BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696569.2.1
(1022 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA... 769 0.0
dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA... 769 0.0
ref|XM_475418.1| Oryza sativa (japonica cultivar-group), p... 769 0.0
ref|NM_190380.1| Oryza sativa (japonica cultivar-group), p... 710 0.0
dbj|AK070463.1| Oryza sativa (japonica cultivar-group) cDNA... 702 0.0
gb|U30477.1|OSU30477 Oryza sativa (japonica cultivar-group)... 690 0.0
gb|AC144737.2| Oryza sativa (japonica cultivar-group) chrom... 430 e-118
gb|AACV01012416.1| Oryza sativa (japonica cultivar-group) c... 430 e-118
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 430 e-118
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 430 e-118
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 430 e-118
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 430 e-118
gb|CV730571.1|CV730571 FLO--04-C21.b1 Rice flower lambda ph... 389 e-105
gb|AACV01002595.1| Oryza sativa (japonica cultivar-group) c... 381 e-103
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 381 e-103
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 381 e-103
dbj|AP003348.3| Oryza sativa (japonica cultivar-group) geno... 381 e-103
dbj|AP003230.4| Oryza sativa (japonica cultivar-group) geno... 381 e-103
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 381 e-103
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 381 e-103
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 381 e-103
gb|C25149.1|C25149 C25149 Rice shoot Oryza sativa (japonica... 317 7e-084
gb|C72427.1|C72427 C72427 Rice panicle at flowering stage O... 276 2e-071
gb|BE039217.1|BE039217 OA01E03 OA Oryza sativa (japonica cu... 272 3e-070
ref|XM_493787.1| Oryza sativa (japonica cultivar-group), Oz... 214 7e-053
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 214 7e-053
dbj|AP000837.1| Oryza sativa (japonica cultivar-group) geno... 214 7e-053
gb|DQ062981.1| Oryza sativa (japonica cultivar-group) alpha... 214 7e-053
gb|AU081601.1|AU081601 AU081601 Rice shoot Oryza sativa (ja... 212 3e-052
gb|AACV01000668.1| Oryza sativa (japonica cultivar-group) c... 200 1e-048
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 200 1e-048
gb|D40432.1|D40432 RICS2408A Rice shoot Oryza sativa (japon... 198 4e-048
gb|D41419.1|D41419 RICS3911A Rice shoot Oryza sativa (japon... 198 4e-048
gb|AU078738.1|AU078738 AU078738 Rice shoot Oryza sativa (ja... 194 7e-047
dbj|AK107698.1| Oryza sativa (japonica cultivar-group) cDNA... 194 7e-047
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 194 7e-047
gb|AC125496.3| Oryza sativa (japonica cultivar-group) chrom... 194 7e-047
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 194 7e-047
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 194 7e-047
gb|D41260.1|D41260 RICS3629A Rice shoot Oryza sativa (japon... 184 6e-044
gb|D24200.1|D24200 RICR1518A Rice root Oryza sativa (japoni... 172 2e-040
gb|AACV01006557.1| Oryza sativa (japonica cultivar-group) c... 170 9e-040
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 170 9e-040
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 170 9e-040
gb|D39423.1|D39423 RICS0736A Rice shoot Oryza sativa (japon... 163 2e-037
gb|D41913.1|D41913 RICS4917A Rice shoot Oryza sativa (japon... 163 2e-037
gb|D49095.1|D49095 RICS15755A Rice green shoot Oryza sativa... 161 9e-037
dbj|AK070133.1| Oryza sativa (japonica cultivar-group) cDNA... 155 6e-035
gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 gen... 155 6e-035
dbj|AP003769.3| Oryza sativa (japonica cultivar-group) geno... 155 6e-035
gb|AACV01014938.1| Oryza sativa (japonica cultivar-group) c... 155 6e-035
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 155 6e-035
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 155 6e-035
gb|DQ061068.1| Oryza sativa (japonica cultivar-group) alpha... 155 6e-035
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 155 6e-035
gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (j... 153 2e-034
dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA... 153 2e-034
dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA... 153 2e-034
gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) c... 153 2e-034
ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA 153 2e-034
ref|XM_470717.1| Oryza sativa (japonica cultivar-group), mRNA 153 2e-034
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 153 2e-034
ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-... 153 2e-034
dbj|AP004114.3| Oryza sativa (japonica cultivar-group) geno... 153 2e-034
dbj|AP005297.3| Oryza sativa (japonica cultivar-group) geno... 153 2e-034
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 153 2e-034
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 153 2e-034
gb|DQ061062.1| Oryza sativa (japonica cultivar-group) alpha... 153 2e-034
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 153 2e-034
gb|AC105730.2| Oryza sativa (japonica cultivar-group) chrom... 149 3e-033
gb|AC134233.3| Oryza sativa (japonica cultivar-group) chrom... 149 3e-033
gb|AACV01005896.1| Oryza sativa (japonica cultivar-group) c... 149 3e-033
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 149 3e-033
gb|CB645780.1|CB645780 OSJNEb07L24.r OSJNEb Oryza sativa (j... 137 1e-029
dbj|AP004128.1| Oryza sativa (japonica cultivar-group) chro... 137 1e-029
gb|AACV01003830.1| Oryza sativa (japonica cultivar-group) c... 137 1e-029
dbj|AP005428.2| Oryza sativa (japonica cultivar-group) geno... 137 1e-029
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 137 1e-029
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 137 1e-029
gb|AACV01003829.1| Oryza sativa (japonica cultivar-group) c... 135 5e-029
gb|DQ061055.1| Oryza sativa (japonica cultivar-group) alpha... 135 5e-029
dbj|AK101784.1| Oryza sativa (japonica cultivar-group) cDNA... 133 2e-028
dbj|AK119215.1| Oryza sativa (japonica cultivar-group) cDNA... 133 2e-028
ref|NM_185168.1| Oryza sativa (japonica cultivar-group), mRNA 133 2e-028
gb|C73835.1|C73835 C73835 Rice panicle (longer than 10cm) O... 131 8e-028
gb|DQ061065.1| Oryza sativa (japonica cultivar-group) alpha... 131 8e-028
gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 ... 125 5e-026
gb|AACV01008182.1| Oryza sativa (japonica cultivar-group) c... 125 5e-026
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 125 5e-026
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 125 5e-026
gb|AU078708.1|AU078708 AU078708 Rice cDNA from immature lea... 123 2e-025
gb|DQ061057.1| Oryza sativa (japonica cultivar-group) alpha... 123 2e-025
gb|AU078709.1|AU078709 AU078709 Rice cDNA from immature lea... 121 8e-025
gb|AC133338.2| Oryza sativa (japonica cultivar-group) chrom... 119 3e-024
gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic seque... 119 3e-024
gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 ... 119 3e-024
gb|AACV01000580.1| Oryza sativa (japonica cultivar-group) c... 119 3e-024
gb|AACV01003833.1| Oryza sativa (japonica cultivar-group) c... 119 3e-024
gb|AACV01006741.1| Oryza sativa (japonica cultivar-group) c... 119 3e-024
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 119 3e-024
dbj|AP002865.1| Oryza sativa (japonica cultivar-group) geno... 119 3e-024
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 119 3e-024
gb|DQ061063.1| Oryza sativa (japonica cultivar-group) alpha... 119 3e-024
gb|D47507.1|D47507 RICS13050A Rice green shoot Oryza sativa... 117 1e-023
dbj|AK111100.1| Oryza sativa (japonica cultivar-group) cDNA... 115 5e-023
gb|AACV01009919.1| Oryza sativa (japonica cultivar-group) c... 115 5e-023
ref|NM_188790.1| Oryza sativa (japonica cultivar-group), p... 115 5e-023
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 115 5e-023
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 115 5e-023
gb|DQ061056.1| Oryza sativa (japonica cultivar-group) alpha... 115 5e-023
gb|AU222840.1|AU222840 AU222840 Rice shoot Oryza sativa (ja... 111 8e-022
emb|Y07782.1|OSEXPANSI Oryza sativa expansin (Os-EXP-1) mRN... 111 8e-022
dbj|AK069548.1| Oryza sativa (japonica cultivar-group) cDNA... 111 8e-022
gb|AACV01008335.1| Oryza sativa (japonica cultivar-group) c... 111 8e-022
ref|XM_474982.1| Oryza sativa (japonica cultivar-group), p... 111 8e-022
ref|NT_107205.1| Oryza sativa (japonica cultivar-group) 111 8e-022
gb|CH401180.1| Oryza sativa (japonica cultivar-group) chrom... 111 8e-022
emb|AL731598.2|OSJN00248 Oryza sativa genomic DNA, chromoso... 111 8e-022
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 111 8e-022
gb|CG408353.1|CG408353 Ds43 Ds insertion lines Oryza sativa... 109 3e-021
gb|DQ061066.1| Oryza sativa (japonica cultivar-group) alpha... 107 1e-020
gb|AC087550.3| Oryza sativa (japonica cultivar-group) chrom... 105 5e-020
ref|NM_196686.1| Oryza sativa (japonica cultivar-group) put... 105 5e-020
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 105 5e-020
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 105 5e-020
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 105 5e-020
gb|AACV01021633.1| Oryza sativa (japonica cultivar-group) c... 103 2e-019
ref|NM_196687.1| Oryza sativa (japonica cultivar-group) put... 103 2e-019
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
gb|DQ061067.1| Oryza sativa (japonica cultivar-group) alpha... 103 2e-019
gb|AU031005.1|AU031005 AU031005 Rice cDNA from immature lea... 98 1e-017
gb|AACV01003831.1| Oryza sativa (japonica cultivar-group) c... 96 5e-017
gb|DQ061064.1| Oryza sativa (japonica cultivar-group) alpha... 96 5e-017
gb|D42004.1|D42004 RICS5074A Rice shoot Oryza sativa (japon... 94 2e-016
gb|C25440.2|C25440 C25440 Rice shoot Oryza sativa (japonica... 94 2e-016
dbj|AK111273.1| Oryza sativa (japonica cultivar-group) cDNA... 90 3e-015
gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 ... 90 3e-015
ref|XM_468791.1| Oryza sativa (japonica cultivar-group), mRNA 90 3e-015
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 90 3e-015
ref|NM_188792.1| Oryza sativa (japonica cultivar-group), p... 90 3e-015
gb|DQ061054.1| Oryza sativa (japonica cultivar-group) alpha... 90 3e-015
gb|AU030502.1|AU030502 AU030502 Rice cDNA from immature lea... 88 1e-014
dbj|AB033663.1| Oryza sativa (japonica cultivar-group) DNA,... 86 4e-014
dbj|AP007206.1| Oryza sativa (japonica cultivar-group) chro... 86 4e-014
gb|AACV01006963.1| Oryza sativa (japonica cultivar-group) c... 86 4e-014
gb|AACV01019807.1| Oryza sativa (japonica cultivar-group) c... 86 4e-014
dbj|AP000616.2| Oryza sativa (japonica cultivar-group) geno... 86 4e-014
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 86 4e-014
ref|NM_185356.1| Oryza sativa (japonica cultivar-group), mRNA 86 4e-014
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 86 4e-014
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 86 4e-014
gb|DQ061058.1| Oryza sativa (japonica cultivar-group) alpha... 86 4e-014
gb|D41768.1|D41768 RICS4567A Rice shoot Oryza sativa (japon... 84 2e-013
dbj|AK063455.1| Oryza sativa (japonica cultivar-group) cDNA... 84 2e-013
gb|D41909.1|D41909 RICS4906A Rice shoot Oryza sativa (japon... 80 3e-012
gb|C91713.1|C91713 C91713 Rice panicle shorter than 3cm Ory... 80 3e-012
gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05... 80 3e-012
gb|AACV01021998.1| Oryza sativa (japonica cultivar-group) c... 80 3e-012
ref|NM_197539.1| Oryza sativa (japonica cultivar-group) put... 80 3e-012
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 80 3e-012
gb|AU029532.1|AU029532 AU029532 Rice panicle shorter than 3... 78 1e-011
gb|CV723142.1|CV723142 root--02-K01.g1 Rice root lambda pha... 78 1e-011
dbj|AK060313.1| Oryza sativa (japonica cultivar-group) cDNA... 78 1e-011
dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA... 78 1e-011
gb|AC130731.2| Oryza sativa (japonica cultivar-group) chrom... 78 1e-011
gb|AC145273.2| Oryza sativa (japonica cultivar-group) chrom... 78 1e-011
gb|AACV01011538.1| Oryza sativa (japonica cultivar-group) c... 78 1e-011
ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA 78 1e-011
ref|NT_107229.1| Oryza sativa (japonica cultivar-group) 78 1e-011
gb|CH401200.1| Oryza sativa (japonica cultivar-group) chrom... 78 1e-011
gb|CA755804.1|CA755804 BR030028000_PLATE_G10_79_083.ab1 OA ... 76 4e-011
gb|AACV01005898.1| Oryza sativa (japonica cultivar-group) c... 76 4e-011
gb|AACV01005899.1| Oryza sativa (japonica cultivar-group) c... 76 4e-011
gb|DQ061059.1| Oryza sativa (japonica cultivar-group) alpha... 76 4e-011
gb|DQ061060.1| Oryza sativa (japonica cultivar-group) alpha... 76 4e-011
gb|C91662.1|C91662 C91662 Rice panicle shorter than 3cm Ory... 74 2e-010
gb|AACV01005900.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
dbj|AP004587.3| Oryza sativa (japonica cultivar-group) geno... 72 7e-010
dbj|AP005544.3| Oryza sativa (japonica cultivar-group) geno... 72 7e-010
gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) c... 72 7e-010
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 72 7e-010
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 72 7e-010
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 72 7e-010
gb|DQ061061.1| Oryza sativa (japonica cultivar-group) alpha... 72 7e-010
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 72 7e-010
gb|U30479.1|OSU30479 Oryza sativa (japonica cultivar-group)... 70 3e-009
gb|AACV01011535.1| Oryza sativa (japonica cultivar-group) c... 70 3e-009
gb|C91750.2|C91750 C91750 Rice panicle shorter than 3cm Ory... 68 1e-008
gb|D40027.1|D40027 RICS1746A Rice shoot Oryza sativa (japon... 66 4e-008
gb|D23861.1|D23861 RICR0448A Rice root Oryza sativa (japoni... 62 6e-007
gb|AU078735.1|AU078735 AU078735 Rice shoot Oryza sativa (ja... 62 6e-007
gb|AY427571.1| Oryza sativa (japonica cultivar-group) seed ... 62 6e-007
dbj|AK058811.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
dbj|AK062225.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
dbj|AK066414.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
gb|AACV01010380.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
ref|XM_473658.1| Oryza sativa (japonica cultivar-group), p... 56 4e-005
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 56 4e-005
emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromoso... 56 4e-005
gb|BU099220.1|BU099220 S234-XG1 Rice cold stress germinatio... 54 2e-004
gb|CA998047.1|CA998047 S234X_G01 Rice cold stress germinati... 54 2e-004
dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chro... 54 2e-004
dbj|AK101940.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 54 2e-004
dbj|AP003539.3| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|AACV01014579.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AU069455.1|AU069455 AU069455 Rice callus Oryza sativa (j... 48 0.009
gb|AU069463.1|AU069463 AU069463 Rice callus Oryza sativa (j... 48 0.009
dbj|AK099674.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
gb|AACV01017053.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
ref|XM_479609.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.009
dbj|AP004316.4| Oryza sativa (japonica cultivar-group) geno... 48 0.009
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.009
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|D40257.1|D40257 RICS2106A Rice shoot Oryza sativa (japon... 44 0.15
gb|AU078737.1|AU078737 AU078737 Rice shoot Oryza sativa (ja... 44 0.15
>dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029P10, full
insert sequence
Length = 1311
Score = 769 bits (388), Expect = 0.0
Identities = 559/616 (90%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||| |||||||||||||||||| ||||| ||||||| ||| ||||||
Sbjct: 187 ggcggggcttgcggttacggcaacctgtacagccaagggtatggcacgaacaccgcggcg 246
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgc 191
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 247 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtgc 306
Query: 192 gacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctgc 251
||||||| |||| | | ||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 307 gacaacgccgggagttcgtgcctgccgggctccatcaccgtgacggccaccaacttctgc 366
Query: 252 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgcac 311
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 367 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccccgccctcac 426
Query: 312 ttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgccc 371
|||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |||
Sbjct: 427 ttcgacatggccgagccggcattcctccacatcgcccagtaccgcgccggcatcgtcccc 486
Query: 372 gtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatccggttcaccatcaacggg 431
||| | ||| | || |||||||||||||||||||| || || |||||||| | ||||||
Sbjct: 487 gtctccttccgcagggtgccgtgcgtgaagaagggtggggtcaggttcaccgtgaacggg 546
Query: 432 cactcctacttcaacctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctcc 491
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 547 cactcctacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgtccgctcc 606
Query: 492 gtctccatccggggctcccgcacggggtggcagcccatgtcccggaactggggccagaac 551
||||||||| ||| || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 607 gtctccatcaaggggtcgcgcaccgggtggcagcccatgtcgcggaactggggccagaac 666
Query: 552 tggcagagcaactcgtacctggacaggcaggcgctctcgttccaggtcaccgccagcgac 611
|||||||||||| ||| ||| ||| | ||| ||||| |||||||||||||||||||||
Sbjct: 667 tggcagagcaacgcgttcctcgacggccagagcctctccttccaggtcaccgccagcgac 726
Query: 612 ggccgcaccgtcaccagcaacggcgccgtccccgccggctggcagttcggccagaccttc 671
||||||||||||||||||||| || || || | ||||||||||||||||||||||||||
Sbjct: 727 ggccgcaccgtcaccagcaacaacgtcgcccaccccggctggcagttcggccagaccttc 786
Query: 672 gagggcggccagttct 687
||||| ||||||||||
Sbjct: 787 gagggtggccagttct 802
Score = 60.0 bits (30), Expect = 2e-006
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 885 gctatgctgaggctgctaatctagcacccgcctagacgtttccctt 930
|||||||||||||||||||| |||||||||| ||||||||| ||||
Sbjct: 961 gctatgctgaggctgctaat-tagcacccgcttagacgttttcctt 1005
>dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G10, full
insert sequence
Length = 2440
Score = 769 bits (388), Expect = 0.0
Identities = 559/616 (90%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||| |||||||||||||||||| ||||| ||||||| ||| ||||||
Sbjct: 186 ggcggggcttgcggttacggcaacctgtacagccaagggtatggcacgaacaccgcggcg 245
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgc 191
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 246 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtgc 305
Query: 192 gacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctgc 251
||||||| |||| | | ||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 306 gacaacgccgggagttcgtgcctgccgggctccatcaccgtgacggccaccaacttctgc 365
Query: 252 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgcac 311
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 366 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccccgccctcac 425
Query: 312 ttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgccc 371
|||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |||
Sbjct: 426 ttcgacatggccgagccggcattcctccacatcgcccagtaccgcgccggcatcgtcccc 485
Query: 372 gtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatccggttcaccatcaacggg 431
||| | ||| | || |||||||||||||||||||| || || |||||||| | ||||||
Sbjct: 486 gtctccttccgcagggtgccgtgcgtgaagaagggtggggtcaggttcaccgtgaacggg 545
Query: 432 cactcctacttcaacctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctcc 491
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 546 cactcctacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgtccgctcc 605
Query: 492 gtctccatccggggctcccgcacggggtggcagcccatgtcccggaactggggccagaac 551
||||||||| ||| || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 606 gtctccatcaaggggtcgcgcaccgggtggcagcccatgtcgcggaactggggccagaac 665
Query: 552 tggcagagcaactcgtacctggacaggcaggcgctctcgttccaggtcaccgccagcgac 611
|||||||||||| ||| ||| ||| | ||| ||||| |||||||||||||||||||||
Sbjct: 666 tggcagagcaacgcgttcctcgacggccagagcctctccttccaggtcaccgccagcgac 725
Query: 612 ggccgcaccgtcaccagcaacggcgccgtccccgccggctggcagttcggccagaccttc 671
||||||||||||||||||||| || || || | ||||||||||||||||||||||||||
