BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696657.2.1
(1531 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_107231.1| Oryza sativa (japonica cultivar-group) 129 5e-027
gb|AACV01014256.1| Oryza sativa (japonica cultivar-group) c... 129 5e-027
dbj|AP005466.2| Oryza sativa (japonica cultivar-group) geno... 129 5e-027
dbj|AP003608.3| Oryza sativa (japonica cultivar-group) geno... 129 5e-027
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 129 5e-027
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 129 5e-027
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 129 5e-027
gb|AU094002.1|AU094002 AU094002 Rice panicle at flowering s... 113 3e-022
dbj|AK069989.1| Oryza sativa (japonica cultivar-group) cDNA... 113 3e-022
gb|AACV01001330.1| Oryza sativa (japonica cultivar-group) c... 113 3e-022
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 113 3e-022
ref|XM_463287.1| Oryza sativa (japonica cultivar-group), p... 113 3e-022
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 113 3e-022
dbj|AP003562.3| Oryza sativa (japonica cultivar-group) geno... 113 3e-022
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 113 3e-022
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 113 3e-022
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 113 3e-022
dbj|AK072748.1| Oryza sativa (japonica cultivar-group) cDNA... 105 7e-020
gb|AU094117.1|AU094117 AU094117 Rice panicle at flowering s... 82 1e-012
dbj|AK072708.1| Oryza sativa (japonica cultivar-group) cDNA... 70 4e-009
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 70 4e-009
dbj|AP003626.3| Oryza sativa (japonica cultivar-group) geno... 70 4e-009
dbj|AP003616.4| Oryza sativa (japonica cultivar-group) geno... 70 4e-009
gb|AACV01014531.1| Oryza sativa (japonica cultivar-group) c... 70 4e-009
ref|XM_464471.1| Oryza sativa (japonica cultivar-group), mRNA 64 2e-007
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 62 9e-007
dbj|AP005929.3| Oryza sativa (japonica cultivar-group) geno... 62 9e-007
gb|AACV01014109.1| Oryza sativa (japonica cultivar-group) c... 62 9e-007
gb|CH401214.1| Oryza sativa (japonica cultivar-group) chrom... 62 9e-007
gb|AACV01000807.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
ref|NM_183645.1| Oryza sativa (japonica cultivar-group), p... 58 1e-005
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 58 1e-005
dbj|AP003140.2| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CB652533.1|CB652533 OSJNEc02J24.r OSJNEc Oryza sativa (j... 54 2e-004
gb|AC120530.3| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|AACV01022705.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|CH401261.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|AC146948.2| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|AU312180.1|AU312180 AU312180 Oryza sativa anther cDNA Or... 52 0.001
gb|C72992.1|C72992 C72992 Rice panicle at flowering stage O... 50 0.004
gb|C72981.2|C72981 C72981 Rice panicle at flowering stage O... 50 0.004
gb|AACV01014263.1| Oryza sativa (japonica cultivar-group) c... 50 0.004
gb|AACV01002829.1| Oryza sativa (japonica cultivar-group) c... 48 0.014
ref|NM_190223.1| Oryza sativa (japonica cultivar-group), p... 48 0.014
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 48 0.014
dbj|AP003407.3| Oryza sativa (japonica cultivar-group) geno... 48 0.014
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.014
dbj|AP004184.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
gb|AACV01003552.1| Oryza sativa (japonica cultivar-group) c... 46 0.056
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 46 0.056
dbj|AP004191.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AK119501.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.22
gb|AACV01022704.1| Oryza sativa (japonica cultivar-group) c... 44 0.22
>ref|NT_107231.1| Oryza sativa (japonica cultivar-group)
Length = 1372977
Score = 129 bits (65), Expect = 5e-027
Identities = 182/221 (82%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||| | |||| | | |||
Sbjct: 100316 gtcgatgatgatggggttagcaacgtcctccatcttgatgttcttgtaggtaaacttgga 100375
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
|| || ||||| || |||||||| |||| |||||||| || ||||| ||||| | ||
Sbjct: 100376 ggtggtgagcaccgaggcggcgtcctcgtaggacttgatccggacgccattggtagactt 100435
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
||||||||||||||| || |||| |||| |||||||||||||||||||||| | |||
Sbjct: 100436 cttgagcacgcagtttttgacggtgacgtcggtcacgtccttctcgtccttgtatctgcc 100495
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| ||||||||||||||| | ||||||||||||||||
Sbjct: 100496 caggctgccgacgctgatgccgtagccggggccgcaggtga 100536
Score = 105 bits (53), Expect = 7e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||||| |||| | | |||
Sbjct: 139901 gtcgatgatgatggggttagcaacgtcctccatcttgatgttctcgtaggtaaacttgga 139960
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
||| || ||||| || |||||||| | || |||||||| || ||||| ||||||| ||
Sbjct: 139961 ggcggtgagcaccgaggcggcgtcctcataggacttgatccggacgccattggtggactt 140020
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
|||||||||||||||| || || | || |||| ||||||||||||||||| | |||
Sbjct: 140021 cttgagcacgcagttcttgacggtaacatccgtcacatccttctcgtccttgtacctgcc 140080
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| |||||||||||||| || || || ||||||||||
Sbjct: 140081 caggctaccgacgctgatgccgtggccaggaccgcaggtga 140121
Score = 105 bits (53), Expect = 7e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||||| |||| | | |||
Sbjct: 110543 gtcgatgatgatggggttagcaacgtcctccatcttgatgttctcgtaggtaaacttgga 110602
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
||| || ||||| || |||||||| | || |||||||| || ||||| ||||||| ||
Sbjct: 110603 ggcggtgagcaccgaggcggcgtcctcataggacttgatccggacgccattggtggactt 110662
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
|||||||||||||||| || || | || |||| ||||||||||||||||| | |||
Sbjct: 110663 cttgagcacgcagttcttgacggtaacatccgtcacatccttctcgtccttgtacctgcc 110722
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| |||||||||||||| || || || ||||||||||
Sbjct: 110723 caggctaccgacgctgatgccgtggccaggaccgcaggtga 110763
Score = 81.8 bits (41), Expect = 1e-012
Identities = 128/157 (81%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||||||||| || |||||||||||||||| |||||||| |||| | |||||
Sbjct: 139669 tggcagtgcccttggcattcttgcagacggccatggtcttgttgtttgtgccagagtact 139728
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | || ||||||| |||| ||| || | || |||||||| ||||
Sbjct: 139729 cgaccttgatgtcattcaaggtgacgccggtgcacggcagcttgtcggagcagaggaggc 139788
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgatgtt 450
| | ||||||||||||||| || ||||||||||||||
Sbjct: 139789 taacggcctcgggcgtggaggaggtgccggtgatgtt 139825
Score = 81.8 bits (41), Expect = 1e-012
Identities = 128/157 (81%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||||||||| || |||||||||||||||| |||||||| |||| | |||||
Sbjct: 110311 tggcagtgcccttggcattcttgcagacggccatggtcttgttgtttgtgccagagtact 110370
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | || ||||||| |||| ||| || | || |||||||| ||||
Sbjct: 110371 cgaccttgatgtcattcaaggtgacgccggtgcacggcagcttgtcggagcagaggaggc 110430
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgatgtt 450
| | ||||||||||||||| || ||||||||||||||
Sbjct: 110431 taacggcctcgggcgtggaggaggtgccggtgatgtt 110467
Score = 67.9 bits (34), Expect = 2e-008
Identities = 124/154 (80%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||| ||||| || |||||||||||||||| |||||||| ||||| |||||||
Sbjct: 100085 tggcagtgcctttggcattcttgcagacggccatggtcttgttgtttttgccagcgtact 100144
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | | ||||||| |||| ||| || | || ||||||| ||||
Sbjct: 100145 cgacattgatgtcattcaaagtgacgccggtgcacggcagcttgtctgagcagaagaggc 100204
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgat 447
| | ||||||||||||||| || |||||||||||
Sbjct: 100205 taacggcctcgggcgtggaggaggtgccggtgat 100238
Score = 58.0 bits (29), Expect = 1e-005
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggag 847
|||| |||||| ||||||||||||||| || || || |||||||||||||||||||
Sbjct: 100575 gagatgcagtcatcgccggtgccgatgaccgtgtcgatgatgctgatcttggaggag 100631
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 803 tcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcctccgacgtggacg 862
||||||||||||||| || || | ||||||||||||||||||| | || | ||||| |
Sbjct: 110814 tcgccggtgccgatgaccgtgtcaatgatgctgatcttggaggagtcgcccatgtggatg 110873
Query: 863 ccgtccgtgttc 874
||||||||||||
Sbjct: 110874 ccgtccgtgttc 110885
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 140763 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 140819
Score = 50.1 bits (25), Expect = 0.004
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 140648 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 140704
Query: 1226 agagggccgaccaggtagtcgcccttgggga 1256
|| || || || | |||||||||||||||
Sbjct: 140705 aggggacccgtcaagaagtcgcccttgggga 140735
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 111405 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 111461
Score = 50.1 bits (25), Expect = 0.004
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 111290 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 111346
Query: 1226 agagggccgaccaggtagtcgcccttgggga 1256
|| || || || | |||||||||||||||
Sbjct: 111347 aggggacccgtcaagaagtcgcccttgggga 111377
Score = 48.1 bits (24), Expect = 0.014
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 803 tcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcctccgacgtggacg 862
||||||||||||||| || || | ||||||||||||||||||| | || | ||||| |
