Query: 531 gtttgcaacc 540
||||||||||
Sbjct: 449 gtttgcaacc 458
Score = 46.1 bits (23), Expect = 0.036
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
||||||||||||||||||| || || || |||||||| || |||| | ||||| ||||
Sbjct: 177 cttagcagtagaacatgacacgtttgacattttccttcagatcaggaagcggccttacag 236
Query: 319 caacatt 325
|||||||
Sbjct: 237 caacatt 243
>gb|CB649652.1|CB649652 OSJNEb13L12.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13L12 5', mRNA sequence
Length = 848
Score = 125 bits (63), Expect = 5e-026
Identities = 134/155 (86%), Gaps = 2/155 (1%)
Strand = Plus / Minus
Query: 801 gatgcacaggcctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccc 860
|||||||| ||||| |||||||||||||| || ||||||| |||||| || ||||| |||
Sbjct: 848 gatgcacaagcctt-ctaatggcatcaagctcatacaacaaaacttgataaaactgcccc 790
Query: 861 tcactgacaccatccctgtagaatatgatcctcttgggtttttgtccagtcgccctccag 920
|| ||||||||||||||||| ||||| ||||||| ||||| |||||||| |||||| |
Sbjct: 789 tcgctgacaccatccctgtaaaatattatcctctgaggtttctgtccagtagccctcttg 730
Query: 921 aaagaaatgagaaggttccctaatcatgccaccag 955
||||||||||||| | ||| | |||||||||||||
Sbjct: 729 aaagaaatgagaa-gctccttgatcatgccaccag 696
>gb|AU101021.1|AU101021 AU101021 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C63231, mRNA sequence
Length = 630
Score = 123 bits (62), Expect = 2e-025
Identities = 205/249 (82%), Gaps = 3/249 (1%)
Strand = Plus / Minus
Query: 401 gctgtcacttgtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcata 460
||||||| ||||||||| ||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 284 gctgtcagatgtatctggttccatatagaaacgagcacggaaggcagccagatgagcata 225
Query: 461 gtatgcaggaggaacgattgatactgag-cgtgtgcacctggcatacgtgtaacacaagt 519
|| ||||| ||||| |||||||| ||| || |||||||| ||||| ||||| || | ||
Sbjct: 224 ataagcaggtggaacaattgatacagagccgagtgcaccttgcataggtgtagcaaaggt 165
Query: 520 tgttggtgagagtttgcaacccatcagccgt-aaatttgttctcatcccacagaacatga 578
||||||| ||| | ||||| ||| ||| || ||| ||| | |||| ||||| ||||||
Sbjct: 164 tgttggtaagaatctgcaatgcattagctgtgaaagttggtttcatnccacaagacatga 105
Query: 579 taatgggcaggacggcttgttccctgaatgccagcatggct-gcacaggtagaaatcaaa 637
||||| || ||||| || || |||| ||||||||||||||| ||||||||||| |||||
Sbjct: 104 taatgagctggacgactagtacccttaatgccagcatggctaccacaggtagaagtcaaa 45
Query: 638 ctcggttgg 646
||| |||||
Sbjct: 44 ctcagttgg 36
>dbj|AP004188.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1493_H11
Length = 106693
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| ||||||||||| || ||||||||||| |||||||| || || |||||||||
Sbjct: 64350 tacgtgtagcacaagttgtttgtcagagtttgcaaaccatcagcagtgaacttgttctca 64409
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||||||||||||||| ||||| || ||||||||||
Sbjct: 64410 tcccacagaacatgataatgtgcagggcgacttgttccct 64449
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct: 64546 cctgaatgcccgcatggctacacaggtagaaatcaaactcagtaggatggcatatctttg 64605
Query: 661 agtccaccacagtgcc 676
| || ||||| |||||
Sbjct: 64606 aatcaaccacggtgcc 64621
Score = 83.8 bits (42), Expect = 2e-013
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 708 cgctgatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgaca 767
||||| || ||||| |||||| |||||| ||| ||||||||||||||||||||||| |||
Sbjct: 64765 cgctggtccttgtggttattagcaaacagccttgtgtgatgacgcttctggaccaccaca 64824
Query: 768 aaagtaactggaggctggtaatcagactccaatgatgcacaggcct 813
|| ||||| || ||||| ||||| | ||||| |||||||| ||||
Sbjct: 64825 aaggtaacgggtggctgataatcggcttccaaagatgcacatgcct 64870
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 811 cctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacac 870
||||||||||||||||||| || || |||||||| || || |||||||| ||||||||||
Sbjct: 64947 cctttctaatggcatcaagctcataaaacagaacctgataaaactgtccttcactgacac 65006
Query: 871 catccctg 878
||||||||
Sbjct: 65007 catccctg 65014
Score = 65.9 bits (33), Expect = 4e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||| |||||||||||||| |||||||| || || || ||||| ||||| |||||||||