Sbjct: 726 ggccgcaccgtcaccagcaacaacgtcgcccaccccggctggcagttcggccagaccttc 785
Query: 672 gagggcggccagttct 687
||||| ||||||||||
Sbjct: 786 gagggtggccagttct 801
Score = 60.0 bits (30), Expect = 2e-006
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 885 gctatgctgaggctgctaatctagcacccgcctagacgtttccctt 930
|||||||||||||||||||| |||||||||| ||||||||| ||||
Sbjct: 960 gctatgctgaggctgctaat-tagcacccgcttagacgttttcctt 1004
>ref|XM_475418.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 741
Score = 769 bits (388), Expect = 0.0
Identities = 559/616 (90%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||| |||||||||||||||||| ||||| ||||||| ||| ||||||
Sbjct: 124 ggcggggcttgcggttacggcaacctgtacagccaagggtatggcacgaacaccgcggcg 183
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgc 191
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 184 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtgc 243
Query: 192 gacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctgc 251
||||||| |||| | | ||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 244 gacaacgccgggagttcgtgcctgccgggctccatcaccgtgacggccaccaacttctgc 303
Query: 252 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgcac 311
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 304 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccccgccctcac 363
Query: 312 ttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgccc 371
|||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |||
Sbjct: 364 ttcgacatggccgagccggcattcctccacatcgcccagtaccgcgccggcatcgtcccc 423
Query: 372 gtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatccggttcaccatcaacggg 431
||| | ||| | || |||||||||||||||||||| || || |||||||| | ||||||
Sbjct: 424 gtctccttccgcagggtgccgtgcgtgaagaagggtggggtcaggttcaccgtgaacggg 483
Query: 432 cactcctacttcaacctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctcc 491
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 484 cactcctacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgtccgctcc 543
Query: 492 gtctccatccggggctcccgcacggggtggcagcccatgtcccggaactggggccagaac 551
||||||||| ||| || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 544 gtctccatcaaggggtcgcgcaccgggtggcagcccatgtcgcggaactggggccagaac 603
Query: 552 tggcagagcaactcgtacctggacaggcaggcgctctcgttccaggtcaccgccagcgac 611
|||||||||||| ||| ||| ||| | ||| ||||| |||||||||||||||||||||
Sbjct: 604 tggcagagcaacgcgttcctcgacggccagagcctctccttccaggtcaccgccagcgac 663
Query: 612 ggccgcaccgtcaccagcaacggcgccgtccccgccggctggcagttcggccagaccttc 671
||||||||||||||||||||| || || || | ||||||||||||||||||||||||||
Sbjct: 664 ggccgcaccgtcaccagcaacaacgtcgcccaccccggctggcagttcggccagaccttc 723
Query: 672 gagggcggccagttct 687
||||| ||||||||||
Sbjct: 724 gagggtggccagttct 739
>ref|NM_190380.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 756
Score = 710 bits (358), Expect = 0.0
Identities = 544/606 (89%)
Strand = Plus / Plus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
||||| || |||||||||||||| ||||||||||| | |||||||||||||||||||| |
Sbjct: 151 gggtatgggaacctgtacagcaccgggtacggcaccaacacggcggcgctgagcacggtg 210
Query: 144 ctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgcgacaacgacggg 203
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 211 ctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtgcgacaacgatggg 270
Query: 204 cggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactac 263
| ||||||||||||||||| | |||||||||| ||||||||| | |||||||| ||||||
Sbjct: 271 cagtggtgcctgccgggcagcgtcaccgtcaccgccaccaacctgtgcccgccgaactac 330
Query: 264 ggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggcc 323
| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 331 gcgctccccaacgacgacggcggctggtgcaacccgccgcgcccccacttcgacatggcc 390
Query: 324 gagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcagg 383
|||||||||||||||| |||| ||||||||||||||||||||||||| | | |||
Sbjct: 391 gagccggccttcctccagatcggcgtgtaccgcgccggcatcgtgcccgtctcctacaga 450
Query: 384 agagtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttc 443
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 451 agggtgccgtgcgtgaagaagggcgggatcaggttcaccatcaacgggcactcctacttc 510
Query: 444 aacctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccgg 503
|||||||| || |||||||||||||| ||| | |||||||||| ||||| || ||| |
Sbjct: 511 aacctggttcttgtgaccaacgtggccggcccaggcgacgtgcagtccgtgtcgatcaag 570
Query: 504 ggctcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|| ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 571 gggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcagagcaac 630
Query: 564 tcgtacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtc 623
|| ||||| ||| | ||| ||||| ||||||||| ||| |||||||||||||||||||
Sbjct: 631 tcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgcaccgtc 690
Query: 624 accagcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccag 683
||||||||| || ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 691 accagcaacaacgtcgtgccggccggctggcagttcggccagaccttcgagggcggccag 750
Query: 684 ttctga 689
||||||
Sbjct: 751 ttctga 756
>dbj|AK070463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M24, full
insert sequence
Length = 1341
Score = 702 bits (354), Expect = 0.0
Identities = 543/606 (89%)
Strand = Plus / Plus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
||||| || |||||||||||||| ||||||||||| | |||||||||||||||||||| |
Sbjct: 248 gggtatgggaacctgtacagcaccgggtacggcaccaacacggcggcgctgagcacggtg 307
Query: 144 ctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgcgacaacgacggg 203
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 308 ctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtgcgacaacgatggg 367
Query: 204 cggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactac 263
| ||||||||||||||||| | |||||||||| ||||||||| | |||||||| ||||||
Sbjct: 368 cagtggtgcctgccgggcagcgtcaccgtcaccgccaccaacctgtgcccgccgaactac 427
Query: 264 ggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggcc 323
| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 428 gcgctccccaacgacgacggcggctggtgcaacccgccgcgcccccacttcgacatggcc 487
Query: 324 gagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcagg 383
|||||||||||||||| |||| ||||||||||||||||||||||||| | | |||
Sbjct: 488 gagccggccttcctccagatcggcgtgtaccgcgccggcatcgtgcccgtctcctacaga 547
Query: 384 agagtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttc 443
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 548 agggtgccgtgcgtgaagaagggcgggatcaggttcaccatcaacgggcactcctacttc 607
Query: 444 aacctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccgg 503
|||||| | || |||||||||||||| ||| | |||||||||| ||||| || ||| |
Sbjct: 608 aacctgattcttgtgaccaacgtggccggcccaggcgacgtgcagtccgtgtcgatcaag 667
Query: 504 ggctcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|| ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 668 gggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcagagcaac 727
Query: 564 tcgtacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtc 623
|| ||||| ||| | ||| ||||| ||||||||| ||| |||||||||||||||||||
Sbjct: 728 tcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgcaccgtc 787
Query: 624 accagcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccag 683
||||||||| || ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 788 accagcaacaacgtcgtgccggccggctggcagttcggccagaccttcgagggcggccag 847
Query: 684 ttctga 689
||||||
Sbjct: 848 ttctga 853
>gb|U30477.1|OSU30477 Oryza sativa (japonica cultivar-group) expansin Os-EXPA2 (Os-EXPA2)
mRNA, complete cds
Length = 1323
Score = 690 bits (348), Expect = 0.0
Identities = 541/606 (89%)
Strand = Plus / Plus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
||||| || |||||||||||||| ||||||||||| | |||||||||||||||||||| |
Sbjct: 233 gggtatgggaacctgtacagcaccgggtacggcaccaacacggcggcgctgagcacggtg 292
Query: 144 ctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgcgacaacgacggg 203
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||
Sbjct: 293 ctgttcaacgacggcgcggcgtgccggtcgtgctacgagctgcggtgcgacaacgatggg 352
Query: 204 cggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctgcccgcccaactac 263
| ||||||||||||||||| | |||||||||| ||||||||| | |||||||| ||||||
Sbjct: 353 cagtggtgcctgccgggcagcgtcaccgtcaccgccaccaacctgtgcccgccgaactac 412
Query: 264 ggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgcacttcgacatggcc 323
| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 413 gcgctccccaacgacgacggcggctggtgcaacccgccgcgcccccacttcgacatggcc 472
Query: 324 gagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcagg 383
|||||||||||||||| |||| ||||||||||||||||||||||||| | | |||
Sbjct: 473 gagccggccttcctccagatcggcgtgtaccgcgccggcatcgtgcccgtctcctacaga 532
Query: 384 agagtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttc 443
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 533 agggtgccgtgcgtgaagaagggcgggatcaggttcaccatcaacgggcactcctacttc 592
Query: 444 aacctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccgg 503
|||||||| || |||||||||||||| || | |||||||||| ||||| || ||| |
Sbjct: 593 aacctggttcttgtgaccaacgtggccggnccaggcgacgtgcagtccgtgtcgatcaag 652
Query: 504 ggctcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|| ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 653 gggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcagagcaac 712
Query: 564 tcgtacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtc 623
|| ||||| ||| | ||| ||||| ||||||||| ||| |||||||||||||||||||
Sbjct: 713 tcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgcaccgtc 772
Query: 624 accagcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccag 683
||||||||| || ||| || |||||||||||||||| ||||||||||||||||||||||
Sbjct: 773 accagcaacaacgtcgtgccggccggctggcagttcgnccagaccttcgagggcggccag 832
Query: 684 ttctga 689
||||||
Sbjct: 833 ttctga 838
>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0018K15, complete sequence
Length = 168519
Score = 430 bits (217), Expect = e-118
Identities = 283/305 (92%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
||||||| || ||||| |||||||||||||||||| ||||| ||||||| ||| ||||
Sbjct: 39034 caggcggggcttgcggttacggcaacctgtacagccaagggtatggcacgaacaccgcgg 38975
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggt 189
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 38974 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggt 38915
Query: 190 gcgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttct 249
||||||||| |||| | | ||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 38914 gcgacaacgccgggagttcgtgcctgccgggctccatcaccgtgacggccaccaacttct 38855
Query: 250 gcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgc 309
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 38854 gcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccccgccctc 38795
Query: 310 acttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgc 369
|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |
Sbjct: 38794 acttcgacatggccgagccggcattcctccacatcgcccagtaccgcgccggcatcgtcc 38735
Query: 370 ccgtc 374
|||||
Sbjct: 38734 ccgtc 38730
Score = 359 bits (181), Expect = 2e-096
Identities = 271/301 (90%)
Strand = Plus / Minus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
|||||||||||||||||||| || || |||||||| | |||||||||||||||||||||
Sbjct: 38201 gtgccgtgcgtgaagaagggtggggtcaggttcaccgtgaacgggcactcctacttcaac 38142
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct: 38141 ctggtgctggtgaccaacgtggccggcgccggcgacgtccgctccgtctccatcaagggg 38082
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 38081 tcgcgcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcg 38022
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
| ||| ||| | ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 38021 ttcctcgacggccagagcctctccttccaggtcaccgccagcgacggccgcaccgtcacc 37962
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || || || | ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 37961 agcaacaacgtcgcccaccccggctggcagttcggccagaccttcgagggtggccagttc 37902
Query: 687 t 687
|
Sbjct: 37901 t 37901
Score = 60.0 bits (30), Expect = 2e-006
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 885 gctatgctgaggctgctaatctagcacccgcctagacgtttccctt 930
|||||||||||||||||||| |||||||||| ||||||||| ||||
Sbjct: 37742 gctatgctgaggctgctaat-tagcacccgcttagacgttttcctt 37698
>gb|AACV01012416.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012416, whole
genome shotgun sequence
Length = 33179
Score = 430 bits (217), Expect = e-118
Identities = 283/305 (92%)
Strand = Plus / Plus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
||||||| || ||||| |||||||||||||||||| ||||| ||||||| ||| ||||
Sbjct: 9055 caggcggggcttgcggttacggcaacctgtacagccaagggtatggcacgaacaccgcgg 9114
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggt 189
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9115 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggt 9174
Query: 190 gcgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttct 249
||||||||| |||| | | ||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 9175 gcgacaacgccgggagttcgtgcctgccgggctccatcaccgtgacggccaccaacttct 9234
Query: 250 gcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgc 309
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 9235 gcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccccgccctc 9294
Query: 310 acttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgc 369
|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |
Sbjct: 9295 acttcgacatggccgagccggcattcctccacatcgcccagtaccgcgccggcatcgtcc 9354
Query: 370 ccgtc 374
|||||
Sbjct: 9355 ccgtc 9359
Score = 359 bits (181), Expect = 2e-096
Identities = 271/301 (90%)
Strand = Plus / Plus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
|||||||||||||||||||| || || |||||||| | |||||||||||||||||||||
Sbjct: 9888 gtgccgtgcgtgaagaagggtggggtcaggttcaccgtgaacgggcactcctacttcaac 9947
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct: 9948 ctggtgctggtgaccaacgtggccggcgccggcgacgtccgctccgtctccatcaagggg 10007
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 10008 tcgcgcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcg 10067
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
| ||| ||| | ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10068 ttcctcgacggccagagcctctccttccaggtcaccgccagcgacggccgcaccgtcacc 10127
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || || || | ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10128 agcaacaacgtcgcccaccccggctggcagttcggccagaccttcgagggtggccagttc 10187
Query: 687 t 687
|
Sbjct: 10188 t 10188
Score = 60.0 bits (30), Expect = 2e-006
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 885 gctatgctgaggctgctaatctagcacccgcctagacgtttccctt 930
|||||||||||||||||||| |||||||||| ||||||||| ||||
Sbjct: 10347 gctatgctgaggctgctaat-tagcacccgcttagacgttttcctt 10391
>ref|NT_107213.1| Oryza sativa (japonica cultivar-group)
Length = 2036819
Score = 430 bits (217), Expect = e-118
Identities = 283/305 (92%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
||||||| || ||||| |||||||||||||||||| ||||| ||||||| ||| ||||
Sbjct: 1907334 caggcggggcttgcggttacggcaacctgtacagccaagggtatggcacgaacaccgcgg 1907275
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggt 189
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1907274 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggt 1907215
Query: 190 gcgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttct 249
||||||||| |||| | | ||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 1907214 gcgacaacgccgggagttcgtgcctgccgggctccatcaccgtgacggccaccaacttct 1907155
Query: 250 gcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgc 309
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 1907154 gcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccccgccctc 1907095
Query: 310 acttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgc 369
|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |
Sbjct: 1907094 acttcgacatggccgagccggcattcctccacatcgcccagtaccgcgccggcatcgtcc 1907035
Query: 370 ccgtc 374
|||||
Sbjct: 1907034 ccgtc 1907030
Score = 359 bits (181), Expect = 2e-096
Identities = 271/301 (90%)
Strand = Plus / Minus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
|||||||||||||||||||| || || |||||||| | |||||||||||||||||||||
Sbjct: 1906501 gtgccgtgcgtgaagaagggtggggtcaggttcaccgtgaacgggcactcctacttcaac 1906442
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct: 1906441 ctggtgctggtgaccaacgtggccggcgccggcgacgtccgctccgtctccatcaagggg 1906382
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 1906381 tcgcgcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcg 1906322
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
| ||| ||| | ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1906321 ttcctcgacggccagagcctctccttccaggtcaccgccagcgacggccgcaccgtcacc 1906262
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || || || | ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1906261 agcaacaacgtcgcccaccccggctggcagttcggccagaccttcgagggtggccagttc 1906202
Query: 687 t 687
|
Sbjct: 1906201 t 1906201
Score = 60.0 bits (30), Expect = 2e-006
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 885 gctatgctgaggctgctaatctagcacccgcctagacgtttccctt 930
|||||||||||||||||||| |||||||||| ||||||||| ||||
Sbjct: 1906042 gctatgctgaggctgctaat-tagcacccgcttagacgttttcctt 1905998
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 430 bits (217), Expect = e-118
Identities = 283/305 (92%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
||||||| || ||||| |||||||||||||||||| ||||| ||||||| ||| ||||
Sbjct: 5729502 caggcggggcttgcggttacggcaacctgtacagccaagggtatggcacgaacaccgcgg 5729443
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggt 189
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5729442 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggt 5729383
Query: 190 gcgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttct 249
||||||||| |||| | | ||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 5729382 gcgacaacgccgggagttcgtgcctgccgggctccatcaccgtgacggccaccaacttct 5729323
Query: 250 gcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgc 309
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 5729322 gcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccccgccctc 5729263
Query: 310 acttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgc 369
|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |
Sbjct: 5729262 acttcgacatggccgagccggcattcctccacatcgcccagtaccgcgccggcatcgtcc 5729203
Query: 370 ccgtc 374
|||||
Sbjct: 5729202 ccgtc 5729198
Score = 359 bits (181), Expect = 2e-096
Identities = 271/301 (90%)
Strand = Plus / Minus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
|||||||||||||||||||| || || |||||||| | |||||||||||||||||||||
Sbjct: 5728669 gtgccgtgcgtgaagaagggtggggtcaggttcaccgtgaacgggcactcctacttcaac 5728610
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct: 5728609 ctggtgctggtgaccaacgtggccggcgccggcgacgtccgctccgtctccatcaagggg 5728550
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 5728549 tcgcgcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcg 5728490
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
| ||| ||| | ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5728489 ttcctcgacggccagagcctctccttccaggtcaccgccagcgacggccgcaccgtcacc 5728430
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || || || | ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5728429 agcaacaacgtcgcccaccccggctggcagttcggccagaccttcgagggtggccagttc 5728370
Query: 687 t 687
|
Sbjct: 5728369 t 5728369
Score = 60.0 bits (30), Expect = 2e-006
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 885 gctatgctgaggctgctaatctagcacccgcctagacgtttccctt 930
|||||||||||||||||||| |||||||||| ||||||||| ||||
Sbjct: 5728210 gctatgctgaggctgctaat-tagcacccgcttagacgttttcctt 5728166
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 430 bits (217), Expect = e-118
Identities = 283/305 (92%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
||||||| || ||||| |||||||||||||||||| ||||| ||||||| ||| ||||
Sbjct: 23029815 caggcggggcttgcggttacggcaacctgtacagccaagggtatggcacgaacaccgcgg 23029756
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggt 189
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 23029755 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggt 23029696