Sbjct: 140172 tcgccggtgccgatgaccgtgtcaatgatgctgatcttggaggagtcgcccatgtggatg 140231
Query: 863 ccgtccgtgttc 874
|| |||||||||
Sbjct: 140232 ccatccgtgttc 140243
>gb|AACV01014256.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014256, whole
genome shotgun sequence
Length = 44535
Score = 129 bits (65), Expect = 5e-027
Identities = 182/221 (82%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||| | |||| | | |||
Sbjct: 15507 gtcgatgatgatggggttagcaacgtcctccatcttgatgttcttgtaggtaaacttgga 15566
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
|| || ||||| || |||||||| |||| |||||||| || ||||| ||||| | ||
Sbjct: 15567 ggtggtgagcaccgaggcggcgtcctcgtaggacttgatccggacgccattggtagactt 15626
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
||||||||||||||| || |||| |||| |||||||||||||||||||||| | |||
Sbjct: 15627 cttgagcacgcagtttttgacggtgacgtcggtcacgtccttctcgtccttgtatctgcc 15686
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| ||||||||||||||| | ||||||||||||||||
Sbjct: 15687 caggctgccgacgctgatgccgtagccggggccgcaggtga 15727
Score = 105 bits (53), Expect = 7e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||||| |||| | | |||
Sbjct: 25744 gtcgatgatgatggggttagcaacgtcctccatcttgatgttctcgtaggtaaacttgga 25803
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
||| || ||||| || |||||||| | || |||||||| || ||||| ||||||| ||
Sbjct: 25804 ggcggtgagcaccgaggcggcgtcctcataggacttgatccggacgccattggtggactt 25863
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
|||||||||||||||| || || | || |||| ||||||||||||||||| | |||
Sbjct: 25864 cttgagcacgcagttcttgacggtaacatccgtcacatccttctcgtccttgtacctgcc 25923
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| |||||||||||||| || || || ||||||||||
Sbjct: 25924 caggctaccgacgctgatgccgtggccaggaccgcaggtga 25964
Score = 67.9 bits (34), Expect = 2e-008
Identities = 124/154 (80%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||| ||||| || |||||||||||||||| |||||||| ||||| |||||||
Sbjct: 15276 tggcagtgcctttggcattcttgcagacggccatggtcttgttgtttttgccagcgtact 15335
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | | ||||||| |||| ||| || | || ||||||| ||||
Sbjct: 15336 cgacattgatgtcattcaaagtgacgccggtgcacggcagcttgtctgagcagaagaggc 15395
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgat 447
| | ||||||||||||||| || |||||||||||
Sbjct: 15396 taacggcctcgggcgtggaggaggtgccggtgat 15429
Score = 58.0 bits (29), Expect = 1e-005
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggag 847
|||| |||||| ||||||||||||||| || || || |||||||||||||||||||
Sbjct: 15766 gagatgcagtcatcgccggtgccgatgaccgtgtcgatgatgctgatcttggaggag 15822
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 803 tcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcctccgacgtggacg 862
||||||||||||||| || || | ||||||||||||||||||| | || | ||||| |
Sbjct: 26015 tcgccggtgccgatgaccgtgtcaatgatgctgatcttggaggagtcgcccatgtggatg 26074
Query: 863 ccgtccgtgttc 874
||||||||||||
Sbjct: 26075 ccgtccgtgttc 26086
Score = 52.0 bits (26), Expect = 0.001
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgtt 339
|||| ||||||||||| || |||||||||||||||| ||||||||
Sbjct: 25512 tggcagtgcccttggcattcttgcagacggccatggtcttgttgtt 25557
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 26605 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 26661
Score = 48.1 bits (24), Expect = 0.014
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 26491 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 26547
Query: 1226 ag 1227
||
Sbjct: 26548 ag 26549
>dbj|AP005466.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1212_H09
Length = 129040
Score = 129 bits (65), Expect = 5e-027
Identities = 182/221 (82%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||| | |||| | | |||
Sbjct: 47826 gtcgatgatgatggggttagcaacgtcctccatcttgatgttcttgtaggtaaacttgga 47885
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
|| || ||||| || |||||||| |||| |||||||| || ||||| ||||| | ||
Sbjct: 47886 ggtggtgagcaccgaggcggcgtcctcgtaggacttgatccggacgccattggtagactt 47945
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
||||||||||||||| || |||| |||| |||||||||||||||||||||| | |||
Sbjct: 47946 cttgagcacgcagtttttgacggtgacgtcggtcacgtccttctcgtccttgtatctgcc 48005
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| ||||||||||||||| | ||||||||||||||||
Sbjct: 48006 caggctgccgacgctgatgccgtagccggggccgcaggtga 48046
Score = 105 bits (53), Expect = 7e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||||| |||| | | |||
Sbjct: 87411 gtcgatgatgatggggttagcaacgtcctccatcttgatgttctcgtaggtaaacttgga 87470
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
||| || ||||| || |||||||| | || |||||||| || ||||| ||||||| ||
Sbjct: 87471 ggcggtgagcaccgaggcggcgtcctcataggacttgatccggacgccattggtggactt 87530
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
|||||||||||||||| || || | || |||| ||||||||||||||||| | |||
Sbjct: 87531 cttgagcacgcagttcttgacggtaacatccgtcacatccttctcgtccttgtacctgcc 87590
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| |||||||||||||| || || || ||||||||||
Sbjct: 87591 caggctaccgacgctgatgccgtggccaggaccgcaggtga 87631
Score = 105 bits (53), Expect = 7e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||||| |||| | | |||
Sbjct: 58053 gtcgatgatgatggggttagcaacgtcctccatcttgatgttctcgtaggtaaacttgga 58112
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
||| || ||||| || |||||||| | || |||||||| || ||||| ||||||| ||
Sbjct: 58113 ggcggtgagcaccgaggcggcgtcctcataggacttgatccggacgccattggtggactt 58172
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
|||||||||||||||| || || | || |||| ||||||||||||||||| | |||
Sbjct: 58173 cttgagcacgcagttcttgacggtaacatccgtcacatccttctcgtccttgtacctgcc 58232
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| |||||||||||||| || || || ||||||||||
Sbjct: 58233 caggctaccgacgctgatgccgtggccaggaccgcaggtga 58273
Score = 81.8 bits (41), Expect = 1e-012
Identities = 128/157 (81%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||||||||| || |||||||||||||||| |||||||| |||| | |||||
Sbjct: 87179 tggcagtgcccttggcattcttgcagacggccatggtcttgttgtttgtgccagagtact 87238
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | || ||||||| |||| ||| || | || |||||||| ||||
Sbjct: 87239 cgaccttgatgtcattcaaggtgacgccggtgcacggcagcttgtcggagcagaggaggc 87298
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgatgtt 450
| | ||||||||||||||| || ||||||||||||||
Sbjct: 87299 taacggcctcgggcgtggaggaggtgccggtgatgtt 87335
Score = 81.8 bits (41), Expect = 1e-012
Identities = 128/157 (81%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||||||||| || |||||||||||||||| |||||||| |||| | |||||
Sbjct: 57821 tggcagtgcccttggcattcttgcagacggccatggtcttgttgtttgtgccagagtact 57880
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | || ||||||| |||| ||| || | || |||||||| ||||
Sbjct: 57881 cgaccttgatgtcattcaaggtgacgccggtgcacggcagcttgtcggagcagaggaggc 57940
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgatgtt 450
| | ||||||||||||||| || ||||||||||||||
Sbjct: 57941 taacggcctcgggcgtggaggaggtgccggtgatgtt 57977
Score = 67.9 bits (34), Expect = 2e-008
Identities = 124/154 (80%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||| ||||| || |||||||||||||||| |||||||| ||||| |||||||
Sbjct: 47595 tggcagtgcctttggcattcttgcagacggccatggtcttgttgtttttgccagcgtact 47654
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | | ||||||| |||| ||| || | || ||||||| ||||
Sbjct: 47655 cgacattgatgtcattcaaagtgacgccggtgcacggcagcttgtctgagcagaagaggc 47714
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgat 447
| | ||||||||||||||| || |||||||||||
Sbjct: 47715 taacggcctcgggcgtggaggaggtgccggtgat 47748
Score = 58.0 bits (29), Expect = 1e-005
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggag 847
|||| |||||| ||||||||||||||| || || || |||||||||||||||||||
Sbjct: 48085 gagatgcagtcatcgccggtgccgatgaccgtgtcgatgatgctgatcttggaggag 48141
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 803 tcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcctccgacgtggacg 862
||||||||||||||| || || | ||||||||||||||||||| | || | ||||| |
Sbjct: 58324 tcgccggtgccgatgaccgtgtcaatgatgctgatcttggaggagtcgcccatgtggatg 58383
Query: 863 ccgtccgtgttc 874
||||||||||||
Sbjct: 58384 ccgtccgtgttc 58395
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 88273 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 88329
Score = 50.1 bits (25), Expect = 0.004
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 88158 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 88214
Query: 1226 agagggccgaccaggtagtcgcccttgggga 1256
|| || || || | |||||||||||||||
Sbjct: 88215 aggggacccgtcaagaagtcgcccttgggga 88245
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 58915 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 58971
Score = 50.1 bits (25), Expect = 0.004
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 58800 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 58856
Query: 1226 agagggccgaccaggtagtcgcccttgggga 1256
|| || || || | |||||||||||||||
Sbjct: 58857 aggggacccgtcaagaagtcgcccttgggga 58887
Score = 48.1 bits (24), Expect = 0.014
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 803 tcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcctccgacgtggacg 862
||||||||||||||| || || | ||||||||||||||||||| | || | ||||| |
Sbjct: 87682 tcgccggtgccgatgaccgtgtcaatgatgctgatcttggaggagtcgcccatgtggatg 87741
Query: 863 ccgtccgtgttc 874
|| |||||||||
Sbjct: 87742 ccatccgtgttc 87753
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0007G12
Length = 111819
Score = 129 bits (65), Expect = 5e-027
Identities = 182/221 (82%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||| | |||| | | |||
Sbjct: 100316 gtcgatgatgatggggttagcaacgtcctccatcttgatgttcttgtaggtaaacttgga 100375
