BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3671909.2.1
(767 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 230 9e-058
dbj|AP003571.4| Oryza sativa (japonica cultivar-group) geno... 230 9e-058
gb|AACV01014656.1| Oryza sativa (japonica cultivar-group) c... 230 9e-058
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 230 9e-058
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 230 9e-058
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 230 9e-058
gb|AACV01014652.1| Oryza sativa (japonica cultivar-group) c... 216 1e-053
gb|AQ328148.1|AQ328148 nbxb0042D19f CUGI Rice BAC Library O... 151 7e-034
gb|AACV01014651.1| Oryza sativa (japonica cultivar-group) c... 151 7e-034
dbj|AK060486.1| Oryza sativa (japonica cultivar-group) cDNA... 143 2e-031
dbj|AK106068.1| Oryza sativa (japonica cultivar-group) cDNA... 143 2e-031
gb|AACV01014648.1| Oryza sativa (japonica cultivar-group) c... 131 6e-028
gb|AACV01003510.1| Oryza sativa (japonica cultivar-group) c... 119 2e-024
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
ref|XM_464380.1| Oryza sativa (japonica cultivar-group), mRNA 117 9e-024
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 117 9e-024
dbj|AP003990.3| Oryza sativa (japonica cultivar-group) geno... 117 9e-024
dbj|AP004000.3| Oryza sativa (japonica cultivar-group) geno... 117 9e-024
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 117 9e-024
ref|XM_464378.1| Oryza sativa (japonica cultivar-group), mRNA 109 2e-021
gb|AACV01014650.1| Oryza sativa (japonica cultivar-group) c... 107 9e-021
dbj|AP003523.3| Oryza sativa (japonica cultivar-group) geno... 105 3e-020
gb|AACV01014662.1| Oryza sativa (japonica cultivar-group) c... 105 3e-020
dbj|AP002968.2| Oryza sativa (japonica cultivar-group) geno... 98 9e-018
dbj|AP003204.3| Oryza sativa (japonica cultivar-group) geno... 98 9e-018
gb|AACV01001144.1| Oryza sativa (japonica cultivar-group) c... 98 9e-018
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 98 9e-018
ref|NM_193877.1| Oryza sativa (japonica cultivar-group), p... 98 9e-018
ref|NT_079947.2| Oryza sativa (japonica cultivar-group) 98 9e-018
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 98 9e-018
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 98 9e-018
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 98 9e-018
dbj|AK120987.1| Oryza sativa (japonica cultivar-group) cDNA... 62 5e-007
gb|AC109595.2| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 62 5e-007
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
dbj|AK120914.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
gb|AACV01000499.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
ref|NM_188578.1| Oryza sativa (japonica cultivar-group), p... 60 2e-006
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 60 2e-006
dbj|AP003434.2| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|AQ870215.1|AQ870215 nbeb0036N08f CUGI Rice BAC Library (... 58 7e-006
dbj|AK110659.1| Oryza sativa (japonica cultivar-group) cDNA... 58 7e-006
dbj|AP004811.2| Oryza sativa (japonica cultivar-group) geno... 58 7e-006
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 58 7e-006
gb|AACV01013783.1| Oryza sativa (japonica cultivar-group) c... 58 7e-006
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 58 7e-006
gb|CA755419.1|CA755419 BR030020000_PLATE_C01_3_004.ab1 OA O... 52 5e-004
gb|CB647244.1|CB647244 OSJNEb10B13.r OSJNEb Oryza sativa (j... 52 5e-004
gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 ... 52 5e-004
gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 ... 52 5e-004
gb|AACV01008267.1| Oryza sativa (japonica cultivar-group) c... 52 5e-004
ref|NM_185174.1| Oryza sativa (japonica cultivar-group), mRNA 52 5e-004
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 52 5e-004
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 52 5e-004
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
dbj|AP005467.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP003711.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP006176.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP006446.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP003575.2| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01013516.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01014544.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01017275.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01017278.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01019290.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|XM_480132.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
ref|XM_480133.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 50 0.002
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 50 0.002
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401237.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AK108512.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
ref|NM_188577.1| Oryza sativa (japonica cultivar-group), p... 48 0.007
gb|AU090603.1|AU090603 AU090603 Rice cDNA from young root O... 44 0.11
dbj|AK067458.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
dbj|AK100987.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
gb|AACV01019286.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|AACV01020789.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
ref|NM_194793.1| Oryza sativa (japonica cultivar-group) put... 44 0.11
ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chr... 44 0.11
gb|CH401243.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|AQ327338.1|AQ327338 nbxb0040D24r CUGI Rice BAC Library O... 42 0.43
gb|AU071096.1|AU071096 AU071096 Rice cDNA from young root O... 42 0.43
gb|CB641718.1|CB641718 OSJNEb01I06.r OSJNEb Oryza sativa (j... 42 0.43
gb|CB643546.1|CB643546 OSJNEb04E15.r OSJNEb Oryza sativa (j... 42 0.43
gb|CB644071.1|CB644071 OSJNEb05B21.r OSJNEb Oryza sativa (j... 42 0.43
gb|CB648724.1|CB648724 OSJNEb12E01.r OSJNEb Oryza sativa (j... 42 0.43
gb|CB685613.1|CB685613 OSJNEf16C21.r OSJNEf Oryza sativa (j... 42 0.43
dbj|AP004859.1| Oryza sativa (japonica cultivar-group) chro... 42 0.43
dbj|AK072588.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.43
dbj|AK100321.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.43
dbj|AK111616.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.43
gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L1... 42 0.43
gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbar... 42 0.43
gb|AC134237.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|AC121490.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|AC144427.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
dbj|AP004850.3| Oryza sativa (japonica cultivar-group) geno... 42 0.43
dbj|AP005385.3| Oryza sativa (japonica cultivar-group) geno... 42 0.43
dbj|AP005570.3| Oryza sativa (japonica cultivar-group) geno... 42 0.43
dbj|AP005419.3| Oryza sativa (japonica cultivar-group) geno... 42 0.43
gb|AACV01004242.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01004855.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01005757.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01006705.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01017377.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01021936.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01027445.1| Oryza sativa (japonica cultivar-group) C... 42 0.43
ref|NM_197339.1| Oryza sativa (japonica cultivar-group) put... 42 0.43
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 42 0.43
ref|XM_465538.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.43
ref|XM_465542.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.43
ref|XM_466583.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.43
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 42 0.43
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 42 0.43
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 42 0.43
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 42 0.43
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 42 0.43
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 230 bits (116), Expect = 9e-058
Identities = 336/403 (83%), Gaps = 11/403 (2%)
Strand = Plus / Minus
Query: 362 tggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggccatgt 421
|||||||||| | |||||||||||||| | |||||||| ||||| |||| | |||||
Sbjct: 3168889 tggggcggagcgggaggtcggccttccggcgggcggtgataccaaatccctcagtcatgt 3168830
Query: 422 cgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaaggctgg 481
| ||||| |||||||| | |||| ||||||||||||||||||||||||| || ||||| |
Sbjct: 3168829 caaactcagcggggtcggccacgtcgggcgcctcccagtcgaagtggaatagcaggctag 3168770
Query: 482 cgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccggccgg 541
||||||||||||| |||||||||||||||||||||| || || ||||||| |||||| |
Sbjct: 3168769 cgagcgcgagctccacgttggcgagcccgaacgccaacccagggcacatccgccggccag 3168710
Query: 542 cgccgaacggcaggagctcgaagtcggcgcccttgaactccaccg-cgctg--gcctc-- 596
|||| ||||||||||||||||||||||||||| |||| ||||||| ||| | |||||
Sbjct: 3168709 cgccaaacggcaggagctcgaagtcggcgcccctgaaatccaccgccgcggccgcctctc 3168650
Query: 597 -ggcctcgaaccgctcggggcggaactcctcggg---gtcgcccggccagtacctgccgt 652
| | ||||||||||| || |||||||||||||| | |||| |||||||||| |||
Sbjct: 3168649 cgtcttcgaaccgctctggccggaactcctcgggcgagccgccgggccagtaccgctcgt 3168590
Query: 653 cgcggcccagcgcccagacgttcaccagcacggtggtgcc-cgcaggcacgtcgtagccc 711
||||||| | ||||||||||| |||||||| ||||| ||| ||||||||||||||
Sbjct: 3168589 cgcggccgattgcccagacgttgaccagcacctgcgtgccgcgc-ggcacgtcgtagccg 3168531
Query: 712 agcacgcgacgcggctcctgggactgccgcgggagcagcagcg 754
||||| || | ||||||| || ||| ||||| ||||||||||
Sbjct: 3168530 agcacccggcacggctcccggcactcacgcggcagcagcagcg 3168488
Score = 216 bits (109), Expect = 1e-053
Identities = 336/407 (82%), Gaps = 11/407 (2%)
Strand = Plus / Minus
Query: 358 aggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggcc 417
||||| || ||||| || |||| |||||| || | ||| |||||||| |||||||| | |
Sbjct: 3155866 aggattggacggagcaggaggttggccttgcggcgcgccgtgatgccgaacgcctctgtc 3155807
Query: 418 atgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaagg 477
||||||||||||| ||||||| ||| |||| ||||||||||||| |||||| || |||
Sbjct: 3155806 atgtcgaactcggtcgggtcagccacaccggaggcctcccagtcgatgtggaagagcagg 3155747
Query: 478 ctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccgg 537
|||||||| | |||||| ||||| |||| |||||||||||| || || ||||||| ||||
Sbjct: 3155746 ctggcgagtgggagctccacgtttgcgaacccgaacgccatcccggggcacatccgccgg 3155687
Query: 538 ccggcgccgaacggcaggagctcgaagtcggcgcccttgaactccaccgcgctg---gcc 594
||| ||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct: 3155686 ccgccgccgaacggcaggagctcgaagtcggcgcccttgaagtccaccgcggcggccgcc 3155627
Query: 595 tcggcct---cgaaccgctcggggcggaactcctcggg---gtcgcccggccagtacctg 648