Query: 190 gcgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttct 249
||||||||| |||| | | ||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 23029695 gcgacaacgccgggagttcgtgcctgccgggctccatcaccgtgacggccaccaacttct 23029636
Query: 250 gcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgc 309
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 23029635 gcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccccgccctc 23029576
Query: 310 acttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgc 369
|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |
Sbjct: 23029575 acttcgacatggccgagccggcattcctccacatcgcccagtaccgcgccggcatcgtcc 23029516
Query: 370 ccgtc 374
|||||
Sbjct: 23029515 ccgtc 23029511
Score = 359 bits (181), Expect = 2e-096
Identities = 271/301 (90%)
Strand = Plus / Minus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
|||||||||||||||||||| || || |||||||| | |||||||||||||||||||||
Sbjct: 23028982 gtgccgtgcgtgaagaagggtggggtcaggttcaccgtgaacgggcactcctacttcaac 23028923
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct: 23028922 ctggtgctggtgaccaacgtggccggcgccggcgacgtccgctccgtctccatcaagggg 23028863
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 23028862 tcgcgcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcg 23028803
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
| ||| ||| | ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 23028802 ttcctcgacggccagagcctctccttccaggtcaccgccagcgacggccgcaccgtcacc 23028743
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || || || | ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 23028742 agcaacaacgtcgcccaccccggctggcagttcggccagaccttcgagggtggccagttc 23028683
Query: 687 t 687
|
Sbjct: 23028682 t 23028682
Score = 77.8 bits (39), Expect = 1e-011
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 223 ccatcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacg 282
|||||||| |||||||||||||||| |||||||| |||| | || |||||| || ||
Sbjct: 11557646 ccatcaccatcacggccaccaacttatgcccgcctaactgggcgctgcccagcaacagcg 11557587
Query: 283 gcggctggtgcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
|||| ||||||||||| ||||| | ||||||||||||| | |||||||||
Sbjct: 11557586 gcgggtggtgcaacccaccgcggcagcacttcgacatgtcacagccggcct 11557536
Score = 69.9 bits (35), Expect = 3e-009
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| || || |||||||||||||||| | | |||||||| || || ||||
Sbjct: 11514724 caggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcgg 11514665
Query: 130 cgctgagcacggcgctgttcaacgacggcgc 160
|||||||| ||||||||||||||||||||||
Sbjct: 11514664 cgctgagctcggcgctgttcaacgacggcgc 11514634
Score = 69.9 bits (35), Expect = 3e-009
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 223 ccatcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacg 282
|||||||| |||||||||||||| | |||||||||||||||| ||||||| ||
Sbjct: 11514565 ccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccg 11514506
Query: 283 gcggctggtgcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
|||| |||||||||||||| ||| ||||||||||||| | |||||||||
Sbjct: 11514505 gcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcct 11514455
Score = 61.9 bits (31), Expect = 6e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 126 gcggcgctgagcacggcgctgttcaacgacggcgc 160
|||||||||||| ||||||||||||||||||||||
Sbjct: 11557752 gcggcgctgagctcggcgctgttcaacgacggcgc 11557718
Score = 60.0 bits (30), Expect = 2e-006
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 885 gctatgctgaggctgctaatctagcacccgcctagacgtttccctt 930
|||||||||||||||||||| |||||||||| ||||||||| ||||
Sbjct: 23028523 gctatgctgaggctgctaat-tagcacccgcttagacgttttcctt 23028479
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 535 ggaactggggccagaactggcagagcaac 563
||||||||||||| |||||||||||||||
Sbjct: 11514107 ggaactggggccaaaactggcagagcaac 11514079
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 430 bits (217), Expect = e-118
Identities = 283/305 (92%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
||||||| || ||||| |||||||||||||||||| ||||| ||||||| ||| ||||
Sbjct: 23353498 caggcggggcttgcggttacggcaacctgtacagccaagggtatggcacgaacaccgcgg 23353439
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggt 189
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 23353438 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggt 23353379
Query: 190 gcgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttct 249
||||||||| |||| | | ||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 23353378 gcgacaacgccgggagttcgtgcctgccgggctccatcaccgtgacggccaccaacttct 23353319
Query: 250 gcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgc 309
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 23353318 gcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccccgccctc 23353259
Query: 310 acttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgc 369
|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |
Sbjct: 23353258 acttcgacatggccgagccggcattcctccacatcgcccagtaccgcgccggcatcgtcc 23353199
Query: 370 ccgtc 374
|||||
Sbjct: 23353198 ccgtc 23353194
Score = 359 bits (181), Expect = 2e-096
Identities = 271/301 (90%)
Strand = Plus / Minus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
|||||||||||||||||||| || || |||||||| | |||||||||||||||||||||
Sbjct: 23352665 gtgccgtgcgtgaagaagggtggggtcaggttcaccgtgaacgggcactcctacttcaac 23352606
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct: 23352605 ctggtgctggtgaccaacgtggccggcgccggcgacgtccgctccgtctccatcaagggg 23352546
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 23352545 tcgcgcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcg 23352486
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
| ||| ||| | ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 23352485 ttcctcgacggccagagcctctccttccaggtcaccgccagcgacggccgcaccgtcacc 23352426
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || || || | ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 23352425 agcaacaacgtcgcccaccccggctggcagttcggccagaccttcgagggtggccagttc 23352366
Query: 687 t 687
|
Sbjct: 23352365 t 23352365
Score = 77.8 bits (39), Expect = 1e-011
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 223 ccatcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacg 282
|||||||| |||||||||||||||| |||||||| |||| | || |||||| || ||
Sbjct: 11294073 ccatcaccatcacggccaccaacttatgcccgcctaactgggcgctgcccagcaacagcg 11294014
Query: 283 gcggctggtgcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
|||| ||||||||||| ||||| | ||||||||||||| | |||||||||
Sbjct: 11294013 gcgggtggtgcaacccaccgcggcagcacttcgacatgtcacagccggcct 11293963
Score = 69.9 bits (35), Expect = 3e-009
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| || || |||||||||||||||| | | |||||||| || || ||||
Sbjct: 11318888 caggaggcgcgtgtggatacggcaacctgtacaacgccgggtacgggctgaacaacgcgg 11318829
Query: 130 cgctgagcacggcgctgttcaacgacggcgc 160
|||||||| ||||||||||||||||||||||
Sbjct: 11318828 cgctgagctcggcgctgttcaacgacggcgc 11318798
Score = 69.9 bits (35), Expect = 3e-009
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 223 ccatcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacg 282
|||||||| |||||||||||||| | |||||||||||||||| ||||||| ||
Sbjct: 11318729 ccatcaccatcacggccaccaacctgtgcccgcccaactacgcaaaaaaaagcgacgccg 11318670
Query: 283 gcggctggtgcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
|||| |||||||||||||| ||| ||||||||||||| | |||||||||
Sbjct: 11318669 gcgggtggtgcaacccgcctcgcaagcacttcgacatgtcgcagccggcct 11318619
Score = 61.9 bits (31), Expect = 6e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 126 gcggcgctgagcacggcgctgttcaacgacggcgc 160
|||||||||||| ||||||||||||||||||||||
Sbjct: 11294179 gcggcgctgagctcggcgctgttcaacgacggcgc 11294145
Score = 60.0 bits (30), Expect = 2e-006
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 885 gctatgctgaggctgctaatctagcacccgcctagacgtttccctt 930
|||||||||||||||||||| |||||||||| ||||||||| ||||
Sbjct: 23352206 gctatgctgaggctgctaat-tagcacccgcttagacgttttcctt 23352162
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 535 ggaactggggccagaactggcagagcaac 563
||||||||||||| |||||||||||||||
Sbjct: 11318271 ggaactggggccaaaactggcagagcaac 11318243
>gb|CV730571.1|CV730571 FLO--04-C21.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--04-C21,
mRNA sequence
Length = 506
Score = 389 bits (196), Expect = e-105
Identities = 319/360 (88%)
Strand = Plus / Plus
Query: 328 cggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagag 387
|||| ||||||| |||||| |||||||||||||||||||| |||||| | ||| | || |
Sbjct: 2 cggcattcctccacatcgcccagtaccgcgccggcatcgtccccgtctccttccgcaggg 61
Query: 388 tgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacc 447
||||||||||||||||||| || || |||||||| | ||||||||||||||||||||||
Sbjct: 62 tgccgtgcgtgaagaagggtggggtcaggttcaccgtgaacgggcactcctacttcaacc 121
Query: 448 tggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggct 507
|||||||||||||||||||||| || |||||||||| ||||||||||||||| ||| |
Sbjct: 122 tggtgctggtgaccaacgtggccggttccggcgacgtccgctccgtctccatcaaggggt 181
Query: 508 cccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgt 567
| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 182 cgcgcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcgt 241
Query: 568 acctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacca 627
||| ||| | ||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 242 tcctcgacggccagagcctctccttccaggtcaccgccagcgacggccgcaccgtcacca 301
Query: 628 gcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttct 687
||||| || || || | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 302 gcaacaacgtcgcccaccccggctggcagttcggccagaccttcgagggtggccagttct 361
>gb|AACV01002595.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002595, whole
genome shotgun sequence
Length = 39811
Score = 381 bits (192), Expect = e-103
Identities = 276/304 (90%)
Strand = Plus / Minus
Query: 71 aggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggc 130
|||||| || || ||||| || |||||||||||||| ||||||||||| | |||||||||
Sbjct: 10480 aggcggggcgtgtgggtatgggaacctgtacagcaccgggtacggcaccaacacggcggc 10421
Query: 131 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtg 190
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10420 gctgagcacggtgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtg 10361
Query: 191 cgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctg 250
||||||||| |||| ||||||||||||||||| | |||||||||| ||||||||| | ||
Sbjct: 10360 cgacaacgatgggcagtggtgcctgccgggcagcgtcaccgtcaccgccaccaacctgtg 10301
Query: 251 cccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgca 310
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 10300 cccgccgaactacgcgctccccaacgacgacggcggctggtgcaacccgccgcgccccca 10241
Query: 311 cttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcc 370
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 10240 cttcgacatggccgagccggccttcctccagatcggcgtgtaccgcgccggcatcgtgcc 10181
Query: 371 cgtc 374
||||
Sbjct: 10180 cgtc 10177
Score = 347 bits (175), Expect = 7e-093
Identities = 271/303 (89%)
Strand = Plus / Minus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 9803 gtgccgtgcgtgaagaagggcgggatcaggttcaccatcaacgggcactcctacttcaac 9744
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||| || |||||||||||||| ||| | |||||||||| ||||| || ||| |||
Sbjct: 9743 ctggttcttgtgaccaacgtggccggcccaggcgacgtgcagtccgtgtcgatcaagggg 9684
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9683 tccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcagagcaactcc 9624
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
||||| ||| | ||| ||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct: 9623 tacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgcaccgtcacc 9564
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9563 agcaacaacgtcgtgccggccggctggcagttcggccagaccttcgagggcggccagttc 9504
Query: 687 tga 689
|||
Sbjct: 9503 tga 9501
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 381 bits (192), Expect = e-103
Identities = 276/304 (90%)
Strand = Plus / Plus
Query: 71 aggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggc 130
|||||| || || ||||| || |||||||||||||| ||||||||||| | |||||||||
Sbjct: 35219785 aggcggggcgtgtgggtatgggaacctgtacagcaccgggtacggcaccaacacggcggc 35219844
Query: 131 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtg 190
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 35219845 gctgagcacggtgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtg 35219904
Query: 191 cgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctg 250
||||||||| |||| ||||||||||||||||| | |||||||||| ||||||||| | ||
Sbjct: 35219905 cgacaacgatgggcagtggtgcctgccgggcagcgtcaccgtcaccgccaccaacctgtg 35219964
Query: 251 cccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgca 310
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 35219965 cccgccgaactacgcgctccccaacgacgacggcggctggtgcaacccgccgcgccccca 35220024
Query: 311 cttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcc 370
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 35220025 cttcgacatggccgagccggccttcctccagatcggcgtgtaccgcgccggcatcgtgcc 35220084
Query: 371 cgtc 374
||||
Sbjct: 35220085 cgtc 35220088
Score = 347 bits (175), Expect = 7e-093
Identities = 271/303 (89%)
Strand = Plus / Plus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 35220462 gtgccgtgcgtgaagaagggcgggatcaggttcaccatcaacgggcactcctacttcaac 35220521
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||| || |||||||||||||| ||| | |||||||||| ||||| || ||| |||
Sbjct: 35220522 ctggttcttgtgaccaacgtggccggcccaggcgacgtgcagtccgtgtcgatcaagggg 35220581
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 35220582 tccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcagagcaactcc 35220641
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
||||| ||| | ||| ||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct: 35220642 tacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgcaccgtcacc 35220701
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35220702 agcaacaacgtcgtgccggccggctggcagttcggccagaccttcgagggcggccagttc 35220761
Query: 687 tga 689
|||
Sbjct: 35220762 tga 35220764
Score = 214 bits (108), Expect = 7e-053
Identities = 216/252 (85%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
|||||||||||| |||||||||||||||||| ||| || |||||| |||||| ||||||
Sbjct: 9523227 acggccaccaacctctgcccgcccaactacgcgctcgccggcgacgccggcgggtggtgc 9523286
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||||||||| ||||||||||||||||| |||||||| ||| | | ||||||||| |
Sbjct: 9523287 aacccgccgcggccgcacttcgacatggcggagccggcgttcaccaggatcgcgcaggcc 9523346
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
||||||||| | ||||| || || | || | ||| |||||| |||| |||||||||||
Sbjct: 9523347 cgcgccggcgtggtgccggtgcagtaccggcgcgtggcgtgcgcgaagcagggcggcatc 9523406
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
||||||||||||| ||| ||||||||||||||||||||||| || |||||||| | |||
Sbjct: 9523407 cggttcaccatcaccggccactcctacttcaacctggtgctcgtcaccaacgtcggcggc 9523466
Query: 474 gccggcgacgtg 485
||||||||||||
Sbjct: 9523467 gccggcgacgtg 9523478
Score = 125 bits (63), Expect = 5e-026
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 75 ggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctg 134
||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 9523071 ggcgcgtgcgggtacggcaacctgtacagcgccgggtacgggacgagcacggcggcgctg 9523130
Query: 135 agcacggcgctgttcaacgacgg 157
|||||||||||||||||| ||||
Sbjct: 9523131 agcacggcgctgttcaacaacgg 9523153
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||||||||| |||||||||||| |||||||| || | |||||||| ||| | |||||||
Sbjct: 8193624 caggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcgg 8193565
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgg 169
|||||||||||||||||||||||| ||||||| |||||||
Sbjct: 8193564 cgctgagcacggcgctgttcaacggcggcgcgtcgtgcgg 8193525
Score = 99.6 bits (50), Expect = 3e-018
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 223 ccatcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacg 282
|||||||||| ||||| |||||||||||||| || ||||||| ||| || |||||| ||
Sbjct: 8193465 ccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccg 8193406
Query: 283 gcggctggtgcaacccgccgcgcccgcacttcgacatg 320
|||| ||||||||||||||||||| ||||||||||||
Sbjct: 8193405 gcgggtggtgcaacccgccgcgccgccacttcgacatg 8193368
Score = 89.7 bits (45), Expect = 3e-015
Identities = 78/89 (87%)
Strand = Plus / Minus
Query: 81 tgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacg 140
||||||||||||||| |||||||| | |||||||| |||| |||| ||||||||||| ||
Sbjct: 8199327 tgcgggtacggcaacatgtacagcgccgggtacgggacgaacacgacggcgctgagctcg 8199268
Query: 141 gcgctgttcaacgacggcgcggcgtgcgg 169
||||||| | |||||||||| |||||||
Sbjct: 8199267 gcgctgtacggcgacggcgcgtcgtgcgg 8199239
Score = 73.8 bits (37), Expect = 2e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 583 cgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcgccgtcc 642
||||||| ||| ||||||||||||||||||||||||||||||| | || || || ||
Sbjct: 9523576 cgctctccttcagggtcaccgccagcgacggccgcaccgtcacctccgacaacgtcgccc 9523635
Query: 643 ccgccggctggcagttcggccagaccttcgagggcggccagttct 687
|| |||||||| ||||||||||||||| |||||||||||||
Sbjct: 9523636 cctccggctggtccttcggccagaccttctccggcggccagttct 9523680
Score = 73.8 bits (37), Expect = 2e-010
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 228 accgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggc 287
||||| ||||| ||||||| |||||||||||||||| || || |||||| ||||||
Sbjct: 8199174 accgtgacggcgaccaactactgcccgcccaactacagcgagtccggcgacgccggcggg 8199115
Query: 288 tggtgcaacccgccgcgcccgcacttcgacatg 320
||||||||||||||||| | ||||||||||||
Sbjct: 8199114 tggtgcaacccgccgcggcgccacttcgacatg 8199082
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 405 ggcggcatccggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaac 464
||||||||||||||| || | ||||||||| ||||||| | |||||||||||||| |||
Sbjct: 8193283 ggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaac 8193224
Query: 465 gt 466
||
Sbjct: 8193223 gt 8193222
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 533 ccggaactggggccagaactggcagagcaactcgtacct 571
|||||||||||| ||||||||||||||||| |||||||
Sbjct: 8198869 ccggaactggggggagaactggcagagcaacgcgtacct 8198831
Score = 52.0 bits (26), Expect = 6e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 537 aactggggccagaactggcagagcaactcgtacctggacaggcaggcgctctcgttcc 594
||||||||| |||||||||||||||| || ||| ||| |||||||||| |||||||
Sbjct: 8193151 aactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttcc 8193094
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 381 bits (192), Expect = e-103
Identities = 276/304 (90%)
Strand = Plus / Plus
Query: 71 aggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggc 130
|||||| || || ||||| || |||||||||||||| ||||||||||| | |||||||||
Sbjct: 9667168 aggcggggcgtgtgggtatgggaacctgtacagcaccgggtacggcaccaacacggcggc 9667227
Query: 131 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtg 190
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9667228 gctgagcacggtgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtg 9667287
Query: 191 cgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctg 250
||||||||| |||| ||||||||||||||||| | |||||||||| ||||||||| | ||
Sbjct: 9667288 cgacaacgatgggcagtggtgcctgccgggcagcgtcaccgtcaccgccaccaacctgtg 9667347
Query: 251 cccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgca 310
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 9667348 cccgccgaactacgcgctccccaacgacgacggcggctggtgcaacccgccgcgccccca 9667407
Query: 311 cttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcc 370
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 9667408 cttcgacatggccgagccggccttcctccagatcggcgtgtaccgcgccggcatcgtgcc 9667467
Query: 371 cgtc 374
||||
Sbjct: 9667468 cgtc 9667471
Score = 347 bits (175), Expect = 7e-093
Identities = 271/303 (89%)
Strand = Plus / Plus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 9667845 gtgccgtgcgtgaagaagggcgggatcaggttcaccatcaacgggcactcctacttcaac 9667904
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||| || |||||||||||||| ||| | |||||||||| ||||| || ||| |||
Sbjct: 9667905 ctggttcttgtgaccaacgtggccggcccaggcgacgtgcagtccgtgtcgatcaagggg 9667964
