BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3588987.2.1
(487 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK108550.1| Oryza sativa (japonica cultivar-group) cDNA... 246 9e-063
ref|XM_473336.1| Oryza sativa (japonica cultivar-group), p... 228 2e-057
gb|AACV01010199.1| Oryza sativa (japonica cultivar-group) c... 117 6e-024
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 117 6e-024
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 117 6e-024
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 117 6e-024
emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromoso... 117 6e-024
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 117 6e-024
gb|CB646111.1|CB646111 OSJNEb08F02.r OSJNEb Oryza sativa (j... 100 1e-018
dbj|AK102431.1| Oryza sativa (japonica cultivar-group) cDNA... 100 1e-018
dbj|AK108496.1| Oryza sativa (japonica cultivar-group) cDNA... 100 1e-018
ref|XM_467013.1| Oryza sativa (japonica cultivar-group), mRNA 100 1e-018
gb|AU092316.2|AU092316 AU092316 Rice callus Oryza sativa (j... 88 5e-015
dbj|AK059659.1| Oryza sativa (japonica cultivar-group) cDNA... 88 5e-015
dbj|AP005291.3| Oryza sativa (japonica cultivar-group) geno... 88 5e-015
gb|AACV01005016.1| Oryza sativa (japonica cultivar-group) c... 88 5e-015
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 88 5e-015
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 88 5e-015
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 88 5e-015
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 88 5e-015
gb|AQ271754.1|AQ271754 nbxb0026L09r CUGI Rice BAC Library O... 86 2e-014
dbj|AG208077.1| Oryza sativa (japonica cultivar-group) DNA,... 86 2e-014
gb|CB663561.1|CB663561 OSJNEd08L01.r OSJNEd Oryza sativa (j... 84 8e-014
>dbj|AK108550.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E04, full
insert sequence
Length = 1963
Score = 246 bits (124), Expect = 9e-063
Identities = 264/311 (84%)
Strand = Plus / Minus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
||||||||||| || ||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 1826 gtctacttcatttggactatccctgcacttactagcttctggatcttctgcatcactccg 1767
Query: 237 gggttcttgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgc 296
||||||||||| |||||||| |||||| || |||||||| | || ||||| ||||||
Sbjct: 1766 gggttcttgagatgcgcctgagcagccttcggattctcctggaagtcggtcaacacctgc 1707
Query: 297 tgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgt 356
|||||||| ||||| |||| ||||||||||| || ||||| ||||| || |||||||||
Sbjct: 1706 tgcatgataggatccttcagaatgttctggatttctgggtcctgcatagccttgttctgt 1647
Query: 357 ctctctttcagttcctcctcactgagttcgcctctgctcgccttggtgatctgttcaaca 416
|| |||| || |||||||| || ||||| |||||||| |||||| ||||| | | |||
Sbjct: 1646 ctttcttgcaattcctcctggctcagttcccctctgctagccttgttgatccgctggaca 1587
Query: 417 cacctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttga 476
|| ||||| ||||||||||| ||||||||||| |||||| ||||||||| ||| || |||
Sbjct: 1586 catctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaagccggcctga 1527
Query: 477 taagtttccag 487
|| ||||||||
Sbjct: 1526 taggtttccag 1516
>ref|XM_473336.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2241
Score = 228 bits (115), Expect = 2e-057
Identities = 237/278 (85%)
Strand = Plus / Minus
Query: 210 agcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgaggg 269
|||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct: 2228 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 2169
Query: 270 ttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggatc 329
|||||||| | || ||||| |||||||||||||| ||||| |||| |||||||||||
Sbjct: 2168 ttctcctggaagtcggtcaacacctgctgcatgataggatccttcagaatgttctggatt 2109
Query: 330 tcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcct 389
|| ||||| ||||| || ||||||||||| |||| || |||||||| || ||||| |||
Sbjct: 2108 tctgggtcctgcatagccttgttctgtctttcttgcaattcctcctggctcagttcccct 2049
Query: 390 ctgctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggttt 449
||||| |||||| ||||| | | ||||| ||||| ||||||||||| |||||||||||
Sbjct: 2048 ctgctagccttgttgatccgctggacacatctcctaacaccatcaagcaactcctggttg 1989
Query: 450 ttcgggncatgctttaggccagcttgataagtttccag 487
|||||| ||||||||||||| || ||||| ||||||||
Sbjct: 1988 ttcgggtcatgctttaggccggcctgataggtttccag 1951
>gb|AACV01010199.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010199, whole
genome shotgun sequence
Length = 11181
Score = 117 bits (59), Expect = 6e-024
Identities = 80/87 (91%)
Strand = Plus / Minus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
||||||||||| || ||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 6295 gtctacttcatttggactatccctgcacttactagcttctggatcttctgcatcactccg 6236
Query: 237 gggttcttgaggtgcgcctgcgcagcc 263
||||||||||| |||||||| ||||||
Sbjct: 6235 gggttcttgagatgcgcctgagcagcc 6209
Score = 85.7 bits (43), Expect = 2e-014
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
||||||| ||||||||||| ||||||||||| |||||| ||||||||||||| || ||||
Sbjct: 5419 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 5360