||| | | |||||||||| || ||||||||||| || | |||| ||||||||||
Sbjct: 3155626 tcgccgtcgccgaaccgctccggccggaactcctccggcgagccgccgggccagtaccgc 3155567
Query: 649 ccgtcgcggcccagcgcccagacgttcaccagcacggtggtgcc-cgcaggcacgtcgta 707
|||||||||| | ||||||| ||||||||||||| | ||| ||| |||||||||||
Sbjct: 3155566 tcgtcgcggccgatcgcccaggcgttcaccagcacctgcgcgccgcgc-ggcacgtcgta 3155508
Query: 708 gcccagcacgcgacgcggctcctgggactgccgcgggagcagcagcg 754
||| ||||| || | ||||||| || ||| ||||||||||||||||
Sbjct: 3155507 gccgagcacccggcacggctcccggcactcgcgcgggagcagcagcg 3155461
Score = 174 bits (88), Expect = 5e-041
Identities = 178/208 (85%)
Strand = Plus / Minus
Query: 358 aggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggcc 417
|||| |||||| || || |||||| |||| || | ||| |||||||| ||||||||||||
Sbjct: 3119964 aggacggggcgtagcaggaggtcgcccttgcggcgcgctgtgatgcctaacgcctcggcc 3119905
Query: 418 atgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaagg 477
||||| |||| ||| ||||| | || ||||||| ||||||||||||||||||| || |||
Sbjct: 3119904 atgtccaacttggcagggtcggccatgccgggcacctcccagtcgaagtggaagagcagg 3119845
Query: 478 ctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccgg 537
|||||||||| |||||||| |||||||||| ||||||||| || || ||||||| |||
Sbjct: 3119844 ctggcgagcgtgagctcgatgttggcgagcgcgaacgccaccccggggcacatccggcgg 3119785
Query: 538 ccggcgccgaacggcaggagctcgaagt 565
||||||||||| |||| |||||||||||
Sbjct: 3119784 ccggcgccgaatggcaagagctcgaagt 3119757
Score = 167 bits (84), Expect = 1e-038
Identities = 165/192 (85%)
Strand = Plus / Minus
Query: 397 gtgatgccaaacgcctcggccatgtcgaactcggcggggtcagacacgccgggcgcctcc 456
||||| || |||||||| | |||||||| || || ||||| | || ||| ||| |||||
Sbjct: 3172653 gtgataccgaacgcctcagtcatgtcgagcttggtcgggtcggccatgccaggcacctcc 3172594
Query: 457 cagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgcc 516
|||||||||||||| || ||||||| ||| | |||||| |||||||| ||||||||||||
Sbjct: 3172593 cagtcgaagtggaagagcaggctggagagagggagctccacgttggcaagcccgaacgcc 3172534
Query: 517 atgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttg 576
|| || || ||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 3172533 atcccggggcacatccgccggccgccgccgaacggcaggagctcgaagtcggcgcccctg 3172474
Query: 577 aactccaccgcg 588
|| |||||||||
Sbjct: 3172473 aagtccaccgcg 3172462
Score = 151 bits (76), Expect = 7e-034
Identities = 241/294 (81%), Gaps = 9/294 (3%)
Strand = Plus / Minus
Query: 399 gatgccaaacgcctcggccatgtcgaactcggcggggtcagacacgccgggcgcctccca 458
|||||| |||||||| | |||||||| || || ||||| | || |||||| |||||||
Sbjct: 3147124 gatgccgaacgcctcagtcatgtcgagcttggtcgggtcggccattccgggcacctccca 3147065
Query: 459 gtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgccat 518
||| |||||||| || | ||||||||| | |||||| ||||||||||||||||||||||
Sbjct: 3147064 gtcaaagtggaagagcaagctggcgagagggagctccacgttggcgagcccgaacgccaa 3147005
Query: 519 gcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttgaa 578
|| || ||||||| ||||||||||||||||||||| |||||| |||||| |||||||||
Sbjct: 3147004 cccggggcacatccgccggccggcgccgaacggcagaagctcgtagtcggtgcccttgaa 3146945
Query: 579 ctccaccgcgctggc---ctcggcct---cgaaccgctcggggcggaactcctcggg--- 629
|||| |||| ||| |||| | | |||||||||| || ||||||||||||||
Sbjct: 3146944 atccaacgcggcggctggctcgccgtcgccgaaccgctccggccggaactcctcgggcga 3146885
Query: 630 gtcgcccggccagtacctgccgtcgcggcccagcgcccagacgttcaccagcac 683
| |||| |||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 3146884 gccgccaggccagtaccgcgggtcgcggccgatcgcccagacgttgaccagcac 3146831
Score = 143 bits (72), Expect = 2e-031
Identities = 177/212 (83%)
Strand = Plus / Minus
Query: 354 gcggaggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctc 413
|||||||| |||||| || || |||||| |||| || | ||| |||||||| |||| |||
Sbjct: 3110855 gcggaggacggggcgtagcaggaggtcgcccttgcggcgcgccgtgatgcccaacgtctc 3110796
Query: 414 ggccatgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacag 473
|| |||||| | || ||| ||||| | || | ||||| ||||||||||||||||||| ||
Sbjct: 3110795 ggtcatgtccagcttggcagggtcggccatgtcgggcacctcccagtcgaagtggaaaag 3110736
Query: 474 aaggctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcct 533
|| |||||||||| |||||| | |||||||||| | |||||||| || || |||||||
Sbjct: 3110735 cagactggcgagcgtgagctcaatgttggcgagcgcaaacgccatcccggggcacatccg 3110676
Query: 534 ccggccggcgccgaacggcaggagctcgaagt 565
||| |||||||||||||| |||||||||||||
Sbjct: 3110675 ccgcccggcgccgaacggaaggagctcgaagt 3110644
Score = 121 bits (61), Expect = 6e-025
Identities = 172/209 (82%)
Strand = Plus / Minus
Query: 379 tcggccttccgtctcgcggtgatgccaaacgcctcggccatgtcgaactcggcggggtca 438
||||||||||| | || |||||||| ||||| || | |||||||| || ||| |||||
Sbjct: 3176408 tcggccttccgccgtgcagtgatgccgaacgcttctgtcatgtcgagcttggccgggtcg 3176349
Query: 439 gacacgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
| || ||||||| ||||||| || |||||||| || | ||||||||| | |||||| |||
Sbjct: 3176348 gccaagccgggcacctcccaatcaaagtggaaaagcaagctggcgagagggagctccacg 3176289
Query: 499 ttggcgagcccgaacgccatgcccggacacatcctccggccggcgccgaacggcaggagc 558
|||||||||||||||||||| || || ||||| | ||| || || || |||||||||| |
Sbjct: 3176288 ttggcgagcccgaacgccatccctgggcacattcgccgcccagcaccaaacggcaggaac 3176229
Query: 559 tcgaagtcggcgcccttgaactccaccgc 587
|||||||||| ||| |||| ||||||||
Sbjct: 3176228 tcgaagtcggttcccctgaagtccaccgc 3176200
Score = 105 bits (53), Expect = 3e-020
Identities = 116/137 (84%)
Strand = Plus / Plus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaa 512
|||||||||||||||||| || ||||| |||||| ||||||| | | |||||| ||||
Sbjct: 3241773 ctcccagtcgaagtggaagaggaggctcgcgagcccgagctccatgatggcgacggcgaa 3241832
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcc 572
|||| ||| || ||||||||||||||||| |||||||||| || ||||||||| | ||
Sbjct: 3241833 tgccacgccggggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccc 3241892
Query: 573 cttgaactccaccgcgc 589
|||||| ||||||||||
Sbjct: 3241893 cttgaagtccaccgcgc 3241909
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 650 cgtcgcggcccagcgcccagacgttcaccagcacggtggtgcccgcaggcacgtcgtagc 709
|||||||||| | |||||| |||||||| | ||| |||| |||||| || ||||||||||
Sbjct: 1614245 cgtcgcggccgatcgcccacacgttcacgaacaccgtggcgcccgccgggacgtcgtagc 1614304
Query: 710 c 710
|
Sbjct: 1614305 c 1614305
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0458E02
Length = 154458
Score = 230 bits (116), Expect = 9e-058
Identities = 336/403 (83%), Gaps = 11/403 (2%)
Strand = Plus / Minus
Query: 362 tggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggccatgt 421
|||||||||| | |||||||||||||| | |||||||| ||||| |||| | |||||
Sbjct: 126849 tggggcggagcgggaggtcggccttccggcgggcggtgataccaaatccctcagtcatgt 126790
Query: 422 cgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaaggctgg 481
| ||||| |||||||| | |||| ||||||||||||||||||||||||| || ||||| |
Sbjct: 126789 caaactcagcggggtcggccacgtcgggcgcctcccagtcgaagtggaatagcaggctag 126730
Query: 482 cgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccggccgg 541
||||||||||||| |||||||||||||||||||||| || || ||||||| |||||| |
Sbjct: 126729 cgagcgcgagctccacgttggcgagcccgaacgccaacccagggcacatccgccggccag 126670
Query: 542 cgccgaacggcaggagctcgaagtcggcgcccttgaactccaccg-cgctg--gcctc-- 596
|||| ||||||||||||||||||||||||||| |||| ||||||| ||| | |||||
Sbjct: 126669 cgccaaacggcaggagctcgaagtcggcgcccctgaaatccaccgccgcggccgcctctc 126610
Query: 597 -ggcctcgaaccgctcggggcggaactcctcggg---gtcgcccggccagtacctgccgt 652
| | ||||||||||| || |||||||||||||| | |||| |||||||||| |||
Sbjct: 126609 cgtcttcgaaccgctctggccggaactcctcgggcgagccgccgggccagtaccgctcgt 126550
Query: 653 cgcggcccagcgcccagacgttcaccagcacggtggtgcc-cgcaggcacgtcgtagccc 711
||||||| | ||||||||||| |||||||| ||||| ||| ||||||||||||||
Sbjct: 126549 cgcggccgattgcccagacgttgaccagcacctgcgtgccgcgc-ggcacgtcgtagccg 126491
Query: 712 agcacgcgacgcggctcctgggactgccgcgggagcagcagcg 754
||||| || | ||||||| || ||| ||||| ||||||||||
Sbjct: 126490 agcacccggcacggctcccggcactcacgcggcagcagcagcg 126448
Score = 216 bits (109), Expect = 1e-053
Identities = 336/407 (82%), Gaps = 11/407 (2%)
Strand = Plus / Minus
Query: 358 aggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggcc 417
||||| || ||||| || |||| |||||| || | ||| |||||||| |||||||| | |
Sbjct: 113826 aggattggacggagcaggaggttggccttgcggcgcgccgtgatgccgaacgcctctgtc 113767
Query: 418 atgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaagg 477
||||||||||||| ||||||| ||| |||| ||||||||||||| |||||| || |||
Sbjct: 113766 atgtcgaactcggtcgggtcagccacaccggaggcctcccagtcgatgtggaagagcagg 113707
Query: 478 ctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccgg 537
|||||||| | |||||| ||||| |||| |||||||||||| || || ||||||| ||||
Sbjct: 113706 ctggcgagtgggagctccacgtttgcgaacccgaacgccatcccggggcacatccgccgg 113647
Query: 538 ccggcgccgaacggcaggagctcgaagtcggcgcccttgaactccaccgcgctg---gcc 594
||| ||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct: 113646 ccgccgccgaacggcaggagctcgaagtcggcgcccttgaagtccaccgcggcggccgcc 113587
Query: 595 tcggcct---cgaaccgctcggggcggaactcctcggg---gtcgcccggccagtacctg 648
||| | | |||||||||| || ||||||||||| || | |||| ||||||||||
Sbjct: 113586 tcgccgtcgccgaaccgctccggccggaactcctccggcgagccgccgggccagtaccgc 113527
Query: 649 ccgtcgcggcccagcgcccagacgttcaccagcacggtggtgcc-cgcaggcacgtcgta 707
|||||||||| | ||||||| ||||||||||||| | ||| ||| |||||||||||
Sbjct: 113526 tcgtcgcggccgatcgcccaggcgttcaccagcacctgcgcgccgcgc-ggcacgtcgta 113468
Query: 708 gcccagcacgcgacgcggctcctgggactgccgcgggagcagcagcg 754
||| ||||| || | ||||||| || ||| ||||||||||||||||
Sbjct: 113467 gccgagcacccggcacggctcccggcactcgcgcgggagcagcagcg 113421
Score = 174 bits (88), Expect = 5e-041
Identities = 178/208 (85%)
Strand = Plus / Minus
Query: 358 aggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggcc 417
|||| |||||| || || |||||| |||| || | ||| |||||||| ||||||||||||
Sbjct: 77924 aggacggggcgtagcaggaggtcgcccttgcggcgcgctgtgatgcctaacgcctcggcc 77865
Query: 418 atgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaagg 477
||||| |||| ||| ||||| | || ||||||| ||||||||||||||||||| || |||
Sbjct: 77864 atgtccaacttggcagggtcggccatgccgggcacctcccagtcgaagtggaagagcagg 77805
Query: 478 ctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccgg 537
|||||||||| |||||||| |||||||||| ||||||||| || || ||||||| |||
Sbjct: 77804 ctggcgagcgtgagctcgatgttggcgagcgcgaacgccaccccggggcacatccggcgg 77745
Query: 538 ccggcgccgaacggcaggagctcgaagt 565
||||||||||| |||| |||||||||||
Sbjct: 77744 ccggcgccgaatggcaagagctcgaagt 77717
Score = 167 bits (84), Expect = 1e-038
Identities = 165/192 (85%)
Strand = Plus / Minus
Query: 397 gtgatgccaaacgcctcggccatgtcgaactcggcggggtcagacacgccgggcgcctcc 456
||||| || |||||||| | |||||||| || || ||||| | || ||| ||| |||||
Sbjct: 130613 gtgataccgaacgcctcagtcatgtcgagcttggtcgggtcggccatgccaggcacctcc 130554
Query: 457 cagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgcc 516
|||||||||||||| || ||||||| ||| | |||||| |||||||| ||||||||||||