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9667965 tccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcagagcaactcc 9668024
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
||||| ||| | ||| ||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct: 9668025 tacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgcaccgtcacc 9668084
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9668085 agcaacaacgtcgtgccggccggctggcagttcggccagaccttcgagggcggccagttc 9668144
Query: 687 tga 689
|||
Sbjct: 9668145 tga 9668147
>dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485B12
Length = 156047
Score = 381 bits (192), Expect = e-103
Identities = 276/304 (90%)
Strand = Plus / Plus
Query: 71 aggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggc 130
|||||| || || ||||| || |||||||||||||| ||||||||||| | |||||||||
Sbjct: 146265 aggcggggcgtgtgggtatgggaacctgtacagcaccgggtacggcaccaacacggcggc 146324
Query: 131 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtg 190
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 146325 gctgagcacggtgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtg 146384
Query: 191 cgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctg 250
||||||||| |||| ||||||||||||||||| | |||||||||| ||||||||| | ||
Sbjct: 146385 cgacaacgatgggcagtggtgcctgccgggcagcgtcaccgtcaccgccaccaacctgtg 146444
Query: 251 cccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgca 310
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 146445 cccgccgaactacgcgctccccaacgacgacggcggctggtgcaacccgccgcgccccca 146504
Query: 311 cttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcc 370
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 146505 cttcgacatggccgagccggccttcctccagatcggcgtgtaccgcgccggcatcgtgcc 146564
Query: 371 cgtc 374
||||
Sbjct: 146565 cgtc 146568
Score = 347 bits (175), Expect = 7e-093
Identities = 271/303 (89%)
Strand = Plus / Plus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 146942 gtgccgtgcgtgaagaagggcgggatcaggttcaccatcaacgggcactcctacttcaac 147001
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||| || |||||||||||||| ||| | |||||||||| ||||| || ||| |||
Sbjct: 147002 ctggttcttgtgaccaacgtggccggcccaggcgacgtgcagtccgtgtcgatcaagggg 147061
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 147062 tccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcagagcaactcc 147121
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
||||| ||| | ||| ||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct: 147122 tacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgcaccgtcacc 147181
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147182 agcaacaacgtcgtgccggccggctggcagttcggccagaccttcgagggcggccagttc 147241
Query: 687 tga 689
|||
Sbjct: 147242 tga 147244
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0031D02
Length = 183692
Score = 381 bits (192), Expect = e-103
Identities = 276/304 (90%)
Strand = Plus / Plus
Query: 71 aggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggc 130
|||||| || || ||||| || |||||||||||||| ||||||||||| | |||||||||
Sbjct: 18199 aggcggggcgtgtgggtatgggaacctgtacagcaccgggtacggcaccaacacggcggc 18258
Query: 131 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtg 190
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 18259 gctgagcacggtgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtg 18318
Query: 191 cgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctg 250
||||||||| |||| ||||||||||||||||| | |||||||||| ||||||||| | ||
Sbjct: 18319 cgacaacgatgggcagtggtgcctgccgggcagcgtcaccgtcaccgccaccaacctgtg 18378
Query: 251 cccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgca 310
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 18379 cccgccgaactacgcgctccccaacgacgacggcggctggtgcaacccgccgcgccccca 18438
Query: 311 cttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcc 370
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 18439 cttcgacatggccgagccggccttcctccagatcggcgtgtaccgcgccggcatcgtgcc 18498
Query: 371 cgtc 374
||||
Sbjct: 18499 cgtc 18502
Score = 347 bits (175), Expect = 7e-093
Identities = 271/303 (89%)
Strand = Plus / Plus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 18876 gtgccgtgcgtgaagaagggcgggatcaggttcaccatcaacgggcactcctacttcaac 18935
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||| || |||||||||||||| ||| | |||||||||| ||||| || ||| |||
Sbjct: 18936 ctggttcttgtgaccaacgtggccggcccaggcgacgtgcagtccgtgtcgatcaagggg 18995
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 18996 tccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcagagcaactcc 19055
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
||||| ||| | ||| ||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct: 19056 tacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgcaccgtcacc 19115
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19116 agcaacaacgtcgtgccggccggctggcagttcggccagaccttcgagggcggccagttc 19175
Query: 687 tga 689
|||
Sbjct: 19176 tga 19178
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 381 bits (192), Expect = e-103
Identities = 276/304 (90%)
Strand = Plus / Plus
Query: 71 aggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggc 130
|||||| || || ||||| || |||||||||||||| ||||||||||| | |||||||||
Sbjct: 9435214 aggcggggcgtgtgggtatgggaacctgtacagcaccgggtacggcaccaacacggcggc 9435273
Query: 131 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtg 190
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9435274 gctgagcacggtgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtg 9435333
Query: 191 cgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctg 250
||||||||| |||| ||||||||||||||||| | |||||||||| ||||||||| | ||
Sbjct: 9435334 cgacaacgatgggcagtggtgcctgccgggcagcgtcaccgtcaccgccaccaacctgtg 9435393
Query: 251 cccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgca 310
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 9435394 cccgccgaactacgcgctccccaacgacgacggcggctggtgcaacccgccgcgccccca 9435453
Query: 311 cttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcc 370
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 9435454 cttcgacatggccgagccggccttcctccagatcggcgtgtaccgcgccggcatcgtgcc 9435513
Query: 371 cgtc 374
||||
Sbjct: 9435514 cgtc 9435517
Score = 347 bits (175), Expect = 7e-093
Identities = 271/303 (89%)
Strand = Plus / Plus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 9435891 gtgccgtgcgtgaagaagggcgggatcaggttcaccatcaacgggcactcctacttcaac 9435950
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||| || |||||||||||||| ||| | |||||||||| ||||| || ||| |||
Sbjct: 9435951 ctggttcttgtgaccaacgtggccggcccaggcgacgtgcagtccgtgtcgatcaagggg 9436010
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9436011 tccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcagagcaactcc 9436070
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
||||| ||| | ||| ||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct: 9436071 tacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgcaccgtcacc 9436130
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9436131 agcaacaacgtcgtgccggccggctggcagttcggccagaccttcgagggcggccagttc 9436190
Query: 687 tga 689
|||
Sbjct: 9436191 tga 9436193
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 381 bits (192), Expect = e-103
Identities = 276/304 (90%)
Strand = Plus / Plus
Query: 71 aggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggc 130
|||||| || || ||||| || |||||||||||||| ||||||||||| | |||||||||
Sbjct: 34636935 aggcggggcgtgtgggtatgggaacctgtacagcaccgggtacggcaccaacacggcggc 34636994
Query: 131 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtg 190
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 34636995 gctgagcacggtgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtg 34637054
Query: 191 cgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctg 250
||||||||| |||| ||||||||||||||||| | |||||||||| ||||||||| | ||
Sbjct: 34637055 cgacaacgatgggcagtggtgcctgccgggcagcgtcaccgtcaccgccaccaacctgtg 34637114
Query: 251 cccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgca 310
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 34637115 cccgccgaactacgcgctccccaacgacgacggcggctggtgcaacccgccgcgccccca 34637174
Query: 311 cttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcc 370
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 34637175 cttcgacatggccgagccggccttcctccagatcggcgtgtaccgcgccggcatcgtgcc 34637234
Query: 371 cgtc 374
||||
Sbjct: 34637235 cgtc 34637238
Score = 347 bits (175), Expect = 7e-093
Identities = 271/303 (89%)
Strand = Plus / Plus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 34637612 gtgccgtgcgtgaagaagggcgggatcaggttcaccatcaacgggcactcctacttcaac 34637671
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||| || |||||||||||||| ||| | |||||||||| ||||| || ||| |||
Sbjct: 34637672 ctggttcttgtgaccaacgtggccggcccaggcgacgtgcagtccgtgtcgatcaagggg 34637731
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 34637732 tccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcagagcaactcc 34637791
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
||||| ||| | ||| ||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct: 34637792 tacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgcaccgtcacc 34637851
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34637852 agcaacaacgtcgtgccggccggctggcagttcggccagaccttcgagggcggccagttc 34637911
Query: 687 tga 689
|||
Sbjct: 34637912 tga 34637914
Score = 200 bits (101), Expect = 1e-048
Identities = 216/253 (85%), Gaps = 1/253 (0%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgccc-gcccaactacggcctccccagcgacgacggcggctggtg 292
|||||||||||| ||||||| ||||||||||| ||| || |||||| |||||| |||||
Sbjct: 9572940 acggccaccaacctctgccccgcccaactacgcgctcgccggcgacgccggcgggtggtg 9572999
Query: 293 caacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagta 352
|||||||||||| ||||||||||||||||| |||||||| ||| | | |||||||||
Sbjct: 9573000 caacccgccgcggccgcacttcgacatggcggagccggcgttcaccaggatcgcgcaggc 9573059
Query: 353 ccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcat 412
|||||||||| | ||||| || || | || | ||| |||||| |||| ||||||||||
Sbjct: 9573060 ccgcgccggcgtggtgccggtgcagtaccggcgcgtggcgtgcgcgaagcagggcggcat 9573119
Query: 413 ccggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| ||| ||||||||||||||||||||||| || |||||||| | ||
Sbjct: 9573120 ccggttcaccatcaccggccactcctacttcaacctggtgctcgtcaccaacgtcggcgg 9573179
Query: 473 cgccggcgacgtg 485
|||||||||||||
Sbjct: 9573180 cgccggcgacgtg 9573192
Score = 125 bits (63), Expect = 5e-026
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 75 ggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctg 134
||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 9572784 ggcgcgtgcgggtacggcaacctgtacagcgccgggtacgggacgagcacggcggcgctg 9572843
Query: 135 agcacggcgctgttcaacgacgg 157
|||||||||||||||||| ||||
Sbjct: 9572844 agcacggcgctgttcaacaacgg 9572866
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||||||||| |||||||||||| |||||||| || | |||||||| ||| | |||||||
Sbjct: 8244165 caggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcgg 8244106
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgg 169
|||||||||||||||||||||||| ||||||| |||||||
Sbjct: 8244105 cgctgagcacggcgctgttcaacggcggcgcgtcgtgcgg 8244066
Score = 99.6 bits (50), Expect = 3e-018
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 223 ccatcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacg 282
|||||||||| ||||| |||||||||||||| || ||||||| ||| || |||||| ||
Sbjct: 8244006 ccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccg 8243947
Query: 283 gcggctggtgcaacccgccgcgcccgcacttcgacatg 320
|||| ||||||||||||||||||| ||||||||||||
Sbjct: 8243946 gcgggtggtgcaacccgccgcgccgccacttcgacatg 8243909
Score = 73.8 bits (37), Expect = 2e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 583 cgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcgccgtcc 642
||||||| ||| ||||||||||||||||||||||||||||||| | || || || ||
Sbjct: 9573290 cgctctccttcagggtcaccgccagcgacggccgcaccgtcacctccgacaacgtcgccc 9573349
Query: 643 ccgccggctggcagttcggccagaccttcgagggcggccagttct 687
|| |||||||| ||||||||||||||| |||||||||||||
Sbjct: 9573350 cctccggctggtccttcggccagaccttctccggcggccagttct 9573394
Score = 63.9 bits (32), Expect = 2e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 229 ccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggct 288
|||| ||||| ||||||| ||||||||| |||||| || || |||||| |||||| |
Sbjct: 8249716 ccgtgacggcgaccaactactgcccgccaaactacagcgagtccggcgacgccggcgggt 8249657
Query: 289 ggtgcaacccgccgcgcccgcacttcgacatg 320
|||||||||||||||| | ||||||||||||
Sbjct: 8249656 ggtgcaacccgccgcggcgccacttcgacatg 8249625
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 405 ggcggcatccggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaac 464
||||||||||||||| || | ||||||||| ||||||| | |||||||||||||| |||
Sbjct: 8243824 ggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaac 8243765
Query: 465 gt 466
||
Sbjct: 8243764 gt 8243763
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 533 ccggaactggggccagaactggcagagcaactcgtacct 571
|||||||||||| ||||||||||||||||| |||||||
Sbjct: 8249411 ccggaactggggggagaactggcagagcaacgcgtacct 8249373
Score = 54.0 bits (27), Expect = 2e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 537 aactggggccagaactggcagagcaactcgtacctggacaggcaggcgctctcgttccag 596
||||||||| |||||||||||||||| || ||| ||| |||||||||| ||||||| |
Sbjct: 8243692 aactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgg 8243633
Query: 597 gtc 599
|||
Sbjct: 8243632 gtc 8243630
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 381 bits (192), Expect = e-103
Identities = 276/304 (90%)
Strand = Plus / Plus
Query: 71 aggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggc 130
|||||| || || ||||| || |||||||||||||| ||||||||||| | |||||||||
Sbjct: 35139115 aggcggggcgtgtgggtatgggaacctgtacagcaccgggtacggcaccaacacggcggc 35139174
Query: 131 gctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtg 190
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 35139175 gctgagcacggtgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtg 35139234
Query: 191 cgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctg 250
||||||||| |||| ||||||||||||||||| | |||||||||| ||||||||| | ||
Sbjct: 35139235 cgacaacgatgggcagtggtgcctgccgggcagcgtcaccgtcaccgccaccaacctgtg 35139294
Query: 251 cccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgca 310
|||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 35139295 cccgccgaactacgcgctccccaacgacgacggcggctggtgcaacccgccgcgccccca 35139354
Query: 311 cttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcatcgtgcc 370
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 35139355 cttcgacatggccgagccggccttcctccagatcggcgtgtaccgcgccggcatcgtgcc 35139414
Query: 371 cgtc 374
||||
Sbjct: 35139415 cgtc 35139418
Score = 347 bits (175), Expect = 7e-093
Identities = 271/303 (89%)
Strand = Plus / Plus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 35139792 gtgccgtgcgtgaagaagggcgggatcaggttcaccatcaacgggcactcctacttcaac 35139851
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||| || |||||||||||||| ||| | |||||||||| ||||| || ||| |||
Sbjct: 35139852 ctggttcttgtgaccaacgtggccggcccaggcgacgtgcagtccgtgtcgatcaagggg 35139911
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 35139912 tccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcagagcaactcc 35139971
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
||||| ||| | ||| ||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct: 35139972 tacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgcaccgtcacc 35140031
Query: 627 agcaacggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttc 686
|||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35140032 agcaacaacgtcgtgccggccggctggcagttcggccagaccttcgagggcggccagttc 35140091
Query: 687 tga 689
|||
Sbjct: 35140092 tga 35140094
Score = 214 bits (108), Expect = 7e-053
Identities = 216/252 (85%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
|||||||||||| |||||||||||||||||| ||| || |||||| |||||| ||||||
Sbjct: 9525445 acggccaccaacctctgcccgcccaactacgcgctcgccggcgacgccggcgggtggtgc 9525504
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||||||||| ||||||||||||||||| |||||||| ||| | | ||||||||| |
Sbjct: 9525505 aacccgccgcggccgcacttcgacatggcggagccggcgttcaccaggatcgcgcaggcc 9525564
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
||||||||| | ||||| || || | || | ||| |||||| |||| |||||||||||
Sbjct: 9525565 cgcgccggcgtggtgccggtgcagtaccggcgcgtggcgtgcgcgaagcagggcggcatc 9525624
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
||||||||||||| ||| ||||||||||||||||||||||| || |||||||| | |||
Sbjct: 9525625 cggttcaccatcaccggccactcctacttcaacctggtgctcgtcaccaacgtcggcggc 9525684
Query: 474 gccggcgacgtg 485
||||||||||||
Sbjct: 9525685 gccggcgacgtg 9525696
Score = 125 bits (63), Expect = 5e-026
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 75 ggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctg 134
||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 9525289 ggcgcgtgcgggtacggcaacctgtacagcgccgggtacgggacgagcacggcggcgctg 9525348
Query: 135 agcacggcgctgttcaacgacgg 157
|||||||||||||||||| ||||
Sbjct: 9525349 agcacggcgctgttcaacaacgg 9525371
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||||||||| |||||||||||| |||||||| || | |||||||| ||| | |||||||
Sbjct: 8195842 caggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcgg 8195783
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgg 169
|||||||||||||||||||||||| ||||||| |||||||
Sbjct: 8195782 cgctgagcacggcgctgttcaacggcggcgcgtcgtgcgg 8195743
Score = 99.6 bits (50), Expect = 3e-018
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 223 ccatcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacg 282
|||||||||| ||||| |||||||||||||| || ||||||| ||| || |||||| ||
Sbjct: 8195683 ccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccg 8195624
Query: 283 gcggctggtgcaacccgccgcgcccgcacttcgacatg 320
|||| ||||||||||||||||||| ||||||||||||
Sbjct: 8195623 gcgggtggtgcaacccgccgcgccgccacttcgacatg 8195586
Score = 89.7 bits (45), Expect = 3e-015
Identities = 78/89 (87%)
Strand = Plus / Minus
Query: 81 tgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacg 140
||||||||||||||| |||||||| | |||||||| |||| |||| ||||||||||| ||
Sbjct: 8201545 tgcgggtacggcaacatgtacagcgccgggtacgggacgaacacgacggcgctgagctcg 8201486
Query: 141 gcgctgttcaacgacggcgcggcgtgcgg 169
||||||| | |||||||||| |||||||
Sbjct: 8201485 gcgctgtacggcgacggcgcgtcgtgcgg 8201457
Score = 73.8 bits (37), Expect = 2e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 583 cgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcgccgtcc 642
||||||| ||| ||||||||||||||||||||||||||||||| | || || || ||
Sbjct: 9525794 cgctctccttcagggtcaccgccagcgacggccgcaccgtcacctccgacaacgtcgccc 9525853
Query: 643 ccgccggctggcagttcggccagaccttcgagggcggccagttct 687
|| |||||||| ||||||||||||||| |||||||||||||
Sbjct: 9525854 cctccggctggtccttcggccagaccttctccggcggccagttct 9525898
Score = 73.8 bits (37), Expect = 2e-010
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 228 accgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggc 287
||||| ||||| ||||||| |||||||||||||||| || || |||||| ||||||
Sbjct: 8201392 accgtgacggcgaccaactactgcccgcccaactacagcgagtccggcgacgccggcggg 8201333
Query: 288 tggtgcaacccgccgcgcccgcacttcgacatg 320
||||||||||||||||| | ||||||||||||
Sbjct: 8201332 tggtgcaacccgccgcggcgccacttcgacatg 8201300
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 405 ggcggcatccggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaac 464
||||||||||||||| || | ||||||||| ||||||| | |||||||||||||| |||
Sbjct: 8195501 ggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaac 8195442
Query: 465 gt 466
||
Sbjct: 8195441 gt 8195440
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 533 ccggaactggggccagaactggcagagcaactcgtacct 571
|||||||||||| ||||||||||||||||| |||||||
Sbjct: 8201087 ccggaactggggggagaactggcagagcaacgcgtacct 8201049
Score = 52.0 bits (26), Expect = 6e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 537 aactggggccagaactggcagagcaactcgtacctggacaggcaggcgctctcgttcc 594
||||||||| |||||||||||||||| || ||| ||| |||||||||| |||||||
Sbjct: 8195369 aactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttcc 8195312
>gb|C25149.1|C25149 C25149 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S5436_2A, mRNA sequence