Sbjct: 64062 gtatccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcagga 64121
Query: 471 ggaac 475
|||||
Sbjct: 64122 ggaac 64126
Score = 63.9 bits (32), Expect = 2e-007
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 875 cctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||||| ||||| ||||||| |||||| |||||||| |||||| |||||||||||||||
Sbjct: 65088 cctgtaaaatataatcctctggggtttctgtccagttgccctcttgaaagaaatgagaag 65147
Score = 46.1 bits (23), Expect = 0.036
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
||||||||||||||||||| || || || |||||||| || |||| | ||||| ||||
Sbjct: 63910 cttagcagtagaacatgacacgtttgacattttccttcagatcaggaagcggccttacag 63969
Query: 319 caacatt 325
|||||||
Sbjct: 63970 caacatt 63976
>gb|AACV01005121.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005121, whole
genome shotgun sequence
Length = 43744
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| ||||||||||| || ||||||||||| |||||||| || || |||||||||
Sbjct: 12921 tacgtgtagcacaagttgtttgtcagagtttgcaaaccatcagcagtgaacttgttctca 12862
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||||||||||||||| ||||| || ||||||||||
Sbjct: 12861 tcccacagaacatgataatgtgcagggcgacttgttccct 12822
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct: 12725 cctgaatgcccgcatggctacacaggtagaaatcaaactcagtaggatggcatatctttg 12666
Query: 661 agtccaccacagtgcc 676
| || ||||| |||||
Sbjct: 12665 aatcaaccacggtgcc 12650
Score = 83.8 bits (42), Expect = 2e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 708 cgctgatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgaca 767
||||| || ||||| |||||| |||||| ||| ||||||||||||||||||||||| |||
Sbjct: 12506 cgctggtccttgtggttattagcaaacagccttgtgtgatgacgcttctggaccaccaca 12447
Query: 768 aaagtaactggaggctggtaatcagactccaatgatgcacaggcct 813
|| ||||| || ||||| ||||| | ||||| |||||||| ||||
Sbjct: 12446 aaggtaacgggtggctgataatcggcttccaaagatgcacatgcct 12401
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 811 cctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacac 870
||||||||||||||||||| || || |||||||| || || |||||||| ||||||||||
Sbjct: 12324 cctttctaatggcatcaagctcataaaacagaacctgataaaactgtccttcactgacac 12265
Query: 871 catccctg 878
||||||||
Sbjct: 12264 catccctg 12257
Score = 65.9 bits (33), Expect = 4e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||| |||||||||||||| |||||||| || || || ||||| ||||| |||||||||
Sbjct: 13209 gtatccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcagga 13150
Query: 471 ggaac 475
|||||
Sbjct: 13149 ggaac 13145
Score = 63.9 bits (32), Expect = 2e-007
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 875 cctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||||| ||||| ||||||| |||||| |||||||| |||||| |||||||||||||||
Sbjct: 12183 cctgtaaaatataatcctctggggtttctgtccagttgccctcttgaaagaaatgagaag 12124
Score = 46.1 bits (23), Expect = 0.036
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
||||||||||||||||||| || || || |||||||| || |||| | ||||| ||||
Sbjct: 13361 cttagcagtagaacatgacacgtttgacattttccttcagatcaggaagcggccttacag 13302
Query: 319 caacatt 325
|||||||
Sbjct: 13301 caacatt 13295
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| ||||||||||| || ||||||||||| |||||||| || || |||||||||
Sbjct: 2514416 tacgtgtagcacaagttgtttgtcagagtttgcaaaccatcagcagtgaacttgttctca 2514475
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||||||||||||||| ||||| || ||||||||||
Sbjct: 2514476 tcccacagaacatgataatgtgcagggcgacttgttccct 2514515
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct: 2514612 cctgaatgcccgcatggctacacaggtagaaatcaaactcagtaggatggcatatctttg 2514671
Query: 661 agtccaccacagtgcc 676
| || ||||| |||||
Sbjct: 2514672 aatcaaccacggtgcc 2514687
Score = 83.8 bits (42), Expect = 2e-013
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 708 cgctgatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgaca 767