Sbjct: 130553 cagtcgaagtggaagagcaggctggagagagggagctccacgttggcaagcccgaacgcc 130494
Query: 517 atgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttg 576
|| || || ||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 130493 atcccggggcacatccgccggccgccgccgaacggcaggagctcgaagtcggcgcccctg 130434
Query: 577 aactccaccgcg 588
|| |||||||||
Sbjct: 130433 aagtccaccgcg 130422
Score = 151 bits (76), Expect = 7e-034
Identities = 241/294 (81%), Gaps = 9/294 (3%)
Strand = Plus / Minus
Query: 399 gatgccaaacgcctcggccatgtcgaactcggcggggtcagacacgccgggcgcctccca 458
|||||| |||||||| | |||||||| || || ||||| | || |||||| |||||||
Sbjct: 105084 gatgccgaacgcctcagtcatgtcgagcttggtcgggtcggccattccgggcacctccca 105025
Query: 459 gtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgccat 518
||| |||||||| || | ||||||||| | |||||| ||||||||||||||||||||||
Sbjct: 105024 gtcaaagtggaagagcaagctggcgagagggagctccacgttggcgagcccgaacgccaa 104965
Query: 519 gcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttgaa 578
|| || ||||||| ||||||||||||||||||||| |||||| |||||| |||||||||
Sbjct: 104964 cccggggcacatccgccggccggcgccgaacggcagaagctcgtagtcggtgcccttgaa 104905
Query: 579 ctccaccgcgctggc---ctcggcct---cgaaccgctcggggcggaactcctcggg--- 629
|||| |||| ||| |||| | | |||||||||| || ||||||||||||||
Sbjct: 104904 atccaacgcggcggctggctcgccgtcgccgaaccgctccggccggaactcctcgggcga 104845
Query: 630 gtcgcccggccagtacctgccgtcgcggcccagcgcccagacgttcaccagcac 683
| |||| |||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 104844 gccgccaggccagtaccgcgggtcgcggccgatcgcccagacgttgaccagcac 104791
Score = 143 bits (72), Expect = 2e-031
Identities = 177/212 (83%)
Strand = Plus / Minus
Query: 354 gcggaggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctc 413
|||||||| |||||| || || |||||| |||| || | ||| |||||||| |||| |||
Sbjct: 68815 gcggaggacggggcgtagcaggaggtcgcccttgcggcgcgccgtgatgcccaacgtctc 68756
Query: 414 ggccatgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacag 473
|| |||||| | || ||| ||||| | || | ||||| ||||||||||||||||||| ||
Sbjct: 68755 ggtcatgtccagcttggcagggtcggccatgtcgggcacctcccagtcgaagtggaaaag 68696
Query: 474 aaggctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcct 533
|| |||||||||| |||||| | |||||||||| | |||||||| || || |||||||
Sbjct: 68695 cagactggcgagcgtgagctcaatgttggcgagcgcaaacgccatcccggggcacatccg 68636
Query: 534 ccggccggcgccgaacggcaggagctcgaagt 565
||| |||||||||||||| |||||||||||||
Sbjct: 68635 ccgcccggcgccgaacggaaggagctcgaagt 68604
Score = 121 bits (61), Expect = 6e-025
Identities = 172/209 (82%)
Strand = Plus / Minus
Query: 379 tcggccttccgtctcgcggtgatgccaaacgcctcggccatgtcgaactcggcggggtca 438
||||||||||| | || |||||||| ||||| || | |||||||| || ||| |||||
Sbjct: 134368 tcggccttccgccgtgcagtgatgccgaacgcttctgtcatgtcgagcttggccgggtcg 134309
Query: 439 gacacgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
| || ||||||| ||||||| || |||||||| || | ||||||||| | |||||| |||
Sbjct: 134308 gccaagccgggcacctcccaatcaaagtggaaaagcaagctggcgagagggagctccacg 134249
Query: 499 ttggcgagcccgaacgccatgcccggacacatcctccggccggcgccgaacggcaggagc 558
|||||||||||||||||||| || || ||||| | ||| || || || |||||||||| |
Sbjct: 134248 ttggcgagcccgaacgccatccctgggcacattcgccgcccagcaccaaacggcaggaac 134189
Query: 559 tcgaagtcggcgcccttgaactccaccgc 587
|||||||||| ||| |||| ||||||||
Sbjct: 134188 tcgaagtcggttcccctgaagtccaccgc 134160
>gb|AACV01014656.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014656, whole
genome shotgun sequence
Length = 19030
Score = 230 bits (116), Expect = 9e-058
Identities = 336/403 (83%), Gaps = 11/403 (2%)
Strand = Plus / Plus
Query: 362 tggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggccatgt 421
|||||||||| | |||||||||||||| | |||||||| ||||| |||| | |||||
Sbjct: 8378 tggggcggagcgggaggtcggccttccggcgggcggtgataccaaatccctcagtcatgt 8437
Query: 422 cgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaaggctgg 481
| ||||| |||||||| | |||| ||||||||||||||||||||||||| || ||||| |
Sbjct: 8438 caaactcagcggggtcggccacgtcgggcgcctcccagtcgaagtggaatagcaggctag 8497
Query: 482 cgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccggccgg 541
||||||||||||| |||||||||||||||||||||| || || ||||||| |||||| |
Sbjct: 8498 cgagcgcgagctccacgttggcgagcccgaacgccaacccagggcacatccgccggccag 8557
Query: 542 cgccgaacggcaggagctcgaagtcggcgcccttgaactccaccg-cgctg--gcctc-- 596
|||| ||||||||||||||||||||||||||| |||| ||||||| ||| | |||||
Sbjct: 8558 cgccaaacggcaggagctcgaagtcggcgcccctgaaatccaccgccgcggccgcctctc 8617
Query: 597 -ggcctcgaaccgctcggggcggaactcctcggg---gtcgcccggccagtacctgccgt 652
| | ||||||||||| || |||||||||||||| | |||| |||||||||| |||
Sbjct: 8618 cgtcttcgaaccgctctggccggaactcctcgggcgagccgccgggccagtaccgctcgt 8677
Query: 653 cgcggcccagcgcccagacgttcaccagcacggtggtgcc-cgcaggcacgtcgtagccc 711
||||||| | ||||||||||| |||||||| ||||| ||| ||||||||||||||
Sbjct: 8678 cgcggccgattgcccagacgttgaccagcacctgcgtgccgcgc-ggcacgtcgtagccg 8736
Query: 712 agcacgcgacgcggctcctgggactgccgcgggagcagcagcg 754
||||| || | ||||||| || ||| ||||| ||||||||||
Sbjct: 8737 agcacccggcacggctcccggcactcacgcggcagcagcagcg 8779
Score = 167 bits (84), Expect = 1e-038
Identities = 165/192 (85%)
Strand = Plus / Plus
Query: 397 gtgatgccaaacgcctcggccatgtcgaactcggcggggtcagacacgccgggcgcctcc 456
||||| || |||||||| | |||||||| || || ||||| | || ||| ||| |||||
Sbjct: 4614 gtgataccgaacgcctcagtcatgtcgagcttggtcgggtcggccatgccaggcacctcc 4673
Query: 457 cagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgcc 516
|||||||||||||| || ||||||| ||| | |||||| |||||||| ||||||||||||
Sbjct: 4674 cagtcgaagtggaagagcaggctggagagagggagctccacgttggcaagcccgaacgcc 4733
Query: 517 atgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttg 576
|| || || ||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 4734 atcccggggcacatccgccggccgccgccgaacggcaggagctcgaagtcggcgcccctg 4793
Query: 577 aactccaccgcg 588
|| |||||||||
Sbjct: 4794 aagtccaccgcg 4805
Score = 121 bits (61), Expect = 6e-025
Identities = 172/209 (82%)
Strand = Plus / Plus
Query: 379 tcggccttccgtctcgcggtgatgccaaacgcctcggccatgtcgaactcggcggggtca 438
||||||||||| | || |||||||| ||||| || | |||||||| || ||| |||||
Sbjct: 859 tcggccttccgccgtgcagtgatgccgaacgcttctgtcatgtcgagcttggccgggtcg 918
Query: 439 gacacgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
| || ||||||| ||||||| || |||||||| || | ||||||||| | |||||| |||
Sbjct: 919 gccaagccgggcacctcccaatcaaagtggaaaagcaagctggcgagagggagctccacg 978
Query: 499 ttggcgagcccgaacgccatgcccggacacatcctccggccggcgccgaacggcaggagc 558
|||||||||||||||||||| || || ||||| | ||| || || || |||||||||| |
Sbjct: 979 ttggcgagcccgaacgccatccctgggcacattcgccgcccagcaccaaacggcaggaac 1038
Query: 559 tcgaagtcggcgcccttgaactccaccgc 587
|||||||||| ||| |||| ||||||||
Sbjct: 1039 tcgaagtcggttcccctgaagtccaccgc 1067
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 230 bits (116), Expect = 9e-058
Identities = 336/403 (83%), Gaps = 11/403 (2%)
Strand = Plus / Minus
Query: 362 tggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggccatgt 421
|||||||||| | |||||||||||||| | |||||||| ||||| |||| | |||||
Sbjct: 7040567 tggggcggagcgggaggtcggccttccggcgggcggtgataccaaatccctcagtcatgt 7040508
Query: 422 cgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaaggctgg 481
| ||||| |||||||| | |||| ||||||||||||||||||||||||| || ||||| |
Sbjct: 7040507 caaactcagcggggtcggccacgtcgggcgcctcccagtcgaagtggaatagcaggctag 7040448
Query: 482 cgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccggccgg 541
||||||||||||| |||||||||||||||||||||| || || ||||||| |||||| |
Sbjct: 7040447 cgagcgcgagctccacgttggcgagcccgaacgccaacccagggcacatccgccggccag 7040388
Query: 542 cgccgaacggcaggagctcgaagtcggcgcccttgaactccaccg-cgctg--gcctc-- 596
|||| ||||||||||||||||||||||||||| |||| ||||||| ||| | |||||
Sbjct: 7040387 cgccaaacggcaggagctcgaagtcggcgcccctgaaatccaccgccgcggccgcctctc 7040328
Query: 597 -ggcctcgaaccgctcggggcggaactcctcggg---gtcgcccggccagtacctgccgt 652
| | ||||||||||| || |||||||||||||| | |||| |||||||||| |||
Sbjct: 7040327 cgtcttcgaaccgctctggccggaactcctcgggcgagccgccgggccagtaccgctcgt 7040268
Query: 653 cgcggcccagcgcccagacgttcaccagcacggtggtgcc-cgcaggcacgtcgtagccc 711
||||||| | ||||||||||| |||||||| ||||| ||| ||||||||||||||
Sbjct: 7040267 cgcggccgattgcccagacgttgaccagcacctgcgtgccgcgc-ggcacgtcgtagccg 7040209
Query: 712 agcacgcgacgcggctcctgggactgccgcgggagcagcagcg 754
||||| || | ||||||| || ||| ||||| ||||||||||
Sbjct: 7040208 agcacccggcacggctcccggcactcacgcggcagcagcagcg 7040166
Score = 216 bits (109), Expect = 1e-053
Identities = 336/407 (82%), Gaps = 11/407 (2%)
Strand = Plus / Minus
Query: 358 aggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggcc 417
||||| || ||||| || |||| |||||| || | ||| |||||||| |||||||| | |
Sbjct: 7006907 aggattggacggagcaggaggttggccttgcggcgcgccgtgatgccgaacgcctctgtc 7006848
Query: 418 atgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaagg 477
||||||||||||| ||||||| ||| |||| ||||||||||||| |||||| || |||
Sbjct: 7006847 atgtcgaactcggtcgggtcagccacaccggaggcctcccagtcgatgtggaagagcagg 7006788
Query: 478 ctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccgg 537
|||||||| | |||||| ||||| |||| |||||||||||| || || ||||||| ||||
Sbjct: 7006787 ctggcgagtgggagctccacgtttgcgaacccgaacgccatcccggggcacatccgccgg 7006728
Query: 538 ccggcgccgaacggcaggagctcgaagtcggcgcccttgaactccaccgcgctg---gcc 594
||| ||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct: 7006727 ccgccgccgaacggcaggagctcgaagtcggcgcccttgaagtccaccgcggcggccgcc 7006668
Query: 595 tcggcct---cgaaccgctcggggcggaactcctcggg---gtcgcccggccagtacctg 648
||| | | |||||||||| || ||||||||||| || | |||| ||||||||||
Sbjct: 7006667 tcgccgtcgccgaaccgctccggccggaactcctccggcgagccgccgggccagtaccgc 7006608
Query: 649 ccgtcgcggcccagcgcccagacgttcaccagcacggtggtgcc-cgcaggcacgtcgta 707
|||||||||| | ||||||| ||||||||||||| | ||| ||| |||||||||||
Sbjct: 7006607 tcgtcgcggccgatcgcccaggcgttcaccagcacctgcgcgccgcgc-ggcacgtcgta 7006549
Query: 708 gcccagcacgcgacgcggctcctgggactgccgcgggagcagcagcg 754
||| ||||| || | ||||||| || ||| ||||||||||||||||
Sbjct: 7006548 gccgagcacccggcacggctcccggcactcgcgcgggagcagcagcg 7006502
Score = 167 bits (84), Expect = 1e-038
Identities = 165/192 (85%)
Strand = Plus / Minus
Query: 397 gtgatgccaaacgcctcggccatgtcgaactcggcggggtcagacacgccgggcgcctcc 456
||||| || |||||||| | |||||||| || || ||||| | || ||| ||| |||||
Sbjct: 7044331 gtgataccgaacgcctcagtcatgtcgagcttggtcgggtcggccatgccaggcacctcc 7044272
Query: 457 cagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgcc 516
|||||||||||||| || ||||||| ||| | |||||| |||||||| ||||||||||||
Sbjct: 7044271 cagtcgaagtggaagagcaggctggagagagggagctccacgttggcaagcccgaacgcc 7044212
Query: 517 atgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttg 576
|| || || ||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 7044211 atcccggggcacatccgccggccgccgccgaacggcaggagctcgaagtcggcgcccctg 7044152
Query: 577 aactccaccgcg 588
|| |||||||||
Sbjct: 7044151 aagtccaccgcg 7044140