Query: 478 aagtttccag 487
| ||||||||
Sbjct: 5359 aggtttccag 5350
Score = 58.0 bits (29), Expect = 5e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 291 acctgctgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttg 350
|||||||||||||| ||||| |||| ||||||||||| || ||||| ||||| || |||
Sbjct: 6089 acctgctgcatgataggatccttcagaatgttctggatttctgggtcctgcatagccttg 6030
Query: 351 ttctg 355
|||||
Sbjct: 6029 ttctg 6025
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 117 bits (59), Expect = 6e-024
Identities = 80/87 (91%)
Strand = Plus / Minus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
||||||||||| || ||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 666555 gtctacttcatttggactatccctgcacttactagcttctggatcttctgcatcactccg 666496
Query: 237 gggttcttgaggtgcgcctgcgcagcc 263
||||||||||| |||||||| ||||||
Sbjct: 666495 gggttcttgagatgcgcctgagcagcc 666469
Score = 85.7 bits (43), Expect = 2e-014
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
||||||| ||||||||||| ||||||||||| |||||| ||||||||||||| || ||||
Sbjct: 665679 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 665620
Query: 478 aagtttccag 487
| ||||||||
Sbjct: 665619 aggtttccag 665610
Score = 58.0 bits (29), Expect = 5e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 291 acctgctgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttg 350
|||||||||||||| ||||| |||| ||||||||||| || ||||| ||||| || |||
Sbjct: 666349 acctgctgcatgataggatccttcagaatgttctggatttctgggtcctgcatagccttg 666290
Query: 351 ttctg 355
|||||
Sbjct: 666289 ttctg 666285
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 117 bits (59), Expect = 6e-024
Identities = 80/87 (91%)
Strand = Plus / Minus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
||||||||||| || ||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 4711268 gtctacttcatttggactatccctgcacttactagcttctggatcttctgcatcactccg 4711209
Query: 237 gggttcttgaggtgcgcctgcgcagcc 263
||||||||||| |||||||| ||||||
Sbjct: 4711208 gggttcttgagatgcgcctgagcagcc 4711182
Score = 85.7 bits (43), Expect = 2e-014
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
||||||| ||||||||||| ||||||||||| |||||| ||||||||||||| || ||||
Sbjct: 4710392 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 4710333
Query: 478 aagtttccag 487
| ||||||||
Sbjct: 4710332 aggtttccag 4710323
Score = 58.0 bits (29), Expect = 5e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 291 acctgctgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttg 350
|||||||||||||| ||||| |||| ||||||||||| || ||||| ||||| || |||
Sbjct: 4711062 acctgctgcatgataggatccttcagaatgttctggatttctgggtcctgcatagccttg 4711003
Query: 351 ttctg 355
|||||
Sbjct: 4711002 ttctg 4710998
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 117 bits (59), Expect = 6e-024
Identities = 80/87 (91%)
Strand = Plus / Minus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
||||||||||| || ||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 23855367 gtctacttcatttggactatccctgcacttactagcttctggatcttctgcatcactccg 23855308
Query: 237 gggttcttgaggtgcgcctgcgcagcc 263
||||||||||| |||||||| ||||||
Sbjct: 23855307 gggttcttgagatgcgcctgagcagcc 23855281
Score = 85.7 bits (43), Expect = 2e-014
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
||||||| ||||||||||| ||||||||||| |||||| ||||||||||||| || ||||
Sbjct: 23854491 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 23854432
Query: 478 aagtttccag 487
| ||||||||
Sbjct: 23854431 aggtttccag 23854422
Score = 58.0 bits (29), Expect = 5e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 291 acctgctgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttg 350
|||||||||||||| ||||| |||| ||||||||||| || ||||| ||||| || |||
Sbjct: 23855161 acctgctgcatgataggatccttcagaatgttctggatttctgggtcctgcatagccttg 23855102
Query: 351 ttctg 355
|||||
Sbjct: 23855101 ttctg 23855097
>emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091D06,
complete sequence
Length = 174570
Score = 117 bits (59), Expect = 6e-024
Identities = 80/87 (91%)
Strand = Plus / Minus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
||||||||||| || ||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 111071 gtctacttcatttggactatccctgcacttactagcttctggatcttctgcatcactccg 111012
Query: 237 gggttcttgaggtgcgcctgcgcagcc 263
||||||||||| |||||||| ||||||
Sbjct: 111011 gggttcttgagatgcgcctgagcagcc 110985
Score = 85.7 bits (43), Expect = 2e-014
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
||||||| ||||||||||| ||||||||||| |||||| ||||||||||||| || ||||
Sbjct: 110195 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 110136
Query: 478 aagtttccag 487
| ||||||||
Sbjct: 110135 aggtttccag 110126
Score = 58.0 bits (29), Expect = 5e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 291 acctgctgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttg 350
|||||||||||||| ||||| |||| ||||||||||| || ||||| ||||| || |||
Sbjct: 110865 acctgctgcatgataggatccttcagaatgttctggatttctgggtcctgcatagccttg 110806
Query: 351 ttctg 355
|||||
Sbjct: 110805 ttctg 110801
