BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3562100.2.1
(759 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB653924.1|CB653924 OSJNEc05G06.r OSJNEc Oryza sativa (j... 268 4e-069
dbj|AK059283.1| Oryza sativa (japonica cultivar-group) cDNA... 268 4e-069
dbj|AK121867.1| Oryza sativa (japonica cultivar-group) cDNA... 268 4e-069
ref|XM_475304.1| Oryza sativa (japonica cultivar-group), p... 268 4e-069
gb|CA999153.1|CA999153 S234N_C11 Rice cold stress germinati... 260 1e-066
gb|C99208.1|C99208 C99208 Rice panicle at ripening stage Or... 226 1e-056
gb|CB679715.1|CB679715 OSJNEf03J03.f OSJNEf Oryza sativa (j... 200 8e-049
gb|CB685153.1|CB685153 OSJNEf15F10.f OSJNEf Oryza sativa (j... 200 8e-049
dbj|AK061366.1| Oryza sativa (japonica cultivar-group) cDNA... 200 8e-049
dbj|AK121441.1| Oryza sativa (japonica cultivar-group) cDNA... 200 8e-049
ref|NM_190765.1| Oryza sativa (japonica cultivar-group), p... 200 8e-049
gb|CF323560.1|CF323560 HDN--04-C19.g1 OsHDAC1-overexpressin... 184 5e-044
gb|AACV01012264.1| Oryza sativa (japonica cultivar-group) c... 115 4e-023
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 115 4e-023
gb|AC105318.4| Oryza sativa (japonica cultivar-group) chrom... 115 4e-023
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 115 4e-023
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 115 4e-023
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 115 4e-023
gb|CF326437.1|CF326437 JMT1--06-A24.g1 AtJMT-overexpressing... 103 1e-019
gb|AU077950.1|AU077950 AU077950 Rice callus Oryza sativa (j... 100 2e-018
gb|C97539.1|C97539 C97539 Rice callus Oryza sativa (japonic... 94 1e-016
gb|C97538.1|C97538 C97538 Rice callus Oryza sativa (japonic... 86 3e-014
gb|CF309705.1|CF309705 ABF--03-P22.g1 ABF3-overexpressing t... 84 1e-013
gb|CB653923.1|CB653923 OSJNEc05G06.f OSJNEc Oryza sativa (j... 82 5e-013
gb|AU094034.1|AU094034 AU094034 Rice panicle at flowering s... 76 3e-011
gb|AACV01002753.1| Oryza sativa (japonica cultivar-group) c... 76 3e-011
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 76 3e-011
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 76 3e-011
dbj|AP003286.3| Oryza sativa (japonica cultivar-group) geno... 76 3e-011
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 76 3e-011
gb|AC137758.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|AACV01007748.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17... 56 3e-005
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AK059220.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AC108499.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AACV01012610.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NT_107218.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|AU030028.1|AU030028 AU030028 Rice cDNA from immature lea... 44 0.11
gb|AU030027.1|AU030027 AU030027 Rice cDNA from immature lea... 42 0.43
gb|AC108760.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
dbj|AP004138.1| Oryza sativa (japonica cultivar-group) chro... 42 0.43
dbj|AK071119.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.43
gb|AC108755.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
dbj|AP006756.2| Oryza sativa (japonica cultivar-group) geno... 42 0.43
ref|NT_107075.1| Oryza sativa (japonica cultivar-group) 42 0.43
gb|AACV01001874.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01003836.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
dbj|AP005428.2| Oryza sativa (japonica cultivar-group) geno... 42 0.43
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 42 0.43
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.43
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 42 0.43
>gb|CB653924.1|CB653924 OSJNEc05G06.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05G06 3', mRNA sequence
Length = 788
Score = 268 bits (135), Expect = 4e-069
Identities = 222/251 (88%)
Strand = Plus / Minus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 565 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttggattc 506
Query: 108 ataacatcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttat 167
|||||||| || ||| | |||||||| |||||||||||||||||| |||| ||||| |||
Sbjct: 505 ataacatcgacgatgatccttcagactgacaaaggtgatgaagaactgtgcagtgtatat 446
Query: 168 gtgccaaccaatcatttatatattggtgacatctttttggtaaactccgccgaaattata 227
||||||||||||||| ||||||| ||||||||||| ||||| | || | || ||||||
Sbjct: 445 gtgccaaccaatcatctatatatcggtgacatcttcttggttaggtctgaggagattata 386
Query: 228 aggcccaatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatg 287
||||| |||||||| ||||| ||||| |||||||| |||||||| ||||||||||| |||
Sbjct: 385 aggccgaatttgtccattcgagaagggatagaaatcattgtttctggaggaatgaccatg 326
Query: 288 ccgcaggtgat 298
|||||||||||
Sbjct: 325 ccgcaggtgat 315
>dbj|AK059283.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D06, full
insert sequence
Length = 1253
Score = 268 bits (135), Expect = 4e-069
Identities = 222/251 (88%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 657 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttggattc 716
Query: 108 ataacatcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttat 167