Score = 151 bits (76), Expect = 7e-034
Identities = 241/294 (81%), Gaps = 9/294 (3%)
Strand = Plus / Minus
Query: 399 gatgccaaacgcctcggccatgtcgaactcggcggggtcagacacgccgggcgcctccca 458
|||||| |||||||| | |||||||| || || ||||| | || |||||| |||||||
Sbjct: 6998580 gatgccgaacgcctcagtcatgtcgagcttggtcgggtcggccattccgggcacctccca 6998521
Query: 459 gtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgccat 518
||| |||||||| || | ||||||||| | |||||| ||||||||||||||||||||||
Sbjct: 6998520 gtcaaagtggaagagcaagctggcgagagggagctccacgttggcgagcccgaacgccaa 6998461
Query: 519 gcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttgaa 578
|| || ||||||| ||||||||||||||||||||| |||||| |||||| |||||||||
Sbjct: 6998460 cccggggcacatccgccggccggcgccgaacggcagaagctcgtagtcggtgcccttgaa 6998401
Query: 579 ctccaccgcgctggc---ctcggcct---cgaaccgctcggggcggaactcctcggg--- 629
|||| |||| ||| |||| | | |||||||||| || ||||||||||||||
Sbjct: 6998400 atccaacgcggcggctggctcgccgtcgccgaaccgctccggccggaactcctcgggcga 6998341
Query: 630 gtcgcccggccagtacctgccgtcgcggcccagcgcccagacgttcaccagcac 683
| |||| |||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 6998340 gccgccaggccagtaccgcgggtcgcggccgatcgcccagacgttgaccagcac 6998287
Score = 131 bits (66), Expect = 6e-028
Identities = 159/190 (83%)
Strand = Plus / Minus
Query: 376 aggtcggccttccgtctcgcggtgatgccaaacgcctcggccatgtcgaactcggcgggg 435
|||||| |||| || | ||| |||||||| |||| ||||| |||||| | || ||| |||
Sbjct: 6961138 aggtcgcccttgcggcgcgccgtgatgcccaacgtctcggtcatgtccagcttggcaggg 6961079
Query: 436 tcagacacgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcg 495
|| | || | ||||| ||||||||||||||||||| || || |||||||||| ||||||
Sbjct: 6961078 tcggccatgtcgggcacctcccagtcgaagtggaaaagcagactggcgagcgtgagctca 6961019
Query: 496 acgttggcgagcccgaacgccatgcccggacacatcctccggccggcgccgaacggcagg 555
| |||||||||| | |||||||| || || ||||||| ||| |||||||||||||| |||
Sbjct: 6961018 atgttggcgagcgcaaacgccatcccggggcacatccgccgcccggcgccgaacggaagg 6960959
Query: 556 agctcgaagt 565
||||||||||
Sbjct: 6960958 agctcgaagt 6960949
Score = 121 bits (61), Expect = 6e-025
Identities = 172/209 (82%)
Strand = Plus / Minus
Query: 379 tcggccttccgtctcgcggtgatgccaaacgcctcggccatgtcgaactcggcggggtca 438
||||||||||| | || |||||||| ||||| || | |||||||| || ||| |||||
Sbjct: 7048086 tcggccttccgccgtgcagtgatgccgaacgcttctgtcatgtcgagcttggccgggtcg 7048027
Query: 439 gacacgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
| || ||||||| ||||||| || |||||||| || | ||||||||| | |||||| |||
Sbjct: 7048026 gccaagccgggcacctcccaatcaaagtggaaaagcaagctggcgagagggagctccacg 7047967
Query: 499 ttggcgagcccgaacgccatgcccggacacatcctccggccggcgccgaacggcaggagc 558
|||||||||||||||||||| || || ||||| | ||| || || || |||||||||| |
Sbjct: 7047966 ttggcgagcccgaacgccatccctgggcacattcgccgcccagcaccaaacggcaggaac 7047907
Query: 559 tcgaagtcggcgcccttgaactccaccgc 587
|||||||||| ||| |||| ||||||||
Sbjct: 7047906 tcgaagtcggttcccctgaagtccaccgc 7047878
Score = 107 bits (54), Expect = 9e-021
Identities = 111/130 (85%)
Strand = Plus / Minus
Query: 358 aggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggcc 417
|||| |||||| || || |||||| |||| || | ||| |||||||| ||||||||||||
Sbjct: 6971694 aggacggggcgtagcaggaggtcgcccttgcggcgcgctgtgatgcctaacgcctcggcc 6971635
Query: 418 atgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaagg 477
||||| |||| ||| ||||| | || ||||||| ||||||||||||||||||| || |||
Sbjct: 6971634 atgtccaacttggcagggtcggccatgccgggcacctcccagtcgaagtggaagagcagg 6971575
Query: 478 ctggcgagcg 487
||||||||||
Sbjct: 6971574 ctggcgagcg 6971565
Score = 105 bits (53), Expect = 3e-020
Identities = 116/137 (84%)
Strand = Plus / Plus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaa 512
|||||||||||||||||| || ||||| |||||| ||||||| | | |||||| ||||
Sbjct: 7116492 ctcccagtcgaagtggaagaggaggctcgcgagcccgagctccatgatggcgacggcgaa 7116551
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcc 572
|||| ||| || ||||||||||||||||| |||||||||| || ||||||||| | ||
Sbjct: 7116552 tgccacgccggggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccc 7116611
Query: 573 cttgaactccaccgcgc 589
|||||| ||||||||||
Sbjct: 7116612 cttgaagtccaccgcgc 7116628
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 650 cgtcgcggcccagcgcccagacgttcaccagcacggtggtgcccgcaggcacgtcgtagc 709
|||||||||| | |||||| |||||||| | ||| |||| |||||| || ||||||||||
Sbjct: 5484982 cgtcgcggccgatcgcccacacgttcacgaacaccgtggcgcccgccgggacgtcgtagc 5485041
Query: 710 c 710
|
Sbjct: 5485042 c 5485042
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 230 bits (116), Expect = 9e-058
Identities = 336/403 (83%), Gaps = 11/403 (2%)
Strand = Plus / Minus
Query: 362 tggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggccatgt 421
|||||||||| | |||||||||||||| | |||||||| ||||| |||| | |||||
Sbjct: 24739304 tggggcggagcgggaggtcggccttccggcgggcggtgataccaaatccctcagtcatgt 24739245
Query: 422 cgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaaggctgg 481
| ||||| |||||||| | |||| ||||||||||||||||||||||||| || ||||| |
Sbjct: 24739244 caaactcagcggggtcggccacgtcgggcgcctcccagtcgaagtggaatagcaggctag 24739185
Query: 482 cgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccggccgg 541
||||||||||||| |||||||||||||||||||||| || || ||||||| |||||| |
Sbjct: 24739184 cgagcgcgagctccacgttggcgagcccgaacgccaacccagggcacatccgccggccag 24739125
Query: 542 cgccgaacggcaggagctcgaagtcggcgcccttgaactccaccg-cgctg--gcctc-- 596
|||| ||||||||||||||||||||||||||| |||| ||||||| ||| | |||||
Sbjct: 24739124 cgccaaacggcaggagctcgaagtcggcgcccctgaaatccaccgccgcggccgcctctc 24739065
Query: 597 -ggcctcgaaccgctcggggcggaactcctcggg---gtcgcccggccagtacctgccgt 652
| | ||||||||||| || |||||||||||||| | |||| |||||||||| |||
Sbjct: 24739064 cgtcttcgaaccgctctggccggaactcctcgggcgagccgccgggccagtaccgctcgt 24739005
Query: 653 cgcggcccagcgcccagacgttcaccagcacggtggtgcc-cgcaggcacgtcgtagccc 711
||||||| | ||||||||||| |||||||| ||||| ||| ||||||||||||||
Sbjct: 24739004 cgcggccgattgcccagacgttgaccagcacctgcgtgccgcgc-ggcacgtcgtagccg 24738946
Query: 712 agcacgcgacgcggctcctgggactgccgcgggagcagcagcg 754
||||| || | ||||||| || ||| ||||| ||||||||||
Sbjct: 24738945 agcacccggcacggctcccggcactcacgcggcagcagcagcg 24738903
Score = 216 bits (109), Expect = 1e-053
Identities = 336/407 (82%), Gaps = 11/407 (2%)
Strand = Plus / Minus
Query: 358 aggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggcc 417
||||| || ||||| || |||| |||||| || | ||| |||||||| |||||||| | |
Sbjct: 24705644 aggattggacggagcaggaggttggccttgcggcgcgccgtgatgccgaacgcctctgtc 24705585
Query: 418 atgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaagg 477
||||||||||||| ||||||| ||| |||| ||||||||||||| |||||| || |||
Sbjct: 24705584 atgtcgaactcggtcgggtcagccacaccggaggcctcccagtcgatgtggaagagcagg 24705525
Query: 478 ctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccgg 537
|||||||| | |||||| ||||| |||| |||||||||||| || || ||||||| ||||
Sbjct: 24705524 ctggcgagtgggagctccacgtttgcgaacccgaacgccatcccggggcacatccgccgg 24705465
Query: 538 ccggcgccgaacggcaggagctcgaagtcggcgcccttgaactccaccgcgctg---gcc 594
||| ||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct: 24705464 ccgccgccgaacggcaggagctcgaagtcggcgcccttgaagtccaccgcggcggccgcc 24705405
Query: 595 tcggcct---cgaaccgctcggggcggaactcctcggg---gtcgcccggccagtacctg 648
||| | | |||||||||| || ||||||||||| || | |||| ||||||||||
Sbjct: 24705404 tcgccgtcgccgaaccgctccggccggaactcctccggcgagccgccgggccagtaccgc 24705345
Query: 649 ccgtcgcggcccagcgcccagacgttcaccagcacggtggtgcc-cgcaggcacgtcgta 707
|||||||||| | ||||||| ||||||||||||| | ||| ||| |||||||||||
Sbjct: 24705344 tcgtcgcggccgatcgcccaggcgttcaccagcacctgcgcgccgcgc-ggcacgtcgta 24705286
Query: 708 gcccagcacgcgacgcggctcctgggactgccgcgggagcagcagcg 754
||| ||||| || | ||||||| || ||| ||||||||||||||||
Sbjct: 24705285 gccgagcacccggcacggctcccggcactcgcgcgggagcagcagcg 24705239
Score = 167 bits (84), Expect = 1e-038
Identities = 165/192 (85%)
Strand = Plus / Minus
Query: 397 gtgatgccaaacgcctcggccatgtcgaactcggcggggtcagacacgccgggcgcctcc 456
||||| || |||||||| | |||||||| || || ||||| | || ||| ||| |||||
Sbjct: 24743068 gtgataccgaacgcctcagtcatgtcgagcttggtcgggtcggccatgccaggcacctcc 24743009
Query: 457 cagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgcc 516
|||||||||||||| || ||||||| ||| | |||||| |||||||| ||||||||||||
Sbjct: 24743008 cagtcgaagtggaagagcaggctggagagagggagctccacgttggcaagcccgaacgcc 24742949
Query: 517 atgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttg 576
|| || || ||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 24742948 atcccggggcacatccgccggccgccgccgaacggcaggagctcgaagtcggcgcccctg 24742889
Query: 577 aactccaccgcg 588
|| |||||||||
Sbjct: 24742888 aagtccaccgcg 24742877
Score = 151 bits (76), Expect = 7e-034
Identities = 241/294 (81%), Gaps = 9/294 (3%)
Strand = Plus / Minus
Query: 399 gatgccaaacgcctcggccatgtcgaactcggcggggtcagacacgccgggcgcctccca 458
|||||| |||||||| | |||||||| || || ||||| | || |||||| |||||||
Sbjct: 24697317 gatgccgaacgcctcagtcatgtcgagcttggtcgggtcggccattccgggcacctccca 24697258
Query: 459 gtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgccat 518
||| |||||||| || | ||||||||| | |||||| ||||||||||||||||||||||
Sbjct: 24697257 gtcaaagtggaagagcaagctggcgagagggagctccacgttggcgagcccgaacgccaa 24697198
Query: 519 gcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttgaa 578
|| || ||||||| ||||||||||||||||||||| |||||| |||||| |||||||||
Sbjct: 24697197 cccggggcacatccgccggccggcgccgaacggcagaagctcgtagtcggtgcccttgaa 24697138
Query: 579 ctccaccgcgctggc---ctcggcct---cgaaccgctcggggcggaactcctcggg--- 629
|||| |||| ||| |||| | | |||||||||| || ||||||||||||||
Sbjct: 24697137 atccaacgcggcggctggctcgccgtcgccgaaccgctccggccggaactcctcgggcga 24697078
Query: 630 gtcgcccggccagtacctgccgtcgcggcccagcgcccagacgttcaccagcac 683
| |||| |||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 24697077 gccgccaggccagtaccgcgggtcgcggccgatcgcccagacgttgaccagcac 24697024
Score = 131 bits (66), Expect = 6e-028
Identities = 159/190 (83%)
Strand = Plus / Minus
Query: 376 aggtcggccttccgtctcgcggtgatgccaaacgcctcggccatgtcgaactcggcgggg 435
|||||| |||| || | ||| |||||||| |||| ||||| |||||| | || ||| |||
Sbjct: 24659875 aggtcgcccttgcggcgcgccgtgatgcccaacgtctcggtcatgtccagcttggcaggg 24659816
Query: 436 tcagacacgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcg 495
|| | || | ||||| ||||||||||||||||||| || || |||||||||| ||||||
Sbjct: 24659815 tcggccatgtcgggcacctcccagtcgaagtggaaaagcagactggcgagcgtgagctca 24659756
Query: 496 acgttggcgagcccgaacgccatgcccggacacatcctccggccggcgccgaacggcagg 555
| |||||||||| | |||||||| || || ||||||| ||| |||||||||||||| |||
Sbjct: 24659755 atgttggcgagcgcaaacgccatcccggggcacatccgccgcccggcgccgaacggaagg 24659696
Query: 556 agctcgaagt 565
||||||||||
Sbjct: 24659695 agctcgaagt 24659686
Score = 121 bits (61), Expect = 6e-025
Identities = 172/209 (82%)
Strand = Plus / Minus
Query: 379 tcggccttccgtctcgcggtgatgccaaacgcctcggccatgtcgaactcggcggggtca 438