||||| || ||||| |||||| |||||| ||| ||||||||||||||||||||||| |||
Sbjct: 2514831 cgctggtccttgtggttattagcaaacagccttgtgtgatgacgcttctggaccaccaca 2514890
Query: 768 aaagtaactggaggctggtaatcagactccaatgatgcacaggcct 813
|| ||||| || ||||| ||||| | ||||| |||||||| ||||
Sbjct: 2514891 aaggtaacgggtggctgataatcggcttccaaagatgcacatgcct 2514936
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 811 cctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacac 870
||||||||||||||||||| || || |||||||| || || |||||||| ||||||||||
Sbjct: 2515013 cctttctaatggcatcaagctcataaaacagaacctgataaaactgtccttcactgacac 2515072
Query: 871 catccctg 878
||||||||
Sbjct: 2515073 catccctg 2515080
Score = 65.9 bits (33), Expect = 4e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||| |||||||||||||| |||||||| || || || ||||| ||||| |||||||||
Sbjct: 2514128 gtatccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcagga 2514187
Query: 471 ggaac 475
|||||
Sbjct: 2514188 ggaac 2514192
Score = 63.9 bits (32), Expect = 2e-007
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 875 cctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||||| ||||| ||||||| |||||| |||||||| |||||| |||||||||||||||
Sbjct: 2515154 cctgtaaaatataatcctctggggtttctgtccagttgccctcttgaaagaaatgagaag 2515213
Score = 46.1 bits (23), Expect = 0.036
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
||||||||||||||||||| || || || |||||||| || |||| | ||||| ||||
Sbjct: 2513976 cttagcagtagaacatgacacgtttgacattttccttcagatcaggaagcggccttacag 2514035
Query: 319 caacatt 325
|||||||
Sbjct: 2514036 caacatt 2514042
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| ||||||||||| || ||||||||||| |||||||| || || |||||||||
Sbjct: 13780987 tacgtgtagcacaagttgtttgtcagagtttgcaaaccatcagcagtgaacttgttctca 13781046
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||||||||||||||| ||||| || ||||||||||
Sbjct: 13781047 tcccacagaacatgataatgtgcagggcgacttgttccct 13781086
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct: 13781183 cctgaatgcccgcatggctacacaggtagaaatcaaactcagtaggatggcatatctttg 13781242
Query: 661 agtccaccacagtgcc 676
| || ||||| |||||
Sbjct: 13781243 aatcaaccacggtgcc 13781258
Score = 83.8 bits (42), Expect = 2e-013
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 708 cgctgatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgaca 767
||||| || ||||| |||||| |||||| ||| ||||||||||||||||||||||| |||
Sbjct: 13781402 cgctggtccttgtggttattagcaaacagccttgtgtgatgacgcttctggaccaccaca 13781461
Query: 768 aaagtaactggaggctggtaatcagactccaatgatgcacaggcct 813
|| ||||| || ||||| ||||| | ||||| |||||||| ||||
Sbjct: 13781462 aaggtaacgggtggctgataatcggcttccaaagatgcacatgcct 13781507
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 811 cctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacac 870
||||||||||||||||||| || || |||||||| || || |||||||| ||||||||||
Sbjct: 13781584 cctttctaatggcatcaagctcataaaacagaacctgataaaactgtccttcactgacac 13781643
Query: 871 catccctg 878
||||||||
Sbjct: 13781644 catccctg 13781651
Score = 73.8 bits (37), Expect = 2e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 605 aatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttga 661
||||||||||||||| ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 22410079 aatgccagcatggctacacaggtagaagtcaaactcagttggatgacagatctttga 22410135
Score = 65.9 bits (33), Expect = 4e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||| |||||||||||||| |||||||| || || || ||||| ||||| |||||||||
Sbjct: 13780699 gtatccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcagga 13780758
Query: 471 ggaac 475
|||||
Sbjct: 13780759 ggaac 13780763
Score = 63.9 bits (32), Expect = 2e-007
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 875 cctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||||| ||||| ||||||| |||||| |||||||| |||||| |||||||||||||||
Sbjct: 13781725 cctgtaaaatataatcctctggggtttctgtccagttgccctcttgaaagaaatgagaag 13781784