|||||||| || ||| | |||||||| |||||||||||||||||| |||| ||||| |||
Sbjct: 717 ataacatcgacgatgatccttcagactgacaaaggtgatgaagaactgtgcagtgtatat 776
Query: 168 gtgccaaccaatcatttatatattggtgacatctttttggtaaactccgccgaaattata 227
||||||||||||||| ||||||| ||||||||||| ||||| | || | || ||||||
Sbjct: 777 gtgccaaccaatcatctatatatcggtgacatcttcttggttaggtctgaggagattata 836
Query: 228 aggcccaatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatg 287
||||| |||||||| ||||| ||||| |||||||| |||||||| ||||||||||| |||
Sbjct: 837 aggccgaatttgtccattcgagaagggatagaaatcattgtttctggaggaatgaccatg 896
Query: 288 ccgcaggtgat 298
|||||||||||
Sbjct: 897 ccgcaggtgat 907
>dbj|AK121867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103I02, full
insert sequence
Length = 1424
Score = 268 bits (135), Expect = 4e-069
Identities = 222/251 (88%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 837 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttggattc 896
Query: 108 ataacatcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttat 167
|||||||| || ||| | |||||||| |||||||||||||||||| |||| ||||| |||
Sbjct: 897 ataacatcgacgatgatccttcagactgacaaaggtgatgaagaactgtgcagtgtatat 956
Query: 168 gtgccaaccaatcatttatatattggtgacatctttttggtaaactccgccgaaattata 227
||||||||||||||| ||||||| ||||||||||| ||||| | || | || ||||||
Sbjct: 957 gtgccaaccaatcatctatatatcggtgacatcttcttggttaggtctgaggagattata 1016
Query: 228 aggcccaatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatg 287
||||| |||||||| ||||| ||||| |||||||| |||||||| ||||||||||| |||
Sbjct: 1017 aggccgaatttgtccattcgagaagggatagaaatcattgtttctggaggaatgaccatg 1076
Query: 288 ccgcaggtgat 298
|||||||||||
Sbjct: 1077 ccgcaggtgat 1087
>ref|XM_475304.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 783
Score = 268 bits (135), Expect = 4e-069
Identities = 222/251 (88%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 466 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttggattc 525
Query: 108 ataacatcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttat 167
|||||||| || ||| | |||||||| |||||||||||||||||| |||| ||||| |||
Sbjct: 526 ataacatcgacgatgatccttcagactgacaaaggtgatgaagaactgtgcagtgtatat 585
Query: 168 gtgccaaccaatcatttatatattggtgacatctttttggtaaactccgccgaaattata 227
||||||||||||||| ||||||| ||||||||||| ||||| | || | || ||||||
Sbjct: 586 gtgccaaccaatcatctatatatcggtgacatcttcttggttaggtctgaggagattata 645
Query: 228 aggcccaatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatg 287
||||| |||||||| ||||| ||||| |||||||| |||||||| ||||||||||| |||
Sbjct: 646 aggccgaatttgtccattcgagaagggatagaaatcattgtttctggaggaatgaccatg 705
Query: 288 ccgcaggtgat 298
|||||||||||
Sbjct: 706 ccgcaggtgat 716
>gb|CA999153.1|CA999153 S234N_C11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 676
Score = 260 bits (131), Expect = 1e-066
Identities = 221/251 (88%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 204 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttggattc 263
Query: 108 ataacatcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttat 167
|||||||| || ||| | |||||||| |||||||||||||||||| |||| ||||| |||
Sbjct: 264 ataacatcgacgatgatccttcagactgacaaaggtgatgaagaactgtgcagtgtatat 323
Query: 168 gtgccaaccaatcatttatatattggtgacatctttttggtaaactccgccgaaattata 227
||||||||||||||| ||||||| ||||||||||| ||||| | || | || ||||||
Sbjct: 324 gtgccaaccaatcatctatatatcggtgacatcttcttggttaggtctgaggagattata 383
Query: 228 aggcccaatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatg 287
||||| |||||||| ||||| ||||| |||||||| |||||||| ||||||||||| |||
Sbjct: 384 aggccgaatttgtccattcgagaagggatagaaatcattgtttctggaggaatgaccatg 443
Query: 288 ccgcaggtgat 298
||||| |||||
Sbjct: 444 ccgcatgtgat 454
>gb|C99208.1|C99208 C99208 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10436_8Z, mRNA sequence
Length = 645
Score = 226 bits (114), Expect = 1e-056
Identities = 222/254 (87%), Gaps = 3/254 (1%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtc-atccccgtgttggtgaatatgcatttggatt 106
||||| |||||||| ||||| ||||||| |||||||| ||||||||||||||||||||||
Sbjct: 76 gcatttaaagaagttgcaataattagtccatccccgtattggtgaatatgcatttggatt 135
Query: 107 cataacatcaaccatggttcttcagacagacaaaggtgatgaagaattgtg-tagtgttt 165
||||||||| || ||| | |||||||| |||||||||||||||||| |||| ||||| |
Sbjct: 136 cataacatcgacgatgatccttcagactgacaaaggtgatgaagaactgtgccagtgtat 195
Query: 166 atgtgccaaccaatcatttatatattggtgacatctttttggtaaactccgccgaaatta 225
||||||||||||||||| ||||||| ||||||||||| ||||| | || | || ||||
Sbjct: 196 atgtgccaaccaatcatctatatatcggtgacatcttcttggttaggtctgaggagatta 255
Query: 226 taaggcccaatttgtctattcgtgaaggcatagaaat-aattgtttcaggaggaatgact 284
||||||| |||||||| ||||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 256 taaggccgaatttgtccattcgagaagggatagaaatccattgtttctggaggaatgacc 315
Query: 285 atgccgcaggtgat 298
||||||||||||||
Sbjct: 316 atgccgcaggtgat 329
>gb|CB679715.1|CB679715 OSJNEf03J03.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03J03 5', mRNA sequence
Length = 807
Score = 200 bits (101), Expect = 8e-049
Identities = 236/281 (83%)