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
|| || ||||| || |||||||| |||| |||||||| || ||||| ||||| | ||
Sbjct: 100376 ggtggtgagcaccgaggcggcgtcctcgtaggacttgatccggacgccattggtagactt 100435
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
||||||||||||||| || |||| |||| |||||||||||||||||||||| | |||
Sbjct: 100436 cttgagcacgcagtttttgacggtgacgtcggtcacgtccttctcgtccttgtatctgcc 100495
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| ||||||||||||||| | ||||||||||||||||
Sbjct: 100496 caggctgccgacgctgatgccgtagccggggccgcaggtga 100536
Score = 105 bits (53), Expect = 7e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||||| |||| | | |||
Sbjct: 110543 gtcgatgatgatggggttagcaacgtcctccatcttgatgttctcgtaggtaaacttgga 110602
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
||| || ||||| || |||||||| | || |||||||| || ||||| ||||||| ||
Sbjct: 110603 ggcggtgagcaccgaggcggcgtcctcataggacttgatccggacgccattggtggactt 110662
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
|||||||||||||||| || || | || |||| ||||||||||||||||| | |||
Sbjct: 110663 cttgagcacgcagttcttgacggtaacatccgtcacatccttctcgtccttgtacctgcc 110722
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| |||||||||||||| || || || ||||||||||
Sbjct: 110723 caggctaccgacgctgatgccgtggccaggaccgcaggtga 110763
Score = 81.8 bits (41), Expect = 1e-012
Identities = 128/157 (81%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||||||||| || |||||||||||||||| |||||||| |||| | |||||
Sbjct: 110311 tggcagtgcccttggcattcttgcagacggccatggtcttgttgtttgtgccagagtact 110370
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | || ||||||| |||| ||| || | || |||||||| ||||
Sbjct: 110371 cgaccttgatgtcattcaaggtgacgccggtgcacggcagcttgtcggagcagaggaggc 110430
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgatgtt 450
| | ||||||||||||||| || ||||||||||||||
Sbjct: 110431 taacggcctcgggcgtggaggaggtgccggtgatgtt 110467
Score = 67.9 bits (34), Expect = 2e-008
Identities = 124/154 (80%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||| ||||| || |||||||||||||||| |||||||| ||||| |||||||
Sbjct: 100085 tggcagtgcctttggcattcttgcagacggccatggtcttgttgtttttgccagcgtact 100144
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | | ||||||| |||| ||| || | || ||||||| ||||
Sbjct: 100145 cgacattgatgtcattcaaagtgacgccggtgcacggcagcttgtctgagcagaagaggc 100204
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgat 447
| | ||||||||||||||| || |||||||||||
Sbjct: 100205 taacggcctcgggcgtggaggaggtgccggtgat 100238
Score = 58.0 bits (29), Expect = 1e-005
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggag 847
|||| |||||| ||||||||||||||| || || || |||||||||||||||||||
Sbjct: 100575 gagatgcagtcatcgccggtgccgatgaccgtgtcgatgatgctgatcttggaggag 100631
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 803 tcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcctccgacgtggacg 862
||||||||||||||| || || | ||||||||||||||||||| | || | ||||| |
Sbjct: 110814 tcgccggtgccgatgaccgtgtcaatgatgctgatcttggaggagtcgcccatgtggatg 110873
Query: 863 ccgtccgtgttc 874
||||||||||||
Sbjct: 110874 ccgtccgtgttc 110885
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 111405 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 111461
Score = 50.1 bits (25), Expect = 0.004
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 111290 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 111346
Query: 1226 agagggccgaccaggtagtcgcccttgggga 1256
|| || || || | |||||||||||||||
Sbjct: 111347 aggggacccgtcaagaagtcgcccttgggga 111377
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 129 bits (65), Expect = 5e-027
Identities = 182/221 (82%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||| | |||| | | |||
Sbjct: 1633722 gtcgatgatgatggggttagcaacgtcctccatcttgatgttcttgtaggtaaacttgga 1633781
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
|| || ||||| || |||||||| |||| |||||||| || ||||| ||||| | ||
Sbjct: 1633782 ggtggtgagcaccgaggcggcgtcctcgtaggacttgatccggacgccattggtagactt 1633841
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
||||||||||||||| || |||| |||| |||||||||||||||||||||| | |||
Sbjct: 1633842 cttgagcacgcagtttttgacggtgacgtcggtcacgtccttctcgtccttgtatctgcc 1633901
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| ||||||||||||||| | ||||||||||||||||
Sbjct: 1633902 caggctgccgacgctgatgccgtagccggggccgcaggtga 1633942
Score = 105 bits (53), Expect = 7e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||||| |||| | | |||
Sbjct: 1643959 gtcgatgatgatggggttagcaacgtcctccatcttgatgttctcgtaggtaaacttgga 1644018
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
||| || ||||| || |||||||| | || |||||||| || ||||| ||||||| ||
Sbjct: 1644019 ggcggtgagcaccgaggcggcgtcctcataggacttgatccggacgccattggtggactt 1644078
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
|||||||||||||||| || || | || |||| ||||||||||||||||| | |||
Sbjct: 1644079 cttgagcacgcagttcttgacggtaacatccgtcacatccttctcgtccttgtacctgcc 1644138
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| |||||||||||||| || || || ||||||||||
Sbjct: 1644139 caggctaccgacgctgatgccgtggccaggaccgcaggtga 1644179
Score = 69.9 bits (35), Expect = 4e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 694 ctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||||||||||| ||||| |||| ||||| ||||||||| || ||||||||||||||||
Sbjct: 5323109 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtga 5323051
Score = 67.9 bits (34), Expect = 2e-008
Identities = 124/154 (80%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||| ||||| || |||||||||||||||| |||||||| ||||| |||||||
Sbjct: 1633491 tggcagtgcctttggcattcttgcagacggccatggtcttgttgtttttgccagcgtact 1633550
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | | ||||||| |||| ||| || | || ||||||| ||||
Sbjct: 1633551 cgacattgatgtcattcaaagtgacgccggtgcacggcagcttgtctgagcagaagaggc 1633610
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgat 447
| | ||||||||||||||| || |||||||||||
Sbjct: 1633611 taacggcctcgggcgtggaggaggtgccggtgat 1633644
Score = 58.0 bits (29), Expect = 1e-005
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggag 847
|||| |||||| ||||||||||||||| || || || |||||||||||||||||||
Sbjct: 1633981 gagatgcagtcatcgccggtgccgatgaccgtgtcgatgatgctgatcttggaggag 1634037
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 803 tcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcctccgacgtggacg 862
||||||||||||||| || || | ||||||||||||||||||| | || | ||||| |
Sbjct: 1644230 tcgccggtgccgatgaccgtgtcaatgatgctgatcttggaggagtcgcccatgtggatg 1644289
Query: 863 ccgtccgtgttc 874
||||||||||||
Sbjct: 1644290 ccgtccgtgttc 1644301
Score = 54.0 bits (27), Expect = 2e-004
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcct 850
|||| |||||||||||||||||||||||| | | | |||| |||||||||||||| |
Sbjct: 5323012 gagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatcttggaggagtcg 5322953
Query: 851 ccgacgtggacgccgtccgtgtt 873
|| | ||||| |||||| |||||
Sbjct: 5322952 cccatgtggatgccgtcggtgtt 5322930
Score = 52.0 bits (26), Expect = 0.001
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgtt 339
|||| ||||||||||| || |||||||||||||||| ||||||||
Sbjct: 1643727 tggcagtgcccttggcattcttgcagacggccatggtcttgttgtt 1643772
Score = 50.1 bits (25), Expect = 0.004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1346 gcgccgagcttggagatgtcgaacgtcccgccg 1378
||||||||||||| |||||||||||| ||||||
Sbjct: 5321901 gcgccgagcttggtgatgtcgaacgtgccgccg 5321869
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 1706643 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 1706699
Score = 50.1 bits (25), Expect = 0.004
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 1706528 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 1706584
Query: 1226 agagggccgaccaggtagtcgcccttgggga 1256
|| || || || | |||||||||||||||
Sbjct: 1706585 aggggacccgtcaagaagtcgcccttgggga 1706615
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 1644820 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 1644876
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1151 aggtcgtttgatcccagcaggttgccatccagctggatgg 1190
|||||||| || |||||||||||||| || ||||||||||
Sbjct: 5322093 aggtcgttggagcccagcaggttgccgtcgagctggatgg 5322054
Score = 48.1 bits (24), Expect = 0.014
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 1644706 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 1644762
Query: 1226 ag 1227
||
Sbjct: 1644763 ag 1644764
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 722 acgctgatgccctgcccggggccgca 747
||||||||||| ||||||||||||||
Sbjct: 5318821 acgctgatgccgtgcccggggccgca 5318796
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 129 bits (65), Expect = 5e-027
Identities = 182/221 (82%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||| | |||| | | |||
Sbjct: 19332459 gtcgatgatgatggggttagcaacgtcctccatcttgatgttcttgtaggtaaacttgga 19332518
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
|| || ||||| || |||||||| |||| |||||||| || ||||| ||||| | ||
Sbjct: 19332519 ggtggtgagcaccgaggcggcgtcctcgtaggacttgatccggacgccattggtagactt 19332578
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
||||||||||||||| || |||| |||| |||||||||||||||||||||| | |||
Sbjct: 19332579 cttgagcacgcagtttttgacggtgacgtcggtcacgtccttctcgtccttgtatctgcc 19332638
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| ||||||||||||||| | ||||||||||||||||
Sbjct: 19332639 caggctgccgacgctgatgccgtagccggggccgcaggtga 19332679
Score = 105 bits (53), Expect = 7e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||||| |||| | | |||
Sbjct: 19342696 gtcgatgatgatggggttagcaacgtcctccatcttgatgttctcgtaggtaaacttgga 19342755
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