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 117 bits (59), Expect = 6e-024
Identities = 80/87 (91%)
Strand = Plus / Minus
Query: 177 gtctacttcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccg 236
||||||||||| || ||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 26890011 gtctacttcatttggactatccctgcacttactagcttctggatcttctgcatcactccg 26889952
Query: 237 gggttcttgaggtgcgcctgcgcagcc 263
||||||||||| |||||||| ||||||
Sbjct: 26889951 gggttcttgagatgcgcctgagcagcc 26889925
Score = 85.7 bits (43), Expect = 2e-014
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
||||||| ||||||||||| ||||||||||| |||||| ||||||||||||| || ||||
Sbjct: 26889135 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 26889076
Query: 478 aagtttccag 487
| ||||||||
Sbjct: 26889075 aggtttccag 26889066
Score = 58.0 bits (29), Expect = 5e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 291 acctgctgcatgatcggatcagtcaggatgttctggatctcagggtcttgcatggctttg 350
|||||||||||||| ||||| |||| ||||||||||| || ||||| ||||| || |||
Sbjct: 26889805 acctgctgcatgataggatccttcagaatgttctggatttctgggtcctgcatagccttg 26889746
Query: 351 ttctg 355
|||||
Sbjct: 26889745 ttctg 26889741
>gb|CB646111.1|CB646111 OSJNEb08F02.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08F02 3', mRNA sequence
Length = 847
Score = 99.6 bits (50), Expect = 1e-018
Identities = 143/174 (82%)
Strand = Plus / Plus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| |||||||| || ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct: 268 tcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggttct 327
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| || ||| |||| | ||||| |||||||||||||| ||| || ||||| ||||||
Sbjct: 328 taagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgcatga 387
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtc 357
| ||||| || || || ||||||||||| || || ||||| || ||||||||||
Sbjct: 388 tgggatctgtaagaatattctggatctctggatcctgcatagccttgttctgtc 441
>dbj|AK102431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093H17, full
insert sequence
Length = 2113
Score = 99.6 bits (50), Expect = 1e-018
Identities = 143/174 (82%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| |||||||| || ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct: 1851 tcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggttct 1792
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| || ||| |||| | ||||| |||||||||||||| ||| || ||||| ||||||
Sbjct: 1791 taagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgcatga 1732
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtc 357
| ||||| || || || ||||||||||| || || ||||| || ||||||||||
Sbjct: 1731 tgggatctgtaagaatattctggatctctggatcctgcatagccttgttctgtc 1678
>dbj|AK108496.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G10, full
insert sequence
Length = 871
Score = 99.6 bits (50), Expect = 1e-018
Identities = 83/94 (88%)
Strand = Plus / Minus
Query: 210 agcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgaggg 269
|||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct: 94 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 35
Query: 270 ttctcctgcagatccgtcaaaacctgctgcatga 303
|||||||| | || ||||| |||||||||||||
Sbjct: 34 ttctcctggaagtcggtcaacacctgctgcatga 1
>ref|XM_467013.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2113
Score = 99.6 bits (50), Expect = 1e-018
Identities = 143/174 (82%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| |||||||| || ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct: 1851 tcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggttct 1792
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| || ||| |||| | ||||| |||||||||||||| ||| || ||||| ||||||
Sbjct: 1791 taagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgcatga 1732
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtc 357
| ||||| || || || ||||||||||| || || ||||| || ||||||||||
Sbjct: 1731 tgggatctgtaagaatattctggatctctggatcctgcatagccttgttctgtc 1678
>gb|AU092316.2|AU092316 AU092316 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12349, mRNA sequence
Length = 381
Score = 87.7 bits (44), Expect = 5e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| |||||||| || ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct: 106 tcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggttct 47
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgca 279
| || ||| |||| | ||||| ||||||||||||||
Sbjct: 46 taagatgctcctgagaagccctagggttctcctgca 11
>dbj|AK059659.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D09, full
insert sequence
Length = 418
Score = 87.7 bits (44), Expect = 5e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| |||||||| || ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct: 136 tcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggttct 77
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgca 279
| || ||| |||| | ||||| ||||||||||||||
Sbjct: 76 taagatgctcctgagaagccctagggttctcctgca 41
>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_H11
Length = 143314