Strand = Plus / Plus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| || || ||| ||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 437 aaagaagttgcgataattcgtcatccacgtattggtgaatatgcatttggatttataaca 496
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
||||| | ||||||||||| |||||||| || |||||| |||| || ||||||||||||
Sbjct: 497 tcaactgttgttcttcagactgacaaaggcgacgaagaactgtgcagcgtttatgtgcca 556
Query: 174 accaatcatttatatattggtgacatctttttggtaaactccgccgaaattataaggccc 233
|| |||||| | || ||||||||||| ||| |||| ||||| | || || ||||| ||
Sbjct: 557 acaaatcatctttacattggtgacatatttctggtgaactctgaggagataataagacca 616
Query: 234 aatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcag 293
||||| || ||||| ||||| || |||||||||||||| ||||||||||||||||| |||
Sbjct: 617 aatttatccattcgagaaggaatcgaaataattgtttctggaggaatgactatgccacag 676
Query: 294 gtgatcatgtcactggaaccaacacctcggaagagccagaa 334
|||||| ||| || ||||| || || |||||||||||||
Sbjct: 677 gtgatcgcgtcccttgaacccaccccaaggaagagccagaa 717
>gb|CB685153.1|CB685153 OSJNEf15F10.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15F10 5', mRNA sequence
Length = 758
Score = 200 bits (101), Expect = 8e-049
Identities = 236/281 (83%)
Strand = Plus / Plus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| || || ||| ||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 431 aaagaagttgcgataattcgtcatccacgtattggtgaatatgcatttggatttataaca 490
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
||||| | ||||||||||| |||||||| || |||||| |||| || ||||||||||||
Sbjct: 491 tcaactgttgttcttcagactgacaaaggcgacgaagaactgtgcagcgtttatgtgcca 550
Query: 174 accaatcatttatatattggtgacatctttttggtaaactccgccgaaattataaggccc 233
|| |||||| | || ||||||||||| ||| |||| ||||| | || || ||||| ||
Sbjct: 551 acaaatcatctttacattggtgacatatttctggtgaactctgaggagataataagacca 610
Query: 234 aatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcag 293
||||| || ||||| ||||| || |||||||||||||| ||||||||||||||||| |||
Sbjct: 611 aatttatccattcgagaaggaatcgaaataattgtttctggaggaatgactatgccacag 670
Query: 294 gtgatcatgtcactggaaccaacacctcggaagagccagaa 334
|||||| ||| || ||||| || || |||||||||||||
Sbjct: 671 gtgatcgcgtcccttgaacccacccccaggaagagccagaa 711
>dbj|AK061366.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D06, full
insert sequence
Length = 1271
Score = 200 bits (101), Expect = 8e-049
Identities = 236/281 (83%)
Strand = Plus / Plus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| || || ||| ||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 596 aaagaagttgcgataattcgtcatccacgtattggtgaatatgcatttggatttataaca 655
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
||||| | ||||||||||| |||||||| || |||||| |||| || ||||||||||||
Sbjct: 656 tcaactgttgttcttcagactgacaaaggcgacgaagaactgtgcagcgtttatgtgcca 715
Query: 174 accaatcatttatatattggtgacatctttttggtaaactccgccgaaattataaggccc 233
|| |||||| | || ||||||||||| ||| |||| ||||| | || || ||||| ||
Sbjct: 716 acaaatcatctttacattggtgacatatttctggtgaactctgaggagataataagacca 775
Query: 234 aatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcag 293
||||| || ||||| ||||| || |||||||||||||| ||||||||||||||||| |||
Sbjct: 776 aatttatccattcgagaaggaatcgaaataattgtttctggaggaatgactatgccacag 835
Query: 294 gtgatcatgtcactggaaccaacacctcggaagagccagaa 334
|||||| ||| || ||||| || || |||||||||||||
Sbjct: 836 gtgatcgcgtcccttgaacccaccccaaggaagagccagaa 876
>dbj|AK121441.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140N15, full
insert sequence
Length = 2362
Score = 200 bits (101), Expect = 8e-049
Identities = 236/281 (83%)
Strand = Plus / Plus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| || || ||| ||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 1680 aaagaagttgcgataattcgtcatccacgtattggtgaatatgcatttggatttataaca 1739
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
||||| | ||||||||||| |||||||| || |||||| |||| || ||||||||||||
Sbjct: 1740 tcaactgttgttcttcagactgacaaaggcgacgaagaactgtgcagcgtttatgtgcca 1799
Query: 174 accaatcatttatatattggtgacatctttttggtaaactccgccgaaattataaggccc 233
|| |||||| | || ||||||||||| ||| |||| ||||| | || || ||||| ||
Sbjct: 1800 acaaatcatctttacattggtgacatatttctggtgaactctggggagataataagacca 1859
Query: 234 aatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcag 293
||||| || ||||| ||||| || |||||||||||||| ||||||||||||||||| |||
Sbjct: 1860 aatttatccattcgagaaggaatcgaaataattgtttctggaggaatgactatgccacag 1919
Query: 294 gtgatcatgtcactggaaccaacacctcggaagagccagaa 334
|||||| ||| || ||||| || || |||||||||||||
Sbjct: 1920 gtgatcgcgtcccttgaacccaccccaaggaagagccagaa 1960
>ref|NM_190765.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 780
Score = 200 bits (101), Expect = 8e-049
Identities = 236/281 (83%)
Strand = Plus / Plus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| || || ||| ||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 472 aaagaagttgcgataattcgtcatccacgtattggtgaatatgcatttggatttataaca 531
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
||||| | ||||||||||| |||||||| || |||||| |||| || ||||||||||||
Sbjct: 532 tcaactgttgttcttcagactgacaaaggcgacgaagaactgtgcagcgtttatgtgcca 591
Query: 174 accaatcatttatatattggtgacatctttttggtaaactccgccgaaattataaggccc 233
|| |||||| | || ||||||||||| ||| |||| ||||| | || || ||||| ||