||| || ||||| || |||||||| | || |||||||| || ||||| ||||||| ||
Sbjct: 19342756 ggcggtgagcaccgaggcggcgtcctcataggacttgatccggacgccattggtggactt 19342815
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
|||||||||||||||| || || | || |||| ||||||||||||||||| | |||
Sbjct: 19342816 cttgagcacgcagttcttgacggtaacatccgtcacatccttctcgtccttgtacctgcc 19342875
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| |||||||||||||| || || || ||||||||||
Sbjct: 19342876 caggctaccgacgctgatgccgtggccaggaccgcaggtga 19342916
Score = 69.9 bits (35), Expect = 4e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 694 ctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||||||||||| ||||| |||| ||||| ||||||||| || ||||||||||||||||
Sbjct: 23021846 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtga 23021788
Score = 67.9 bits (34), Expect = 2e-008
Identities = 124/154 (80%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||| ||||| || |||||||||||||||| |||||||| ||||| |||||||
Sbjct: 19332228 tggcagtgcctttggcattcttgcagacggccatggtcttgttgtttttgccagcgtact 19332287
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | | ||||||| |||| ||| || | || ||||||| ||||
Sbjct: 19332288 cgacattgatgtcattcaaagtgacgccggtgcacggcagcttgtctgagcagaagaggc 19332347
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgat 447
| | ||||||||||||||| || |||||||||||
Sbjct: 19332348 taacggcctcgggcgtggaggaggtgccggtgat 19332381
Score = 61.9 bits (31), Expect = 9e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 777 acccgggcccaatcgagacgcagtcgtcgccggtgccga 815
|||||||||| || |||||||||||||||||||||||||
Sbjct: 17502703 acccgggcccgatggagacgcagtcgtcgccggtgccga 17502665
Score = 58.0 bits (29), Expect = 1e-005
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggag 847
|||| |||||| ||||||||||||||| || || || |||||||||||||||||||
Sbjct: 19332718 gagatgcagtcatcgccggtgccgatgaccgtgtcgatgatgctgatcttggaggag 19332774
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 803 tcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcctccgacgtggacg 862
||||||||||||||| || || | ||||||||||||||||||| | || | ||||| |
Sbjct: 19342967 tcgccggtgccgatgaccgtgtcaatgatgctgatcttggaggagtcgcccatgtggatg 19343026
Query: 863 ccgtccgtgttc 874
||||||||||||
Sbjct: 19343027 ccgtccgtgttc 19343038
Score = 54.0 bits (27), Expect = 2e-004
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcct 850
|||| |||||||||||||||||||||||| | | | |||| |||||||||||||| |
Sbjct: 23021749 gagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatcttggaggagtcg 23021690
Query: 851 ccgacgtggacgccgtccgtgtt 873
|| | ||||| |||||| |||||
Sbjct: 23021689 cccatgtggatgccgtcggtgtt 23021667
Score = 52.0 bits (26), Expect = 0.001
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgtt 339
|||| ||||||||||| || |||||||||||||||| ||||||||
Sbjct: 19342464 tggcagtgcccttggcattcttgcagacggccatggtcttgttgtt 19342509
Score = 50.1 bits (25), Expect = 0.004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1346 gcgccgagcttggagatgtcgaacgtcccgccg 1378
||||||||||||| |||||||||||| ||||||
Sbjct: 23020638 gcgccgagcttggtgatgtcgaacgtgccgccg 23020606
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 19405380 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 19405436
Score = 50.1 bits (25), Expect = 0.004
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 19405265 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 19405321
Query: 1226 agagggccgaccaggtagtcgcccttgggga 1256
|| || || || | |||||||||||||||
Sbjct: 19405322 aggggacccgtcaagaagtcgcccttgggga 19405352
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 19343557 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 19343613
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1151 aggtcgtttgatcccagcaggttgccatccagctggatgg 1190
|||||||| || |||||||||||||| || ||||||||||
Sbjct: 23020830 aggtcgttggagcccagcaggttgccgtcgagctggatgg 23020791
Score = 48.1 bits (24), Expect = 0.014
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 19343443 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 19343499
Query: 1226 ag 1227
||
Sbjct: 19343500 ag 19343501
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 722 acgctgatgccctgcccggggccgca 747
||||||||||| ||||||||||||||
Sbjct: 23017558 acgctgatgccgtgcccggggccgca 23017533
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 129 bits (65), Expect = 5e-027
Identities = 182/221 (82%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||| | |||| | | |||
Sbjct: 20234316 gtcgatgatgatggggttagcaacgtcctccatcttgatgttcttgtaggtaaacttgga 20234375
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
|| || ||||| || |||||||| |||| |||||||| || ||||| ||||| | ||
Sbjct: 20234376 ggtggtgagcaccgaggcggcgtcctcgtaggacttgatccggacgccattggtagactt 20234435
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
||||||||||||||| || |||| |||| |||||||||||||||||||||| | |||
Sbjct: 20234436 cttgagcacgcagtttttgacggtgacgtcggtcacgtccttctcgtccttgtatctgcc 20234495
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| ||||||||||||||| | ||||||||||||||||
Sbjct: 20234496 caggctgccgacgctgatgccgtagccggggccgcaggtga 20234536
Score = 105 bits (53), Expect = 7e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||||| |||| | | |||
Sbjct: 20273901 gtcgatgatgatggggttagcaacgtcctccatcttgatgttctcgtaggtaaacttgga 20273960
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
||| || ||||| || |||||||| | || |||||||| || ||||| ||||||| ||
Sbjct: 20273961 ggcggtgagcaccgaggcggcgtcctcataggacttgatccggacgccattggtggactt 20274020
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
|||||||||||||||| || || | || |||| ||||||||||||||||| | |||
Sbjct: 20274021 cttgagcacgcagttcttgacggtaacatccgtcacatccttctcgtccttgtacctgcc 20274080
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| |||||||||||||| || || || ||||||||||
Sbjct: 20274081 caggctaccgacgctgatgccgtggccaggaccgcaggtga 20274121
Score = 105 bits (53), Expect = 7e-020
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||||| |||| | | |||
Sbjct: 20244543 gtcgatgatgatggggttagcaacgtcctccatcttgatgttctcgtaggtaaacttgga 20244602
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
||| || ||||| || |||||||| | || |||||||| || ||||| ||||||| ||
Sbjct: 20244603 ggcggtgagcaccgaggcggcgtcctcataggacttgatccggacgccattggtggactt 20244662
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
|||||||||||||||| || || | || |||| ||||||||||||||||| | |||
Sbjct: 20244663 cttgagcacgcagttcttgacggtaacatccgtcacatccttctcgtccttgtacctgcc 20244722
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| |||||||||||||| || || || ||||||||||
Sbjct: 20244723 caggctaccgacgctgatgccgtggccaggaccgcaggtga 20244763
Score = 81.8 bits (41), Expect = 1e-012
Identities = 128/157 (81%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||||||||| || |||||||||||||||| |||||||| |||| | |||||
Sbjct: 20273669 tggcagtgcccttggcattcttgcagacggccatggtcttgttgtttgtgccagagtact 20273728
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | || ||||||| |||| ||| || | || |||||||| ||||
Sbjct: 20273729 cgaccttgatgtcattcaaggtgacgccggtgcacggcagcttgtcggagcagaggaggc 20273788
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgatgtt 450
| | ||||||||||||||| || ||||||||||||||
Sbjct: 20273789 taacggcctcgggcgtggaggaggtgccggtgatgtt 20273825
Score = 81.8 bits (41), Expect = 1e-012
Identities = 128/157 (81%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||||||||| || |||||||||||||||| |||||||| |||| | |||||
Sbjct: 20244311 tggcagtgcccttggcattcttgcagacggccatggtcttgttgtttgtgccagagtact 20244370
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | || ||||||| |||| ||| || | || |||||||| ||||
Sbjct: 20244371 cgaccttgatgtcattcaaggtgacgccggtgcacggcagcttgtcggagcagaggaggc 20244430
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgatgtt 450
| | ||||||||||||||| || ||||||||||||||
Sbjct: 20244431 taacggcctcgggcgtggaggaggtgccggtgatgtt 20244467
Score = 69.9 bits (35), Expect = 4e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 694 ctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||||||||||| ||||| |||| ||||| ||||||||| || ||||||||||||||||
Sbjct: 24001811 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtga 24001753
Score = 67.9 bits (34), Expect = 2e-008
Identities = 124/154 (80%)
Strand = Plus / Plus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||| ||||| || |||||||||||||||| |||||||| ||||| |||||||
Sbjct: 20234085 tggcagtgcctttggcattcttgcagacggccatggtcttgttgtttttgccagcgtact 20234144
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | | ||||||| |||| ||| || | || ||||||| ||||
Sbjct: 20234145 cgacattgatgtcattcaaagtgacgccggtgcacggcagcttgtctgagcagaagaggc 20234204
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgat 447
| | ||||||||||||||| || |||||||||||
Sbjct: 20234205 taacggcctcgggcgtggaggaggtgccggtgat 20234238
Score = 61.9 bits (31), Expect = 9e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 777 acccgggcccaatcgagacgcagtcgtcgccggtgccga 815
|||||||||| || |||||||||||||||||||||||||
Sbjct: 17969544 acccgggcccgatggagacgcagtcgtcgccggtgccga 17969506
Score = 58.0 bits (29), Expect = 1e-005
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggag 847
|||| |||||| ||||||||||||||| || || || |||||||||||||||||||
Sbjct: 20234575 gagatgcagtcatcgccggtgccgatgaccgtgtcgatgatgctgatcttggaggag 20234631
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 803 tcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcctccgacgtggacg 862
||||||||||||||| || || | ||||||||||||||||||| | || | ||||| |
Sbjct: 20244814 tcgccggtgccgatgaccgtgtcaatgatgctgatcttggaggagtcgcccatgtggatg 20244873
Query: 863 ccgtccgtgttc 874
||||||||||||
Sbjct: 20244874 ccgtccgtgttc 20244885
Score = 54.0 bits (27), Expect = 2e-004
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcct 850