Score = 61.9 bits (31), Expect = 6e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 401 gctgtcacttgtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcata 460
||||||| ||||||||| ||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 22409623 gctgtcagatgtatctggttccatatagaaacgagcacggaaggcagccagatgagcata 22409682
Query: 461 gtatgcaggaggaac 475
|| ||||| |||||
Sbjct: 22409683 ataagcaggtggaac 22409697
Score = 50.1 bits (25), Expect = 0.002
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| || | ||||||||| ||| | ||||| ||||||| || || ||||| |||
Sbjct: 22409893 tacgtgtagcaaaggttgttggtaagaatctgcaatgcatcagctgtgaagttgttttca 22409952
Query: 564 tcccacagaacatgataatgggcaggacg 592
||||||| ||||||||||| || |||||
Sbjct: 22409953 tcccacaagacatgataatgagctggacg 22409981
Score = 46.1 bits (23), Expect = 0.036
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
||||||||||||||||||| || || || |||||||| || |||| | ||||| ||||
Sbjct: 13780547 cttagcagtagaacatgacacgtttgacattttccttcagatcaggaagcggccttacag 13780606
Query: 319 caacatt 325
|||||||
Sbjct: 13780607 caacatt 13780613
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| ||||||||||| || ||||||||||| |||||||| || || |||||||||
Sbjct: 27234051 tacgtgtagcacaagttgtttgtcagagtttgcaaaccatcagcagtgaacttgttctca 27234110
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||||||||||||||| ||||| || ||||||||||
Sbjct: 27234111 tcccacagaacatgataatgtgcagggcgacttgttccct 27234150
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct: 27234247 cctgaatgcccgcatggctacacaggtagaaatcaaactcagtaggatggcatatctttg 27234306
Query: 661 agtccaccacagtgcc 676
| || ||||| |||||
Sbjct: 27234307 aatcaaccacggtgcc 27234322
Score = 83.8 bits (42), Expect = 2e-013
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 708 cgctgatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgaca 767
||||| || ||||| |||||| |||||| ||| ||||||||||||||||||||||| |||
Sbjct: 27234466 cgctggtccttgtggttattagcaaacagccttgtgtgatgacgcttctggaccaccaca 27234525
Query: 768 aaagtaactggaggctggtaatcagactccaatgatgcacaggcct 813
|| ||||| || ||||| ||||| | ||||| |||||||| ||||
Sbjct: 27234526 aaggtaacgggtggctgataatcggcttccaaagatgcacatgcct 27234571
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 811 cctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacac 870
||||||||||||||||||| || || |||||||| || || |||||||| ||||||||||
Sbjct: 27234648 cctttctaatggcatcaagctcataaaacagaacctgataaaactgtccttcactgacac 27234707
Query: 871 catccctg 878
||||||||
Sbjct: 27234708 catccctg 27234715
Score = 73.8 bits (37), Expect = 2e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 605 aatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttga 661
||||||||||||||| ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 35863143 aatgccagcatggctacacaggtagaagtcaaactcagttggatgacagatctttga 35863199
Score = 65.9 bits (33), Expect = 4e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||| |||||||||||||| |||||||| || || || ||||| ||||| |||||||||
Sbjct: 27233763 gtatccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcagga 27233822
Query: 471 ggaac 475
|||||
Sbjct: 27233823 ggaac 27233827
Score = 63.9 bits (32), Expect = 2e-007
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 875 cctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||||| ||||| ||||||| |||||| |||||||| |||||| |||||||||||||||
Sbjct: 27234789 cctgtaaaatataatcctctggggtttctgtccagttgccctcttgaaagaaatgagaag 27234848
Score = 61.9 bits (31), Expect = 6e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 401 gctgtcacttgtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcata 460
||||||| ||||||||| ||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 35862687 gctgtcagatgtatctggttccatatagaaacgagcacggaaggcagccagatgagcata 35862746
Query: 461 gtatgcaggaggaac 475
|| ||||| |||||
Sbjct: 35862747 ataagcaggtggaac 35862761
Score = 50.1 bits (25), Expect = 0.002
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| || | ||||||||| ||| | ||||| ||||||| || || ||||| |||