||||||||||| | || |||||||| ||||| || | |||||||| || ||| |||||
Sbjct: 24746823 tcggccttccgccgtgcagtgatgccgaacgcttctgtcatgtcgagcttggccgggtcg 24746764
Query: 439 gacacgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
| || ||||||| ||||||| || |||||||| || | ||||||||| | |||||| |||
Sbjct: 24746763 gccaagccgggcacctcccaatcaaagtggaaaagcaagctggcgagagggagctccacg 24746704
Query: 499 ttggcgagcccgaacgccatgcccggacacatcctccggccggcgccgaacggcaggagc 558
|||||||||||||||||||| || || ||||| | ||| || || || |||||||||| |
Sbjct: 24746703 ttggcgagcccgaacgccatccctgggcacattcgccgcccagcaccaaacggcaggaac 24746644
Query: 559 tcgaagtcggcgcccttgaactccaccgc 587
|||||||||| ||| |||| ||||||||
Sbjct: 24746643 tcgaagtcggttcccctgaagtccaccgc 24746615
Score = 107 bits (54), Expect = 9e-021
Identities = 111/130 (85%)
Strand = Plus / Minus
Query: 358 aggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggcc 417
|||| |||||| || || |||||| |||| || | ||| |||||||| ||||||||||||
Sbjct: 24670431 aggacggggcgtagcaggaggtcgcccttgcggcgcgctgtgatgcctaacgcctcggcc 24670372
Query: 418 atgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaagg 477
||||| |||| ||| ||||| | || ||||||| ||||||||||||||||||| || |||
Sbjct: 24670371 atgtccaacttggcagggtcggccatgccgggcacctcccagtcgaagtggaagagcagg 24670312
Query: 478 ctggcgagcg 487
||||||||||
Sbjct: 24670311 ctggcgagcg 24670302
Score = 105 bits (53), Expect = 3e-020
Identities = 116/137 (84%)
Strand = Plus / Plus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaa 512
|||||||||||||||||| || ||||| |||||| ||||||| | | |||||| ||||
Sbjct: 24815229 ctcccagtcgaagtggaagaggaggctcgcgagcccgagctccatgatggcgacggcgaa 24815288
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcc 572
|||| ||| || ||||||||||||||||| |||||||||| || ||||||||| | ||
Sbjct: 24815289 tgccacgccggggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccc 24815348
Query: 573 cttgaactccaccgcgc 589
|||||| ||||||||||
Sbjct: 24815349 cttgaagtccaccgcgc 24815365
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggca 553
||||||||| || || |||||||||||||||||||||||||
Sbjct: 12516816 cgccatgccggggcagatcctccggccggcgccgaacggca 12516856
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 650 cgtcgcggcccagcgcccagacgttcaccagcacggtggtgcccgcaggcacgtcgtagc 709
|||||||||| | |||||| |||||||| | ||| |||| |||||| || ||||||||||
Sbjct: 23183719 cgtcgcggccgatcgcccacacgttcacgaacaccgtggcgcccgccgggacgtcgtagc 23183778
Query: 710 c 710
|
Sbjct: 23183779 c 23183779
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 509 cgaacgccatgcccggacacatcctccggccggcgccgaacggca 553
||||||||||||| || ||| ||||| |||||||||||||||||
Sbjct: 8928911 cgaacgccatgccggggcaccccctcctgccggcgccgaacggca 8928955
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 230 bits (116), Expect = 9e-058
Identities = 336/403 (83%), Gaps = 11/403 (2%)
Strand = Plus / Minus
Query: 362 tggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggccatgt 421
|||||||||| | |||||||||||||| | |||||||| ||||| |||| | |||||
Sbjct: 25703404 tggggcggagcgggaggtcggccttccggcgggcggtgataccaaatccctcagtcatgt 25703345
Query: 422 cgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaaggctgg 481
| ||||| |||||||| | |||| ||||||||||||||||||||||||| || ||||| |
Sbjct: 25703344 caaactcagcggggtcggccacgtcgggcgcctcccagtcgaagtggaatagcaggctag 25703285
Query: 482 cgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccggccgg 541
||||||||||||| |||||||||||||||||||||| || || ||||||| |||||| |
Sbjct: 25703284 cgagcgcgagctccacgttggcgagcccgaacgccaacccagggcacatccgccggccag 25703225
Query: 542 cgccgaacggcaggagctcgaagtcggcgcccttgaactccaccg-cgctg--gcctc-- 596
|||| ||||||||||||||||||||||||||| |||| ||||||| ||| | |||||
Sbjct: 25703224 cgccaaacggcaggagctcgaagtcggcgcccctgaaatccaccgccgcggccgcctctc 25703165
Query: 597 -ggcctcgaaccgctcggggcggaactcctcggg---gtcgcccggccagtacctgccgt 652
| | ||||||||||| || |||||||||||||| | |||| |||||||||| |||
Sbjct: 25703164 cgtcttcgaaccgctctggccggaactcctcgggcgagccgccgggccagtaccgctcgt 25703105
Query: 653 cgcggcccagcgcccagacgttcaccagcacggtggtgcc-cgcaggcacgtcgtagccc 711
||||||| | ||||||||||| |||||||| ||||| ||| ||||||||||||||
Sbjct: 25703104 cgcggccgattgcccagacgttgaccagcacctgcgtgccgcgc-ggcacgtcgtagccg 25703046
Query: 712 agcacgcgacgcggctcctgggactgccgcgggagcagcagcg 754
||||| || | ||||||| || ||| ||||| ||||||||||
Sbjct: 25703045 agcacccggcacggctcccggcactcacgcggcagcagcagcg 25703003
Score = 216 bits (109), Expect = 1e-053
Identities = 336/407 (82%), Gaps = 11/407 (2%)
Strand = Plus / Minus
Query: 358 aggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggcc 417
||||| || ||||| || |||| |||||| || | ||| |||||||| |||||||| | |
Sbjct: 25690381 aggattggacggagcaggaggttggccttgcggcgcgccgtgatgccgaacgcctctgtc 25690322
Query: 418 atgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaagg 477
||||||||||||| ||||||| ||| |||| ||||||||||||| |||||| || |||
Sbjct: 25690321 atgtcgaactcggtcgggtcagccacaccggaggcctcccagtcgatgtggaagagcagg 25690262
Query: 478 ctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccgg 537
|||||||| | |||||| ||||| |||| |||||||||||| || || ||||||| ||||
Sbjct: 25690261 ctggcgagtgggagctccacgtttgcgaacccgaacgccatcccggggcacatccgccgg 25690202
Query: 538 ccggcgccgaacggcaggagctcgaagtcggcgcccttgaactccaccgcgctg---gcc 594
||| ||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct: 25690201 ccgccgccgaacggcaggagctcgaagtcggcgcccttgaagtccaccgcggcggccgcc 25690142
Query: 595 tcggcct---cgaaccgctcggggcggaactcctcggg---gtcgcccggccagtacctg 648
||| | | |||||||||| || ||||||||||| || | |||| ||||||||||
Sbjct: 25690141 tcgccgtcgccgaaccgctccggccggaactcctccggcgagccgccgggccagtaccgc 25690082
Query: 649 ccgtcgcggcccagcgcccagacgttcaccagcacggtggtgcc-cgcaggcacgtcgta 707
|||||||||| | ||||||| ||||||||||||| | ||| ||| |||||||||||
Sbjct: 25690081 tcgtcgcggccgatcgcccaggcgttcaccagcacctgcgcgccgcgc-ggcacgtcgta 25690023
Query: 708 gcccagcacgcgacgcggctcctgggactgccgcgggagcagcagcg 754
||| ||||| || | ||||||| || ||| ||||||||||||||||
Sbjct: 25690022 gccgagcacccggcacggctcccggcactcgcgcgggagcagcagcg 25689976
Score = 174 bits (88), Expect = 5e-041
Identities = 178/208 (85%)
Strand = Plus / Minus
Query: 358 aggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggcc 417
|||| |||||| || || |||||| |||| || | ||| |||||||| ||||||||||||
Sbjct: 25654479 aggacggggcgtagcaggaggtcgcccttgcggcgcgctgtgatgcctaacgcctcggcc 25654420
Query: 418 atgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaagg 477
||||| |||| ||| ||||| | || ||||||| ||||||||||||||||||| || |||
Sbjct: 25654419 atgtccaacttggcagggtcggccatgccgggcacctcccagtcgaagtggaagagcagg 25654360
Query: 478 ctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccgg 537
|||||||||| |||||||| |||||||||| ||||||||| || || ||||||| |||
Sbjct: 25654359 ctggcgagcgtgagctcgatgttggcgagcgcgaacgccaccccggggcacatccggcgg 25654300
Query: 538 ccggcgccgaacggcaggagctcgaagt 565
||||||||||| |||| |||||||||||
Sbjct: 25654299 ccggcgccgaatggcaagagctcgaagt 25654272
Score = 167 bits (84), Expect = 1e-038
Identities = 165/192 (85%)
Strand = Plus / Minus
Query: 397 gtgatgccaaacgcctcggccatgtcgaactcggcggggtcagacacgccgggcgcctcc 456
||||| || |||||||| | |||||||| || || ||||| | || ||| ||| |||||
Sbjct: 25707168 gtgataccgaacgcctcagtcatgtcgagcttggtcgggtcggccatgccaggcacctcc 25707109
Query: 457 cagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgcc 516
|||||||||||||| || ||||||| ||| | |||||| |||||||| ||||||||||||
Sbjct: 25707108 cagtcgaagtggaagagcaggctggagagagggagctccacgttggcaagcccgaacgcc 25707049
Query: 517 atgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttg 576
|| || || ||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 25707048 atcccggggcacatccgccggccgccgccgaacggcaggagctcgaagtcggcgcccctg 25706989
Query: 577 aactccaccgcg 588
|| |||||||||
Sbjct: 25706988 aagtccaccgcg 25706977
Score = 151 bits (76), Expect = 7e-034
Identities = 241/294 (81%), Gaps = 9/294 (3%)
Strand = Plus / Minus
Query: 399 gatgccaaacgcctcggccatgtcgaactcggcggggtcagacacgccgggcgcctccca 458
|||||| |||||||| | |||||||| || || ||||| | || |||||| |||||||
Sbjct: 25681639 gatgccgaacgcctcagtcatgtcgagcttggtcgggtcggccattccgggcacctccca 25681580
Query: 459 gtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgccat 518
||| |||||||| || | ||||||||| | |||||| ||||||||||||||||||||||
Sbjct: 25681579 gtcaaagtggaagagcaagctggcgagagggagctccacgttggcgagcccgaacgccaa 25681520
Query: 519 gcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttgaa 578
|| || ||||||| ||||||||||||||||||||| |||||| |||||| |||||||||
Sbjct: 25681519 cccggggcacatccgccggccggcgccgaacggcagaagctcgtagtcggtgcccttgaa 25681460
Query: 579 ctccaccgcgctggc---ctcggcct---cgaaccgctcggggcggaactcctcggg--- 629
|||| |||| ||| |||| | | |||||||||| || ||||||||||||||
Sbjct: 25681459 atccaacgcggcggctggctcgccgtcgccgaaccgctccggccggaactcctcgggcga 25681400
Query: 630 gtcgcccggccagtacctgccgtcgcggcccagcgcccagacgttcaccagcac 683
| |||| |||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 25681399 gccgccaggccagtaccgcgggtcgcggccgatcgcccagacgttgaccagcac 25681346
Score = 143 bits (72), Expect = 2e-031
Identities = 177/212 (83%)
Strand = Plus / Minus
Query: 354 gcggaggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctc 413
|||||||| |||||| || || |||||| |||| || | ||| |||||||| |||| |||
Sbjct: 25645370 gcggaggacggggcgtagcaggaggtcgcccttgcggcgcgccgtgatgcccaacgtctc 25645311
Query: 414 ggccatgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacag 473
|| |||||| | || ||| ||||| | || | ||||| ||||||||||||||||||| ||
Sbjct: 25645310 ggtcatgtccagcttggcagggtcggccatgtcgggcacctcccagtcgaagtggaaaag 25645251
Query: 474 aaggctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcct 533
|| |||||||||| |||||| | |||||||||| | |||||||| || || |||||||
Sbjct: 25645250 cagactggcgagcgtgagctcaatgttggcgagcgcaaacgccatcccggggcacatccg 25645191
Query: 534 ccggccggcgccgaacggcaggagctcgaagt 565
||| |||||||||||||| |||||||||||||
Sbjct: 25645190 ccgcccggcgccgaacggaaggagctcgaagt 25645159
Score = 121 bits (61), Expect = 6e-025
Identities = 172/209 (82%)
Strand = Plus / Minus
Query: 379 tcggccttccgtctcgcggtgatgccaaacgcctcggccatgtcgaactcggcggggtca 438
||||||||||| | || |||||||| ||||| || | |||||||| || ||| |||||
Sbjct: 25710923 tcggccttccgccgtgcagtgatgccgaacgcttctgtcatgtcgagcttggccgggtcg 25710864
Query: 439 gacacgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
| || ||||||| ||||||| || |||||||| || | ||||||||| | |||||| |||
Sbjct: 25710863 gccaagccgggcacctcccaatcaaagtggaaaagcaagctggcgagagggagctccacg 25710804
Query: 499 ttggcgagcccgaacgccatgcccggacacatcctccggccggcgccgaacggcaggagc 558
|||||||||||||||||||| || || ||||| | ||| || || || |||||||||| |
Sbjct: 25710803 ttggcgagcccgaacgccatccctgggcacattcgccgcccagcaccaaacggcaggaac 25710744
Query: 559 tcgaagtcggcgcccttgaactccaccgc 587
|||||||||| ||| |||| ||||||||
Sbjct: 25710743 tcgaagtcggttcccctgaagtccaccgc 25710715
Score = 105 bits (53), Expect = 3e-020
Identities = 116/137 (84%)