Score = 87.7 bits (44), Expect = 5e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| |||||||| || ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct: 69444 tcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggttct 69385
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgca 279
| || ||| |||| | ||||| ||||||||||||||
Sbjct: 69384 taagatgctcctgagaagccctagggttctcctgca 69349
>gb|AACV01005016.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005016, whole
genome shotgun sequence
Length = 29067
Score = 87.7 bits (44), Expect = 5e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| |||||||| || ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct: 23666 tcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggttct 23607
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgca 279
| || ||| |||| | ||||| ||||||||||||||
Sbjct: 23606 taagatgctcctgagaagccctagggttctcctgca 23571
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 87.7 bits (44), Expect = 5e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| |||||||| || ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct: 1083102 tcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggttct 1083043
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgca 279
| || ||| |||| | ||||| ||||||||||||||
Sbjct: 1083042 taagatgctcctgagaagccctagggttctcctgca 1083007
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 87.7 bits (44), Expect = 5e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| |||||||| || ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct: 12296031 tcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggttct 12295972
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgca 279
| || ||| |||| | ||||| ||||||||||||||
Sbjct: 12295971 taagatgctcctgagaagccctagggttctcctgca 12295936
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 87.7 bits (44), Expect = 5e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| |||||||| || ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct: 25749095 tcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggttct 25749036
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgca 279
| || ||| |||| | ||||| ||||||||||||||
Sbjct: 25749035 taagatgctcctgagaagccctagggttctcctgca 25749000
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 87.7 bits (44), Expect = 5e-015
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| |||||||| || ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct: 25918103 tcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggttct 25918044
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgca 279
| || ||| |||| | ||||| ||||||||||||||
Sbjct: 25918043 taagatgctcctgagaagccctagggttctcctgca 25918008
>gb|AQ271754.1|AQ271754 nbxb0026L09r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0026L09r, DNA sequence
Length = 837
Score = 85.7 bits (43), Expect = 2e-014
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
||||||| ||||||||||| ||||||||||| |||||| ||||||||||||| || ||||
Sbjct: 249 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 190
Query: 478 aagtttccag 487
| ||||||||
Sbjct: 189 aggtttccag 180
>dbj|AG208077.1| Oryza sativa (japonica cultivar-group) DNA, clone:T12882T, 3'
flanking sequence of Tos17 insertion in rice strain
NE1501, genomic survey sequence
Length = 730
Score = 85.7 bits (43), Expect = 2e-014
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 418 acctccttacaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgat 477
||||||| ||||||||||| ||||||||||| |||||| ||||||||||||| || ||||
Sbjct: 171 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 230
Query: 478 aagtttccag 487
| ||||||||
Sbjct: 231 aggtttccag 240
>gb|CB663561.1|CB663561 OSJNEd08L01.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08L01 3', mRNA sequence
Length = 746
Score = 83.8 bits (42), Expect = 8e-014
Identities = 141/174 (81%)
Strand = Plus / Plus
Query: 184 tcatctgaactatccctgcgctgacgagcttctggatcttctgcatcactccggggttct 243
|||| |||||||| || ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct: 129 tcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggttct 188
Query: 244 tgaggtgcgcctgcgcagcccgagggttctcctgcagatccgtcaaaacctgctgcatga 303
| || ||| |||| ||||| |||||||||||||| ||| || ||||| ||||||
Sbjct: 189 taagatgctcctgaaaagccctagggttctcctgcaaatcgaccagtacctgtcgcatga 248
Query: 304 tcggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtc 357
| ||||| || | || ||||||||||| || || ||||| || ||||||||||
Sbjct: 249 tgggatctgtaaaaatattctggatctctggatcctgcatagccttgttctgtc 302
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 533,843
Number of Sequences: 438736
Number of extensions: 533843
Number of successful extensions: 9525
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9361
Number of HSP's gapped (non-prelim): 160
length of query: 487
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 466
effective length of database: 2,791,206,460
effective search space: 1300702210360
effective search space used: 1300702210360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)