|||| |||||||||||||||||||||||| | | | |||| |||||||||||||| |
Sbjct: 24001714 gagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatcttggaggagtcg 24001655
Query: 851 ccgacgtggacgccgtccgtgtt 873
|| | ||||| |||||| |||||
Sbjct: 24001654 cccatgtggatgccgtcggtgtt 24001632
Score = 50.1 bits (25), Expect = 0.004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1346 gcgccgagcttggagatgtcgaacgtcccgccg 1378
||||||||||||| |||||||||||| ||||||
Sbjct: 24000603 gcgccgagcttggtgatgtcgaacgtgccgccg 24000571
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 20274763 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 20274819
Score = 50.1 bits (25), Expect = 0.004
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 20274648 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 20274704
Query: 1226 agagggccgaccaggtagtcgcccttgggga 1256
|| || || || | |||||||||||||||
Sbjct: 20274705 aggggacccgtcaagaagtcgcccttgggga 20274735
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 20245405 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 20245461
Score = 50.1 bits (25), Expect = 0.004
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 20245290 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 20245346
Query: 1226 agagggccgaccaggtagtcgcccttgggga 1256
|| || || || | |||||||||||||||
Sbjct: 20245347 aggggacccgtcaagaagtcgcccttgggga 20245377
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1151 aggtcgtttgatcccagcaggttgccatccagctggatgg 1190
|||||||| || |||||||||||||| || ||||||||||
Sbjct: 24000795 aggtcgttggagcccagcaggttgccgtcgagctggatgg 24000756
Score = 48.1 bits (24), Expect = 0.014
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 803 tcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcctccgacgtggacg 862
||||||||||||||| || || | ||||||||||||||||||| | || | ||||| |
Sbjct: 20274172 tcgccggtgccgatgaccgtgtcaatgatgctgatcttggaggagtcgcccatgtggatg 20274231
Query: 863 ccgtccgtgttc 874
|| |||||||||
Sbjct: 20274232 ccatccgtgttc 20274243
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 722 acgctgatgccctgcccggggccgca 747
||||||||||| ||||||||||||||
Sbjct: 23997523 acgctgatgccgtgcccggggccgca 23997498
>gb|AU094002.1|AU094002 AU094002 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1822, mRNA sequence
Length = 675
Score = 113 bits (57), Expect = 3e-022
Identities = 150/181 (82%)
Strand = Plus / Minus
Query: 290 cccttggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcg 349
||||||| | |||||||||||||| |||||||||||||||| ||||||| ||||||| ||
Sbjct: 429 cccttggagatgcccttggcgttggtgcagacggccatggtcttgttgtccttgccgtcg 370
Query: 350 tactccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagc 409
|||| || |||||| |||| || | ||||||||| ||| || || ||||||||
Sbjct: 369 tacttcaggttgacgtcgagcagctccatgccgctgcagggcagctggtcagagcagagt 310
Query: 410 aggctgatggcctcgggcgtggacgacgtgccggtgatgttgcggaacgtgacgtccttg 469
||||||| |||||| |||||| || ||||||||||||||||||||||| |||| ||||
Sbjct: 309 aggctgacggcctccggcgtgttggaggtgccggtgatgttgcggaacgtcacgttcttg 250
Query: 470 a 470
|
Sbjct: 249 a 249
>dbj|AK069989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037D20, full
insert sequence
Length = 1459
Score = 113 bits (57), Expect = 3e-022
Identities = 150/181 (82%)
Strand = Plus / Minus
Query: 290 cccttggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcg 349
||||||| | |||||||||||||| |||||||||||||||| ||||||| ||||||| ||
Sbjct: 1245 cccttggagatgcccttggcgttggtgcagacggccatggtcttgttgtccttgccgtcg 1186
Query: 350 tactccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagc 409
|||| || |||||| |||| || | ||||||||| ||| || || ||||||||
Sbjct: 1185 tacttcaggttgacgtcgagcagctccatgccgctgcagggcagctggtcagagcagagt 1126
Query: 410 aggctgatggcctcgggcgtggacgacgtgccggtgatgttgcggaacgtgacgtccttg 469
||||||| |||||| |||||| || ||||||||||||||||||||||| |||| ||||
Sbjct: 1125 aggctgacggcctccggcgtgttggaggtgccggtgatgttgcggaacgtcacgttcttg 1066
Query: 470 a 470
|
Sbjct: 1065 a 1065
Score = 83.8 bits (42), Expect = 3e-013
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 620 tacgacttgatgcgcacgccgttggtggtgttcttgagcacgcagttccgcaccgtgatg 679
|||||| |||| || |||||||||| |||||| ||||||||||| || ||||| | |
Sbjct: 918 tacgacctgatccggacgccgttggaggtgttgcggagcacgcagtcgcggaccgtcacg 859
Query: 680 tcgctcacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccg 739
|| |||||||||||||||||||| | | ||| ||||| || |||||||| |||||||||
Sbjct: 858 tccgtcacgtccttctcgtccttgaacctgcccaggcaccccacgctgatcccctgcccg 799
Query: 740 gggccgcaggtgat 753
|| || ||||||||
Sbjct: 798 ggcccacaggtgat 785
>gb|AACV01001330.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001330, whole
genome shotgun sequence
Length = 59730
Score = 113 bits (57), Expect = 3e-022
Identities = 150/181 (82%)
Strand = Plus / Plus
Query: 290 cccttggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcg 349
||||||| | |||||||||||||| |||||||||||||||| ||||||| ||||||| ||
Sbjct: 24881 cccttggagatgcccttggcgttggtgcagacggccatggtcttgttgtccttgccgtcg 24940
Query: 350 tactccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagc 409
|||| || |||||| |||| || | ||||||||| ||| || || ||||||||
Sbjct: 24941 tacttcaggttgacgtcgagcagctccatgccgctgcagggcagctggtcagagcagagt 25000
Query: 410 aggctgatggcctcgggcgtggacgacgtgccggtgatgttgcggaacgtgacgtccttg 469
||||||| |||||| |||||| || ||||||||||||||||||||||| |||| ||||
Sbjct: 25001 aggctgacggcctccggcgtgttggaggtgccggtgatgttgcggaacgtcacgttcttg 25060
Query: 470 a 470
|
Sbjct: 25061 a 25061
Score = 91.7 bits (46), Expect = 1e-015
Identities = 112/134 (83%)
Strand = Plus / Plus
Query: 620 tacgacttgatgcgcacgccgttggtggtgttcttgagcacgcagttccgcaccgtgatg 679
||||||||||| || |||||||||| |||||| ||||||||||| || ||||| | |
Sbjct: 25208 tacgacttgatccggacgccgttggaggtgttgcggagcacgcagtcgcggaccgtcacg 25267
Query: 680 tcgctcacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccg 739
|| |||||||||||||||||||| | | ||| ||||| || |||||||| |||||||||
Sbjct: 25268 tccgtcacgtccttctcgtccttgaacctgcccaggcaccccacgctgatcccctgcccg 25327
Query: 740 gggccgcaggtgat 753
|| || ||||||||
Sbjct: 25328 ggcccacaggtgat 25341
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 113 bits (57), Expect = 3e-022
Identities = 150/181 (82%)
Strand = Plus / Plus
Query: 290 cccttggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcg 349
||||||| | |||||||||||||| |||||||||||||||| ||||||| ||||||| ||
Sbjct: 18427876 cccttggagatgcccttggcgttggtgcagacggccatggtcttgttgtccttgccgtcg 18427935
Query: 350 tactccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagc 409
|||| || |||||| |||| || | ||||||||| ||| || || ||||||||
Sbjct: 18427936 tacttcaggttgacgtcgagcagctccatgccgctgcagggcagctggtcagagcagagt 18427995
Query: 410 aggctgatggcctcgggcgtggacgacgtgccggtgatgttgcggaacgtgacgtccttg 469
||||||| |||||| |||||| || ||||||||||||||||||||||| |||| ||||
Sbjct: 18427996 aggctgacggcctccggcgtgttggaggtgccggtgatgttgcggaacgtcacgttcttg 18428055
Query: 470 a 470
|
Sbjct: 18428056 a 18428056
Score = 91.7 bits (46), Expect = 1e-015
Identities = 112/134 (83%)
Strand = Plus / Plus
Query: 620 tacgacttgatgcgcacgccgttggtggtgttcttgagcacgcagttccgcaccgtgatg 679
||||||||||| || |||||||||| |||||| ||||||||||| || ||||| | |
Sbjct: 18428203 tacgacttgatccggacgccgttggaggtgttgcggagcacgcagtcgcggaccgtcacg 18428262
Query: 680 tcgctcacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccg 739
|| |||||||||||||||||||| | | ||| ||||| || |||||||| |||||||||
Sbjct: 18428263 tccgtcacgtccttctcgtccttgaacctgcccaggcaccccacgctgatcccctgcccg 18428322
Query: 740 gggccgcaggtgat 753
|| || ||||||||
Sbjct: 18428323 ggcccacaggtgat 18428336
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 519 ggcagaagtactggtcgatgacgatggggttggccacctcctccatcctgatgttctcga 578
||||| ||||||||||||||| |||||||||| |||| | |||||||| | ||||||||
Sbjct: 10827313 ggcagtagtactggtcgatgatgatggggttgcgcaccgcgtccatcctcacgttctcga 10827254
Query: 579 a 579
|
Sbjct: 10827253 a 10827253
Score = 48.1 bits (24), Expect = 0.014
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatgg 818
|||||||||||||||||||||| |||||
Sbjct: 38823724 gagacgcagtcgtcgccggtgcggatgg 38823697
>ref|XM_463287.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1212
Score = 113 bits (57), Expect = 3e-022
Identities = 150/181 (82%)
Strand = Plus / Minus
Query: 290 cccttggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcg 349
||||||| | |||||||||||||| |||||||||||||||| ||||||| ||||||| ||
Sbjct: 1184 cccttggagatgcccttggcgttggtgcagacggccatggtcttgttgtccttgccgtcg 1125
Query: 350 tactccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagc 409
|||| || |||||| |||| || | ||||||||| ||| || || ||||||||
Sbjct: 1124 tacttcaggttgacgtcgagcagctccatgccgctgcagggcagctggtcagagcagagt 1065
Query: 410 aggctgatggcctcgggcgtggacgacgtgccggtgatgttgcggaacgtgacgtccttg 469
||||||| |||||| |||||| || ||||||||||||||||||||||| |||| ||||
Sbjct: 1064 aggctgacggcctccggcgtgttggaggtgccggtgatgttgcggaacgtcacgttcttg 1005
Query: 470 a 470
|
Sbjct: 1004 a 1004
Score = 91.7 bits (46), Expect = 1e-015
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 620 tacgacttgatgcgcacgccgttggtggtgttcttgagcacgcagttccgcaccgtgatg 679
||||||||||| || |||||||||| |||||| ||||||||||| || ||||| | |
Sbjct: 857 tacgacttgatccggacgccgttggaggtgttgcggagcacgcagtcgcggaccgtcacg 798
Query: 680 tcgctcacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccg 739
|| |||||||||||||||||||| | | ||| ||||| || |||||||| |||||||||
Sbjct: 797 tccgtcacgtccttctcgtccttgaacctgcccaggcaccccacgctgatcccctgcccg 738
Query: 740 gggccgcaggtgat 753
|| || ||||||||
Sbjct: 737 ggcccacaggtgat 724
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 113 bits (57), Expect = 3e-022
Identities = 150/181 (82%)
Strand = Plus / Plus