Sbjct: 35862957 tacgtgtagcaaaggttgttggtaagaatctgcaatgcatcagctgtgaagttgttttca 35863016
Query: 564 tcccacagaacatgataatgggcaggacg 592
||||||| ||||||||||| || |||||
Sbjct: 35863017 tcccacaagacatgataatgagctggacg 35863045
Score = 46.1 bits (23), Expect = 0.036
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
||||||||||||||||||| || || || |||||||| || |||| | ||||| ||||
Sbjct: 27233611 cttagcagtagaacatgacacgtttgacattttccttcagatcaggaagcggccttacag 27233670
Query: 319 caacatt 325
|||||||
Sbjct: 27233671 caacatt 27233677
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 615 tggctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagt 673
||||| |||| |||||||||||||| |||| |||||||| ||||| || ||||||||
Sbjct: 3844613 tggctacacaagtagaaatcaaactgatttggttggcaaatatttgaatcaaccacagt 3844671
Score = 44.1 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 557 gttctcatcccacagaacatgataat 582
|||||| |||||||||||||||||||
Sbjct: 3844464 gttctcgtcccacagaacatgataat 3844489
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| ||||||||||| || ||||||||||| |||||||| || || |||||||||
Sbjct: 27349417 tacgtgtagcacaagttgtttgtcagagtttgcaaaccatcagcagtgaacttgttctca 27349476
Query: 564 tcccacagaacatgataatgggcaggacggcttgttccct 603
|||||||||||||||||||| ||||| || ||||||||||
Sbjct: 27349477 tcccacagaacatgataatgtgcagggcgacttgttccct 27349516
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 601 cctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttg 660
|||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct: 27349613 cctgaatgcccgcatggctacacaggtagaaatcaaactcagtaggatggcatatctttg 27349672
Query: 661 agtccaccacagtgcc 676
| || ||||| |||||
Sbjct: 27349673 aatcaaccacggtgcc 27349688
Score = 83.8 bits (42), Expect = 2e-013
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 708 cgctgatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgaca 767
||||| || ||||| |||||| |||||| ||| ||||||||||||||||||||||| |||
Sbjct: 27349832 cgctggtccttgtggttattagcaaacagccttgtgtgatgacgcttctggaccaccaca 27349891
Query: 768 aaagtaactggaggctggtaatcagactccaatgatgcacaggcct 813
|| ||||| || ||||| ||||| | ||||| |||||||| ||||
Sbjct: 27349892 aaggtaacgggtggctgataatcggcttccaaagatgcacatgcct 27349937
Score = 79.8 bits (40), Expect = 3e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 811 cctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacac 870
||||||||||||||||||| || || |||||||| || || |||||||| ||||||||||
Sbjct: 27350014 cctttctaatggcatcaagctcataaaacagaacctgataaaactgtccttcactgacac 27350073
Query: 871 catccctg 878
||||||||
Sbjct: 27350074 catccctg 27350081
Score = 73.8 bits (37), Expect = 2e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 605 aatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttga 661
||||||||||||||| ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 35780673 aatgccagcatggctacacaggtagaagtcaaactcagttggatgacagatctttga 35780729
Score = 65.9 bits (33), Expect = 4e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 411 gtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcagga 470
||||| |||||||||||||| |||||||| || || || ||||| ||||| |||||||||
Sbjct: 27349129 gtatccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcagga 27349188
Query: 471 ggaac 475
|||||
Sbjct: 27349189 ggaac 27349193
Score = 63.9 bits (32), Expect = 2e-007
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 875 cctgtagaatatgatcctcttgggtttttgtccagtcgccctccagaaagaaatgagaag 934
|||||| ||||| ||||||| |||||| |||||||| |||||| |||||||||||||||
Sbjct: 27350155 cctgtaaaatataatcctctggggtttctgtccagttgccctcttgaaagaaatgagaag 27350214
Score = 61.9 bits (31), Expect = 6e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 401 gctgtcacttgtatctggctccatgtaaaaccgagctcggaaggctgccagatgagcata 460
||||||| ||||||||| ||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 35780217 gctgtcagatgtatctggttccatatagaaacgagcacggaaggcagccagatgagcata 35780276