Length = 428
Score = 317 bits (160), Expect = 7e-084
Identities = 269/304 (88%), Gaps = 1/304 (0%)
Strand = Plus / Plus
Query: 387 gtgccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaac 446
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 36 gtgccgtgcgtgaagaagggcgggatcaggttcaccatcaacgggcactcctacttcaac 95
Query: 447 ctggtgctggtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggc 506
||||| || |||||||||||||| ||| | |||||||||| ||||| || ||| |||
Sbjct: 96 ctggttcttgtgaccaacgtggccggcccaggcgacgtgcagtccgtgtcgatcaagggg 155
Query: 507 tcccgcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcg 566
||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 156 tccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcagagcaactcc 215
Query: 567 tacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcacc 626
||||| ||| | ||| ||||| ||||||||| ||| |||||||| |||||||||||||
Sbjct: 216 tacctcgacggccagagcctctccttccaggtcgccgtcagcgacgcccgcaccgtcacc 275
Query: 627 agcaacggcgccgtccccgccggctggc-agttcggccagaccttcgagggcggccagtt 685
|||||| || ||| || ||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 276 agcaacaacgtcgtgccggccggttggcaagttcggccagaccttcgagggcggccagtt 335
Query: 686 ctga 689
||||
Sbjct: 336 ctga 339
>gb|C72427.1|C72427 C72427 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1603_1A, mRNA sequence
Length = 441
Score = 276 bits (139), Expect = 2e-071
Identities = 268/305 (87%), Gaps = 6/305 (1%)
Strand = Plus / Plus
Query: 185 gcggtgcgacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaa 244
||||||||||||||| |||| ||||||||||||||||| | |||||||||| | ||||||
Sbjct: 1 gcggtgcgacaacgatgggcagtggtgcctgccgggcagcgtcaccgtcaccgncaccaa 60
Query: 245 cttctgcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcg 304
| | |||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 61 cctgtgcccgccgaactacgcgctccccaacgacgacggcggctggtgcaa-ccgccgcg 119
Query: 305 cccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtaccgcgccggcat 364
||| |||||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct: 120 cccccacttcgacatggccgagccgg-cttcctccagatcggcgtgtaccgcgccggcat 178
Query: 365 cgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatccggttcaccat 424
|||||||||| | | ||| || ||||||||||||||||||||||| ||| ||||||||||
Sbjct: 179 cgtgcccgtctcctacagaagggtgccgtgcgtgaagaagggcgggatcaggttcaccat 238
Query: 425 caacgggcactcctac-ttcaacctggtgc--tggtgaccaacgtggcgggcgccggcga 481
||||||||||| |||| ||||||||||| | || ||||||||||||| ||| | |||||
Sbjct: 239 caacgggcacttctactttcaacctggttctttgttgaccaacgtggccggc-caggcga 297
Query: 482 cgtgc 486
|||||
Sbjct: 298 cgtgc 302
>gb|BE039217.1|BE039217 OA01E03 OA Oryza sativa (japonica cultivar-group) cDNA 5' similar
to expansin, mRNA sequence
Length = 607
Score = 272 bits (137), Expect = 3e-070
Identities = 228/257 (88%), Gaps = 1/257 (0%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||| |||||||||||||||||| ||||| ||||||| ||| ||||||
Sbjct: 193 ggcggggcttgcggttacggcaacctgtacagccaagggtatggcacgaacaccgcggcg 252
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgc 191
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 253 ctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtg- 311
Query: 192 gacaacgacgggcggtggtgcctgccgggcaccatcaccgtcacggccaccaacttctgc 251
||||||| |||| | | ||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 312 gacaacgccgggagttcgtgcctgccgggctccatcaccgtgacggccaccaacttctgg 371
Query: 252 ccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgcccgcac 311
|||||||||||||| || |||||||||||||| | |||||||||||| | || || |||
Sbjct: 372 ccgcccaactacgggcttcccagcgacgacgggcggtggtgcaacccggcccggcctcac 431
Query: 312 ttcgacatggccgagcc 328
|| ||||||| ||||||
Sbjct: 432 tttgacatgggcgagcc 448
>ref|XM_493787.1| Oryza sativa (japonica cultivar-group), Ozsa8506 predicted mRNA
Length = 747
Score = 214 bits (108), Expect = 7e-053
Identities = 216/252 (85%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
|||||||||||| |||||||||||||||||| ||| || |||||| |||||| ||||||
Sbjct: 292 acggccaccaacctctgcccgcccaactacgcgctcgccggcgacgccggcgggtggtgc 351
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||||||||| ||||||||||||||||| |||||||| ||| | | ||||||||| |
Sbjct: 352 aacccgccgcggccgcacttcgacatggcggagccggcgttcaccaggatcgcgcaggcc 411
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
||||||||| | ||||| || || | || | ||| |||||| |||| |||||||||||
Sbjct: 412 cgcgccggcgtggtgccggtgcagtaccggcgcgtggcgtgcgcgaagcagggcggcatc 471
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
||||||||||||| ||| ||||||||||||||||||||||| || |||||||| | |||
Sbjct: 472 cggttcaccatcaccggccactcctacttcaacctggtgctcgtcaccaacgtcggcggc 531
Query: 474 gccggcgacgtg 485
||||||||||||
Sbjct: 532 gccggcgacgtg 543
Score = 125 bits (63), Expect = 5e-026
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 75 ggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctg 134
||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 136 ggcgcgtgcgggtacggcaacctgtacagcgccgggtacgggacgagcacggcggcgctg 195
Query: 135 agcacggcgctgttcaacgacgg 157
|||||||||||||||||| ||||
Sbjct: 196 agcacggcgctgttcaacaacgg 218
Score = 73.8 bits (37), Expect = 2e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 583 cgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcgccgtcc 642
||||||| ||| ||||||||||||||||||||||||||||||| | || || || ||
Sbjct: 641 cgctctccttcagggtcaccgccagcgacggccgcaccgtcacctccgacaacgtcgccc 700
Query: 643 ccgccggctggcagttcggccagaccttcgagggcggccagttct 687
|| |||||||| ||||||||||||||| |||||||||||||
Sbjct: 701 cctccggctggtccttcggccagaccttctccggcggccagttct 745
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 214 bits (108), Expect = 7e-053
Identities = 216/252 (85%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
|||||||||||| |||||||||||||||||| ||| || |||||| |||||| ||||||
Sbjct: 9523067 acggccaccaacctctgcccgcccaactacgcgctcgccggcgacgccggcgggtggtgc 9523126
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||||||||| ||||||||||||||||| |||||||| ||| | | ||||||||| |
Sbjct: 9523127 aacccgccgcggccgcacttcgacatggcggagccggcgttcaccaggatcgcgcaggcc 9523186
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
||||||||| | ||||| || || | || | ||| |||||| |||| |||||||||||
Sbjct: 9523187 cgcgccggcgtggtgccggtgcagtaccggcgcgtggcgtgcgcgaagcagggcggcatc 9523246
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
||||||||||||| ||| ||||||||||||||||||||||| || |||||||| | |||
Sbjct: 9523247 cggttcaccatcaccggccactcctacttcaacctggtgctcgtcaccaacgtcggcggc 9523306
Query: 474 gccggcgacgtg 485
||||||||||||
Sbjct: 9523307 gccggcgacgtg 9523318
Score = 125 bits (63), Expect = 5e-026
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 75 ggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctg 134
||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 9522911 ggcgcgtgcgggtacggcaacctgtacagcgccgggtacgggacgagcacggcggcgctg 9522970
Query: 135 agcacggcgctgttcaacgacgg 157
|||||||||||||||||| ||||
Sbjct: 9522971 agcacggcgctgttcaacaacgg 9522993
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||||||||| |||||||||||| |||||||| || | |||||||| ||| | |||||||
Sbjct: 8193464 caggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcgg 8193405
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgg 169
|||||||||||||||||||||||| ||||||| |||||||
Sbjct: 8193404 cgctgagcacggcgctgttcaacggcggcgcgtcgtgcgg 8193365
Score = 99.6 bits (50), Expect = 3e-018
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 223 ccatcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacg 282
|||||||||| ||||| |||||||||||||| || ||||||| ||| || |||||| ||
Sbjct: 8193305 ccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccg 8193246
Query: 283 gcggctggtgcaacccgccgcgcccgcacttcgacatg 320
|||| ||||||||||||||||||| ||||||||||||
Sbjct: 8193245 gcgggtggtgcaacccgccgcgccgccacttcgacatg 8193208
Score = 89.7 bits (45), Expect = 3e-015
Identities = 78/89 (87%)
Strand = Plus / Minus
Query: 81 tgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacg 140
||||||||||||||| |||||||| | |||||||| |||| |||| ||||||||||| ||
Sbjct: 8199167 tgcgggtacggcaacatgtacagcgccgggtacgggacgaacacgacggcgctgagctcg 8199108
Query: 141 gcgctgttcaacgacggcgcggcgtgcgg 169
||||||| | |||||||||| |||||||
Sbjct: 8199107 gcgctgtacggcgacggcgcgtcgtgcgg 8199079
Score = 73.8 bits (37), Expect = 2e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 583 cgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcgccgtcc 642
||||||| ||| ||||||||||||||||||||||||||||||| | || || || ||
Sbjct: 9523416 cgctctccttcagggtcaccgccagcgacggccgcaccgtcacctccgacaacgtcgccc 9523475
Query: 643 ccgccggctggcagttcggccagaccttcgagggcggccagttct 687
|| |||||||| ||||||||||||||| |||||||||||||
Sbjct: 9523476 cctccggctggtccttcggccagaccttctccggcggccagttct 9523520
Score = 73.8 bits (37), Expect = 2e-010
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 228 accgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggc 287
||||| ||||| ||||||| |||||||||||||||| || || |||||| ||||||
Sbjct: 8199014 accgtgacggcgaccaactactgcccgcccaactacagcgagtccggcgacgccggcggg 8198955
Query: 288 tggtgcaacccgccgcgcccgcacttcgacatg 320
||||||||||||||||| | ||||||||||||
Sbjct: 8198954 tggtgcaacccgccgcggcgccacttcgacatg 8198922
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 405 ggcggcatccggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaac 464
||||||||||||||| || | ||||||||| ||||||| | |||||||||||||| |||
Sbjct: 8193123 ggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaac 8193064
Query: 465 gt 466
||
Sbjct: 8193063 gt 8193062
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 533 ccggaactggggccagaactggcagagcaactcgtacct 571
|||||||||||| ||||||||||||||||| |||||||
Sbjct: 8198709 ccggaactggggggagaactggcagagcaacgcgtacct 8198671
Score = 52.0 bits (26), Expect = 6e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 537 aactggggccagaactggcagagcaactcgtacctggacaggcaggcgctctcgttcc 594
||||||||| |||||||||||||||| || ||| ||| |||||||||| |||||||
Sbjct: 8192991 aactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttcc 8192934
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0424A08
Length = 151294
Score = 214 bits (108), Expect = 7e-053
Identities = 216/252 (85%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
|||||||||||| |||||||||||||||||| ||| || |||||| |||||| ||||||
Sbjct: 58874 acggccaccaacctctgcccgcccaactacgcgctcgccggcgacgccggcgggtggtgc 58933
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||||||||| ||||||||||||||||| |||||||| ||| | | ||||||||| |
Sbjct: 58934 aacccgccgcggccgcacttcgacatggcggagccggcgttcaccaggatcgcgcaggcc 58993
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
||||||||| | ||||| || || | || | ||| |||||| |||| |||||||||||
Sbjct: 58994 cgcgccggcgtggtgccggtgcagtaccggcgcgtggcgtgcgcgaagcagggcggcatc 59053
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
||||||||||||| ||| ||||||||||||||||||||||| || |||||||| | |||
Sbjct: 59054 cggttcaccatcaccggccactcctacttcaacctggtgctcgtcaccaacgtcggcggc 59113
Query: 474 gccggcgacgtg 485
||||||||||||
Sbjct: 59114 gccggcgacgtg 59125
Score = 125 bits (63), Expect = 5e-026
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 75 ggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctg 134
||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 58718 ggcgcgtgcgggtacggcaacctgtacagcgccgggtacgggacgagcacggcggcgctg 58777
Query: 135 agcacggcgctgttcaacgacgg 157
|||||||||||||||||| ||||
Sbjct: 58778 agcacggcgctgttcaacaacgg 58800
Score = 73.8 bits (37), Expect = 2e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 583 cgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcgccgtcc 642
||||||| ||| ||||||||||||||||||||||||||||||| | || || || ||
Sbjct: 59223 cgctctccttcagggtcaccgccagcgacggccgcaccgtcacctccgacaacgtcgccc 59282
Query: 643 ccgccggctggcagttcggccagaccttcgagggcggccagttct 687
|| |||||||| ||||||||||||||| |||||||||||||
Sbjct: 59283 cctccggctggtccttcggccagaccttctccggcggccagttct 59327
>gb|DQ062981.1| Oryza sativa (japonica cultivar-group) alpha-expansin 11 (EXPA11)
mRNA, partial cds
Length = 798
Score = 214 bits (108), Expect = 7e-053
Identities = 216/252 (85%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
|||||||||||| |||||||||||||||||| ||| || |||||| |||||| ||||||
Sbjct: 283 acggccaccaacctctgcccgcccaactacgcgctcgccggcgacgccggcgggtggtgc 342
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||||||||| ||||||||||||||||| |||||||| ||| | | ||||||||| |
Sbjct: 343 aacccgccgcggccgcacttcgacatggcggagccggcgttcaccaggatcgcgcaggcc 402
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
||||||||| | ||||| || || | || | ||| |||||| |||| |||||||||||
Sbjct: 403 cgcgccggcgtggtgccggtgcagtaccggcgcgtggcgtgcgcgaagcagggcggcatc 462
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
||||||||||||| ||| ||||||||||||||||||||||| || |||||||| | |||
Sbjct: 463 cggttcaccatcaccggccactcctacttcaacctggtgctcgtcaccaacgtcggcggc 522
Query: 474 gccggcgacgtg 485
||||||||||||
Sbjct: 523 gccggcgacgtg 534
Score = 125 bits (63), Expect = 5e-026
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 75 ggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctg 134
||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 127 ggcgcgtgcgggtacggcaacctgtacagcgccgggtacgggacgagcacggcggcgctg 186
Query: 135 agcacggcgctgttcaacgacgg 157
|||||||||||||||||| ||||
Sbjct: 187 agcacggcgctgttcaacaacgg 209
Score = 73.8 bits (37), Expect = 2e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 583 cgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcgccgtcc 642
||||||| ||| ||||||||||||||||||||||||||||||| | || || || ||
Sbjct: 632 cgctctccttcagggtcaccgccagcgacggccgcaccgtcacctccgacaacgtcgccc 691
Query: 643 ccgccggctggcagttcggccagaccttcgagggcggccagttct 687
|| |||||||| ||||||||||||||| |||||||||||||
Sbjct: 692 cctccggctggtccttcggccagaccttctccggcggccagttct 736
>gb|AU081601.1|AU081601 AU081601 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S0721_2Z, mRNA sequence
Length = 704
Score = 212 bits (107), Expect = 3e-052
Identities = 161/179 (89%)
Strand = Plus / Plus
Query: 511 gcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacc 570
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 46 gcaccgggtgccagcccatgtcccgcaactggggccagaactggcagagcaactcctacc 105
Query: 571 tggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagca 630
| ||| | ||| ||||| ||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 106 tcgacggccagagcctctccttccaggtcgccgtcagcgacggccgcaccgtcaccagca 165
Query: 631 acggcgccgtccccgccggctggcagttcggccagaccttcgagggcggccagttctga 689
|| || ||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 acaacgtcgtgccggccggctggcagttcggccagaccttcgagggcggccagttctga 224
>gb|AACV01000668.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000668, whole
genome shotgun sequence
Length = 31747
Score = 200 bits (101), Expect = 1e-048
Identities = 216/253 (85%), Gaps = 1/253 (0%)
Strand = Plus / Minus
Query: 234 acggccaccaacttctgccc-gcccaactacggcctccccagcgacgacggcggctggtg 292
|||||||||||| ||||||| ||||||||||| ||| || |||||| |||||| |||||
Sbjct: 5753 acggccaccaacctctgccccgcccaactacgcgctcgccggcgacgccggcgggtggtg 5694
Query: 293 caacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagta 352
|||||||||||| ||||||||||||||||| |||||||| ||| | | |||||||||
Sbjct: 5693 caacccgccgcggccgcacttcgacatggcggagccggcgttcaccaggatcgcgcaggc 5634
Query: 353 ccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcat 412
|||||||||| | ||||| || || | || | ||| |||||| |||| ||||||||||
Sbjct: 5633 ccgcgccggcgtggtgccggtgcagtaccggcgcgtggcgtgcgcgaagcagggcggcat 5574
Query: 413 ccggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| ||| ||||||||||||||||||||||| || |||||||| | ||
Sbjct: 5573 ccggttcaccatcaccggccactcctacttcaacctggtgctcgtcaccaacgtcggcgg 5514
Query: 473 cgccggcgacgtg 485
|||||||||||||
Sbjct: 5513 cgccggcgacgtg 5501
Score = 125 bits (63), Expect = 5e-026
Identities = 78/83 (93%)
Strand = Plus / Minus
Query: 75 ggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctg 134
||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 5909 ggcgcgtgcgggtacggcaacctgtacagcgccgggtacgggacgagcacggcggcgctg 5850
Query: 135 agcacggcgctgttcaacgacgg 157
|||||||||||||||||| ||||
Sbjct: 5849 agcacggcgctgttcaacaacgg 5827
Score = 73.8 bits (37), Expect = 2e-010
Identities = 88/105 (83%)
Strand = Plus / Minus
Query: 583 cgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcgccgtcc 642
||||||| ||| ||||||||||||||||||||||||||||||| | || || || ||
Sbjct: 5403 cgctctccttcagggtcaccgccagcgacggccgcaccgtcacctccgacaacgtcgccc 5344
Query: 643 ccgccggctggcagttcggccagaccttcgagggcggccagttct 687
|| |||||||| ||||||||||||||| |||||||||||||
Sbjct: 5343 cctccggctggtccttcggccagaccttctccggcggccagttct 5299
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 200 bits (101), Expect = 1e-048
Identities = 216/253 (85%), Gaps = 1/253 (0%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgccc-gcccaactacggcctccccagcgacgacggcggctggtg 292
|||||||||||| ||||||| ||||||||||| ||| || |||||| |||||| |||||
Sbjct: 9572940 acggccaccaacctctgccccgcccaactacgcgctcgccggcgacgccggcgggtggtg 9572999
Query: 293 caacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagta 352
|||||||||||| ||||||||||||||||| |||||||| ||| | | |||||||||
Sbjct: 9573000 caacccgccgcggccgcacttcgacatggcggagccggcgttcaccaggatcgcgcaggc 9573059
Query: 353 ccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcat 412
|||||||||| | ||||| || || | || | ||| |||||| |||| ||||||||||
Sbjct: 9573060 ccgcgccggcgtggtgccggtgcagtaccggcgcgtggcgtgcgcgaagcagggcggcat 9573119
Query: 413 ccggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| ||| ||||||||||||||||||||||| || |||||||| | ||
Sbjct: 9573120 ccggttcaccatcaccggccactcctacttcaacctggtgctcgtcaccaacgtcggcgg 9573179
Query: 473 cgccggcgacgtg 485
|||||||||||||
Sbjct: 9573180 cgccggcgacgtg 9573192
Score = 125 bits (63), Expect = 5e-026
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 75 ggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctg 134
||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 9572784 ggcgcgtgcgggtacggcaacctgtacagcgccgggtacgggacgagcacggcggcgctg 9572843
Query: 135 agcacggcgctgttcaacgacgg 157
|||||||||||||||||| ||||
Sbjct: 9572844 agcacggcgctgttcaacaacgg 9572866
Score = 119 bits (60), Expect = 3e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||||||||| |||||||||||| |||||||| || | |||||||| ||| | |||||||
Sbjct: 8244165 caggcggcgcatgcgggtacggcgacctgtacggcgccgggtacgggacgcggacggcgg 8244106
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcgg 169
|||||||||||||||||||||||| ||||||| |||||||
Sbjct: 8244105 cgctgagcacggcgctgttcaacggcggcgcgtcgtgcgg 8244066
Score = 99.6 bits (50), Expect = 3e-018
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 223 ccatcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacg 282
|||||||||| ||||| |||||||||||||| || ||||||| ||| || |||||| ||
Sbjct: 8244006 ccatcaccgtgacggcgaccaacttctgccctccaaactacgccctgtccggcgacgccg 8243947
Query: 283 gcggctggtgcaacccgccgcgcccgcacttcgacatg 320
|||| ||||||||||||||||||| ||||||||||||
Sbjct: 8243946 gcgggtggtgcaacccgccgcgccgccacttcgacatg 8243909
Score = 73.8 bits (37), Expect = 2e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 583 cgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcgccgtcc 642
||||||| ||| ||||||||||||||||||||||||||||||| | || || || ||
Sbjct: 9573290 cgctctccttcagggtcaccgccagcgacggccgcaccgtcacctccgacaacgtcgccc 9573349
Query: 643 ccgccggctggcagttcggccagaccttcgagggcggccagttct 687
|| |||||||| ||||||||||||||| |||||||||||||
Sbjct: 9573350 cctccggctggtccttcggccagaccttctccggcggccagttct 9573394
Score = 63.9 bits (32), Expect = 2e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 229 ccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggct 288
|||| ||||| ||||||| ||||||||| |||||| || || |||||| |||||| |
Sbjct: 8249716 ccgtgacggcgaccaactactgcccgccaaactacagcgagtccggcgacgccggcgggt 8249657
Query: 289 ggtgcaacccgccgcgcccgcacttcgacatg 320
|||||||||||||||| | ||||||||||||
Sbjct: 8249656 ggtgcaacccgccgcggcgccacttcgacatg 8249625
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 405 ggcggcatccggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaac 464
||||||||||||||| || | ||||||||| ||||||| | |||||||||||||| |||
Sbjct: 8243824 ggcggcatccggttcgccgtgaacgggcacagctacttcgagctggtgctggtgacgaac 8243765
Query: 465 gt 466
||
Sbjct: 8243764 gt 8243763