Query: 290 cccttggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcg 349
||||||| | |||||||||||||| |||||||||||||||| ||||||| ||||||| ||
Sbjct: 1346108 cccttggagatgcccttggcgttggtgcagacggccatggtcttgttgtccttgccgtcg 1346167
Query: 350 tactccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagc 409
|||| || |||||| |||| || | ||||||||| ||| || || ||||||||
Sbjct: 1346168 tacttcaggttgacgtcgagcagctccatgccgctgcagggcagctggtcagagcagagt 1346227
Query: 410 aggctgatggcctcgggcgtggacgacgtgccggtgatgttgcggaacgtgacgtccttg 469
||||||| |||||| |||||| || ||||||||||||||||||||||| |||| ||||
Sbjct: 1346228 aggctgacggcctccggcgtgttggaggtgccggtgatgttgcggaacgtcacgttcttg 1346287
Query: 470 a 470
|
Sbjct: 1346288 a 1346288
Score = 91.7 bits (46), Expect = 1e-015
Identities = 112/134 (83%)
Strand = Plus / Plus
Query: 620 tacgacttgatgcgcacgccgttggtggtgttcttgagcacgcagttccgcaccgtgatg 679
||||||||||| || |||||||||| |||||| ||||||||||| || ||||| | |
Sbjct: 1346435 tacgacttgatccggacgccgttggaggtgttgcggagcacgcagtcgcggaccgtcacg 1346494
Query: 680 tcgctcacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccg 739
|| |||||||||||||||||||| | | ||| ||||| || |||||||| |||||||||
Sbjct: 1346495 tccgtcacgtccttctcgtccttgaacctgcccaggcaccccacgctgatcccctgcccg 1346554
Query: 740 gggccgcaggtgat 753
|| || ||||||||
Sbjct: 1346555 ggcccacaggtgat 1346568
>dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1108H10
Length = 136357
Score = 113 bits (57), Expect = 3e-022
Identities = 150/181 (82%)
Strand = Plus / Plus
Query: 290 cccttggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcg 349
||||||| | |||||||||||||| |||||||||||||||| ||||||| ||||||| ||
Sbjct: 106493 cccttggagatgcccttggcgttggtgcagacggccatggtcttgttgtccttgccgtcg 106552
Query: 350 tactccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagc 409
|||| || |||||| |||| || | ||||||||| ||| || || ||||||||
Sbjct: 106553 tacttcaggttgacgtcgagcagctccatgccgctgcagggcagctggtcagagcagagt 106612
Query: 410 aggctgatggcctcgggcgtggacgacgtgccggtgatgttgcggaacgtgacgtccttg 469
||||||| |||||| |||||| || ||||||||||||||||||||||| |||| ||||
Sbjct: 106613 aggctgacggcctccggcgtgttggaggtgccggtgatgttgcggaacgtcacgttcttg 106672
Query: 470 a 470
|
Sbjct: 106673 a 106673
Score = 91.7 bits (46), Expect = 1e-015
Identities = 112/134 (83%)
Strand = Plus / Plus
Query: 620 tacgacttgatgcgcacgccgttggtggtgttcttgagcacgcagttccgcaccgtgatg 679
||||||||||| || |||||||||| |||||| ||||||||||| || ||||| | |
Sbjct: 106820 tacgacttgatccggacgccgttggaggtgttgcggagcacgcagtcgcggaccgtcacg 106879
Query: 680 tcgctcacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccg 739
|| |||||||||||||||||||| | | ||| ||||| || |||||||| |||||||||
Sbjct: 106880 tccgtcacgtccttctcgtccttgaacctgcccaggcaccccacgctgatcccctgcccg 106939
Query: 740 gggccgcaggtgat 753
|| || ||||||||
Sbjct: 106940 ggcccacaggtgat 106953
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 113 bits (57), Expect = 3e-022
Identities = 150/181 (82%)
Strand = Plus / Plus
Query: 290 cccttggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcg 349
||||||| | |||||||||||||| |||||||||||||||| ||||||| ||||||| ||
Sbjct: 1383096 cccttggagatgcccttggcgttggtgcagacggccatggtcttgttgtccttgccgtcg 1383155
Query: 350 tactccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagc 409
|||| || |||||| |||| || | ||||||||| ||| || || ||||||||
Sbjct: 1383156 tacttcaggttgacgtcgagcagctccatgccgctgcagggcagctggtcagagcagagt 1383215
Query: 410 aggctgatggcctcgggcgtggacgacgtgccggtgatgttgcggaacgtgacgtccttg 469
||||||| |||||| |||||| || ||||||||||||||||||||||| |||| ||||
Sbjct: 1383216 aggctgacggcctccggcgtgttggaggtgccggtgatgttgcggaacgtcacgttcttg 1383275
Query: 470 a 470
|
Sbjct: 1383276 a 1383276
Score = 91.7 bits (46), Expect = 1e-015
Identities = 112/134 (83%)
Strand = Plus / Plus
Query: 620 tacgacttgatgcgcacgccgttggtggtgttcttgagcacgcagttccgcaccgtgatg 679
||||||||||| || |||||||||| |||||| ||||||||||| || ||||| | |
Sbjct: 1383423 tacgacttgatccggacgccgttggaggtgttgcggagcacgcagtcgcggaccgtcacg 1383482
Query: 680 tcgctcacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccg 739
|| |||||||||||||||||||| | | ||| ||||| || |||||||| |||||||||
Sbjct: 1383483 tccgtcacgtccttctcgtccttgaacctgcccaggcaccccacgctgatcccctgcccg 1383542
Query: 740 gggccgcaggtgat 753
|| || ||||||||
Sbjct: 1383543 ggcccacaggtgat 1383556
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 113 bits (57), Expect = 3e-022
Identities = 150/181 (82%)
Strand = Plus / Plus
Query: 290 cccttggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcg 349
||||||| | |||||||||||||| |||||||||||||||| ||||||| ||||||| ||
Sbjct: 18008219 cccttggagatgcccttggcgttggtgcagacggccatggtcttgttgtccttgccgtcg 18008278
Query: 350 tactccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagc 409
|||| || |||||| |||| || | ||||||||| ||| || || ||||||||
Sbjct: 18008279 tacttcaggttgacgtcgagcagctccatgccgctgcagggcagctggtcagagcagagt 18008338
Query: 410 aggctgatggcctcgggcgtggacgacgtgccggtgatgttgcggaacgtgacgtccttg 469
||||||| |||||| |||||| || ||||||||||||||||||||||| |||| ||||
Sbjct: 18008339 aggctgacggcctccggcgtgttggaggtgccggtgatgttgcggaacgtcacgttcttg 18008398
Query: 470 a 470
|
Sbjct: 18008399 a 18008399
Score = 91.7 bits (46), Expect = 1e-015
Identities = 112/134 (83%)
Strand = Plus / Plus
Query: 620 tacgacttgatgcgcacgccgttggtggtgttcttgagcacgcagttccgcaccgtgatg 679
||||||||||| || |||||||||| |||||| ||||||||||| || ||||| | |
Sbjct: 18008546 tacgacttgatccggacgccgttggaggtgttgcggagcacgcagtcgcggaccgtcacg 18008605
Query: 680 tcgctcacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccg 739
|| |||||||||||||||||||| | | ||| ||||| || |||||||| |||||||||
Sbjct: 18008606 tccgtcacgtccttctcgtccttgaacctgcccaggcaccccacgctgatcccctgcccg 18008665
Query: 740 gggccgcaggtgat 753
|| || ||||||||
Sbjct: 18008666 ggcccacaggtgat 18008679
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 519 ggcagaagtactggtcgatgacgatggggttggccacctcctccatcctgatgttctcga 578
||||| ||||||||||||||| |||||||||| |||| | |||||||| | ||||||||
Sbjct: 11043518 ggcagtagtactggtcgatgatgatggggttgcgcaccgcgtccatcctcacgttctcga 11043459
Query: 579 a 579
|
Sbjct: 11043458 a 11043458
Score = 48.1 bits (24), Expect = 0.014
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatgg 818
|||||||||||||||||||||| |||||
Sbjct: 38203675 gagacgcagtcgtcgccggtgcggatgg 38203648
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 113 bits (57), Expect = 3e-022
Identities = 150/181 (82%)
Strand = Plus / Plus
Query: 290 cccttggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcg 349
||||||| | |||||||||||||| |||||||||||||||| ||||||| ||||||| ||
Sbjct: 18349159 cccttggagatgcccttggcgttggtgcagacggccatggtcttgttgtccttgccgtcg 18349218
Query: 350 tactccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagc 409
|||| || |||||| |||| || | ||||||||| ||| || || ||||||||
Sbjct: 18349219 tacttcaggttgacgtcgagcagctccatgccgctgcagggcagctggtcagagcagagt 18349278
Query: 410 aggctgatggcctcgggcgtggacgacgtgccggtgatgttgcggaacgtgacgtccttg 469
||||||| |||||| |||||| || ||||||||||||||||||||||| |||| ||||
Sbjct: 18349279 aggctgacggcctccggcgtgttggaggtgccggtgatgttgcggaacgtcacgttcttg 18349338
Query: 470 a 470
|
Sbjct: 18349339 a 18349339
Score = 91.7 bits (46), Expect = 1e-015
Identities = 112/134 (83%)
Strand = Plus / Plus
Query: 620 tacgacttgatgcgcacgccgttggtggtgttcttgagcacgcagttccgcaccgtgatg 679
||||||||||| || |||||||||| |||||| ||||||||||| || ||||| | |
Sbjct: 18349486 tacgacttgatccggacgccgttggaggtgttgcggagcacgcagtcgcggaccgtcacg 18349545
Query: 680 tcgctcacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccg 739
|| |||||||||||||||||||| | | ||| ||||| || |||||||| |||||||||
Sbjct: 18349546 tccgtcacgtccttctcgtccttgaacctgcccaggcaccccacgctgatcccctgcccg 18349605
Query: 740 gggccgcaggtgat 753
|| || ||||||||
Sbjct: 18349606 ggcccacaggtgat 18349619
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 519 ggcagaagtactggtcgatgacgatggggttggccacctcctccatcctgatgttctcga 578
||||| ||||||||||||||| |||||||||| |||| | |||||||| | ||||||||
Sbjct: 10829531 ggcagtagtactggtcgatgatgatggggttgcgcaccgcgtccatcctcacgttctcga 10829472
Query: 579 a 579
|
Sbjct: 10829471 a 10829471
Score = 48.1 bits (24), Expect = 0.014
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatgg 818
|||||||||||||||||||||| |||||
Sbjct: 38743054 gagacgcagtcgtcgccggtgcggatgg 38743027
>dbj|AK072748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140O11, full
insert sequence
Length = 1559
Score = 105 bits (53), Expect = 7e-020
Identities = 179/221 (80%)
Strand = Plus / Minus
Query: 532 gtcgatgacgatggggttggccacctcctccatcctgatgttctcgaaggtgagatggga 591
|||||||| ||||||||| || || ||||||||| ||||||||||| |||| | | |||
Sbjct: 1026 gtcgatgatgatggggttagcaacgtcctccatcttgatgttctcgtaggtaaacttgga 967
Query: 592 ggccgtcagcacggactcggcgtccacgtacgacttgatgcgcacgccgttggtggtgtt 651
||| || ||||| || |||||||| | || |||||||| || ||||| ||||||| ||
Sbjct: 966 ggcggtgagcaccgaggcggcgtcctcataggacttgatccggacgccattggtggactt 907
Query: 652 cttgagcacgcagttccgcaccgtgatgtcgctcacgtccttctcgtccttgtagcggcc 711
|||||||||||||||| || || | || |||| ||||||||||||||||| | |||
Sbjct: 906 cttgagcacgcagttcttgacggtaacatccgtcacatccttctcgtccttgtacctgcc 847
Query: 712 taggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||| |||||||||||||| || || || ||||||||||
Sbjct: 846 caggctaccgacgctgatgccgtggccaggaccgcaggtga 806
Score = 81.8 bits (41), Expect = 1e-012
Identities = 128/157 (81%)
Strand = Plus / Minus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||||||||| || |||||||||||||||| |||||||| |||| | |||||
Sbjct: 1258 tggcagtgcccttggcattcttgcagacggccatggtcttgttgtttgtgccagagtact 1199
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | || ||||||| |||| ||| || | || |||||||| ||||