Query: 461 gtatgcaggaggaac 475
|| ||||| |||||
Sbjct: 35780277 ataagcaggtggaac 35780291
Score = 50.1 bits (25), Expect = 0.002
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
|||||||| || | ||||||||| ||| | ||||| ||||||| || || ||||| |||
Sbjct: 35780487 tacgtgtagcaaaggttgttggtaagaatctgcaatgcatcagctgtgaagttgttttca 35780546
Query: 564 tcccacagaacatgataatgggcaggacg 592
||||||| ||||||||||| || |||||
Sbjct: 35780547 tcccacaagacatgataatgagctggacg 35780575
Score = 46.1 bits (23), Expect = 0.036
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 259 cttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcacag 318
||||||||||||||||||| || || || |||||||| || |||| | ||||| ||||
Sbjct: 27348977 cttagcagtagaacatgacacgtttgacattttccttcagatcaggaagcggccttacag 27349036
Query: 319 caacatt 325
|||||||
Sbjct: 27349037 caacatt 27349043
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 615 tggctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagt 673
||||| |||| |||||||||||||| |||| |||||||| ||||| || ||||||||
Sbjct: 3749325 tggctacacaagtagaaatcaaactgatttggttggcaaatatttgaatcaaccacagt 3749383
Score = 44.1 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 557 gttctcatcccacagaacatgataat 582
|||||| |||||||||||||||||||
Sbjct: 3749176 gttctcgtcccacagaacatgataat 3749201
>gb|AU091754.1|AU091754 AU091754 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12560, mRNA sequence
Length = 714
Score = 115 bits (58), Expect = 5e-023
Identities = 226/282 (80%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| ||||| ||||| || || |||||||| |||||||||||||| |||
Sbjct: 362 tctggctccatgtagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtgga 303
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| | || || ||||||||||||| ||||| ||||| || | |||||| || | ||
Sbjct: 302 acaacagaaacagagcgtgtgcaccgtgcataagtgtagcaaaggttgtttgtcaatgtc 243
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|||| | || || || || |||||||||||||| || || || || || || || |
Sbjct: 242 tgcatttcgtctgcagtgaaattgttctcatcccaaaggacgtggtagtgagctggccta 183
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|||||||||||||| ||||||||||| || ||||||||||||||||| | ||| |||||
Sbjct: 182 cttgttccctgaattccagcatggctacagaggtagaaatcaaactctgatgggtggcag 123
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccactt 695
|||||||| || || ||||| || |||| ||||| ||||||
Sbjct: 122 atctttgaatcaacaacagttccaggcaaaatgtttccactt 81
>gb|CA999687.1|CA999687 S234I_A02 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 463
Score = 115 bits (58), Expect = 5e-023
Identities = 226/282 (80%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| ||||| ||||| || || |||||||| |||||||||||||| |||
Sbjct: 387 tctggctccatgtagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtgga 328
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| | || || ||||||||||||| ||||| ||||| || | |||||| || | ||
Sbjct: 327 acaacagaaacagagcgtgtgcaccgtgcataagtgtagcaaaggttgtttgtcaatgtc 268
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|||| | || || || || |||||||||||||| || || || || || || || |
Sbjct: 267 tgcatttcgtctgcagtgaaattgttctcatcccaaaggacgtggtagtgagctggccta 208
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|||||||||||||| ||||||||||| || ||||||||||||||||| | ||| |||||
Sbjct: 207 cttgttccctgaattccagcatggctacagaggtagaaatcaaactctgatgggtggcag 148
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccactt 695
|||||||| || || ||||| || |||| ||||| ||||||
Sbjct: 147 atctttgaatcaacaacagttccaggcaaaatgtttccactt 106
>gb|CB641950.1|CB641950 OSJNEb01N22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01N22 3', mRNA sequence
Length = 813
Score = 115 bits (58), Expect = 5e-023
Identities = 226/282 (80%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| ||||| ||||| || || |||||||| |||||||||||||| |||
Sbjct: 393 tctggctccatgtagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtgga 452