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 533 ccggaactggggccagaactggcagagcaactcgtacct 571
|||||||||||| ||||||||||||||||| |||||||
Sbjct: 8249411 ccggaactggggggagaactggcagagcaacgcgtacct 8249373
Score = 54.0 bits (27), Expect = 2e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 537 aactggggccagaactggcagagcaactcgtacctggacaggcaggcgctctcgttccag 596
||||||||| |||||||||||||||| || ||| ||| |||||||||| ||||||| |
Sbjct: 8243692 aactggggcgcgaactggcagagcaacgcgcgcctcgacgggcaggcgctgtcgttccgg 8243633
Query: 597 gtc 599
|||
Sbjct: 8243632 gtc 8243630
>gb|D40432.1|D40432 RICS2408A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 324
Score = 198 bits (100), Expect = 4e-048
Identities = 139/152 (91%)
Strand = Plus / Plus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
||||| || |||||||||||||| ||||||||||| | |||||||||||||||||||| |
Sbjct: 171 gggtatggaaacctgtacagcaccgggtacggcaccaacacggcggcgctgagcacggtg 230
Query: 144 ctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgcgacaacgacggg 203
||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct: 231 ctgttcaacgacggcgcggcgtgcgggtcgtgctacgatttgcggtgcgacaacgatggg 290
Query: 204 cggtggtgcctgccgggcaccatcaccgtcac 235
| ||||||||||||||||| | ||||||||||
Sbjct: 291 cagtggtgcctgccgggcagcgtcaccgtcac 322
>gb|D41419.1|D41419 RICS3911A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 383
Score = 198 bits (100), Expect = 4e-048
Identities = 129/139 (92%)
Strand = Plus / Plus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
||||| || |||||||||||||| ||||||||||| | |||||||||||||||||||| |
Sbjct: 233 gggtatgggaacctgtacagcaccgggtacggcaccaacacggcggcgctgagcacggtg 292
Query: 144 ctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgcgacaacgacggg 203
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 293 ctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtgcgacaacgatggg 352
Query: 204 cggtggtgcctgccgggca 222
| ||||||||| |||||||
Sbjct: 353 cagtggtgcctnccgggca 371
>gb|AU078738.1|AU078738 AU078738 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4917_8Z, mRNA sequence
Length = 637
Score = 194 bits (98), Expect = 7e-047
Identities = 146/162 (90%)
Strand = Plus / Plus
Query: 528 atgtcccggaactggggccagaactggcagagcaactcgtacctggacaggcaggcgctc 587
|||||||| ||||||||||||||||||||||||||||| ||||| ||| | ||| |||
Sbjct: 1 atgtcccgcaactggggccagaactggcagagcaactcctacctcgacggccagagcctc 60
Query: 588 tcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcgccgtccccgcc 647
|| ||||||||| ||| |||||||||||||||||||||||||||| || ||| || |||
Sbjct: 61 tccttccaggtcgccgtcagcgacggccgcaccgtcaccagcaacaacgtcgtgccggcc 120
Query: 648 ggctggcagttcggccagaccttcgagggcggccagttctga 689
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggctggcagttcggccagaccttcgagggcggccagttctga 162
>dbj|AK107698.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-C08, full
insert sequence
Length = 1044
Score = 194 bits (98), Expect = 7e-047
Identities = 218/258 (84%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| |||||||||||||| || ||||||| ||||| ||||||| |||||||||||||
Sbjct: 323 acggcgaccaacttctgccccccgaactacgcgctcccgagcgacggcggcggctggtgc 382
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||| ||||| | |||||||||| | ||||||||||| |||||||||||||||| | ||
Sbjct: 383 aacccaccgcggcggcacttcgacctcgccgagccggcgttcctccgcatcgcgcggcac 442
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
|||||| ||||| || ||| | ||| | | ||| |||||| | |||||||||| ||
Sbjct: 443 gccgccgggatcgtcccggtctccttccgccgcgtggcgtgcgccaggaagggcggcgtc 502
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
|||||||| ||||||| ||| ||||||||||||||||||| || |||||||| | |||
Sbjct: 503 aggttcaccgtcaacggccacgcctacttcaacctggtgctcgtcaccaacgtcggcggc 562
Query: 474 gccggcgacgtgcgctcc 491
||||||||||||||||||
Sbjct: 563 gccggcgacgtgcgctcc 580
Score = 141 bits (71), Expect = 8e-031
Identities = 146/171 (85%)
Strand = Plus / Plus
Query: 517 ggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggaca 576
|||||||||| ||||| || |||||||| |||||||||||||||||| ||||||| |||
Sbjct: 624 ggtggcagccgatgtcgcgcaactgggggcagaactggcagagcaacgcgtacctcgacg 683
Query: 577 ggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcg 636
| |||||||||| |||| ||||||||| ||||||||||| || ||||| || || ||
Sbjct: 684 gcaaggcgctctccttccgcgtcaccgccggcgacggccgctccctcacctgcgccgacg 743
Query: 637 ccgtccccgccggctggcagttcggccagaccttcgagggcggccagttct 687
| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 744 tggcgcccgccggctggcagttcggccagaccttcgagggcaggcagttct 794
Score = 123 bits (62), Expect = 2e-025
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 75 ggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctg 134
||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 155 ggcgcgtgcgggtacgggaacctgtacagccaggggtacggcacgagcacggcggcgctg 214
Query: 135 agcacggcgctgttcaac 152
||||||||||||||||||
Sbjct: 215 agcacggcgctgttcaac 232
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 194 bits (98), Expect = 7e-047
Identities = 218/258 (84%)
Strand = Plus / Minus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| |||||||||||||| || ||||||| ||||| ||||||| |||||||||||||
Sbjct: 3786887 acggcgaccaacttctgccccccgaactacgcgctcccgagcgacggcggcggctggtgc 3786828
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||| ||||| | |||||||||| | ||||||||||| |||||||||||||||| | ||
Sbjct: 3786827 aacccaccgcggcggcacttcgacctcgccgagccggcgttcctccgcatcgcgcggcac 3786768
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
|||||| ||||| || ||| | ||| | | ||| |||||| | |||||||||| ||
Sbjct: 3786767 gccgccgggatcgtcccggtctccttccgccgcgtggcgtgcgccaggaagggcggcgtc 3786708
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
|||||||| ||||||| ||| ||||||||||||||||||| || |||||||| | |||
Sbjct: 3786707 aggttcaccgtcaacggccacgcctacttcaacctggtgctcgtcaccaacgtcggcggc 3786648
Query: 474 gccggcgacgtgcgctcc 491
||||||||||||||||||
Sbjct: 3786647 gccggcgacgtgcgctcc 3786630
Score = 141 bits (71), Expect = 8e-031
Identities = 146/171 (85%)
Strand = Plus / Minus
Query: 517 ggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggaca 576
|||||||||| ||||| || |||||||| |||||||||||||||||| ||||||| |||
Sbjct: 3786586 ggtggcagccgatgtcgcgcaactgggggcagaactggcagagcaacgcgtacctcgacg 3786527
Query: 577 ggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcg 636
| |||||||||| |||| ||||||||| ||||||||||| || ||||| || || ||
Sbjct: 3786526 gcaaggcgctctccttccgcgtcaccgccggcgacggccgctccctcacctgcgccgacg 3786467
Query: 637 ccgtccccgccggctggcagttcggccagaccttcgagggcggccagttct 687
| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 3786466 tggcgcccgccggctggcagttcggccagaccttcgagggcaggcagttct 3786416
Score = 125 bits (63), Expect = 5e-026
Identities = 78/83 (93%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 3787060 caggtggcgcgtgcgggtacgggaacctgtacagccaggggtacggcacgagcacggcgg 3787001
Query: 130 cgctgagcacggcgctgttcaac 152
|||||||||||||||||||||||
Sbjct: 3787000 cgctgagcacggcgctgttcaac 3786978
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14,
complete sequence
Length = 132560
Score = 194 bits (98), Expect = 7e-047
Identities = 218/258 (84%)
Strand = Plus / Minus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| |||||||||||||| || ||||||| ||||| ||||||| |||||||||||||
Sbjct: 102309 acggcgaccaacttctgccccccgaactacgcgctcccgagcgacggcggcggctggtgc 102250
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||| ||||| | |||||||||| | ||||||||||| |||||||||||||||| | ||
Sbjct: 102249 aacccaccgcggcggcacttcgacctcgccgagccggcgttcctccgcatcgcgcggcac 102190
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
|||||| ||||| || ||| | ||| | | ||| |||||| | |||||||||| ||
Sbjct: 102189 gccgccgggatcgtcccggtctccttccgccgcgtggcgtgcgccaggaagggcggcgtc 102130
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
|||||||| ||||||| ||| ||||||||||||||||||| || |||||||| | |||
Sbjct: 102129 aggttcaccgtcaacggccacgcctacttcaacctggtgctcgtcaccaacgtcggcggc 102070
Query: 474 gccggcgacgtgcgctcc 491
||||||||||||||||||
Sbjct: 102069 gccggcgacgtgcgctcc 102052
Score = 141 bits (71), Expect = 8e-031
Identities = 146/171 (85%)
Strand = Plus / Minus
Query: 517 ggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggaca 576
|||||||||| ||||| || |||||||| |||||||||||||||||| ||||||| |||
Sbjct: 102008 ggtggcagccgatgtcgcgcaactgggggcagaactggcagagcaacgcgtacctcgacg 101949
Query: 577 ggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcg 636
| |||||||||| |||| ||||||||| ||||||||||| || ||||| || || ||
Sbjct: 101948 gcaaggcgctctccttccgcgtcaccgccggcgacggccgctccctcacctgcgccgacg 101889
Query: 637 ccgtccccgccggctggcagttcggccagaccttcgagggcggccagttct 687
| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 101888 tggcgcccgccggctggcagttcggccagaccttcgagggcaggcagttct 101838
Score = 125 bits (63), Expect = 5e-026
Identities = 78/83 (93%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 102482 caggtggcgcgtgcgggtacgggaacctgtacagccaggggtacggcacgagcacggcgg 102423
Query: 130 cgctgagcacggcgctgttcaac 152
|||||||||||||||||||||||
Sbjct: 102422 cgctgagcacggcgctgttcaac 102400
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 194 bits (98), Expect = 7e-047
Identities = 218/258 (84%)
Strand = Plus / Minus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| |||||||||||||| || ||||||| ||||| ||||||| |||||||||||||
Sbjct: 12441390 acggcgaccaacttctgccccccgaactacgcgctcccgagcgacggcggcggctggtgc 12441331
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||| ||||| | |||||||||| | ||||||||||| |||||||||||||||| | ||
Sbjct: 12441330 aacccaccgcggcggcacttcgacctcgccgagccggcgttcctccgcatcgcgcggcac 12441271
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
|||||| ||||| || ||| | ||| | | ||| |||||| | |||||||||| ||
Sbjct: 12441270 gccgccgggatcgtcccggtctccttccgccgcgtggcgtgcgccaggaagggcggcgtc 12441211
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
|||||||| ||||||| ||| ||||||||||||||||||| || |||||||| | |||
Sbjct: 12441210 aggttcaccgtcaacggccacgcctacttcaacctggtgctcgtcaccaacgtcggcggc 12441151
Query: 474 gccggcgacgtgcgctcc 491
||||||||||||||||||
Sbjct: 12441150 gccggcgacgtgcgctcc 12441133
Score = 149 bits (75), Expect = 3e-033
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 67 cgacaggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacgg 126
||||||||||||| ||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct: 2980902 cgacaggcggcgcgtgcgggtacggcaacctgtactcgacggggtacgggacgaacacgg 2980961
Query: 127 cggcgctgagcacggcgctgttcaacgacggcgcggcgtgcgg 169
||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2980962 cggcgctgagctcggcgctgttcaacgacggcgcggcgtgcgg 2981004
Score = 141 bits (71), Expect = 8e-031
Identities = 146/171 (85%)
Strand = Plus / Minus
Query: 517 ggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggaca 576
|||||||||| ||||| || |||||||| |||||||||||||||||| ||||||| |||
Sbjct: 12441089 ggtggcagccgatgtcgcgcaactgggggcagaactggcagagcaacgcgtacctcgacg 12441030
Query: 577 ggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcg 636
| |||||||||| |||| ||||||||| ||||||||||| || ||||| || || ||
Sbjct: 12441029 gcaaggcgctctccttccgcgtcaccgccggcgacggccgctccctcacctgcgccgacg 12440970
Query: 637 ccgtccccgccggctggcagttcggccagaccttcgagggcggccagttct 687
| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 12440969 tggcgcccgccggctggcagttcggccagaccttcgagggcaggcagttct 12440919
Score = 125 bits (63), Expect = 5e-026
Identities = 123/143 (86%)
Strand = Plus / Minus
Query: 232 tcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggt 291
|||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||
Sbjct: 34297313 tcaccgccaccaacttctgcccgcccaactacgccctcccctccgacaacggcggctggt 34297254
Query: 292 gcaacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagt 351
||||||| || ||||| ||||||||| | ||| ||| ||||||| |||||| |||
Sbjct: 34297253 gcaaccctcctcgcccccacttcgacctcgccatgcccatgttcctccacatcgccgagt 34297194
Query: 352 accgcgccggcatcgtgcccgtc 374
|||||||||||||||| ||||||
Sbjct: 34297193 accgcgccggcatcgtccccgtc 34297171
Score = 125 bits (63), Expect = 5e-026
Identities = 78/83 (93%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 12441563 caggtggcgcgtgcgggtacgggaacctgtacagccaggggtacggcacgagcacggcgg 12441504
Query: 130 cgctgagcacggcgctgttcaac 152
|||||||||||||||||||||||
Sbjct: 12441503 cgctgagcacggcgctgttcaac 12441481
Score = 123 bits (62), Expect = 2e-025
Identities = 86/94 (91%)
Strand = Plus / Minus
Query: 240 accaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccg 299
|||||| | |||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 2988711 accaacctgtgcccgcccaactacgccctctccagcaacgacggcggctggtgcaacccg 2988652
Query: 300 ccgcgcccgcacttcgacatggccgagccggcct 333
|| ||| |||||||||||||||||||||| ||||
Sbjct: 2988651 cctcgcacgcacttcgacatggccgagcccgcct 2988618
Score = 119 bits (60), Expect = 3e-024
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggcg 474
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 14728477 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgagcaacgtgggcggcg 14728536
Query: 475 ccggcgacgtgc 486
||||||||||||
Sbjct: 14728537 ccggcgacgtgc 14728548
Score = 109 bits (55), Expect = 3e-021
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
|||||||| ||||||||| | |||||||||| |||| |||||||||||||||| |||||
Sbjct: 2988876 gggtacgggaacctgtactggtcggggtacgggacgaacacggcggcgctgagctcggcg 2988817
Query: 144 ctgttcaacgacggcgcggcgtgcggg 170
|||||||||||||||||| ||||||||
Sbjct: 2988816 ctgttcaacgacggcgcgtcgtgcggg 2988790
Score = 107 bits (54), Expect = 1e-020
Identities = 90/102 (88%)
Strand = Plus / Minus
Query: 232 tcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggt 291
|||||||||||||| | ||||||||||||| | ||||||||| || |||||||||||
Sbjct: 2985950 tcacggccaccaacctgtgcccgcccaactgggctctccccagcaacagcggcggctggt 2985891
Query: 292 gcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
|||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 2985890 gcaacccgccccgccctcacttcgacatggccgagcccgcct 2985849
Score = 95.6 bits (48), Expect = 5e-017
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||| |||||||||| |||||||||| |||| ||||||||
Sbjct: 2986121 caggtggcgcgtgcgggtacgggaacctgtacacggcggggtacgggacgaacacggcgg 2986062
Query: 130 cgctgagcacggcgctgttcaacgacgg 157
|||||||| ||| |||||||||||||||
Sbjct: 2986061 cgctgagctcggtgctgttcaacgacgg 2986034
Score = 89.7 bits (45), Expect = 3e-015
Identities = 81/93 (87%)
Strand = Plus / Plus
Query: 228 accgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggc 287
||||| ||||| |||||| | ||||||||||||| | ||||| ||||||| ||||||
Sbjct: 17740937 accgtgacggcgaccaacctgtgcccgcccaactgggcgctcccgagcgacggcggcggg 17740996
Query: 288 tggtgcaacccgccgcgcccgcacttcgacatg 320
||||||||||||||||| |||||||||||||||
Sbjct: 17740997 tggtgcaacccgccgcggccgcacttcgacatg 17741029
Score = 85.7 bits (43), Expect = 4e-014
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||||||||||||||||||| | |||||||||| | || ||||||
Sbjct: 17740772 ggcggcgcgtgcgggtacggcaacctgtacgaccaggggtacggcgtggacaacgcggcg 17740831
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
|||||| |||||||||||||||||||||| ||||||||
Sbjct: 17740832 ctgagccaggcgctgttcaacgacggcgcgtcgtgcggg 17740870
Score = 83.8 bits (42), Expect = 2e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 511 gcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacc 570
|||| |||||| ||||||||| |||||||||||||||||||||||| |||||| ||
Sbjct: 34295668 gcaccgggtggatgcccatgtcgcggaactggggccagaactggcagtccaactccgtcc 34295609
Query: 571 tggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcacc 620
| | | | |||||||||||||||| ||||||| ||||||| ||||||||
Sbjct: 34295608 tcgtcggccaggcgctctcgttccgcgtcaccggcagcgaccgccgcacc 34295559
Score = 83.8 bits (42), Expect = 2e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 277 acgacggcggctggtgcaacccgccgcgcccgcacttcgacatggc 322
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2981118 acgacggcggctggtgcaacccgccgcgccagcacttcgacatggc 2981163
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||||||| || | |||||| ||||| ||| |||||| ||||| |||||||||||||
Sbjct: 14727927 acggccaccgacctgtgcccggccaaccacgcgctccccggcgaccgcggcggctggtgc 14727986
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgc 346
|||||||||| || ||||||||| | || |||| |||||||||||||||||
Sbjct: 14727987 aacccgccgctccaccacttcgacctctcccagcccgccttcctccgcatcgc 14728039
Score = 75.8 bits (38), Expect = 4e-011
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 81 tgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacg 140
||||||||||| ||||||||| | ||||||||||| | || || ||||||||||||
Sbjct: 3008569 tgcgggtacgggaacctgtacgaccaggggtacggcatcaacaacgcagcgctgagcacg 3008628
Query: 141 gcgctgttcaacgacggcgcggcgtgcggg 170
|||||||||||||||||||| ||||||||
Sbjct: 3008629 ccgctgttcaacgacggcgcgtcgtgcggg 3008658
Score = 75.8 bits (38), Expect = 4e-011
Identities = 91/109 (83%), Gaps = 6/109 (5%)
Strand = Plus / Plus
Query: 225 atcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggc 284
|||||||| |||| |||||||||||||||||||||||| | |||||| | |||||
Sbjct: 3003512 atcaccgtgacgggcaccaacttctgcccgcccaactatgacctccc------ctacggc 3003565
Query: 285 ggctggtgcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
|||||||||||| || | ||||| |||||||||||| || |||| ||||
Sbjct: 3003566 ggctggtgcaacacgacccgccctcacttcgacatgtcccagcccgcct 3003614
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||||||||| |||||||||||| ||||||||| || || ||||||
Sbjct: 34297485 ggcggggcgtgcgggtacgggaacctgtacagccaggggtacggggtgaacaacgcggcg 34297426
Query: 132 ctgagcacggcgctgttcaac 152
|||||||||||||||||||||
Sbjct: 34297425 ctgagcacggcgctgttcaac 34297405
Score = 73.8 bits (37), Expect = 2e-010
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||||||||||||| | | | ||||||| | || || |
Sbjct: 3018966 caggtggcgcgtgcgggtacggcaacctgtacgaccagcgctacggcatcaacaacgcag 3019025
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 3019026 cgctgagcacgccgctgttcaacgacggcgcgtcgtgcggg 3019066
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 642 cccgccggctggcagttcggccagaccttcgagggc 677
|||||||| ||||| |||||||||||||||||||||
Sbjct: 34295537 cccgccggatggcacttcggccagaccttcgagggc 34295502
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 517 ggtggcagcccatgtcccggaactggggccagaactggcagagc 560
|||||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 14728588 ggtggcaggccatggcgaggaactggggccagaactggcagagc 14728631
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggc 469
||||||||||||||||| | ||||||| | |||||||||||||||||| ||||
Sbjct: 3009011 ggttcaccatcaacgggttcaactacttcgagctggtgctggtgaccaacatggc 3009065
Score = 52.0 bits (26), Expect = 6e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgg 468
||||||||||||||||| || ||||||| | ||||||||| | ||||||||||
Sbjct: 2981344 ggttcaccatcaacgggaacagctacttcgagctggtgctgatcaccaacgtgg 2981397
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 126 gcggcgctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
||||||||||||||| | ||||||||| |||| ||| ||||||||
Sbjct: 3003404 gcggcgctgagcacgccactgttcaacaacggggcgtcgtgcggg 3003448
Score = 48.1 bits (24), Expect = 0.009
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||| ||| |||| | ||||||||||||| ||||||||
Sbjct: 14727739 caggtggcgcgtgcgggtacgggaacacgtacgggcaggggtacggcacggacacggcgg 14727798
Query: 130 cgctgagc 137
||||||||
Sbjct: 14727799 cgctgagc 14727806
Score = 46.1 bits (23), Expect = 0.037
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggc 469
|||||| |||||||||| | ||||||| | |||||||||||||||||| ||||
Sbjct: 3019393 ggttcatcatcaacgggttcaactacttcgagctggtgctggtgaccaacatggc 3019447
Score = 46.1 bits (23), Expect = 0.037
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 225 atcaccgtcacggccaccaacttctgcccgcccaactacggcctccc 271
|||||||| |||| |||||||| ||| ||||||||||| | ||||||
Sbjct: 3008722 atcaccgtgacgggcaccaactactgtccgcccaactatgacctccc 3008768
Score = 44.1 bits (22), Expect = 0.15
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 280 acggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
||||||||||||||||| || | ||||| ||||||||||| || |||| ||||
Sbjct: 3019152 acggcggctggtgcaacgcgacccgcccttacttcgacatgtcccagcctgcct 3019205
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 194 bits (98), Expect = 7e-047
Identities = 218/258 (84%)
Strand = Plus / Minus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| |||||||||||||| || ||||||| ||||| ||||||| |||||||||||||
Sbjct: 12444627 acggcgaccaacttctgccccccgaactacgcgctcccgagcgacggcggcggctggtgc 12444568