Strand = Plus / Plus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaa 512
|||||||||||||||||| || ||||| |||||| ||||||| | | |||||| ||||
Sbjct: 25776288 ctcccagtcgaagtggaagaggaggctcgcgagcccgagctccatgatggcgacggcgaa 25776347
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcc 572
|||| ||| || ||||||||||||||||| |||||||||| || ||||||||| | ||
Sbjct: 25776348 tgccacgccggggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccc 25776407
Query: 573 cttgaactccaccgcgc 589
|||||| ||||||||||
Sbjct: 25776408 cttgaagtccaccgcgc 25776424
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggca 553
||||||||| || || |||||||||||||||||||||||||
Sbjct: 12810525 cgccatgccggggcagatcctccggccggcgccgaacggca 12810565
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 650 cgtcgcggcccagcgcccagacgttcaccagcacggtggtgcccgcaggcacgtcgtagc 709
|||||||||| | |||||| |||||||| | ||| |||| |||||| || ||||||||||
Sbjct: 24148760 cgtcgcggccgatcgcccacacgttcacgaacaccgtggcgcccgccgggacgtcgtagc 24148819
Query: 710 c 710
|
Sbjct: 24148820 c 24148820
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 509 cgaacgccatgcccggacacatcctccggccggcgccgaacggca 553
||||||||||||| || ||| ||||| |||||||||||||||||
Sbjct: 8887053 cgaacgccatgccggggcaccccctcctgccggcgccgaacggca 8887097
>gb|AACV01014652.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014652, whole
genome shotgun sequence
Length = 11777
Score = 216 bits (109), Expect = 1e-053
Identities = 336/407 (82%), Gaps = 11/407 (2%)
Strand = Plus / Minus
Query: 358 aggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggcc 417
||||| || ||||| || |||| |||||| || | ||| |||||||| |||||||| | |
Sbjct: 7416 aggattggacggagcaggaggttggccttgcggcgcgccgtgatgccgaacgcctctgtc 7357
Query: 418 atgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaagg 477
||||||||||||| ||||||| ||| |||| ||||||||||||| |||||| || |||
Sbjct: 7356 atgtcgaactcggtcgggtcagccacaccggaggcctcccagtcgatgtggaagagcagg 7297
Query: 478 ctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccgg 537
|||||||| | |||||| ||||| |||| |||||||||||| || || ||||||| ||||
Sbjct: 7296 ctggcgagtgggagctccacgtttgcgaacccgaacgccatcccggggcacatccgccgg 7237
Query: 538 ccggcgccgaacggcaggagctcgaagtcggcgcccttgaactccaccgcgctg---gcc 594
||| ||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct: 7236 ccgccgccgaacggcaggagctcgaagtcggcgcccttgaagtccaccgcggcggccgcc 7177
Query: 595 tcggcct---cgaaccgctcggggcggaactcctcggg---gtcgcccggccagtacctg 648
||| | | |||||||||| || ||||||||||| || | |||| ||||||||||
Sbjct: 7176 tcgccgtcgccgaaccgctccggccggaactcctccggcgagccgccgggccagtaccgc 7117
Query: 649 ccgtcgcggcccagcgcccagacgttcaccagcacggtggtgcc-cgcaggcacgtcgta 707
|||||||||| | ||||||| ||||||||||||| | ||| ||| |||||||||||
Sbjct: 7116 tcgtcgcggccgatcgcccaggcgttcaccagcacctgcgcgccgcgc-ggcacgtcgta 7058
Query: 708 gcccagcacgcgacgcggctcctgggactgccgcgggagcagcagcg 754
||| ||||| || | ||||||| || ||| ||||||||||||||||
Sbjct: 7057 gccgagcacccggcacggctcccggcactcgcgcgggagcagcagcg 7011
>gb|AQ328148.1|AQ328148 nbxb0042D19f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0042D19f, DNA sequence
Length = 762
Score = 151 bits (76), Expect = 7e-034
Identities = 241/294 (81%), Gaps = 9/294 (3%)
Strand = Plus / Plus
Query: 399 gatgccaaacgcctcggccatgtcgaactcggcggggtcagacacgccgggcgcctccca 458
|||||| |||||||| | |||||||| || || ||||| | || |||||| |||||||
Sbjct: 156 gatgccgaacgcctcagtcatgtcgagcttggtcgggtcggccattccgggcacctccca 215
Query: 459 gtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgccat 518
||| |||||||| || | ||||||||| | |||||| ||||||||||||||||||||||
Sbjct: 216 gtcaaagtggaagagcaagctggcgagagggagctccacgttggcgagcccgaacgccaa 275
Query: 519 gcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttgaa 578
|| || ||||||| ||||||||||||||||||||| |||||| |||||| |||||||||
Sbjct: 276 cccggggcacatccgccggccggcgccgaacggcagaagctcgtagtcggtgcccttgaa 335
Query: 579 ctccaccgcgctggc---ctcggcct---cgaaccgctcggggcggaactcctcggg--- 629
|||| |||| ||| |||| | | |||||||||| || ||||||||||||||
Sbjct: 336 atccaacgcggcggctggctcgccgtcgccgaaccgctccggccggaactcctcgggcga 395
Query: 630 gtcgcccggccagtacctgccgtcgcggcccagcgcccagacgttcaccagcac 683
| |||| |||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 396 gccgccaggccagtaccgcgggtcgcggccgatcgcccagacgttgaccagcac 449
>gb|AACV01014651.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014651, whole
genome shotgun sequence
Length = 21610
Score = 151 bits (76), Expect = 7e-034
Identities = 241/294 (81%), Gaps = 9/294 (3%)
Strand = Plus / Minus
Query: 399 gatgccaaacgcctcggccatgtcgaactcggcggggtcagacacgccgggcgcctccca 458
|||||| |||||||| | |||||||| || || ||||| | || |||||| |||||||
Sbjct: 20749 gatgccgaacgcctcagtcatgtcgagcttggtcgggtcggccattccgggcacctccca 20690
Query: 459 gtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgccat 518
||| |||||||| || | ||||||||| | |||||| ||||||||||||||||||||||
Sbjct: 20689 gtcaaagtggaagagcaagctggcgagagggagctccacgttggcgagcccgaacgccaa 20630
Query: 519 gcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcccttgaa 578
|| || ||||||| ||||||||||||||||||||| |||||| |||||| |||||||||
Sbjct: 20629 cccggggcacatccgccggccggcgccgaacggcagaagctcgtagtcggtgcccttgaa 20570
Query: 579 ctccaccgcgctggc---ctcggcct---cgaaccgctcggggcggaactcctcggg--- 629
|||| |||| ||| |||| | | |||||||||| || ||||||||||||||
Sbjct: 20569 atccaacgcggcggctggctcgccgtcgccgaaccgctccggccggaactcctcgggcga 20510
Query: 630 gtcgcccggccagtacctgccgtcgcggcccagcgcccagacgttcaccagcac 683
| |||| |||||||||| ||||||||| | |||||||||||| ||||||||
Sbjct: 20509 gccgccaggccagtaccgcgggtcgcggccgatcgcccagacgttgaccagcac 20456
>dbj|AK060486.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E10, full
insert sequence
Length = 1815
Score = 143 bits (72), Expect = 2e-031
Identities = 177/212 (83%)
Strand = Plus / Minus
Query: 354 gcggaggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctc 413
|||||||| |||||| || || |||||| |||| || | ||| |||||||| |||| |||
Sbjct: 1597 gcggaggacggggcgtagcaggaggtcgcccttgcggcgcgccgtgatgcccaacgtctc 1538
Query: 414 ggccatgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacag 473
|| |||||| | || ||| ||||| | || | ||||| ||||||||||||||||||| ||
Sbjct: 1537 ggtcatgtccagcttggcagggtcggccatgtcgggcacctcccagtcgaagtggaaaag 1478
Query: 474 aaggctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcct 533
|| |||||||||| |||||| | |||||||||| | |||||||| || || |||||||
Sbjct: 1477 cagactggcgagcgtgagctcaatgttggcgagcgcaaacgccatcccggggcacatccg 1418
Query: 534 ccggccggcgccgaacggcaggagctcgaagt 565
||| |||||||||||||| |||||||||||||
Sbjct: 1417 ccgcccggcgccgaacggaaggagctcgaagt 1386
>dbj|AK106068.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H02, full
insert sequence
Length = 1775
Score = 143 bits (72), Expect = 2e-031
Identities = 177/212 (83%)
Strand = Plus / Minus
Query: 354 gcggaggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctc 413
|||||||| |||||| || || |||||| |||| || | ||| |||||||| |||| |||
Sbjct: 1583 gcggaggacggggcgtagcaggaggtcgcccttgcggcgcgccgtgatgcccaacgtctc 1524
Query: 414 ggccatgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacag 473
|| |||||| | || ||| ||||| | || | ||||| ||||||||||||||||||| ||
Sbjct: 1523 ggtcatgtccagcttggcagggtcggccatgtcgggcacctcccagtcgaagtggaaaag 1464
Query: 474 aaggctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcct 533
|| |||||||||| |||||| | |||||||||| | |||||||| || || |||||||
Sbjct: 1463 cagactggcgagcgtgagctcaatgttggcgagcgcaaacgccatcccggggcacatccg 1404
Query: 534 ccggccggcgccgaacggcaggagctcgaagt 565
||| |||||||||||||| |||||||||||||
Sbjct: 1403 ccgcccggcgccgaacggaaggagctcgaagt 1372
>gb|AACV01014648.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014648, whole
genome shotgun sequence
Length = 9315
Score = 131 bits (66), Expect = 6e-028
Identities = 159/190 (83%)
Strand = Plus / Plus
Query: 376 aggtcggccttccgtctcgcggtgatgccaaacgcctcggccatgtcgaactcggcgggg 435
|||||| |||| || | ||| |||||||| |||| ||||| |||||| | || ||| |||
Sbjct: 3292 aggtcgcccttgcggcgcgccgtgatgcccaacgtctcggtcatgtccagcttggcaggg 3351
Query: 436 tcagacacgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcg 495
|| | || | ||||| ||||||||||||||||||| || || |||||||||| ||||||
Sbjct: 3352 tcggccatgtcgggcacctcccagtcgaagtggaaaagcagactggcgagcgtgagctca 3411
Query: 496 acgttggcgagcccgaacgccatgcccggacacatcctccggccggcgccgaacggcagg 555
| |||||||||| | |||||||| || || ||||||| ||| |||||||||||||| |||
Sbjct: 3412 atgttggcgagcgcaaacgccatcccggggcacatccgccgcccggcgccgaacggaagg 3471
Query: 556 agctcgaagt 565
||||||||||
Sbjct: 3472 agctcgaagt 3481
>gb|AACV01003510.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003510, whole
genome shotgun sequence
Length = 18403
Score = 119 bits (60), Expect = 2e-024
Identities = 99/112 (88%)
Strand = Plus / Plus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| | |||||||||||
Sbjct: 5697 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaacgc 5756
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcg 567
|||||| || ||||||| |||||||||||||||||| | |||||||||||||
Sbjct: 5757 catgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtcg 5808
Score = 109 bits (55), Expect = 2e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct: 10168 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcgccagcccgaacgc 10227
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtc 566
|||||| || || ||||||| |||||||||||||| | ||||||||||||
Sbjct: 10228 catgccggggcagatcctcctcccggcgccgaacgggatgagctcgaagtc 10278
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 119 bits (60), Expect = 2e-024
Identities = 99/112 (88%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| | |||||||||||
Sbjct: 4905382 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaacgc 4905323
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcg 567
|||||| || ||||||| |||||||||||||||||| | |||||||||||||
Sbjct: 4905322 catgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtcg 4905271
Score = 109 bits (55), Expect = 2e-021
Identities = 97/111 (87%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct: 4900911 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcgccagcccgaacgc 4900852
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtc 566
|||||| || || ||||||| |||||||||||||| | ||||||||||||
Sbjct: 4900851 catgccggggcagatcctcctcccggcgccgaacgggatgagctcgaagtc 4900801
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 119 bits (60), Expect = 2e-024
Identities = 99/112 (88%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| | |||||||||||
Sbjct: 4905382 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaacgc 4905323
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcg 567
|||||| || ||||||| |||||||||||||||||| | |||||||||||||
Sbjct: 4905322 catgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtcg 4905271
Score = 109 bits (55), Expect = 2e-021
Identities = 97/111 (87%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct: 4900911 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcgccagcccgaacgc 4900852