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| | || || ||||||||||||| ||||| ||||| || | |||||| || | ||
Sbjct: 453 acaacagaaacagagcgtgtgcaccgtgcataagtgtagcaaaggttgtttgtcaatgtc 512
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|||| | || || || || |||||||||||||| || || || || || || || |
Sbjct: 513 tgcatttcgtctgcagtgaaattgttctcatcccaaaggacgtggtagtgagctggccta 572
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|||||||||||||| ||||||||||| || ||||||||||||||||| | ||| |||||
Sbjct: 573 cttgttccctgaattccagcatggctacagaggtagaaatcaaactctgatgggtggcag 632
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccactt 695
|||||||| || || ||||| || |||| ||||| ||||||
Sbjct: 633 atctttgaatcaacaacagttccaggcaaaatgtttccactt 674
>gb|CB671136.1|CB671136 OSJNEe04I24.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04I24 3', mRNA sequence
Length = 827
Score = 115 bits (58), Expect = 5e-023
Identities = 226/282 (80%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| ||||| ||||| || || |||||||| |||||||||||||| |||
Sbjct: 336 tctggctccatgtagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtgga 395
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| | || || ||||||||||||| ||||| ||||| || | |||||| || | ||
Sbjct: 396 acaacagaaacagagcgtgtgcaccgtgcataagtgtagcaaaggttgtttgtcaatgtc 455
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|||| | || || || || |||||||||||||| || || || || || || || |
Sbjct: 456 tgcatttcgtctgcagtgaaattgttctcatcccaaaggacgtggtagtgagctggccta 515
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|||||||||||||| ||||||||||| || ||||||||||||||||| | ||| |||||
Sbjct: 516 cttgttccctgaattccagcatggctacagaggtagaaatcaaactctgatgggtggcag 575
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccactt 695
|||||||| || || ||||| || |||| ||||| ||||||
Sbjct: 576 atctttgaatcaacaacagttccaggcaaaatgtttccactt 617
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 840 agaacttggtagaactgtccctcactgacaccatccctgtagaa 883
|||||||||||||| || || |||||||||||||||||||||||
Sbjct: 762 agaacttggtagaattggccttcactgacaccatccctgtagaa 805
>dbj|AB081950.1| Oryza sativa (japonica cultivar-group) OsPNH1 mRNA for ZLL/PNH
homologous protein, complete cds
Length = 3548
Score = 115 bits (58), Expect = 5e-023
Identities = 226/282 (80%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| ||||| ||||| || || |||||||| |||||||||||||| |||
Sbjct: 3148 tctggctccatgtagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtgga 3089
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| | || || ||||||||||||| ||||| ||||| || | |||||| || | ||
Sbjct: 3088 acaacagaaacagagcgtgtgcaccgtgcataagtgtagcaaaggttgtttgtcaatgtc 3029
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|||| | || || || || |||||||||||||| || || || || || || || |
Sbjct: 3028 tgcatttcgtctgcagtgaaattgttctcatcccaaaggacgtggtagtgagctggccta 2969
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|||||||||||||| ||||||||||| || ||||||||||||||||| | ||| |||||
Sbjct: 2968 cttgttccctgaattccagcatggctacagaggtagaaatcaaactctgatgggtggcag 2909
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccactt 695
|||||||| || || ||||| || |||| ||||| ||||||
Sbjct: 2908 atctttgaatcaacaacagttccaggcaaaatgtttccactt 2867
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 840 agaacttggtagaactgtccctcactgacaccatccctgtagaa 883
|||||||||||||| || || |||||||||||||||||||||||
Sbjct: 2722 agaacttggtagaattggccttcactgacaccatccctgtagaa 2679
>gb|CB641981.1|CB641981 OSJNEb01O19.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01O19 3', mRNA sequence
Length = 804
Score = 107 bits (54), Expect = 1e-020
Identities = 225/282 (79%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| ||||| ||||| || || |||||||| |||||||||||||| |||
Sbjct: 343 tctggctccatgtagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtgga 402
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| | || || ||||||||||||| ||||| ||||| || | |||||| || | ||