Sbjct: 1198 cgaccttgatgtcattcaaggtgacgccggtgcacggcagcttgtcggagcagaggaggc 1139
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgatgtt 450
| | ||||||||||||||| || ||||||||||||||
Sbjct: 1138 taacggcctcgggcgtggaggaggtgccggtgatgtt 1102
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 803 tcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcctccgacgtggacg 862
||||||||||||||| || || | ||||||||||||||||||| | || | ||||| |
Sbjct: 755 tcgccggtgccgatgaccgtgtcaatgatgctgatcttggaggagtcgcccatgtggatg 696
Query: 863 ccgtccgtgttc 874
||||||||||||
Sbjct: 695 ccgtccgtgttc 684
Score = 50.1 bits (25), Expect = 0.004
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Minus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 383 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 327
Query: 1226 agagggccgaccaggtagtcgcccttgggga 1256
|| || || || | |||||||||||||||
Sbjct: 326 aggggacccgtcaagaagtcgcccttgggga 296
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 268 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 212
>gb|AU094117.1|AU094117 AU094117 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2591, mRNA sequence
Length = 478
Score = 81.8 bits (41), Expect = 1e-012
Identities = 128/157 (81%)
Strand = Plus / Minus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgttcttgccggcgtact 353
|||| ||||||||||| || |||||||||||||||| |||||||| |||| | |||||
Sbjct: 184 tggcagtgcccttggcattcttgcagacggccatggtcttgttgtttgtgccagagtact 125
Query: 354 ccacgttgacatcgatgagggagacgccgctgcatggctgcgtctccgagcagagcaggc 413
| || |||| || | | || ||||||| |||| ||| || | || |||||||| ||||
Sbjct: 124 cgaccttgatgtcattcaaggtgacgccggtgcacggcagcttgtcggagcagaggaggc 65
Query: 414 tgatggcctcgggcgtggacgacgtgccggtgatgtt 450
| | ||||||||||||||| || ||||||||||||||
Sbjct: 64 taacggcctcgggcgtggaggaggtgccggtgatgtt 28
>dbj|AK072708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142F24, full
insert sequence
Length = 1503
Score = 69.9 bits (35), Expect = 4e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 694 ctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||||||||||| ||||| |||| ||||| ||||||||| || ||||||||||||||||
Sbjct: 902 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtga 844
Score = 54.0 bits (27), Expect = 2e-004
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcct 850
|||| |||||||||||||||||||||||| | | | |||| |||||||||||||| |
Sbjct: 805 gagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatcttggaggagtcg 746
Query: 851 ccgacgtggacgccgtccgtgtt 873
|| | ||||| |||||| |||||
Sbjct: 745 cccatgtggatgccgtcggtgtt 723
Score = 50.1 bits (25), Expect = 0.004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1346 gcgccgagcttggagatgtcgaacgtcccgccg 1378
||||||||||||| |||||||||||| ||||||
Sbjct: 232 gcgccgagcttggtgatgtcgaacgtgccgccg 200
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1151 aggtcgtttgatcccagcaggttgccatccagctggatgg 1190
|||||||| || |||||||||||||| || ||||||||||
Sbjct: 424 aggtcgttggagcccagcaggttgccgtcgagctggatgg 385
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 69.9 bits (35), Expect = 4e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 694 ctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||||||||||| ||||| |||| ||||| ||||||||| || ||||||||||||||||
Sbjct: 1467296 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtga 1467238
Score = 54.0 bits (27), Expect = 2e-004
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcct 850
|||| |||||||||||||||||||||||| | | | |||| |||||||||||||| |
Sbjct: 1467199 gagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatcttggaggagtcg 1467140
Query: 851 ccgacgtggacgccgtccgtgtt 873
|| | ||||| |||||| |||||
Sbjct: 1467139 cccatgtggatgccgtcggtgtt 1467117
Score = 50.1 bits (25), Expect = 0.004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1346 gcgccgagcttggagatgtcgaacgtcccgccg 1378
||||||||||||| |||||||||||| ||||||
Sbjct: 1466088 gcgccgagcttggtgatgtcgaacgtgccgccg 1466056
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1151 aggtcgtttgatcccagcaggttgccatccagctggatgg 1190
|||||||| || |||||||||||||| || ||||||||||
Sbjct: 1466280 aggtcgttggagcccagcaggttgccgtcgagctggatgg 1466241
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 722 acgctgatgccctgcccggggccgca 747
||||||||||| ||||||||||||||
Sbjct: 1463008 acgctgatgccgtgcccggggccgca 1462983
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0429G06
Length = 158321
Score = 69.9 bits (35), Expect = 4e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 694 ctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||||||||||| ||||| |||| ||||| ||||||||| || ||||||||||||||||
Sbjct: 11504 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtga 11446
Score = 54.0 bits (27), Expect = 2e-004
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcct 850
|||| |||||||||||||||||||||||| | | | |||| |||||||||||||| |
Sbjct: 11407 gagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatcttggaggagtcg 11348
Query: 851 ccgacgtggacgccgtccgtgtt 873
|| | ||||| |||||| |||||
Sbjct: 11347 cccatgtggatgccgtcggtgtt 11325
Score = 50.1 bits (25), Expect = 0.004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1346 gcgccgagcttggagatgtcgaacgtcccgccg 1378
||||||||||||| |||||||||||| ||||||
Sbjct: 10296 gcgccgagcttggtgatgtcgaacgtgccgccg 10264
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1151 aggtcgtttgatcccagcaggttgccatccagctggatgg 1190
|||||||| || |||||||||||||| || ||||||||||
Sbjct: 10488 aggtcgttggagcccagcaggttgccgtcgagctggatgg 10449
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 722 acgctgatgccctgcccggggccgca 747
||||||||||| ||||||||||||||
Sbjct: 7216 acgctgatgccgtgcccggggccgca 7191
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0490F09
Length = 149542
Score = 69.9 bits (35), Expect = 4e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 694 ctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||||||||||| ||||| |||| ||||| ||||||||| || ||||||||||||||||
Sbjct: 131422 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtga 131364
Score = 54.0 bits (27), Expect = 2e-004
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcct 850
|||| |||||||||||||||||||||||| | | | |||| |||||||||||||| |
Sbjct: 131325 gagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatcttggaggagtcg 131266
Query: 851 ccgacgtggacgccgtccgtgtt 873
|| | ||||| |||||| |||||
Sbjct: 131265 cccatgtggatgccgtcggtgtt 131243
Score = 50.1 bits (25), Expect = 0.004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1346 gcgccgagcttggagatgtcgaacgtcccgccg 1378
||||||||||||| |||||||||||| ||||||
Sbjct: 130214 gcgccgagcttggtgatgtcgaacgtgccgccg 130182
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1151 aggtcgtttgatcccagcaggttgccatccagctggatgg 1190
|||||||| || |||||||||||||| || ||||||||||
Sbjct: 130406 aggtcgttggagcccagcaggttgccgtcgagctggatgg 130367
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 722 acgctgatgccctgcccggggccgca 747
||||||||||| ||||||||||||||
Sbjct: 127134 acgctgatgccgtgcccggggccgca 127109
>gb|AACV01014531.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014531, whole
genome shotgun sequence
Length = 41492
Score = 69.9 bits (35), Expect = 4e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 694 ctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccggggccgcaggtga 752
|||||||||||| ||||| |||| ||||| ||||||||| || ||||||||||||||||
Sbjct: 32177 ctcgtccttgtaccggccgaggctgccgatgctgatgccgtggccggggccgcaggtga 32119
Score = 54.0 bits (27), Expect = 2e-004
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcct 850
|||| |||||||||||||||||||||||| | | | |||| |||||||||||||| |
Sbjct: 32080 gagatgcagtcgtcgccggtgccgatggtggtggcggcgatggtgatcttggaggagtcg 32021
Query: 851 ccgacgtggacgccgtccgtgtt 873
|| | ||||| |||||| |||||
Sbjct: 32020 cccatgtggatgccgtcggtgtt 31998
Score = 50.1 bits (25), Expect = 0.004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1346 gcgccgagcttggagatgtcgaacgtcccgccg 1378
||||||||||||| |||||||||||| ||||||
Sbjct: 30969 gcgccgagcttggtgatgtcgaacgtgccgccg 30937
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1151 aggtcgtttgatcccagcaggttgccatccagctggatgg 1190
|||||||| || |||||||||||||| || ||||||||||
Sbjct: 31161 aggtcgttggagcccagcaggttgccgtcgagctggatgg 31122
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 722 acgctgatgccctgcccggggccgca 747
||||||||||| ||||||||||||||
Sbjct: 27889 acgctgatgccgtgcccggggccgca 27864
>ref|XM_464471.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1269
Score = 63.9 bits (32), Expect = 2e-007
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 685 cacgtccttctcgtccttgtagcggcctaggcagccgacgctgatgccctgcccggggcc 744
||||||||||||||||||||| ||||| |||| ||||||| |||||| || ||||||||
Sbjct: 852 cacgtccttctcgtccttgtaccggccgaggctgccgacggagatgccgtgaccggggcc 793
Score = 46.1 bits (23), Expect = 0.056
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatggtcgagttgaggatgctgatcttggaggagcct 850
|||| |||||||||||||| | ||||||| | | | |||| |||| |||| |||| |
Sbjct: 746 gagatgcagtcgtcgccggcggcgatggtggtggagctgatggtgatgttggtggagtcg 687
Query: 851 ccgacgtggacgccgtccgtgtt 873
|||||||||| ||||||||||||
Sbjct: 686 ccgacgtggatgccgtccgtgtt 664
>ref|NT_079878.2| Oryza sativa (japonica cultivar-group)
Length = 2996370
Score = 61.9 bits (31), Expect = 9e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 777 acccgggcccaatcgagacgcagtcgtcgccggtgccga 815
|||||||||| || |||||||||||||||||||||||||
Sbjct: 2702066 acccgggcccgatggagacgcagtcgtcgccggtgccga 2702028
>dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0071G09
Length = 169148
Score = 61.9 bits (31), Expect = 9e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 777 acccgggcccaatcgagacgcagtcgtcgccggtgccga 815
|||||||||| || |||||||||||||||||||||||||
