BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336914.2.1
(1448 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA998180.1|CA998180 S345A_E11 Rice cold stress germinati... 192 4e-046
dbj|AK063148.1| Oryza sativa (japonica cultivar-group) cDNA... 192 4e-046
ref|NT_107141.1| Oryza sativa (japonica cultivar-group) 192 4e-046
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 192 4e-046
gb|AC134044.4| Oryza sativa (japonica cultivar-group) chrom... 192 4e-046
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 192 4e-046
gb|AACV01022471.1| Oryza sativa (japonica cultivar-group) c... 178 6e-042
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 178 6e-042
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 178 6e-042
gb|AU075461.1|AU075461 AU075461 Rice cDNA from immature lea... 168 5e-039
gb|CB683567.1|CB683567 OSJNEf12B23.f OSJNEf Oryza sativa (j... 119 4e-024
gb|CF279149.1|CF279149 14ETL--05-F14.b1 Rice etiolated leaf... 119 4e-024
ref|XM_463043.1| Oryza sativa (japonica cultivar-group), mRNA 119 4e-024
dbj|AK062657.1| Oryza sativa (japonica cultivar-group) cDNA... 111 1e-021
gb|AACV01022467.1| Oryza sativa (japonica cultivar-group) c... 111 1e-021
gb|AU160990.1|AU160990 AU160990 Rice callus Oryza sativa (j... 82 1e-012
gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 gen... 72 9e-010
gb|AACV01007177.1| Oryza sativa (japonica cultivar-group) c... 72 9e-010
ref|NT_107174.1| Oryza sativa (japonica cultivar-group) 72 9e-010
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 72 9e-010
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 72 9e-010
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 72 9e-010
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 72 9e-010
gb|AU070157.1|AU070157 AU070157 Rice cDNA from immature lea... 66 6e-008
gb|AU075460.1|AU075460 AU075460 Rice cDNA from immature lea... 60 4e-006
emb|AL732638.6|CNS08C9D Oryza sativa chromosome 12, . Parti... 50 0.003
ref|NT_107157.1| Oryza sativa (japonica cultivar-group) 50 0.003
gb|AACV01024067.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
>gb|CA998180.1|CA998180 S345A_E11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 665
Score = 192 bits (97), Expect = 4e-046
Identities = 222/264 (84%)
Strand = Plus / Minus
Query: 174 gacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctg 233
||||||||||| ||||| |||||||||||| ||| ||||||||||| |||| | ||||
Sbjct: 417 gacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacggtgcgggcctc 358
Query: 234 gacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggac 293
|||||| || | ||||||||||||||| ||| ||||||||||||||||||||| | ||
Sbjct: 357 gacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctcatctccctcac 298
Query: 294 gtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggc 353
| |||||||||| | ||||||| ||||| ||| ||||| |||||||| || |||||
Sbjct: 297 cgccgagagcacctcgttccggccgacgatggcgagggtgctccccttgtggtcgccggc 238
Query: 354 cgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgta 413
||||||||||||| ||| |||||||||||||||||||| |||||| || ||||||||
Sbjct: 237 ggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcggcgaacgtgta 178
Query: 414 ggtgccctgggcgcggcccacctc 437
| | ||||||||||| ||||||||
Sbjct: 177 gctcccctgggcgcgccccacctc 154
Score = 77.8 bits (39), Expect = 2e-011
Identities = 108/131 (82%)
Strand = Plus / Minus
Query: 463 gtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggac 522
|||||||||||||||||||||||||||| ||||||||| |||||| ||| ||| | |
Sbjct: 131 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 72
Query: 523 gccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaag 582
| |||| ||||||| | | ||| |||||||| ||||||| |||| | ||||||||||
Sbjct: 71 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 12
Query: 583 aacaccttgaa 593
||||||||||
Sbjct: 11 tacaccttgaa 1
>dbj|AK063148.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-H04, full
insert sequence
Length = 756
Score = 192 bits (97), Expect = 4e-046
Identities = 222/264 (84%)
Strand = Plus / Minus
Query: 174 gacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctg 233
||||||||||| ||||| |||||||||||| ||| ||||||||||| |||| | ||||
Sbjct: 553 gacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacggtgcgggcctc 494
Query: 234 gacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggac 293
|||||| || | ||||||||||||||| ||| ||||||||||||||||||||| | ||
Sbjct: 493 gacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctcatctccctcac 434
Query: 294 gtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggc 353
| |||||||||| | ||||||| ||||| ||| ||||| |||||||| || |||||
Sbjct: 433 cgccgagagcacctcgttccggccgacgatggcgagggtgctccccttgtggtcgccggc 374
Query: 354 cgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgta 413
||||||||||||| ||| |||||||||||||||||||| |||||| || ||||||||
Sbjct: 373 ggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcggcgaacgtgta 314
Query: 414 ggtgccctgggcgcggcccacctc 437
| | ||||||||||| ||||||||
Sbjct: 313 gctcccctgggcgcgccccacctc 290
Score = 77.8 bits (39), Expect = 2e-011
Identities = 108/131 (82%)
Strand = Plus / Minus
Query: 463 gtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggac 522