Sbjct: 403 acaacagaaacagagcgtgtgcaccgtgcataagtgtaccaaaggttgtttgtcaatgtc 462
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|||| | || || || || |||||||||||||| || || || || || || || |
Sbjct: 463 tgcatttcgtctgcagtgaaattgttctcatcccaaaggacgtggtagtgagctggccta 522
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|||||||||||||| ||||||||||| || ||||| ||||||||||| | ||| |||||
Sbjct: 523 cttgttccctgaattccagcatggctacagaggtataaatcaaactctgatgggtggcag 582
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccactt 695
|||||||| || || ||||| || |||| ||||| ||||||
Sbjct: 583 atctttgaatcaacaacagttccaggcaaaatgtttccactt 624
Score = 48.1 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 840 agaacttggtagaactgtccctcactgacaccatcc 875
|||||||||||||| || || |||||||||||||||
Sbjct: 769 agaacttggtagaattggccttcactgacaccatcc 804
>gb|AU101467.1|AU101467 AU101467 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50118, mRNA sequence
Length = 463
Score = 101 bits (51), Expect = 7e-019
Identities = 183/220 (83%), Gaps = 8/220 (3%)
Strand = Plus / Minus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 236 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 177
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggt-ggagggccac-ggcttg 375
|| |||||| ||| || |||||| | ||||| |||||| ||| |||||| |||| |
Sbjct: 176 gctacatttccag---caaccctggcgctgcgcanacctggtgggaaggccacgggctcg 120
Query: 376 tcgtagcaccgctcgccacagatccgctgtca-cttgtatctggctccatgtaaaa-ccg 433
| | ||| || ||||||| ||||| |||||| | || ||||||||||||||||| | |
Sbjct: 119 ttgcagctccactcgccattgatccactgtcagatggtctctggctccatgtaaaagcgg 60
Query: 434 agctcggaa-ggctgccagatgagcatagtatgcaggagg 472
||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 59 agctcggaagggctgccagatgagcatagtacgcaggagg 20
>gb|CF327924.1|CF327924 NACL--02-J19.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--02-J19, mRNA sequence
Length = 406
Score = 101 bits (51), Expect = 7e-019
Identities = 140/169 (82%), Gaps = 3/169 (1%)
Strand = Plus / Minus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 167 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 108
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||| || |||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 107 gctacatttccag---caaccctggcgctgcgcacacctggtggaaggccacggctcgtt 51
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgt 426
| ||| || ||||||| ||||| |||||| ||| |||||||||||||
Sbjct: 50 gcagctccactcgccattgatccactgtcagatgtctctggctccatgt 2
>gb|CF327925.1|CF327925 NACL--02-J19.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--02-J19, mRNA sequence
Length = 406
Score = 101 bits (51), Expect = 7e-019
Identities = 140/169 (82%), Gaps = 3/169 (1%)
Strand = Plus / Plus
Query: 258 tcttagcagtagaacatgacgcgcttcacgttttccttgagggcaggtaatggcctcaca 317
||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| ||
Sbjct: 240 tcttagcagtaaaacatgacacgcttcacgttttccttgagagcaggtagaggcctgacg 299
Query: 318 gcaacatttgcagcaccagccctggtgttgcgcgcccctggtggagggccacggcttgtc 377
|| |||||| ||| || |||||| | ||||| | ||||||||| |||||||||| ||
Sbjct: 300 gctacatttccag---caaccctggcgctgcgcacacctggtggaaggccacggctcgtt 356
Query: 378 gtagcaccgctcgccacagatccgctgtcacttgtatctggctccatgt 426
| ||| || ||||||| ||||| |||||| ||| |||||||||||||
Sbjct: 357 gcagctccactcgccattgatccactgtcagatgtctctggctccatgt 405
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,079,523
Number of Sequences: 438736
Number of extensions: 1079523
Number of successful extensions: 5611
Number of sequences better than 0.5: 127
Number of HSP's better than 0.5 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4868
Number of HSP's gapped (non-prelim): 714
length of query: 977
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 956
effective length of database: 2,791,206,460
effective search space: 2668393375760
effective search space used: 2668393375760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)