Sbjct: 592 acaaatcatctttacattggtgacatatttctggtgaactctgaggagataataagacca 651
Query: 234 aatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcag 293
||||| || ||||| ||||| || |||||||||||||| ||||||||||||||||| |||
Sbjct: 652 aatttatccattcgagaaggaatcgaaataattgtttctggaggaatgactatgccacag 711
Query: 294 gtgatcatgtcactggaaccaacacctcggaagagccagaa 334
|||||| ||| || ||||| || || |||||||||||||
Sbjct: 712 gtgatcgcgtcccttgaacccaccccaaggaagagccagaa 752
>gb|CF323560.1|CF323560 HDN--04-C19.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-C19, mRNA sequence
Length = 512
Score = 184 bits (93), Expect = 5e-044
Identities = 145/161 (90%), Gaps = 1/161 (0%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 342 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttggattc 401
Query: 108 ataacatcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttat 167
|||||||| || ||| | |||||||| |||||||||||||||||| |||| ||||| |||
Sbjct: 402 ataacatcgacgatgatccttcagactgacaaaggtgatgaagaactgtgcagtgtatat 461
Query: 168 gtgc-caaccaatcatttatatattggtgacatctttttgg 207
|||| ||||||||||| ||||||| ||||||||||| ||||
Sbjct: 462 gtgcncaaccaatcatctatatatcggtgacatcttcttgg 502
>gb|AACV01012264.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012264, whole
genome shotgun sequence
Length = 25704
Score = 115 bits (58), Expect = 4e-023
Identities = 112/130 (86%)
Strand = Plus / Plus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||||||||||||| |||| ||||| |||||||||||||||||| |||||
Sbjct: 6715 cagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcatctatat 6774
Query: 189 attggtgacatctttttggtaaactccgccgaaattataaggcccaatttgtctattcgt 248
|| ||||||||||| ||||| | || | || ||||||||||| |||||||| |||||
Sbjct: 6775 atcggtgacatcttcttggttaggtctgaggagattataaggccgaatttgtccattcga 6834
Query: 249 gaaggcatag 258
||||| ||||
Sbjct: 6835 gaagggatag 6844
Score = 103 bits (52), Expect = 1e-019
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 5995 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttggattc 6054
Query: 108 ataacatc 115
||||||||
Sbjct: 6055 ataacatc 6062
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgat 298
|||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 6971 agaaatcattgtttctggaggaatgaccatgccgcaggtgat 7012
>ref|NT_107212.1| Oryza sativa (japonica cultivar-group)
Length = 2712182
Score = 115 bits (58), Expect = 4e-023
Identities = 112/130 (86%)
Strand = Plus / Plus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||||||||||||| |||| ||||| |||||||||||||||||| |||||
Sbjct: 2574694 cagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcatctatat 2574753
Query: 189 attggtgacatctttttggtaaactccgccgaaattataaggcccaatttgtctattcgt 248
|| ||||||||||| ||||| | || | || ||||||||||| |||||||| |||||
Sbjct: 2574754 atcggtgacatcttcttggttaggtctgaggagattataaggccgaatttgtccattcga 2574813
Query: 249 gaaggcatag 258
||||| ||||
Sbjct: 2574814 gaagggatag 2574823
Score = 103 bits (52), Expect = 1e-019
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 2573974 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttggattc 2574033
Query: 108 ataacatc 115
||||||||
Sbjct: 2574034 ataacatc 2574041
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgat 298
|||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 2574950 agaaatcattgtttctggaggaatgaccatgccgcaggtgat 2574991
>gb|AC105318.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_F05,
complete sequence
Length = 109126
Score = 115 bits (58), Expect = 4e-023
Identities = 112/130 (86%)
Strand = Plus / Plus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||||||||||||| |||| ||||| |||||||||||||||||| |||||
Sbjct: 55935 cagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcatctatat 55994
Query: 189 attggtgacatctttttggtaaactccgccgaaattataaggcccaatttgtctattcgt 248
|| ||||||||||| ||||| | || | || ||||||||||| |||||||| |||||
Sbjct: 55995 atcggtgacatcttcttggttaggtctgaggagattataaggccgaatttgtccattcga 56054
Query: 249 gaaggcatag 258
||||| ||||
Sbjct: 56055 gaagggatag 56064
Score = 103 bits (52), Expect = 1e-019
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 55215 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttggattc 55274
Query: 108 ataacatc 115
||||||||
Sbjct: 55275 ataacatc 55282
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgat 298
|||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 56191 agaaatcattgtttctggaggaatgaccatgccgcaggtgat 56232
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 115 bits (58), Expect = 4e-023
Identities = 112/130 (86%)
Strand = Plus / Plus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||||||||||||| |||| ||||| |||||||||||||||||| |||||
Sbjct: 3606609 cagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcatctatat 3606668
Query: 189 attggtgacatctttttggtaaactccgccgaaattataaggcccaatttgtctattcgt 248
|| ||||||||||| ||||| | || | || ||||||||||| |||||||| |||||
Sbjct: 3606669 atcggtgacatcttcttggttaggtctgaggagattataaggccgaatttgtccattcga 3606728
Query: 249 gaaggcatag 258
||||| ||||
Sbjct: 3606729 gaagggatag 3606738
Score = 103 bits (52), Expect = 1e-019
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 3605889 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttggattc 3605948