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtc 566
|||||| || || ||||||| |||||||||||||| | ||||||||||||
Sbjct: 4900851 catgccggggcagatcctcctcccggcgccgaacgggatgagctcgaagtc 4900801
Score = 42.1 bits (21), Expect = 0.43
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 672 gttcaccagcacggtggtgcccgcaggcacgtcgtagccca 712
|||||| | |||||||||||| |||||||||||||||||
Sbjct: 23289856 gttcacaaacacggtggtgcctttaggcacgtcgtagccca 23289896
Score = 42.1 bits (21), Expect = 0.43
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
||||||||| || ||||||||||||||||
Sbjct: 15498473 gaaccgctcaggccggaactcctcggggt 15498501
>ref|XM_464380.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1572
Score = 117 bits (59), Expect = 9e-024
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| | |||||||||||
Sbjct: 1440 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaacgc 1381
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtc 566
|||||| || ||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 1380 catgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtc 1330
>ref|NT_107177.1| Oryza sativa (japonica cultivar-group)
Length = 1341590
Score = 117 bits (59), Expect = 9e-024
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| | |||||||||||
Sbjct: 202270 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaacgc 202211
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtc 566
|||||| || ||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 202210 catgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtc 202160
Score = 109 bits (55), Expect = 2e-021
Identities = 97/111 (87%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct: 197801 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcgccagcccgaacgc 197742
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtc 566
|||||| || || ||||||| |||||||||||||| | ||||||||||||
Sbjct: 197741 catgccggggcagatcctcctcccggcgccgaacgggatgagctcgaagtc 197691
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1073_F05
Length = 124252
Score = 117 bits (59), Expect = 9e-024
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| | |||||||||||
Sbjct: 72357 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaacgc 72298
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtc 566
|||||| || ||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 72297 catgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtc 72247
Score = 109 bits (55), Expect = 2e-021
Identities = 97/111 (87%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct: 67888 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcgccagcccgaacgc 67829
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtc 566
|||||| || || ||||||| |||||||||||||| | ||||||||||||
Sbjct: 67828 catgccggggcagatcctcctcccggcgccgaacgggatgagctcgaagtc 67778
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1115_B01
Length = 129329
Score = 117 bits (59), Expect = 9e-024
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| | |||||||||||
Sbjct: 110788 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaacgc 110729
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtc 566
|||||| || ||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 110728 catgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtc 110678
Score = 109 bits (55), Expect = 2e-021
Identities = 97/111 (87%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct: 106319 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcgccagcccgaacgc 106260
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtc 566
|||||| || || ||||||| |||||||||||||| | ||||||||||||
Sbjct: 106259 catgccggggcagatcctcctcccggcgccgaacgggatgagctcgaagtc 106209
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 117 bits (59), Expect = 9e-024
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| | |||||||||||
Sbjct: 4830198 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaacgc 4830139
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtc 566
|||||| || ||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 4830138 catgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtc 4830088
Score = 109 bits (55), Expect = 2e-021
Identities = 97/111 (87%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct: 4825729 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcgccagcccgaacgc 4825670
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtc 566
|||||| || || ||||||| |||||||||||||| | ||||||||||||
Sbjct: 4825669 catgccggggcagatcctcctcccggcgccgaacgggatgagctcgaagtc 4825619
Score = 42.1 bits (21), Expect = 0.43
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 672 gttcaccagcacggtggtgcccgcaggcacgtcgtagccca 712
|||||| | |||||||||||| |||||||||||||||||
Sbjct: 23551109 gttcacaaacacggtggtgcctttaggcacgtcgtagccca 23551149
Score = 42.1 bits (21), Expect = 0.43
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
||||||||| || ||||||||||||||||
Sbjct: 15836170 gaaccgctcaggccggaactcctcggggt 15836142
Score = 42.1 bits (21), Expect = 0.43
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
||||||||| || ||||||||||||||||
Sbjct: 15817096 gaaccgctcaggccggaactcctcggggt 15817124
>ref|XM_464378.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1530
Score = 109 bits (55), Expect = 2e-021
Identities = 97/111 (87%)
Strand = Plus / Minus
Query: 456 ccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaacgc 515
|||||||||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct: 1407 ccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcgccagcccgaacgc 1348
Query: 516 catgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtc 566
|||||| || || ||||||| |||||||||||||| | ||||||||||||
Sbjct: 1347 catgccggggcagatcctcctcccggcgccgaacgggatgagctcgaagtc 1297
>gb|AACV01014650.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014650, whole
genome shotgun sequence
Length = 8538
Score = 107 bits (54), Expect = 9e-021
Identities = 111/130 (85%)
Strand = Plus / Minus
Query: 358 aggatggggcggagtagcaggtcggccttccgtctcgcggtgatgccaaacgcctcggcc 417
|||| |||||| || || |||||| |||| || | ||| |||||||| ||||||||||||
Sbjct: 2501 aggacggggcgtagcaggaggtcgcccttgcggcgcgctgtgatgcctaacgcctcggcc 2442
Query: 418 atgtcgaactcggcggggtcagacacgccgggcgcctcccagtcgaagtggaacagaagg 477
||||| |||| ||| ||||| | || ||||||| ||||||||||||||||||| || |||
Sbjct: 2441 atgtccaacttggcagggtcggccatgccgggcacctcccagtcgaagtggaagagcagg 2382
Query: 478 ctggcgagcg 487
||||||||||
Sbjct: 2381 ctggcgagcg 2372
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0416A11
Length = 171519
Score = 105 bits (53), Expect = 3e-020
Identities = 116/137 (84%)
Strand = Plus / Plus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaa 512
|||||||||||||||||| || ||||| |||||| ||||||| | | |||||| ||||
Sbjct: 58492 ctcccagtcgaagtggaagaggaggctcgcgagcccgagctccatgatggcgacggcgaa 58551
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcc 572
|||| ||| || ||||||||||||||||| |||||||||| || ||||||||| | ||
Sbjct: 58552 tgccacgccggggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccc 58611
Query: 573 cttgaactccaccgcgc 589
|||||| ||||||||||
Sbjct: 58612 cttgaagtccaccgcgc 58628
>gb|AACV01014662.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014662, whole
genome shotgun sequence
Length = 16169
Score = 105 bits (53), Expect = 3e-020
Identities = 116/137 (84%)
Strand = Plus / Plus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttggcgagcccgaa 512
|||||||||||||||||| || ||||| |||||| ||||||| | | |||||| ||||
Sbjct: 9897 ctcccagtcgaagtggaagaggaggctcgcgagcccgagctccatgatggcgacggcgaa 9956
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggcaggagctcgaagtcggcgcc 572
|||| ||| || ||||||||||||||||| |||||||||| || ||||||||| | ||
Sbjct: 9957 tgccacgccggggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccc 10016
Query: 573 cttgaactccaccgcgc 589
|||||| ||||||||||
Sbjct: 10017 cttgaagtccaccgcgc 10033
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0416G11
Length = 138858
Score = 97.6 bits (49), Expect = 9e-018
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 443 cgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttgg 502
|||||||| |||||||||||||||| |||| ||| ||||||||||||||| | |||||
Sbjct: 1991 cgccgggcagctcccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttgg 2050
Query: 503 cgagcccgaacgccatgcccggacacatcctccggccggcgccgaacgg 551
| |||||||||||||| || || ||||| | ||| ||||||||||||||
Sbjct: 2051 ccagcccgaacgccatcccggggcacatacgccgcccggcgccgaacgg 2099
>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1111C09
Length = 156393
Score = 97.6 bits (49), Expect = 9e-018
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 443 cgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttgg 502
|||||||| |||||||||||||||| |||| ||| ||||||||||||||| | |||||
Sbjct: 121603 cgccgggcagctcccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttgg 121662
Query: 503 cgagcccgaacgccatgcccggacacatcctccggccggcgccgaacgg 551
| |||||||||||||| || || ||||| | ||| ||||||||||||||
Sbjct: 121663 ccagcccgaacgccatcccggggcacatacgccgcccggcgccgaacgg 121711
>gb|AACV01001144.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001144, whole
genome shotgun sequence
Length = 7261
Score = 97.6 bits (49), Expect = 9e-018
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 443 cgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttgg 502
|||||||| |||||||||||||||| |||| ||| ||||||||||||||| | |||||
Sbjct: 3467 cgccgggcagctcccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttgg 3526
Query: 503 cgagcccgaacgccatgcccggacacatcctccggccggcgccgaacgg 551
| |||||||||||||| || || ||||| | ||| ||||||||||||||
Sbjct: 3527 ccagcccgaacgccatcccggggcacatacgccgcccggcgccgaacgg 3575
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 97.6 bits (49), Expect = 9e-018
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 443 cgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttgg 502
|||||||| |||||||||||||||| |||| ||| ||||||||||||||| | |||||
Sbjct: 15561876 cgccgggcagctcccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttgg 15561935
Query: 503 cgagcccgaacgccatgcccggacacatcctccggccggcgccgaacgg 551
| |||||||||||||| || || ||||| | ||| ||||||||||||||
Sbjct: 15561936 ccagcccgaacgccatcccggggcacatacgccgcccggcgccgaacgg 15561984
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
|||||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 7052839 ctcccagtcgaagtggtacagcaggttggcgagcgccagctcgacg 7052794
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcga 496
|||||||||||||||| |||| ||| ||| |||||| |||||||
Sbjct: 7047199 ctcccagtcgaagtggtacagcaggttggtgagcgccagctcga 7047156
>ref|NM_193877.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1557
Score = 97.6 bits (49), Expect = 9e-018
Identities = 94/109 (86%)
Strand = Plus / Minus