Sbjct: 35850 acccgggcccgatggagacgcagtcgtcgccggtgccga 35812
>gb|AACV01014109.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014109, whole
genome shotgun sequence
Length = 47054
Score = 61.9 bits (31), Expect = 9e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 777 acccgggcccaatcgagacgcagtcgtcgccggtgccga 815
|||||||||| || |||||||||||||||||||||||||
Sbjct: 17133 acccgggcccgatggagacgcagtcgtcgccggtgccga 17171
>gb|CH401214.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000051
genomic scaffold, whole genome shotgun sequence
Length = 1060799
Score = 61.9 bits (31), Expect = 9e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 777 acccgggcccaatcgagacgcagtcgtcgccggtgccga 815
|||||||||| || |||||||||||||||||||||||||
Sbjct: 998187 acccgggcccgatggagacgcagtcgtcgccggtgccga 998149
>gb|AACV01000807.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000807, whole
genome shotgun sequence
Length = 15948
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 519 ggcagaagtactggtcgatgacgatggggttggccacctcctccatcctgatgttctcga 578
||||| ||||||||||||||| |||||||||| |||| | |||||||| | ||||||||
Sbjct: 13701 ggcagtagtactggtcgatgatgatggggttgcgcaccgcgtccatcctcacgttctcga 13760
Query: 579 a 579
|
Sbjct: 13761 a 13761
>ref|NM_183645.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1512
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 519 ggcagaagtactggtcgatgacgatggggttggccacctcctccatcctgatgttctcga 578
||||| ||||||||||||||| |||||||||| |||| | |||||||| | ||||||||
Sbjct: 1210 ggcagtagtactggtcgatgatgatggggttgcgcaccgcgtccatcctcacgttctcga 1151
Query: 579 a 579
|
Sbjct: 1150 a 1150
>ref|NT_036323.3| Oryza sativa (japonica cultivar-group)
Length = 1440362
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 519 ggcagaagtactggtcgatgacgatggggttggccacctcctccatcctgatgttctcga 578
||||| ||||||||||||||| |||||||||| |||| | |||||||| | ||||||||
Sbjct: 777000 ggcagtagtactggtcgatgatgatggggttgcgcaccgcgtccatcctcacgttctcga 776941
Query: 579 a 579
|
Sbjct: 776940 a 776940
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0025P13
Length = 133242
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 519 ggcagaagtactggtcgatgacgatggggttggccacctcctccatcctgatgttctcga 578
||||| ||||||||||||||| |||||||||| |||| | |||||||| | ||||||||
Sbjct: 16547 ggcagtagtactggtcgatgatgatggggttgcgcaccgcgtccatcctcacgttctcga 16488
Query: 579 a 579
|
Sbjct: 16487 a 16487
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 519 ggcagaagtactggtcgatgacgatggggttggccacctcctccatcctgatgttctcga 578
||||| ||||||||||||||| |||||||||| |||| | |||||||| | ||||||||
Sbjct: 11043518 ggcagtagtactggtcgatgatgatggggttgcgcaccgcgtccatcctcacgttctcga 11043459
Query: 579 a 579
|
Sbjct: 11043458 a 11043458
>gb|CB652533.1|CB652533 OSJNEc02J24.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02J24 3', mRNA sequence
Length = 801
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatg 817
|||||||||||||||||||||||||||
Sbjct: 774 gagacgcagtcgtcgccggtgccgatg 800
>gb|AC120530.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0049D05,
*** SEQUENCING IN PROGRESS ***, 17 ordered pieces
Length = 144207
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatg 817
|||||||||||||||||||||||||||
Sbjct: 100851 gagacgcagtcgtcgccggtgccgatg 100825
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatg 817
|||||||||||||||||||||||||||
Sbjct: 99939 gagacgcagtcgtcgccggtgccgatg 99913
Score = 44.1 bits (22), Expect = 0.22
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgc 812
||||||||||||||||||||||
Sbjct: 94292 gagacgcagtcgtcgccggtgc 94271
>gb|AACV01022705.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022705, whole
genome shotgun sequence
Length = 18936
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatg 817
|||||||||||||||||||||||||||
Sbjct: 16647 gagacgcagtcgtcgccggtgccgatg 16673
>gb|CH401261.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000098
genomic scaffold, whole genome shotgun sequence
Length = 1076157
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatg 817
|||||||||||||||||||||||||||
Sbjct: 322103 gagacgcagtcgtcgccggtgccgatg 322077
Score = 44.1 bits (22), Expect = 0.22
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgc 812
||||||||||||||||||||||
Sbjct: 315968 gagacgcagtcgtcgccggtgc 315947
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatg 817
|||||||||||||||||||||||||||
Sbjct: 7524370 gagacgcagtcgtcgccggtgccgatg 7524396
Score = 44.1 bits (22), Expect = 0.22
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgc 812
||||||||||||||||||||||
Sbjct: 7530505 gagacgcagtcgtcgccggtgc 7530526
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatg 817
|||||||||||||||||||||||||||
Sbjct: 8005105 gagacgcagtcgtcgccggtgccgatg 8005131
Score = 44.1 bits (22), Expect = 0.22
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgc 812
||||||||||||||||||||||
Sbjct: 8010751 gagacgcagtcgtcgccggtgc 8010772
>gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0782F03 map
near S2137, complete sequence
Length = 197516
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatg 817
|||||||||||||||||||||||||||
Sbjct: 85950 gagacgcagtcgtcgccggtgccgatg 85976
Score = 44.1 bits (22), Expect = 0.22
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgc 812
||||||||||||||||||||||
Sbjct: 91596 gagacgcagtcgtcgccggtgc 91617
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatg 817
|||||||||||||||||||||||||||
Sbjct: 8075161 gagacgcagtcgtcgccggtgccgatg 8075187
Score = 44.1 bits (22), Expect = 0.22
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgc 812
||||||||||||||||||||||
Sbjct: 8080807 gagacgcagtcgtcgccggtgc 8080828
>gb|AU312180.1|AU312180 AU312180 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1658, mRNA sequence
Length = 356
Score = 52.0 bits (26), Expect = 0.001
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 294 tggcggtgcccttggcgttgctgcagacggccatggttttgttgtt 339
|||| ||||||||||| || |||||||||||||||| ||||||||
Sbjct: 129 tggcagtgcccttggcattcttgcagacggccatggtcttgttgtt 84
>gb|C72992.1|C72992 C72992 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2619_1A, mRNA sequence
Length = 463
Score = 50.1 bits (25), Expect = 0.004
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Minus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 361 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 305
Query: 1226 agagggccgaccaggtagtcgcccttgggga 1256
|| || || || | |||||||||||||||
Sbjct: 304 aggggacccgtcaagaagtcgcccttgggga 274
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 246 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 190
>gb|C72981.2|C72981 C72981 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2591_2A, mRNA sequence
Length = 470
Score = 50.1 bits (25), Expect = 0.004
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Minus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 364 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 308
Query: 1226 agagggccgaccaggtagtcgcccttgggga 1256
|| || || || | |||||||||||||||
Sbjct: 307 aggggacccgtcaagaagtcgcccttgggga 277
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 249 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 193
>gb|AACV01014263.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014263, whole
genome shotgun sequence
Length = 4633
Score = 50.1 bits (25), Expect = 0.004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1284 cgcacgctgacgtccacgcgtcctggactgcctttgtgcagtccgtcttgccgtcgc 1340
||||||| | ||||||||| || | ||| ||||| |||| |||||||||||||||||
Sbjct: 384 cgcacgccgccgtccacgcctcgttgaccgccttggtgctgtccgtcttgccgtcgc 440
Score = 50.1 bits (25), Expect = 0.004
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1166 agcaggttgccatccagctggatggcgatgttgctgcccttgcatggcccagtgaagttg 1225
|||||||| || || ||||||||| |||||| || ||||||||||||| |||||||||
Sbjct: 269 agcaggtttccgtcgagctggatgacgatgtcgc---ccttgcatggcccggtgaagttg 325
Query: 1226 agagggccgaccaggtagtcgcccttgggga 1256
|| || || || | |||||||||||||||
Sbjct: 326 aggggacccgtcaagaagtcgcccttgggga 356
>gb|AACV01002829.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002829, whole
genome shotgun sequence
Length = 76829
Score = 48.1 bits (24), Expect = 0.014
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 791 gagacgcagtcgtcgccggtgccgatgg 818
|||||||||||||||||||||| |||||
Sbjct: 18849 gagacgcagtcgtcgccggtgcggatgg 18876
>ref|NM_190223.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1227
Score = 48.1 bits (24), Expect = 0.014
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatgg 818
|||||||||||||||||||||| |||||
Sbjct: 677 gagacgcagtcgtcgccggtgcggatgg 650
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 48.1 bits (24), Expect = 0.014
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatgg 818
|||||||||||||||||||||| |||||
Sbjct: 13271107 gagacgcagtcgtcgccggtgcggatgg 13271080
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1078G07
Length = 199457
Score = 48.1 bits (24), Expect = 0.014
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 791 gagacgcagtcgtcgccggtgccgatgg 818
|||||||||||||||||||||| |||||
Sbjct: 15936 gagacgcagtcgtcgccggtgcggatgg 15909
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,162,383
Number of Sequences: 438736
Number of extensions: 2162383
Number of successful extensions: 16506
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 15357
Number of HSP's gapped (non-prelim): 1116
length of query: 1531
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1510
effective length of database: 2,791,206,460
effective search space: 4214721754600
effective search space used: 4214721754600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)