Query: 108 ataacatc 115
||||||||
Sbjct: 3605949 ataacatc 3605956
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgat 298
|||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 3606865 agaaatcattgtttctggaggaatgaccatgccgcaggtgat 3606906
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
|||||||| ||||| | ||||| || ||||| ||| |||| |||||||||||||| |||
Sbjct: 8459669 gcattcaaggaagtggtcatcataaggcatcctcgtattggagaatatgcatttggtttc 8459610
Query: 108 ataacatca 116
|| ||||||
Sbjct: 8459609 attacatca 8459601
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 115 bits (58), Expect = 4e-023
Identities = 112/130 (86%)
Strand = Plus / Plus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||||||||||||| |||| ||||| |||||||||||||||||| |||||
Sbjct: 20906922 cagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcatctatat 20906981
Query: 189 attggtgacatctttttggtaaactccgccgaaattataaggcccaatttgtctattcgt 248
|| ||||||||||| ||||| | || | || ||||||||||| |||||||| |||||
Sbjct: 20906982 atcggtgacatcttcttggttaggtctgaggagattataaggccgaatttgtccattcga 20907041
Query: 249 gaaggcatag 258
||||| ||||
Sbjct: 20907042 gaagggatag 20907051
Score = 103 bits (52), Expect = 1e-019
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 20906202 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttggattc 20906261
Query: 108 ataacatc 115
||||||||
Sbjct: 20906262 ataacatc 20906269
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgat 298
|||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 20907178 agaaatcattgtttctggaggaatgaccatgccgcaggtgat 20907219
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
|||||||| ||||| | ||||| || ||||| ||| |||| |||||||||||||| |||
Sbjct: 25759982 gcattcaaggaagtggtcatcataaggcatcctcgtattggagaatatgcatttggtttc 25759923
Query: 108 ataacatca 116
|| ||||||
Sbjct: 25759922 attacatca 25759914
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 115 bits (58), Expect = 4e-023
Identities = 112/130 (86%)
Strand = Plus / Plus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||||||||||||| |||| ||||| |||||||||||||||||| |||||
Sbjct: 21269329 cagactgacaaaggtgatgaagaactgtgcagtgtatatgtgccaaccaatcatctatat 21269388
Query: 189 attggtgacatctttttggtaaactccgccgaaattataaggcccaatttgtctattcgt 248
|| ||||||||||| ||||| | || | || ||||||||||| |||||||| |||||
Sbjct: 21269389 atcggtgacatcttcttggttaggtctgaggagattataaggccgaatttgtccattcga 21269448
Query: 249 gaaggcatag 258
||||| ||||
Sbjct: 21269449 gaagggatag 21269458
Score = 103 bits (52), Expect = 1e-019
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 21268609 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttggattc 21268668
Query: 108 ataacatc 115
||||||||
Sbjct: 21268669 ataacatc 21268676
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgat 298
|||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 21269585 agaaatcattgtttctggaggaatgaccatgccgcaggtgat 21269626
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
|||||||| ||||| | ||||| || ||||| ||| |||| |||||||||||||| |||
Sbjct: 26073629 gcattcaaggaagtggtcatcataaggcatcctcgtattggagaatatgcatttggtttc 26073570
Query: 108 ataacatca 116
|| ||||||
Sbjct: 26073569 attacatca 26073561
>gb|CF326437.1|CF326437 JMT1--06-A24.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--06-A24, mRNA sequence
Length = 696
Score = 103 bits (52), Expect = 1e-019
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 20 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttggattc 79
Query: 108 ataacatc 115
||||||||
Sbjct: 80 ataacatc 87
>gb|AU077950.1|AU077950 AU077950 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12951_8Z, mRNA sequence
Length = 718
Score = 99.6 bits (50), Expect = 2e-018
Identities = 137/166 (82%)
Strand = Plus / Plus
Query: 169 tgccaaccaatcatttatatattggtgacatctttttggtaaactccgccgaaattataa 228
||||||| |||||| | || ||||||||||| ||| |||| ||||| | || || ||||
Sbjct: 96 tgccaacaaatcatctttacattggtgacatatttctggtgaactctgaggagataataa 155
Query: 229 ggcccaatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatgc 288
| || ||||| || ||||| ||||| || |||||||||||||| ||||||||||||||||
Sbjct: 156 gaccaaatttatccattcgagaaggaatcgaaataattgtttctggaggaatgactatgc 215
Query: 289 cgcaggtgatcatgtcactggaaccaacacctcggaagagccagaa 334
| ||||||||| ||| || ||||| || || |||||||||||||
Sbjct: 216 cacaggtgatcgcgtcccttgaacccaccccaaggaagagccagaa 261
>gb|C97539.1|C97539 C97539 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60342_8Z, mRNA sequence
Length = 500
Score = 93.7 bits (47), Expect = 1e-016
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand = Plus / Plus
Query: 154 tgtgtagtgtttatgtgccaaccaatcatttatatattggtgacatctttttggtaaact 213
|||| ||||| ||||||||||||| |||| ||||||| |||| |||||| ||||| | |
Sbjct: 4 tgtgcagtgtatatgtgccaacca-tcatctatatatcggtgncatcttcttggttaggt 62
Query: 214 ccgccgaaattataaggcccaatttgtctattcgtgaaggcatagaaataattgtttcag 273
| | || ||||||||||| |||||||| ||||| ||||| ||||||| |||||||| |
Sbjct: 63 ctgaggagattataaggccgaatttgtccattcgagaagggntagaaatcattgtttctg 122
Query: 274 gaggaatgactatgccgcaggtgat 298
|||| ||||| ||||||||||||||
Sbjct: 123 gagg-atgaccatgccgcaggtgat 146