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||| ||||| | |||||||||| | ||||||||||| |||||||||||||||| | ||
Sbjct: 12444567 aacccaccgcggcggcacttcgacctcgccgagccggcgttcctccgcatcgcgcggcac 12444508
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
|||||| ||||| || ||| | ||| | | ||| |||||| | |||||||||| ||
Sbjct: 12444507 gccgccgggatcgtcccggtctccttccgccgcgtggcgtgcgccaggaagggcggcgtc 12444448
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
|||||||| ||||||| ||| ||||||||||||||||||| || |||||||| | |||
Sbjct: 12444447 aggttcaccgtcaacggccacgcctacttcaacctggtgctcgtcaccaacgtcggcggc 12444388
Query: 474 gccggcgacgtgcgctcc 491
||||||||||||||||||
Sbjct: 12444387 gccggcgacgtgcgctcc 12444370
Score = 149 bits (75), Expect = 3e-033
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 67 cgacaggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacgg 126
||||||||||||| ||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct: 2980791 cgacaggcggcgcgtgcgggtacggcaacctgtactcgacggggtacgggacgaacacgg 2980850
Query: 127 cggcgctgagcacggcgctgttcaacgacggcgcggcgtgcgg 169
||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2980851 cggcgctgagctcggcgctgttcaacgacggcgcggcgtgcgg 2980893
Score = 141 bits (71), Expect = 8e-031
Identities = 146/171 (85%)
Strand = Plus / Minus
Query: 517 ggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggaca 576
|||||||||| ||||| || |||||||| |||||||||||||||||| ||||||| |||
Sbjct: 12444326 ggtggcagccgatgtcgcgcaactgggggcagaactggcagagcaacgcgtacctcgacg 12444267
Query: 577 ggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcg 636
| |||||||||| |||| ||||||||| ||||||||||| || ||||| || || ||
Sbjct: 12444266 gcaaggcgctctccttccgcgtcaccgccggcgacggccgctccctcacctgcgccgacg 12444207
Query: 637 ccgtccccgccggctggcagttcggccagaccttcgagggcggccagttct 687
| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 12444206 tggcgcccgccggctggcagttcggccagaccttcgagggcaggcagttct 12444156
Score = 125 bits (63), Expect = 5e-026
Identities = 123/143 (86%)
Strand = Plus / Minus
Query: 232 tcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggt 291
|||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||
Sbjct: 34206841 tcaccgccaccaacttctgcccgcccaactacgccctcccctccgacaacggcggctggt 34206782
Query: 292 gcaacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagt 351
||||||| || ||||| ||||||||| | ||| ||| ||||||| |||||| |||
Sbjct: 34206781 gcaaccctcctcgcccccacttcgacctcgccatgcccatgttcctccacatcgccgagt 34206722
Query: 352 accgcgccggcatcgtgcccgtc 374
|||||||||||||||| ||||||
Sbjct: 34206721 accgcgccggcatcgtccccgtc 34206699
Score = 125 bits (63), Expect = 5e-026
Identities = 78/83 (93%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 12444800 caggtggcgcgtgcgggtacgggaacctgtacagccaggggtacggcacgagcacggcgg 12444741
Query: 130 cgctgagcacggcgctgttcaac 152
|||||||||||||||||||||||
Sbjct: 12444740 cgctgagcacggcgctgttcaac 12444718
Score = 123 bits (62), Expect = 2e-025
Identities = 86/94 (91%)
Strand = Plus / Minus
Query: 240 accaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccg 299
|||||| | |||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 2988621 accaacctgtgcccgcccaactacgccctctccagcaacgacggcggctggtgcaacccg 2988562
Query: 300 ccgcgcccgcacttcgacatggccgagccggcct 333
|| ||| |||||||||||||||||||||| ||||
Sbjct: 2988561 cctcgcacgcacttcgacatggccgagcccgcct 2988528
Score = 119 bits (60), Expect = 3e-024
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggcg 474
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 14733943 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgagcaacgtgggcggcg 14734002
Query: 475 ccggcgacgtgc 486
||||||||||||
Sbjct: 14734003 ccggcgacgtgc 14734014
Score = 109 bits (55), Expect = 3e-021
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
|||||||| ||||||||| | |||||||||| |||| |||||||||||||||| |||||
Sbjct: 2988786 gggtacgggaacctgtactggtcggggtacgggacgaacacggcggcgctgagctcggcg 2988727
Query: 144 ctgttcaacgacggcgcggcgtgcggg 170
|||||||||||||||||| ||||||||
Sbjct: 2988726 ctgttcaacgacggcgcgtcgtgcggg 2988700
Score = 107 bits (54), Expect = 1e-020
Identities = 90/102 (88%)
Strand = Plus / Minus
Query: 232 tcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggt 291
|||||||||||||| | ||||||||||||| | ||||||||| || |||||||||||
Sbjct: 2985860 tcacggccaccaacctgtgcccgcccaactgggctctccccagcaacagcggcggctggt 2985801
Query: 292 gcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
|||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 2985800 gcaacccgccccgccctcacttcgacatggccgagcccgcct 2985759
Score = 95.6 bits (48), Expect = 5e-017
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||| |||||||||| |||||||||| |||| ||||||||
Sbjct: 2986031 caggtggcgcgtgcgggtacgggaacctgtacacggcggggtacgggacgaacacggcgg 2985972
Query: 130 cgctgagcacggcgctgttcaacgacgg 157
|||||||| ||| |||||||||||||||
Sbjct: 2985971 cgctgagctcggtgctgttcaacgacgg 2985944
Score = 89.7 bits (45), Expect = 3e-015
Identities = 81/93 (87%)
Strand = Plus / Plus
Query: 228 accgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggc 287
||||| ||||| |||||| | ||||||||||||| | ||||| ||||||| ||||||
Sbjct: 17747396 accgtgacggcgaccaacctgtgcccgcccaactgggcgctcccgagcgacggcggcggg 17747455
Query: 288 tggtgcaacccgccgcgcccgcacttcgacatg 320
||||||||||||||||| |||||||||||||||
Sbjct: 17747456 tggtgcaacccgccgcggccgcacttcgacatg 17747488
Score = 85.7 bits (43), Expect = 4e-014
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||||||||||||||||||| | |||||||||| | || ||||||
Sbjct: 17747231 ggcggcgcgtgcgggtacggcaacctgtacgaccaggggtacggcgtggacaacgcggcg 17747290
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
|||||| |||||||||||||||||||||| ||||||||
Sbjct: 17747291 ctgagccaggcgctgttcaacgacggcgcgtcgtgcggg 17747329
Score = 83.8 bits (42), Expect = 2e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 511 gcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacc 570
|||| |||||| ||||||||| |||||||||||||||||||||||| |||||| ||
Sbjct: 34205196 gcaccgggtggatgcccatgtcgcggaactggggccagaactggcagtccaactccgtcc 34205137
Query: 571 tggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcacc 620
| | | | |||||||||||||||| ||||||| ||||||| ||||||||
Sbjct: 34205136 tcgtcggccaggcgctctcgttccgcgtcaccggcagcgaccgccgcacc 34205087
Score = 83.8 bits (42), Expect = 2e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 277 acgacggcggctggtgcaacccgccgcgcccgcacttcgacatggc 322
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2981007 acgacggcggctggtgcaacccgccgcgccagcacttcgacatggc 2981052
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||||||| || | |||||| ||||| ||| |||||| ||||| |||||||||||||
Sbjct: 14733393 acggccaccgacctgtgcccggccaaccacgcgctccccggcgaccgcggcggctggtgc 14733452
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgc 346
|||||||||| || ||||||||| | || |||| |||||||||||||||||
Sbjct: 14733453 aacccgccgctccaccacttcgacctctcccagcccgccttcctccgcatcgc 14733505
Score = 75.8 bits (38), Expect = 4e-011
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 81 tgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacg 140
||||||||||| ||||||||| | ||||||||||| | || || ||||||||||||
Sbjct: 3008455 tgcgggtacgggaacctgtacgaccaggggtacggcatcaacaacgcagcgctgagcacg 3008514
Query: 141 gcgctgttcaacgacggcgcggcgtgcggg 170
|||||||||||||||||||| ||||||||
Sbjct: 3008515 ccgctgttcaacgacggcgcgtcgtgcggg 3008544
Score = 75.8 bits (38), Expect = 4e-011
Identities = 91/109 (83%), Gaps = 6/109 (5%)
Strand = Plus / Plus
Query: 225 atcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggc 284
|||||||| |||| |||||||||||||||||||||||| | |||||| | |||||
Sbjct: 3003422 atcaccgtgacgggcaccaacttctgcccgcccaactatgacctccc------ctacggc 3003475
Query: 285 ggctggtgcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
|||||||||||| || | ||||| |||||||||||| || |||| ||||
Sbjct: 3003476 ggctggtgcaacacgacccgccctcacttcgacatgtcccagcccgcct 3003524
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||||||||| |||||||||||| ||||||||| || || ||||||
Sbjct: 34207013 ggcggggcgtgcgggtacgggaacctgtacagccaggggtacggggtgaacaacgcggcg 34206954
Query: 132 ctgagcacggcgctgttcaac 152
|||||||||||||||||||||
Sbjct: 34206953 ctgagcacggcgctgttcaac 34206933
Score = 73.8 bits (37), Expect = 2e-010
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||||||||||||| | | | ||||||| | || || |
Sbjct: 3018851 caggtggcgcgtgcgggtacggcaacctgtacgaccagcgctacggcatcaacaacgcag 3018910
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 3018911 cgctgagcacgccgctgttcaacgacggcgcgtcgtgcggg 3018951
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 642 cccgccggctggcagttcggccagaccttcgagggc 677
|||||||| ||||| |||||||||||||||||||||
Sbjct: 34205065 cccgccggatggcacttcggccagaccttcgagggc 34205030
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 517 ggtggcagcccatgtcccggaactggggccagaactggcagagc 560
|||||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 14734054 ggtggcaggccatggcgaggaactggggccagaactggcagagc 14734097
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggc 469
||||||||||||||||| | ||||||| | |||||||||||||||||| ||||
Sbjct: 3008897 ggttcaccatcaacgggttcaactacttcgagctggtgctggtgaccaacatggc 3008951
Score = 52.0 bits (26), Expect = 6e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgg 468
||||||||||||||||| || ||||||| | ||||||||| | ||||||||||
Sbjct: 2981233 ggttcaccatcaacgggaacagctacttcgagctggtgctgatcaccaacgtgg 2981286
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 126 gcggcgctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
||||||||||||||| | ||||||||| |||| ||| ||||||||
Sbjct: 3003314 gcggcgctgagcacgccactgttcaacaacggggcgtcgtgcggg 3003358
Score = 48.1 bits (24), Expect = 0.009
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||| ||| |||| | ||||||||||||| ||||||||
Sbjct: 14733205 caggtggcgcgtgcgggtacgggaacacgtacgggcaggggtacggcacggacacggcgg 14733264
Query: 130 cgctgagc 137
||||||||
Sbjct: 14733265 cgctgagc 14733272
Score = 46.1 bits (23), Expect = 0.037
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggc 469
|||||| |||||||||| | ||||||| | |||||||||||||||||| ||||
Sbjct: 3019278 ggttcatcatcaacgggttcaactacttcgagctggtgctggtgaccaacatggc 3019332
Score = 46.1 bits (23), Expect = 0.037
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 225 atcaccgtcacggccaccaacttctgcccgcccaactacggcctccc 271
|||||||| |||| |||||||| ||| ||||||||||| | ||||||
Sbjct: 3008608 atcaccgtgacgggcaccaactactgtccgcccaactatgacctccc 3008654
Score = 44.1 bits (22), Expect = 0.15
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 280 acggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
||||||||||||||||| || | ||||| ||||||||||| || |||| ||||
Sbjct: 3019037 acggcggctggtgcaacgcgacccgcccttacttcgacatgtcccagcctgcct 3019090
>gb|D41260.1|D41260 RICS3629A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 431
Score = 184 bits (93), Expect = 6e-044
Identities = 127/139 (91%)
Strand = Plus / Plus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
||||| || |||||||||||||| ||||||||||| | |||||||||||||||||||| |
Sbjct: 233 gggtatgggaacctgtacagcaccgggtacggcaccaacacggcggcgctgagcacggtg 292
Query: 144 ctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgcgacaacgacggg 203
|||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| |||
Sbjct: 293 ctgttcaacgacggcgcggcgtncgggtcgtgctacgagctncggtgcgacaacgatggg 352
Query: 204 cggtggtgcctgccgggca 222
| ||||||||| |||||||
Sbjct: 353 cagtggtgccttccgggca 371
>gb|D24200.1|D24200 RICR1518A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1518_1A, mRNA sequence
Length = 361
Score = 172 bits (87), Expect = 2e-040
Identities = 118/129 (91%)
Strand = Plus / Plus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
||||| || |||||||||||||| ||||||||||| | ||||||| |||||||||||| |
Sbjct: 233 gggtatgggaacctgtacagcaccgggtacggcaccaacacggcgncgctgagcacggtg 292
Query: 144 ctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgcgacaacgacggg 203
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||
Sbjct: 293 ctgttcaacgacggcgcggcgtncgggtcgtgctacgagctgcggtgcgacaacgatggg 352
Query: 204 cggtggtgc 212
| |||||||
Sbjct: 353 cagtggtgc 361
>gb|AACV01006557.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006557, whole
genome shotgun sequence
Length = 7954
Score = 170 bits (86), Expect = 9e-040
Identities = 216/258 (83%), Gaps = 1/258 (0%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| |||||||| ||||| || ||||||| ||||| ||||||| |||||||||| ||
Sbjct: 6414 acggcgaccaacttttgccccccgaactacgcgctcccgagcgacggcggcggctgg-gc 6472
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||| ||||| | |||||||||| | ||||||||||| |||||||||||||||| | ||
Sbjct: 6473 aacccaccgcggcggcacttcgacctcgccgagccggcgttcctccgcatcgcgcggcac 6532
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
|||||| ||||| || ||| | ||| | | ||| |||||| | |||||||||| ||
Sbjct: 6533 gccgccgggatcgtcccggtctccttccgccgcgtggcgtgcgccaggaagggcggcgtc 6592
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
|||||||| ||||||| ||| ||||||||||||||||||| || |||||||| | |||
Sbjct: 6593 aggttcaccgtcaacggccacgcctacttcaacctggtgctcgtcaccaacgtcggcggc 6652
Query: 474 gccggcgacgtgcgctcc 491
||||||||||||||||||
Sbjct: 6653 gccggcgacgtgcgctcc 6670
Score = 141 bits (71), Expect = 8e-031
Identities = 146/171 (85%)
Strand = Plus / Plus
Query: 517 ggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggaca 576
|||||||||| ||||| || |||||||| |||||||||||||||||| ||||||| |||
Sbjct: 6714 ggtggcagccgatgtcgcgcaactgggggcagaactggcagagcaacgcgtacctcgacg 6773
Query: 577 ggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcg 636
| |||||||||| |||| ||||||||| ||||||||||| || ||||| || || ||
Sbjct: 6774 gcaaggcgctctccttccgcgtcaccgccggcgacggccgctccctcacctgcgccgacg 6833
Query: 637 ccgtccccgccggctggcagttcggccagaccttcgagggcggccagttct 687
| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 6834 tggcgcccgccggctggcagttcggccagaccttcgagggcaggcagttct 6884
Score = 99.6 bits (50), Expect = 3e-018
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 95 cctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcgctgttcaac 152
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6265 cctgtacagccaggggtacggcacgagcacggcggcgctgagcacggcgctgttcaac 6322
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 170 bits (86), Expect = 9e-040
Identities = 216/258 (83%), Gaps = 1/258 (0%)
Strand = Plus / Minus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| |||||||| ||||| || ||||||| ||||| ||||||| |||||||||| ||
Sbjct: 12579539 acggcgaccaacttttgccccccgaactacgcgctcccgagcgacggcggcggctgg-gc 12579481
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||| ||||| | |||||||||| | ||||||||||| |||||||||||||||| | ||
Sbjct: 12579480 aacccaccgcggcggcacttcgacctcgccgagccggcgttcctccgcatcgcgcggcac 12579421
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
|||||| ||||| || ||| | ||| | | ||| |||||| | |||||||||| ||
Sbjct: 12579420 gccgccgggatcgtcccggtctccttccgccgcgtggcgtgcgccaggaagggcggcgtc 12579361
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
|||||||| ||||||| ||| ||||||||||||||||||| || |||||||| | |||
Sbjct: 12579360 aggttcaccgtcaacggccacgcctacttcaacctggtgctcgtcaccaacgtcggcggc 12579301
Query: 474 gccggcgacgtgcgctcc 491
||||||||||||||||||
Sbjct: 12579300 gccggcgacgtgcgctcc 12579283
Score = 149 bits (75), Expect = 3e-033
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 67 cgacaggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacgg 126
||||||||||||| ||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct: 2992609 cgacaggcggcgcgtgcgggtacggcaacctgtactcgacggggtacgggacgaacacgg 2992668
Query: 127 cggcgctgagcacggcgctgttcaacgacggcgcggcgtgcgg 169
||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2992669 cggcgctgagctcggcgctgttcaacgacggcgcggcgtgcgg 2992711
Score = 141 bits (71), Expect = 8e-031
Identities = 146/171 (85%)
Strand = Plus / Minus
Query: 517 ggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggaca 576
|||||||||| ||||| || |||||||| |||||||||||||||||| ||||||| |||
Sbjct: 12579239 ggtggcagccgatgtcgcgcaactgggggcagaactggcagagcaacgcgtacctcgacg 12579180
Query: 577 ggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcg 636
| |||||||||| |||| ||||||||| ||||||||||| || ||||| || || ||
Sbjct: 12579179 gcaaggcgctctccttccgcgtcaccgccggcgacggccgctccctcacctgcgccgacg 12579120
Query: 637 ccgtccccgccggctggcagttcggccagaccttcgagggcggccagttct 687
| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 12579119 tggcgcccgccggctggcagttcggccagaccttcgagggcaggcagttct 12579069
Score = 123 bits (62), Expect = 2e-025
Identities = 86/94 (91%)
Strand = Plus / Minus
Query: 240 accaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccg 299
|||||| | |||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 3000418 accaacctgtgcccgcccaactacgccctctccagcaacgacggcggctggtgcaacccg 3000359
Query: 300 ccgcgcccgcacttcgacatggccgagccggcct 333
|| ||| |||||||||||||||||||||| ||||
Sbjct: 3000358 cctcgcacgcacttcgacatggccgagcccgcct 3000325
Score = 109 bits (55), Expect = 3e-021
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
|||||||| ||||||||| | |||||||||| |||| |||||||||||||||| |||||
Sbjct: 3000583 gggtacgggaacctgtactggtcggggtacgggacgaacacggcggcgctgagctcggcg 3000524
Query: 144 ctgttcaacgacggcgcggcgtgcggg 170
|||||||||||||||||| ||||||||
Sbjct: 3000523 ctgttcaacgacggcgcgtcgtgcggg 3000497
Score = 107 bits (54), Expect = 1e-020
Identities = 90/102 (88%)
Strand = Plus / Minus
Query: 232 tcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggt 291
|||||||||||||| | ||||||||||||| | ||||||||| || |||||||||||
Sbjct: 2997657 tcacggccaccaacctgtgcccgcccaactgggctctccccagcaacagcggcggctggt 2997598
Query: 292 gcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
|||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 2997597 gcaacccgccccgccctcacttcgacatggccgagcccgcct 2997556
Score = 99.6 bits (50), Expect = 3e-018
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 95 cctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcgctgttcaac 152
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12579688 cctgtacagccaggggtacggcacgagcacggcggcgctgagcacggcgctgttcaac 12579631
Score = 95.6 bits (48), Expect = 5e-017
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||| |||||||||| |||||||||| |||| ||||||||
Sbjct: 2997828 caggtggcgcgtgcgggtacgggaacctgtacacggcggggtacgggacgaacacggcgg 2997769
Query: 130 cgctgagcacggcgctgttcaacgacgg 157
|||||||| ||| |||||||||||||||
Sbjct: 2997768 cgctgagctcggtgctgttcaacgacgg 2997741
Score = 83.8 bits (42), Expect = 2e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 277 acgacggcggctggtgcaacccgccgcgcccgcacttcgacatggc 322
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2992825 acgacggcggctggtgcaacccgccgcgccagcacttcgacatggc 2992870
Score = 75.8 bits (38), Expect = 4e-011
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 81 tgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacg 140
||||||||||| ||||||||| | ||||||||||| | || || ||||||||||||
Sbjct: 3022249 tgcgggtacgggaacctgtacgaccaggggtacggcatcaacaacgcagcgctgagcacg 3022308
Query: 141 gcgctgttcaacgacggcgcggcgtgcggg 170
|||||||||||||||||||| ||||||||
Sbjct: 3022309 ccgctgttcaacgacggcgcgtcgtgcggg 3022338
Score = 75.8 bits (38), Expect = 4e-011
Identities = 91/109 (83%), Gaps = 6/109 (5%)
Strand = Plus / Plus
Query: 225 atcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggc 284
|||||||| |||| |||||||||||||||||||||||| | |||||| | |||||
Sbjct: 3017159 atcaccgtgacgggcaccaacttctgcccgcccaactatgacctccc------ctacggc 3017212
Query: 285 ggctggtgcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
|||||||||||| || | ||||| |||||||||||| || |||| ||||
Sbjct: 3017213 ggctggtgcaacacgacccgccctcacttcgacatgtcccagcccgcct 3017261
Score = 73.8 bits (37), Expect = 2e-010
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||||||||||||| | | | ||||||| | || || |
Sbjct: 3032115 caggtggcgcgtgcgggtacggcaacctgtacgaccagcgctacggcatcaacaacgcag 3032174
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 3032175 cgctgagcacgccgctgttcaacgacggcgcgtcgtgcggg 3032215
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggc 469
||||||||||||||||| | ||||||| | |||||||||||||||||| ||||
Sbjct: 3022692 ggttcaccatcaacgggttcaactacttcgagctggtgctggtgaccaacatggc 3022746
Score = 52.0 bits (26), Expect = 6e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgg 468
||||||||||||||||| || ||||||| | ||||||||| | ||||||||||
Sbjct: 2993051 ggttcaccatcaacgggaacagctacttcgagctggtgctgatcaccaacgtgg 2993104