|||||||||||||||||||||||||||| ||||||||| |||||| ||| ||| | |
Sbjct: 267 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 208
Query: 523 gccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaag 582
| |||| ||||||| | | ||| |||||||| ||||||| |||| | ||||||||||
Sbjct: 207 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 148
Query: 583 aacaccttgaa 593
||||||||||
Sbjct: 147 tacaccttgaa 137
>ref|NT_107141.1| Oryza sativa (japonica cultivar-group)
Length = 1008063
Score = 192 bits (97), Expect = 4e-046
Identities = 222/264 (84%)
Strand = Plus / Plus
Query: 174 gacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctg 233
||||||||||| ||||| |||||||||||| ||| ||||||||||| |||| | ||||
Sbjct: 414618 gacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacggtgcgggcctc 414677
Query: 234 gacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggac 293
|||||| || | ||||||||||||||| ||| ||||||||||||||||||||| | ||
Sbjct: 414678 gacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctcatctccctcac 414737
Query: 294 gtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggc 353
| |||||||||| | ||||||| ||||| ||| ||||| |||||||| || |||||
Sbjct: 414738 cgccgagagcacctcgttccggccgacgatggcgagggtgctccccttgtggtcgccggc 414797
Query: 354 cgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgta 413
||||||||||||| ||| |||||||||||||||||||| |||||| || ||||||||
Sbjct: 414798 ggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcggcgaacgtgta 414857
Query: 414 ggtgccctgggcgcggcccacctc 437
| | ||||||||||| ||||||||
Sbjct: 414858 gctcccctgggcgcgccccacctc 414881
Score = 111 bits (56), Expect = 1e-021
Identities = 113/132 (85%)
Strand = Plus / Plus
Query: 156 tagctaggccctgacgttgacggtgtactggacgacggtctcgccggatttgaagccgga 215
|||||| ||| ||||| || |||||||| ||||| |||||||||||| |||||||||||
Sbjct: 417775 tagctacgccttgacgaagagggtgtactcgacgatggtctcgccggacttgaagccgga 417834
Query: 216 gtcgatggtgtgcgcctggacgtacccgcgcgccatgcggaactttccgctgccgccgac 275
||||| |||| | |||| | ||||||| | ||||||||||||||| ||| |||||||||
Sbjct: 417835 gtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagccgccgac 417894
Query: 276 gatgctcatctc 287
|| |||||||||
Sbjct: 417895 gacgctcatctc 417906
Score = 89.7 bits (45), Expect = 4e-015
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 464 tcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacg 523
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||| | ||
Sbjct: 418086 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 418145
Query: 524 ccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaaga 583
|||| ||||||| | ||||| ||||||||| ||| ||||||||| | |||||| ||
Sbjct: 418146 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 418205
Query: 584 acaccttga 592
|||||||||
Sbjct: 418206 acaccttga 418214
Score = 77.8 bits (39), Expect = 2e-011
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 463 gtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggac 522
|||||||||||||||||||||||||||| ||||||||| |||||| ||| ||| | |
Sbjct: 414904 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 414963
Query: 523 gccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaag 582
| |||| ||||||| | | ||| |||||||| ||||||| |||| | ||||||||||
Sbjct: 414964 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 415023
Query: 583 aacaccttgaa 593
||||||||||
Sbjct: 415024 tacaccttgaa 415034
Score = 56.0 bits (28), Expect = 6e-005
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 332 tgctgcccttgtgctccccggccgtgaacacgaagtccatcaccatgaggaggccgaacg 391
||||||| ||||| || ||||| ||||||||||||| ||| |||| |||||||||| |
Sbjct: 417951 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 418010
Query: 392 tctgctggtccgcaaacgtgtaggtgccctgggcgcggcccacc 435
| |||||| || |||||||| || ||||| ||||| ||||||
Sbjct: 418011 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 418054
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 192 bits (97), Expect = 4e-046
Identities = 222/264 (84%)
Strand = Plus / Plus
Query: 174 gacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctg 233
||||||||||| ||||| |||||||||||| ||| ||||||||||| |||| | ||||
Sbjct: 3897481 gacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacggtgcgggcctc 3897540
Query: 234 gacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggac 293
|||||| || | ||||||||||||||| ||| ||||||||||||||||||||| | ||
Sbjct: 3897541 gacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctcatctccctcac 3897600
Query: 294 gtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggc 353
| |||||||||| | ||||||| ||||| ||| ||||| |||||||| || |||||
Sbjct: 3897601 cgccgagagcacctcgttccggccgacgatggcgagggtgctccccttgtggtcgccggc 3897660
Query: 354 cgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgta 413
||||||||||||| ||| |||||||||||||||||||| |||||| || ||||||||
Sbjct: 3897661 ggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcggcgaacgtgta 3897720
Query: 414 ggtgccctgggcgcggcccacctc 437
| | ||||||||||| ||||||||
Sbjct: 3897721 gctcccctgggcgcgccccacctc 3897744
Score = 111 bits (56), Expect = 1e-021
Identities = 113/132 (85%)
Strand = Plus / Plus
Query: 156 tagctaggccctgacgttgacggtgtactggacgacggtctcgccggatttgaagccgga 215