>gb|C97538.1|C97538 C97538 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60342_7A, mRNA sequence
Length = 709
Score = 85.7 bits (43), Expect = 3e-014
Identities = 81/93 (87%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||| ||||
Sbjct: 607 aaagaagttgcaataattagtcatccccgtattg-tgaatatgcatttggattcanaaca 665
Query: 114 tcaaccatggttcttcagacagacaaaggtgat 146
|| | ||| | ||| |||| ||||||||||||
Sbjct: 666 tcgatgatgatccttnagactgacaaaggtgat 698
>gb|CF309705.1|CF309705 ABF--03-P22.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-P22, mRNA sequence
Length = 551
Score = 83.8 bits (42), Expect = 1e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 225 ataaggcccaatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgact 284
||||| || ||||| || ||||| ||||| || |||||||||||||| ||||||||||||
Sbjct: 542 ataagaccaaatttatccattcgagaaggaatcgaaataattgtttctggaggaatgact 483
Query: 285 atgccgcaggtgatcatgtcactggaaccaacacctcggaagagccagaa 334
||||| ||||||||| ||| || ||||| || || |||||||||||||
Sbjct: 482 atgccacaggtgatcgcgtcccttgaacccaccccaaggaagagccagaa 433
>gb|CB653923.1|CB653923 OSJNEc05G06.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05G06 5', mRNA sequence
Length = 646
Score = 81.8 bits (41), Expect = 5e-013
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttgga 104
||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 590 gcatttaaagaagttgcaataattagtcatccccgtattggtgaatatgcatttgga 646
>gb|AU094034.1|AU094034 AU094034 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1952, mRNA sequence
Length = 609
Score = 75.8 bits (38), Expect = 3e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 234 aatttgtctattcgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcag 293
||||| || ||||| ||||| || |||||||||||||| |||||||||||||| || |||
Sbjct: 36 aatttatccattcgagaaggaatcgaaataattgtttctggaggaatgactatnccacag 95
Query: 294 gtgatcatgtcactggaaccaacacctcggaagagccagaa 334
|||||| ||| || ||||| || || |||||||||||||
Sbjct: 96 gtgatcgcgtcccttgaacccaccccaaggaagagccagaa 136
>gb|AACV01002753.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002753, whole
genome shotgun sequence
Length = 18525
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| || || ||| ||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 14010 aaagaagttgcgataattcgtcatccacgtattggtgaatatgcatttggatttataaca 13951
Query: 114 tcaaccatggttcttcag 131
||||| | |||||||||
Sbjct: 13950 tcaactgttgttcttcag 13933
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgatcatgtcactggaaccaac 316
||||||||||||||| ||||||||||||||||| ||||||||| ||| || ||||| ||
Sbjct: 13458 agaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccac 13399
Query: 317 acctcggaagagccagaa 334
|| |||||||||||||
Sbjct: 13398 cccaaggaagagccagaa 13381
Score = 67.9 bits (34), Expect = 8e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||| || |||||| |||| || |||||||||||||| |||||| | ||
Sbjct: 13778 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 13719
Query: 189 attggtgacatctttttggtaaactc 214
||||||||||| ||| |||| |||||
Sbjct: 13718 attggtgacatatttctggtgaactc 13693
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| || || ||| ||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 37659924 aaagaagttgcgataattcgtcatccacgtattggtgaatatgcatttggatttataaca 37659865
Query: 114 tcaaccatggttcttcag 131
||||| | |||||||||
Sbjct: 37659864 tcaactgttgttcttcag 37659847
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgatcatgtcactggaaccaac 316
||||||||||||||| ||||||||||||||||| ||||||||| ||| || ||||| ||
Sbjct: 37659372 agaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccac 37659313
Query: 317 acctcggaagagccagaa 334
|| |||||||||||||
Sbjct: 37659312 cccaaggaagagccagaa 37659295
Score = 67.9 bits (34), Expect = 8e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||| || |||||| |||| || |||||||||||||| |||||| | ||
Sbjct: 37659692 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 37659633
Query: 189 attggtgacatctttttggtaaactc 214
||||||||||| ||| |||| |||||
Sbjct: 37659632 attggtgacatatttctggtgaactc 37659607
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| || || ||| ||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 12107307 aaagaagttgcgataattcgtcatccacgtattggtgaatatgcatttggatttataaca 12107248
Query: 114 tcaaccatggttcttcag 131
||||| | |||||||||
Sbjct: 12107247 tcaactgttgttcttcag 12107230
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgatcatgtcactggaaccaac 316
||||||||||||||| ||||||||||||||||| ||||||||| ||| || ||||| ||
Sbjct: 12106755 agaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccac 12106696
Query: 317 acctcggaagagccagaa 334
|| |||||||||||||
Sbjct: 12106695 cccaaggaagagccagaa 12106678
Score = 67.9 bits (34), Expect = 8e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||| || |||||| |||| || |||||||||||||| |||||| | ||
Sbjct: 12107075 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 12107016
Query: 189 attggtgacatctttttggtaaactc 214
||||||||||| ||| |||| |||||
Sbjct: 12107015 attggtgacatatttctggtgaactc 12106990
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0677H08
Length = 178830