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 126 gcggcgctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
||||||||||||||| | ||||||||| |||| ||| ||||||||
Sbjct: 3017051 gcggcgctgagcacgccactgttcaacaacggggcgtcgtgcggg 3017095
Score = 46.1 bits (23), Expect = 0.037
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggc 469
|||||| |||||||||| | ||||||| | |||||||||||||||||| ||||
Sbjct: 3032542 ggttcatcatcaacgggttcaactacttcgagctggtgctggtgaccaacatggc 3032596
Score = 46.1 bits (23), Expect = 0.037
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 225 atcaccgtcacggccaccaacttctgcccgcccaactacggcctccc 271
|||||||| |||| |||||||| ||| ||||||||||| | ||||||
Sbjct: 3022402 atcaccgtgacgggcaccaactactgtccgcccaactatgacctccc 3022448
Score = 44.1 bits (22), Expect = 0.15
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 280 acggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
||||||||||||||||| || | ||||| ||||||||||| || |||| ||||
Sbjct: 3032301 acggcggctggtgcaacgcgacccgcccttacttcgacatgtcccagcctgcct 3032354
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 170 bits (86), Expect = 9e-040
Identities = 216/258 (83%), Gaps = 1/258 (0%)
Strand = Plus / Minus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| |||||||| ||||| || ||||||| ||||| ||||||| |||||||||| ||
Sbjct: 12771901 acggcgaccaacttttgccccccgaactacgcgctcccgagcgacggcggcggctgg-gc 12771843
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagtac 353
||||| ||||| | |||||||||| | ||||||||||| |||||||||||||||| | ||
Sbjct: 12771842 aacccaccgcggcggcacttcgacctcgccgagccggcgttcctccgcatcgcgcggcac 12771783
Query: 354 cgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtgaagaagggcggcatc 413
|||||| ||||| || ||| | ||| | | ||| |||||| | |||||||||| ||
Sbjct: 12771782 gccgccgggatcgtcccggtctccttccgccgcgtggcgtgcgccaggaagggcggcgtc 12771723
Query: 414 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggc 473
|||||||| ||||||| ||| ||||||||||||||||||| || |||||||| | |||
Sbjct: 12771722 aggttcaccgtcaacggccacgcctacttcaacctggtgctcgtcaccaacgtcggcggc 12771663
Query: 474 gccggcgacgtgcgctcc 491
||||||||||||||||||
Sbjct: 12771662 gccggcgacgtgcgctcc 12771645
Score = 149 bits (75), Expect = 3e-033
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 67 cgacaggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacgg 126
||||||||||||| ||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct: 3184971 cgacaggcggcgcgtgcgggtacggcaacctgtactcgacggggtacgggacgaacacgg 3185030
Query: 127 cggcgctgagcacggcgctgttcaacgacggcgcggcgtgcgg 169
||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3185031 cggcgctgagctcggcgctgttcaacgacggcgcggcgtgcgg 3185073
Score = 141 bits (71), Expect = 8e-031
Identities = 146/171 (85%)
Strand = Plus / Minus
Query: 517 ggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggaca 576
|||||||||| ||||| || |||||||| |||||||||||||||||| ||||||| |||
Sbjct: 12771601 ggtggcagccgatgtcgcgcaactgggggcagaactggcagagcaacgcgtacctcgacg 12771542
Query: 577 ggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggcg 636
| |||||||||| |||| ||||||||| ||||||||||| || ||||| || || ||
Sbjct: 12771541 gcaaggcgctctccttccgcgtcaccgccggcgacggccgctccctcacctgcgccgacg 12771482
Query: 637 ccgtccccgccggctggcagttcggccagaccttcgagggcggccagttct 687
| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 12771481 tggcgcccgccggctggcagttcggccagaccttcgagggcaggcagttct 12771431
Score = 125 bits (63), Expect = 5e-026
Identities = 123/143 (86%)
Strand = Plus / Minus
Query: 232 tcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggt 291
|||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||
Sbjct: 35158827 tcaccgccaccaacttctgcccgcccaactacgccctcccctccgacaacggcggctggt 35158768
Query: 292 gcaacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgcgcagt 351
||||||| || ||||| ||||||||| | ||| ||| ||||||| |||||| |||
Sbjct: 35158767 gcaaccctcctcgcccccacttcgacctcgccatgcccatgttcctccacatcgccgagt 35158708
Query: 352 accgcgccggcatcgtgcccgtc 374
|||||||||||||||| ||||||
Sbjct: 35158707 accgcgccggcatcgtccccgtc 35158685
Score = 123 bits (62), Expect = 2e-025
Identities = 86/94 (91%)
Strand = Plus / Minus
Query: 240 accaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccg 299
|||||| | |||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 3192780 accaacctgtgcccgcccaactacgccctctccagcaacgacggcggctggtgcaacccg 3192721
Query: 300 ccgcgcccgcacttcgacatggccgagccggcct 333
|| ||| |||||||||||||||||||||| ||||
Sbjct: 3192720 cctcgcacgcacttcgacatggccgagcccgcct 3192687
Score = 119 bits (60), Expect = 3e-024
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggcg 474
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 15400866 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgagcaacgtgggcggcg 15400925
Query: 475 ccggcgacgtgc 486
||||||||||||
Sbjct: 15400926 ccggcgacgtgc 15400937
Score = 111 bits (56), Expect = 8e-022
Identities = 89/100 (89%)
Strand = Plus / Plus
Query: 232 tcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggt 291
||||||| |||||| |||||||||| ||||||| ||||||| ||||| |||||| ||||
Sbjct: 37505488 tcacggcgaccaacctctgcccgccgaactacgcgctccccaacgacgccggcgggtggt 37505547
Query: 292 gcaacccgccgcgcccgcacttcgacatggccgagccggc 331
||||||||||||| | |||||||||||||||||| |||||
Sbjct: 37505548 gcaacccgccgcggcagcacttcgacatggccgaaccggc 37505587
Score = 109 bits (55), Expect = 3e-021
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
|||||||| ||||||||| | |||||||||| |||| |||||||||||||||| |||||
Sbjct: 3192945 gggtacgggaacctgtactggtcggggtacgggacgaacacggcggcgctgagctcggcg 3192886
Query: 144 ctgttcaacgacggcgcggcgtgcggg 170
|||||||||||||||||| ||||||||
Sbjct: 3192885 ctgttcaacgacggcgcgtcgtgcggg 3192859
Score = 107 bits (54), Expect = 1e-020
Identities = 90/102 (88%)
Strand = Plus / Minus
Query: 232 tcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggt 291
|||||||||||||| | ||||||||||||| | ||||||||| || |||||||||||
Sbjct: 3190019 tcacggccaccaacctgtgcccgcccaactgggctctccccagcaacagcggcggctggt 3189960
Query: 292 gcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
|||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 3189959 gcaacccgccccgccctcacttcgacatggccgagcccgcct 3189918
Score = 99.6 bits (50), Expect = 3e-018
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 95 cctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcgctgttcaac 152
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12772050 cctgtacagccaggggtacggcacgagcacggcggcgctgagcacggcgctgttcaac 12771993
Score = 95.6 bits (48), Expect = 5e-017
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||| |||||||||| |||||||||| |||| ||||||||
Sbjct: 3190190 caggtggcgcgtgcgggtacgggaacctgtacacggcggggtacgggacgaacacggcgg 3190131
Query: 130 cgctgagcacggcgctgttcaacgacgg 157
|||||||| ||| |||||||||||||||
Sbjct: 3190130 cgctgagctcggtgctgttcaacgacgg 3190103
Score = 93.7 bits (47), Expect = 2e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
|||||||| |||||||| ||||||||||| |||| |||||||||||||||||||| |
Sbjct: 37505331 gggtacggggacctgtactcgacggggtacgggacgaacacggcggcgctgagcacggtg 37505390
Query: 144 ctgttcaacgacggcgcggcgtgcggg 170
|||||||||||||| ||| ||||||||
Sbjct: 37505391 ctgttcaacgacggggcgtcgtgcggg 37505417
Score = 85.7 bits (43), Expect = 4e-014
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
|||||||| ||||||||||||||||||||| | |||||||||| | || ||||||
Sbjct: 18551680 ggcggcgcgtgcgggtacggcaacctgtacgaccaggggtacggcgtggacaacgcggcg 18551739
Query: 132 ctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
|||||| |||||||||||||||||||||| ||||||||
Sbjct: 18551740 ctgagccaggcgctgttcaacgacggcgcgtcgtgcggg 18551778
Score = 83.8 bits (42), Expect = 2e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 511 gcacggggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacc 570
|||| |||||| ||||||||| |||||||||||||||||||||||| |||||| ||
Sbjct: 35157182 gcaccgggtggatgcccatgtcgcggaactggggccagaactggcagtccaactccgtcc 35157123
Query: 571 tggacaggcaggcgctctcgttccaggtcaccgccagcgacggccgcacc 620
| | | | |||||||||||||||| ||||||| ||||||| ||||||||
Sbjct: 35157122 tcgtcggccaggcgctctcgttccgcgtcaccggcagcgaccgccgcacc 35157073
Score = 83.8 bits (42), Expect = 2e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 277 acgacggcggctggtgcaacccgccgcgcccgcacttcgacatggc 322
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3185187 acgacggcggctggtgcaacccgccgcgccagcacttcgacatggc 3185232
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||||||| || | |||||| ||||| ||| |||||| ||||| |||||||||||||
Sbjct: 15400316 acggccaccgacctgtgcccggccaaccacgcgctccccggcgaccgcggcggctggtgc 15400375
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggccttcctccgcatcgc 346
|||||||||| || ||||||||| | || |||| |||||||||||||||||
Sbjct: 15400376 aacccgccgctccaccacttcgacctctcccagcccgccttcctccgcatcgc 15400428
Score = 75.8 bits (38), Expect = 4e-011
Identities = 81/94 (86%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 228 accgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggc 287
||||| ||||| |||||| | ||||||||||||| | ||||| ||||||| ||||||
Sbjct: 18551846 accgtgacggcgaccaacctgtgcccgcccaactgggcgctcccgagcgacggcggcggg 18551905
Query: 288 tggtgc-aacccgccgcgcccgcacttcgacatg 320
|||||| ||||||||||| |||||||||||||||
Sbjct: 18551906 tggtgcaaacccgccgcggccgcacttcgacatg 18551939
Score = 75.8 bits (38), Expect = 4e-011
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 81 tgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacg 140
||||||||||| ||||||||| | ||||||||||| | || || ||||||||||||
Sbjct: 3214611 tgcgggtacgggaacctgtacgaccaggggtacggcatcaacaacgcagcgctgagcacg 3214670
Query: 141 gcgctgttcaacgacggcgcggcgtgcggg 170
|||||||||||||||||||| ||||||||
Sbjct: 3214671 ccgctgttcaacgacggcgcgtcgtgcggg 3214700
Score = 75.8 bits (38), Expect = 4e-011
Identities = 91/109 (83%), Gaps = 6/109 (5%)
Strand = Plus / Plus
Query: 225 atcaccgtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggc 284
|||||||| |||| |||||||||||||||||||||||| | |||||| | |||||
Sbjct: 3209521 atcaccgtgacgggcaccaacttctgcccgcccaactatgacctccc------ctacggc 3209574
Query: 285 ggctggtgcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
|||||||||||| || | ||||| |||||||||||| || |||| ||||
Sbjct: 3209575 ggctggtgcaacacgacccgccctcacttcgacatgtcccagcccgcct 3209623
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 72 ggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcggcg 131
||||| || ||||||||||| |||||||||||| ||||||||| || || ||||||
Sbjct: 35158999 ggcggggcgtgcgggtacgggaacctgtacagccaggggtacggggtgaacaacgcggcg 35158940
Query: 132 ctgagcacggcgctgttcaac 152
|||||||||||||||||||||
Sbjct: 35158939 ctgagcacggcgctgttcaac 35158919
Score = 73.8 bits (37), Expect = 2e-010
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||||||||||||| | | | ||||||| | || || |
Sbjct: 3224477 caggtggcgcgtgcgggtacggcaacctgtacgaccagcgctacggcatcaacaacgcag 3224536
Query: 130 cgctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 3224537 cgctgagcacgccgctgttcaacgacggcgcgtcgtgcggg 3224577
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 642 cccgccggctggcagttcggccagaccttcgagggc 677
|||||||| ||||| |||||||||||||||||||||
Sbjct: 35157051 cccgccggatggcacttcggccagaccttcgagggc 35157016
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 517 ggtggcagcccatgtcccggaactggggccagaactggcagagc 560
|||||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 15400977 ggtggcaggccatggcgaggaactggggccagaactggcagagc 15401020
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggc 469
||||||||||||||||| | ||||||| | |||||||||||||||||| ||||
Sbjct: 3215054 ggttcaccatcaacgggttcaactacttcgagctggtgctggtgaccaacatggc 3215108
Score = 52.0 bits (26), Expect = 6e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgg 468
||||||||||||||||| || ||||||| | ||||||||| | ||||||||||
Sbjct: 3185413 ggttcaccatcaacgggaacagctacttcgagctggtgctgatcaccaacgtgg 3185466
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 126 gcggcgctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
||||||||||||||| | ||||||||| |||| ||| ||||||||
Sbjct: 3209413 gcggcgctgagcacgccactgttcaacaacggggcgtcgtgcggg 3209457
Score = 48.1 bits (24), Expect = 0.009
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 70 caggcggcgcctgcgggtacggcaacctgtacagcacggggtacggcacgagcacggcgg 129
|||| ||||| ||||||||||| ||| |||| | ||||||||||||| ||||||||
Sbjct: 15400128 caggtggcgcgtgcgggtacgggaacacgtacgggcaggggtacggcacggacacggcgg 15400187
Query: 130 cgctgagc 137
||||||||
Sbjct: 15400188 cgctgagc 15400195
Score = 46.1 bits (23), Expect = 0.037
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggc 469
|||||| |||||||||| | ||||||| | |||||||||||||||||| ||||
Sbjct: 3224904 ggttcatcatcaacgggttcaactacttcgagctggtgctggtgaccaacatggc 3224958
Score = 46.1 bits (23), Expect = 0.037
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 225 atcaccgtcacggccaccaacttctgcccgcccaactacggcctccc 271
|||||||| |||| |||||||| ||| ||||||||||| | ||||||
Sbjct: 3214764 atcaccgtgacgggcaccaactactgtccgcccaactatgacctccc 3214810
Score = 44.1 bits (22), Expect = 0.15
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 280 acggcggctggtgcaacccgccgcgcccgcacttcgacatggccgagccggcct 333
||||||||||||||||| || | ||||| ||||||||||| || |||| ||||
Sbjct: 3224663 acggcggctggtgcaacgcgacccgcccttacttcgacatgtcccagcctgcct 3224716
>gb|D39423.1|D39423 RICS0736A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 368
Score = 163 bits (82), Expect = 2e-037
Identities = 113/122 (92%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
||||| || |||||||||||||| ||||||||||| | |||||||||||||||||||| |
Sbjct: 234 gggtatgggaacctgtacagcaccgggtacggcaccaacacggcggcgctgagcacggtg 293
Query: 144 ctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgc-ggtgcgacaacgacgg 202
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||
Sbjct: 294 ctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcgggtgcgacaacgatgg 353
Query: 203 gc 204
||
Sbjct: 354 gc 355
>gb|D41913.1|D41913 RICS4917A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 344
Score = 163 bits (82), Expect = 2e-037
Identities = 116/128 (90%)
Strand = Plus / Plus
Query: 84 gggtacggcaacctgtacagcacggggtacggcacgagcacggcggcgctgagcacggcg 143
||||| || |||||||||||||| ||||||| ||| | |||||||||||||||||||| |
Sbjct: 217 gggtatgggaacctgtacagcaccgggtacgtcaccaacacggcggcgctgagcacggtg 276
Query: 144 ctgttcaacgacggcgcggcgtgcgggtcctgctacgagctgcggtgcgacaacgacggg 203
|||||||||||||||| | |||||||||| |||||||||||||||||||||||||| |||
Sbjct: 277 ctgttcaacgacggcgngncgtgcgggtcgtgctacgagctgcggtgcgacaacgatggg 336
Query: 204 cggtggtg 211
| ||||||
Sbjct: 337 cagtggtg 344
>gb|D49095.1|D49095 RICS15755A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 285
Score = 161 bits (81), Expect = 9e-037
Identities = 196/234 (83%), Gaps = 2/234 (0%)
Strand = Plus / Plus
Query: 456 gtgaccaacgtggcgggcgccggcgacgtgcgctccgtctccatccggggctcccgcacg 515
|||||||||||||| ||| | |||||||||| ||||| || ||| ||| ||| ||||
Sbjct: 16 gtgaccaacgtggccggcccaggcgacgtgcagtccgtgtcgatcaaggggtccagcacc 75
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggac 575
|||||||||||||||||||| || ||||||||||| |||||||||||||| ||||| |||
Sbjct: 76 gggtggcagcccatgtcccgcaantggggccagaantggcagagcaactcctacctcgac 135
Query: 576 aggcaggcgctctcgttccaggtcaccgccagcgacggccgcaccgtcaccagcaacggc 635
| ||| ||||| ||||||||| ||| |||||| || ||||||||||||||||||
Sbjct: 136 ggccagagcctctccttccaggtcgccgtcagcganggncgcaccgtcaccagcaacaan 195
Query: 636 gccgtccccgccggctggcagttcggccagaccttcgagggcggccagttctga 689
| ||| || ||||| |||||||| || |||| |||||||||||| |||||||||
Sbjct: 196 gtcgtgccggccggatggcagttngg-cagancttcgagggcgg-cagttctga 247
>dbj|AK070133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046O16, full
insert sequence
Length = 1071
Score = 155 bits (78), Expect = 6e-035
Identities = 93/98 (94%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 400 acggccaccaacttctgcccgcccaactacgcgctccccagcgacgacggcggctggtgc 459
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggc 331
||||||||||| ||||||||||||||||| |||||||
Sbjct: 460 aacccgccgcggccgcacttcgacatggcgcagccggc 497
Score = 103 bits (52), Expect = 2e-019
Identities = 90/100 (90%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 72 ggcggcgcctgcgggtacggcaacctgtaca-gcacggggtacggcacgagcacggcggc 130
||||| || |||||||||||||||||||||| ||| ||| ||||| ||| | ||||||||
Sbjct: 229 ggcggtgcgtgcgggtacggcaacctgtacacgcaaggg-tacgggacgcggacggcggc 287
Query: 131 gctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 288 gctgagcacggcgctgttcgacgacggcgcgtcgtgcggg 327
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 565 cgtacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggcc 615
||||||| ||| |||||| |||||||||| ||||||||||| ||||||||
Sbjct: 737 cgtacctcgacgggcagggcctctcgttccgggtcaccgccaccgacggcc 787
Score = 46.1 bits (23), Expect = 0.037
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 437 ctacttcaacctggtgctggtgaccaacgtggcgg 471
||||||| | |||||||||||||| ||||||||||
Sbjct: 603 ctacttcgagctggtgctggtgacgaacgtggcgg 637
>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
sequence
Length = 143507
Score = 155 bits (78), Expect = 6e-035
Identities = 93/98 (94%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 85470 acggccaccaacttctgcccgcccaactacgcgctccccagcgacgacggcggctggtgc 85529
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggc 331
||||||||||| ||||||||||||||||| |||||||
Sbjct: 85530 aacccgccgcggccgcacttcgacatggcgcagccggc 85567
Score = 107 bits (54), Expect = 1e-020
Identities = 92/102 (90%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 70 caggcggcgcctgcgggtacggcaacctgtaca-gcacggggtacggcacgagcacggcg 128
||||||| || |||||||||||||||||||||| ||| ||| ||||| ||| | ||||||
Sbjct: 85297 caggcggtgcgtgcgggtacggcaacctgtacacgcaaggg-tacgggacgcggacggcg 85355
Query: 129 gcgctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 85356 gcgctgagcacggcgctgttcgacgacggcgcgtcgtgcggg 85397
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 565 cgtacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggcc 615
||||||| ||| |||||| |||||||||| ||||||||||| ||||||||
Sbjct: 85807 cgtacctcgacgggcagggcctctcgttccgggtcaccgccaccgacggcc 85857
Score = 46.1 bits (23), Expect = 0.037
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 437 ctacttcaacctggtgctggtgaccaacgtggcgg 471
||||||| | |||||||||||||| ||||||||||
Sbjct: 85673 ctacttcgagctggtgctggtgacgaacgtggcgg 85707
>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0541C02
Length = 150660
Score = 155 bits (78), Expect = 6e-035
Identities = 93/98 (94%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 80921 acggccaccaacttctgcccgcccaactacgcgctccccagcgacgacggcggctggtgc 80980
Query: 294 aacccgccgcgcccgcacttcgacatggccgagccggc 331
||||||||||| ||||||||||||||||| |||||||
Sbjct: 80981 aacccgccgcggccgcacttcgacatggcgcagccggc 81018
Score = 107 bits (54), Expect = 1e-020
Identities = 92/102 (90%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 70 caggcggcgcctgcgggtacggcaacctgtaca-gcacggggtacggcacgagcacggcg 128
||||||| || |||||||||||||||||||||| ||| ||| ||||| ||| | ||||||
Sbjct: 80748 caggcggtgcgtgcgggtacggcaacctgtacacgcaaggg-tacgggacgcggacggcg 80806
Query: 129 gcgctgagcacggcgctgttcaacgacggcgcggcgtgcggg 170
||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 80807 gcgctgagcacggcgctgttcgacgacggcgcgtcgtgcggg 80848
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 565 cgtacctggacaggcaggcgctctcgttccaggtcaccgccagcgacggcc 615
||||||| ||| |||||| |||||||||| ||||||||||| ||||||||
Sbjct: 81258 cgtacctcgacgggcagggcctctcgttccgggtcaccgccaccgacggcc 81308
Score = 46.1 bits (23), Expect = 0.037
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 437 ctacttcaacctggtgctggtgaccaacgtggcgg 471
||||||| | |||||||||||||| ||||||||||
Sbjct: 81124 ctacttcgagctggtgctggtgacgaacgtggcgg 81158
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,678,031
Number of Sequences: 438736
Number of extensions: 1678031
Number of successful extensions: 18439
Number of sequences better than 0.5: 219
Number of HSP's better than 0.5 without gapping: 245
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14996
Number of HSP's gapped (non-prelim): 3276
length of query: 1022
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1001
effective length of database: 2,791,206,460
effective search space: 2793997666460
effective search space used: 2793997666460
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)