Query: 443 cgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttgg 502
|||||||| |||||||||||||||| |||| ||| ||||||||||||||| | |||||
Sbjct: 1441 cgccgggcagctcccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttgg 1382
Query: 503 cgagcccgaacgccatgcccggacacatcctccggccggcgccgaacgg 551
| |||||||||||||| || || ||||| | ||| ||||||||||||||
Sbjct: 1381 ccagcccgaacgccatcccggggcacatacgccgcccggcgccgaacgg 1333
>ref|NT_079947.2| Oryza sativa (japonica cultivar-group)
Length = 1767736
Score = 97.6 bits (49), Expect = 9e-018
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 443 cgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttgg 502
|||||||| |||||||||||||||| |||| ||| ||||||||||||||| | |||||
Sbjct: 590341 cgccgggcagctcccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttgg 590400
Query: 503 cgagcccgaacgccatgcccggacacatcctccggccggcgccgaacgg 551
| |||||||||||||| || || ||||| | ||| ||||||||||||||
Sbjct: 590401 ccagcccgaacgccatcccggggcacatacgccgcccggcgccgaacgg 590449
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002 genomic
scaffold, whole genome shotgun sequence
Length = 5008528
Score = 97.6 bits (49), Expect = 9e-018
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 443 cgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttgg 502
|||||||| |||||||||||||||| |||| ||| ||||||||||||||| | |||||
Sbjct: 3978442 cgccgggcagctcccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttgg 3978501
Query: 503 cgagcccgaacgccatgcccggacacatcctccggccggcgccgaacgg 551
| |||||||||||||| || || ||||| | ||| ||||||||||||||
Sbjct: 3978502 ccagcccgaacgccatcccggggcacatacgccgcccggcgccgaacgg 3978550
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 97.6 bits (49), Expect = 9e-018
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 443 cgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttgg 502
|||||||| |||||||||||||||| |||| ||| ||||||||||||||| | |||||
Sbjct: 15594937 cgccgggcagctcccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttgg 15594996
Query: 503 cgagcccgaacgccatgcccggacacatcctccggccggcgccgaacgg 551
| |||||||||||||| || || ||||| | ||| ||||||||||||||
Sbjct: 15594997 ccagcccgaacgccatcccggggcacatacgccgcccggcgccgaacgg 15595045
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
|||||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 7133344 ctcccagtcgaagtggtacagcaggttggcgagcgccagctcgacg 7133299
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcga 496
|||||||||||||||| |||| ||| ||| |||||| |||||||
Sbjct: 7127704 ctcccagtcgaagtggtacagcaggttggtgagcgccagctcga 7127661
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 97.6 bits (49), Expect = 9e-018
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 443 cgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttgg 502
|||||||| |||||||||||||||| |||| ||| ||||||||||||||| | |||||
Sbjct: 15564094 cgccgggcagctcccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttgg 15564153
Query: 503 cgagcccgaacgccatgcccggacacatcctccggccggcgccgaacgg 551
| |||||||||||||| || || ||||| | ||| ||||||||||||||
Sbjct: 15564154 ccagcccgaacgccatcccggggcacatacgccgcccggcgccgaacgg 15564202
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
|||||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 7055057 ctcccagtcgaagtggtacagcaggttggcgagcgccagctcgacg 7055012
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcga 496
|||||||||||||||| |||| ||| ||| |||||| |||||||
Sbjct: 7049417 ctcccagtcgaagtggtacagcaggttggtgagcgccagctcga 7049374
>dbj|AK120987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042L02, full
insert sequence
Length = 1723
Score = 61.9 bits (31), Expect = 5e-007
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 475 aggctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctc 534
|||||||| ||||||||||||||| |||||||| ||||| ||| || || |||| | |
Sbjct: 1494 aggctggccagcgcgagctcgacggtggcgagcgcgaactgcatcccggggcacacgcgc 1435
Query: 535 cggccggcgccgaacggcaggagctcgaagt 565
|| |||||||||||||| | ||||| |||||
Sbjct: 1434 cgcccggcgccgaacgggacgagctggaagt 1404
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02,
complete sequence
Length = 125650
Score = 61.9 bits (31), Expect = 5e-007
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 475 aggctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctc 534
|||||||| ||||||||||||||| |||||||| ||||| ||| || || |||| | |
Sbjct: 70556 aggctggccagcgcgagctcgacggtggcgagcgcgaactgcatcccggggcacacgcgc 70615
Query: 535 cggccggcgccgaacggcaggagctcgaagt 565
|| |||||||||||||| | ||||| |||||
Sbjct: 70616 cgcccggcgccgaacgggacgagctggaagt 70646
>ref|NT_107212.1| Oryza sativa (japonica cultivar-group)
Length = 2712182
Score = 61.9 bits (31), Expect = 5e-007
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 475 aggctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctc 534
|||||||| ||||||||||||||| |||||||| ||||| ||| || || |||| | |
Sbjct: 1953880 aggctggccagcgcgagctcgacggtggcgagcgcgaactgcatcccggggcacacgcgc 1953939
Query: 535 cggccggcgccgaacggcaggagctcgaagt 565
|| |||||||||||||| | ||||| |||||
Sbjct: 1953940 cgcccggcgccgaacgggacgagctggaagt 1953970
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 61.9 bits (31), Expect = 5e-007
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 475 aggctggcgagcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctc 534
|||||||| ||||||||||||||| |||||||| ||||| ||| || || |||| | |
Sbjct: 20648516 aggctggccagcgcgagctcgacggtggcgagcgcgaactgcatcccggggcacacgcgc 20648575
Query: 535 cggccggcgccgaacggcaggagctcgaagt 565
|| |||||||||||||| | ||||| |||||
Sbjct: 20648576 cgcccggcgccgaacgggacgagctggaagt 20648606
>dbj|AK120914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034H03, full
insert sequence
Length = 1890
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
|||||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 1574 ctcccagtcgaagtggtacagcaggttggcgagcgccagctcgacg 1529
>gb|AACV01000499.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000499, whole
genome shotgun sequence
Length = 22362
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
|||||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 4876 ctcccagtcgaagtggtacagcaggttggcgagcgccagctcgacg 4921
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcga 496
|||||||||||||||| |||| ||| ||| |||||| |||||||
Sbjct: 10516 ctcccagtcgaagtggtacagcaggttggtgagcgccagctcga 10559
>ref|NM_188578.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1737
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
|||||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 1605 ctcccagtcgaagtggtacagcaggttggcgagcgccagctcgacg 1560
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
|||||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 7052679 ctcccagtcgaagtggtacagcaggttggcgagcgccagctcgacg 7052634
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcga 496
|||||||||||||||| |||| ||| ||| |||||| |||||||
Sbjct: 7047039 ctcccagtcgaagtggtacagcaggttggtgagcgccagctcga 7046996
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0452F10
Length = 145120
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
|||||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 42637 ctcccagtcgaagtggtacagcaggttggcgagcgccagctcgacg 42592
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcga 496
|||||||||||||||| |||| ||| ||| |||||| |||||||
Sbjct: 36997 ctcccagtcgaagtggtacagcaggttggtgagcgccagctcga 36954
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacg 498
|||||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 7133344 ctcccagtcgaagtggtacagcaggttggcgagcgccagctcgacg 7133299
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 453 ctcccagtcgaagtggaacagaaggctggcgagcgcgagctcga 496
|||||||||||||||| |||| ||| ||| |||||| |||||||
Sbjct: 7127704 ctcccagtcgaagtggtacagcaggttggtgagcgccagctcga 7127661
>gb|AQ870215.1|AQ870215 nbeb0036N08f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0036N08f, DNA sequence
Length = 754
Score = 58.0 bits (29), Expect = 7e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 443 cgccgggcgcctcccagtcgaagtggaacagaaggctggcgagcgcgagctcgacgttgg 502
|||||||| |||||||||||||||| |||| ||| ||||||||||||||| | |||||
Sbjct: 428 cgccgggcagctcccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttgg 487
Query: 503 c 503
|
Sbjct: 488 c 488
>dbj|AK110659.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-E12, full
insert sequence
Length = 1077
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggca 553
||||||||| || || |||||||||||||||||||||||||
Sbjct: 679 cgccatgccggggcagatcctccggccggcgccgaacggca 639
>dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0019A05
Length = 144255
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggca 553
||||||||| || || |||||||||||||||||||||||||
Sbjct: 111302 cgccatgccggggcagatcctccggccggcgccgaacggca 111342
>ref|NT_107237.1| Oryza sativa (japonica cultivar-group)
Length = 2924261
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggca 553
||||||||| || || |||||||||||||||||||||||||
Sbjct: 2274239 cgccatgccggggcagatcctccggccggcgccgaacggca 2274279
>gb|AACV01013783.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013783, whole
genome shotgun sequence
Length = 19050
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggca 553
||||||||| || || |||||||||||||||||||||||||
Sbjct: 5734 cgccatgccggggcagatcctccggccggcgccgaacggca 5694
>gb|CH401212.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000049 genomic
scaffold, whole genome shotgun sequence
Length = 3314418
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 513 cgccatgcccggacacatcctccggccggcgccgaacggca 553
||||||||| || || |||||||||||||||||||||||||
Sbjct: 1210695 cgccatgccggggcagatcctccggccggcgccgaacggca 1210735
>gb|CA755419.1|CA755419 BR030020000_PLATE_C01_3_004.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030020000_PLATE_C01_3_004.ab1 similar to cytochrome
P450 [Nepeta racemosa], mRNA sequence
Length = 614
Score = 52.0 bits (26), Expect = 5e-004
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 484 agcgcgagctcgacgttggcgagcccgaacgccatgcccggacacatcctccggccggcg 543
||||||||||||||| |||||||| ||||| ||| || || |||| | ||| ||||||
Sbjct: 610 agcgcgagctcgacggtggcgagcgcgaactgcatcccggggcacacgcgccgcccggcg 551
Query: 544 ccgaacggcaggagctcgaagt 565
|||||||| | ||||| |||||
Sbjct: 550 ccgaacgggacgagctggaagt 529
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 988,666
Number of Sequences: 438736
Number of extensions: 988666
Number of successful extensions: 6711
Number of sequences better than 0.5: 136
Number of HSP's better than 0.5 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5535
Number of HSP's gapped (non-prelim): 1152
length of query: 767
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 746
effective length of database: 2,791,206,460
effective search space: 2082240019160
effective search space used: 2082240019160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)