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| || || ||| ||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 39728 aaagaagttgcgataattcgtcatccacgtattggtgaatatgcatttggatttataaca 39669
Query: 114 tcaaccatggttcttcag 131
||||| | |||||||||
Sbjct: 39668 tcaactgttgttcttcag 39651
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgatcatgtcactggaaccaac 316
||||||||||||||| ||||||||||||||||| ||||||||| ||| || ||||| ||
Sbjct: 39176 agaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccac 39117
Query: 317 acctcggaagagccagaa 334
|| |||||||||||||
Sbjct: 39116 cccaaggaagagccagaa 39099
Score = 67.9 bits (34), Expect = 8e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||| || |||||| |||| || |||||||||||||| |||||| | ||
Sbjct: 39496 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 39437
Query: 189 attggtgacatctttttggtaaactc 214
||||||||||| ||| |||| |||||
Sbjct: 39436 attggtgacatatttctggtgaactc 39411
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| || || ||| ||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 11834757 aaagaagttgcgataattcgtcatccacgtattggtgaatatgcatttggatttataaca 11834698
Query: 114 tcaaccatggttcttcag 131
||||| | |||||||||
Sbjct: 11834697 tcaactgttgttcttcag 11834680
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgatcatgtcactggaaccaac 316
||||||||||||||| ||||||||||||||||| ||||||||| ||| || ||||| ||
Sbjct: 11834205 agaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccac 11834146
Query: 317 acctcggaagagccagaa 334
|| |||||||||||||
Sbjct: 11834145 cccaaggaagagccagaa 11834128
Score = 67.9 bits (34), Expect = 8e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||| || |||||| |||| || |||||||||||||| |||||| | ||
Sbjct: 11834525 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 11834466
Query: 189 attggtgacatctttttggtaaactc 214
||||||||||| ||| |||| |||||
Sbjct: 11834465 attggtgacatatttctggtgaactc 11834440
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| || || ||| ||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 37036478 aaagaagttgcgataattcgtcatccacgtattggtgaatatgcatttggatttataaca 37036419
Query: 114 tcaaccatggttcttcag 131
||||| | |||||||||
Sbjct: 37036418 tcaactgttgttcttcag 37036401
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgatcatgtcactggaaccaac 316
||||||||||||||| ||||||||||||||||| ||||||||| ||| || ||||| ||
Sbjct: 37035926 agaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccac 37035867
Query: 317 acctcggaagagccagaa 334
|| |||||||||||||
Sbjct: 37035866 cccaaggaagagccagaa 37035849
Score = 67.9 bits (34), Expect = 8e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||| || |||||| |||| || |||||||||||||| |||||| | ||
Sbjct: 37036246 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 37036187
Query: 189 attggtgacatctttttggtaaactc 214
||||||||||| ||| |||| |||||
Sbjct: 37036186 attggtgacatatttctggtgaactc 37036161
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 439 ggagcttgagacaatcaattt 459
|||||||||||||||||||||
Sbjct: 24700522 ggagcttgagacaatcaattt 24700542
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
|||||||| || || ||| ||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 37579254 aaagaagttgcgataattcgtcatccacgtattggtgaatatgcatttggatttataaca 37579195
Query: 114 tcaaccatggttcttcag 131
||||| | |||||||||
Sbjct: 37579194 tcaactgttgttcttcag 37579177
Score = 75.8 bits (38), Expect = 3e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgatcatgtcactggaaccaac 316
||||||||||||||| ||||||||||||||||| ||||||||| ||| || ||||| ||
Sbjct: 37578702 agaaataattgtttctggaggaatgactatgccacaggtgatcgcgtcccttgaacccac 37578643
Query: 317 acctcggaagagccagaa 334
|| |||||||||||||
Sbjct: 37578642 cccaaggaagagccagaa 37578625
Score = 67.9 bits (34), Expect = 8e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 129 cagacagacaaaggtgatgaagaattgtgtagtgtttatgtgccaaccaatcatttatat 188
||||| |||||||| || |||||| |||| || |||||||||||||| |||||| | ||
Sbjct: 37579022 cagactgacaaaggcgacgaagaactgtgcagcgtttatgtgccaacaaatcatctttac 37578963
Query: 189 attggtgacatctttttggtaaactc 214
||||||||||| ||| |||| |||||
Sbjct: 37578962 attggtgacatatttctggtgaactc 37578937
>gb|AC137758.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone Ba0060B05,
*** SEQUENCING IN PROGRESS ***, 3 ordered pieces
Length = 94344
Score = 56.0 bits (28), Expect = 3e-005
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 354 aggacagtatgactgtatgaggcatgca 381
||||||||||||||||||||||||||||
Sbjct: 42623 aggacagtatgactgtatgaggcatgca 42596
>gb|AACV01007748.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007748, whole
genome shotgun sequence
Length = 73930
Score = 56.0 bits (28), Expect = 3e-005
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 354 aggacagtatgactgtatgaggcatgca 381
||||||||||||||||||||||||||||
Sbjct: 52585 aggacagtatgactgtatgaggcatgca 52558
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 56.0 bits (28), Expect = 3e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 354 aggacagtatgactgtatgaggcatgca 381
||||||||||||||||||||||||||||
Sbjct: 1416017 aggacagtatgactgtatgaggcatgca 1416044
>gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete
sequence
Length = 139074
Score = 56.0 bits (28), Expect = 3e-005
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 354 aggacagtatgactgtatgaggcatgca 381
||||||||||||||||||||||||||||
Sbjct: 42353 aggacagtatgactgtatgaggcatgca 42326
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 56.0 bits (28), Expect = 3e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 354 aggacagtatgactgtatgaggcatgca 381
||||||||||||||||||||||||||||
Sbjct: 1894555 aggacagtatgactgtatgaggcatgca 1894582
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 56.0 bits (28), Expect = 3e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 354 aggacagtatgactgtatgaggcatgca 381
||||||||||||||||||||||||||||
Sbjct: 29160718 aggacagtatgactgtatgaggcatgca 29160745
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 56.0 bits (28), Expect = 3e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 354 aggacagtatgactgtatgaggcatgca 381
||||||||||||||||||||||||||||
Sbjct: 28202076 aggacagtatgactgtatgaggcatgca 28202103
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 56.0 bits (28), Expect = 3e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 354 aggacagtatgactgtatgaggcatgca 381
||||||||||||||||||||||||||||
Sbjct: 28110752 aggacagtatgactgtatgaggcatgca 28110779
>dbj|AK059220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D01, full
insert sequence
Length = 1170
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
|||||||| ||||| | ||||| || ||||| ||| |||| |||||||||||||| |||
Sbjct: 635 gcattcaaggaagtggtcatcataaggcatcctcgtattggagaatatgcatttggtttc 694
Query: 108 ataacatca 116
|| ||||||
Sbjct: 695 attacatca 703
>gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1187_E11,
complete sequence
Length = 133352
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
|||||||| ||||| | ||||| || ||||| ||| |||| |||||||||||||| |||
Sbjct: 98390 gcattcaaggaagtggtcatcataaggcatcctcgtattggagaatatgcatttggtttc 98331
Query: 108 ataacatca 116
|| ||||||
Sbjct: 98330 attacatca 98322
>gb|AACV01012610.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012610, whole
genome shotgun sequence
Length = 16739
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
|||||||| ||||| | ||||| || ||||| ||| |||| |||||||||||||| |||
Sbjct: 11118 gcattcaaggaagtggtcatcataaggcatcctcgtattggagaatatgcatttggtttc 11059
Query: 108 ataacatca 116
|| ||||||
Sbjct: 11058 attacatca 11050
>ref|NT_107218.1| Oryza sativa (japonica cultivar-group)
Length = 369997
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
|||||||| ||||| | ||||| || ||||| ||| |||| |||||||||||||| |||
Sbjct: 98390 gcattcaaggaagtggtcatcataaggcatcctcgtattggagaatatgcatttggtttc 98331
Query: 108 ataacatca 116
|| ||||||
Sbjct: 98330 attacatca 98322
>gb|AU030028.1|AU030028 AU030028 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50520_2Z, mRNA sequence
Length = 707
Score = 44.1 bits (22), Expect = 0.11
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 48 gcattcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattc 107
|||||||| ||||| || || || || |||||| | |||| ||||||||||||||||||
Sbjct: 93 gcattcaaggaagtggccattataaggcatcccagaattggcgaatatgcatttggattc 152
Query: 108 at 109
||
Sbjct: 153 at 154
>gb|AU030027.1|AU030027 AU030027 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50520_1A, mRNA sequence
Length = 366
Score = 42.1 bits (21), Expect = 0.43
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 85 ttggtgaatatgcatttggattcat 109
|||| ||||||||||||||||||||
Sbjct: 70 ttggcgaatatgcatttggattcat 94
>gb|AC108760.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBa0074B03,
*** SEQUENCING IN PROGRESS ***, 4 ordered pieces
Length = 138126
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 439 ggagcttgagacaatcaattt 459
|||||||||||||||||||||
Sbjct: 124835 ggagcttgagacaatcaattt 124855
>dbj|AP004138.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone OJ1399_D07,
*** SEQUENCING IN PROGRESS ***
Length = 179094
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 439 ggagcttgagacaatcaattt 459
|||||||||||||||||||||
Sbjct: 81806 ggagcttgagacaatcaattt 81826
>dbj|AK071119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082M07, full
insert sequence
Length = 1309
Score = 42.1 bits (21), Expect = 0.43
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 85 ttggtgaatatgcatttggattcat 109
|||| ||||||||||||||||||||
Sbjct: 652 ttggcgaatatgcatttggattcat 676
>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
OSJNBa0028C22, complete sequence
Length = 154228
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 439 ggagcttgagacaatcaattt 459
|||||||||||||||||||||
Sbjct: 15069 ggagcttgagacaatcaattt 15049
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 926,556
Number of Sequences: 438736
Number of extensions: 926556
Number of successful extensions: 4565
Number of sequences better than 0.5: 61
Number of HSP's better than 0.5 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4303
Number of HSP's gapped (non-prelim): 244
length of query: 759
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 738
effective length of database: 2,791,206,460
effective search space: 2059910367480
effective search space used: 2059910367480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)