|||||| ||| ||||| || |||||||| ||||| |||||||||||| |||||||||||
Sbjct: 3900638 tagctacgccttgacgaagagggtgtactcgacgatggtctcgccggacttgaagccgga 3900697
Query: 216 gtcgatggtgtgcgcctggacgtacccgcgcgccatgcggaactttccgctgccgccgac 275
||||| |||| | |||| | ||||||| | ||||||||||||||| ||| |||||||||
Sbjct: 3900698 gtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagccgccgac 3900757
Query: 276 gatgctcatctc 287
|| |||||||||
Sbjct: 3900758 gacgctcatctc 3900769
Score = 89.7 bits (45), Expect = 4e-015
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 464 tcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacg 523
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||| | ||
Sbjct: 3900949 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 3901008
Query: 524 ccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaaga 583
|||| ||||||| | ||||| ||||||||| ||| ||||||||| | |||||| ||
Sbjct: 3901009 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 3901068
Query: 584 acaccttga 592
|||||||||
Sbjct: 3901069 acaccttga 3901077
Score = 77.8 bits (39), Expect = 2e-011
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 463 gtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggac 522
|||||||||||||||||||||||||||| ||||||||| |||||| ||| ||| | |
Sbjct: 3897767 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 3897826
Query: 523 gccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaag 582
| |||| ||||||| | | ||| |||||||| ||||||| |||| | ||||||||||
Sbjct: 3897827 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 3897886
Query: 583 aacaccttgaa 593
||||||||||
Sbjct: 3897887 tacaccttgaa 3897897
Score = 56.0 bits (28), Expect = 6e-005
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 332 tgctgcccttgtgctccccggccgtgaacacgaagtccatcaccatgaggaggccgaacg 391
||||||| ||||| || ||||| ||||||||||||| ||| |||| |||||||||| |
Sbjct: 3900814 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 3900873
Query: 392 tctgctggtccgcaaacgtgtaggtgccctgggcgcggcccacc 435
| |||||| || |||||||| || ||||| ||||| ||||||
Sbjct: 3900874 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 3900917
>gb|AC134044.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0019D06 map S10616A, complete sequence
Length = 182486
Score = 192 bits (97), Expect = 4e-046
Identities = 222/264 (84%)
Strand = Plus / Plus
Query: 174 gacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctg 233
||||||||||| ||||| |||||||||||| ||| ||||||||||| |||| | ||||
Sbjct: 25107 gacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacggtgcgggcctc 25166
Query: 234 gacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggac 293
|||||| || | ||||||||||||||| ||| ||||||||||||||||||||| | ||
Sbjct: 25167 gacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctcatctccctcac 25226
Query: 294 gtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggc 353
| |||||||||| | ||||||| ||||| ||| ||||| |||||||| || |||||
Sbjct: 25227 cgccgagagcacctcgttccggccgacgatggcgagggtgctccccttgtggtcgccggc 25286
Query: 354 cgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgta 413
||||||||||||| ||| |||||||||||||||||||| |||||| || ||||||||
Sbjct: 25287 ggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcggcgaacgtgta 25346
Query: 414 ggtgccctgggcgcggcccacctc 437
| | ||||||||||| ||||||||
Sbjct: 25347 gctcccctgggcgcgccccacctc 25370
Score = 111 bits (56), Expect = 1e-021
Identities = 113/132 (85%)
Strand = Plus / Plus
Query: 156 tagctaggccctgacgttgacggtgtactggacgacggtctcgccggatttgaagccgga 215
|||||| ||| ||||| || |||||||| ||||| |||||||||||| |||||||||||
Sbjct: 28264 tagctacgccttgacgaagagggtgtactcgacgatggtctcgccggacttgaagccgga 28323
Query: 216 gtcgatggtgtgcgcctggacgtacccgcgcgccatgcggaactttccgctgccgccgac 275
||||| |||| | |||| | ||||||| | ||||||||||||||| ||| |||||||||
Sbjct: 28324 gtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagccgccgac 28383
Query: 276 gatgctcatctc 287
|| |||||||||
Sbjct: 28384 gacgctcatctc 28395
Score = 89.7 bits (45), Expect = 4e-015
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 464 tcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacg 523
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||| | ||
Sbjct: 28575 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 28634
Query: 524 ccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaaga 583
|||| ||||||| | ||||| ||||||||| ||| ||||||||| | |||||| ||
Sbjct: 28635 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 28694
Query: 584 acaccttga 592
|||||||||
Sbjct: 28695 acaccttga 28703
Score = 77.8 bits (39), Expect = 2e-011
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 463 gtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggac 522
|||||||||||||||||||||||||||| ||||||||| |||||| ||| ||| | |
Sbjct: 25393 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 25452
Query: 523 gccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaag 582
| |||| ||||||| | | ||| |||||||| ||||||| |||| | ||||||||||
Sbjct: 25453 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 25512
Query: 583 aacaccttgaa 593
||||||||||
Sbjct: 25513 tacaccttgaa 25523
Score = 56.0 bits (28), Expect = 6e-005
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 332 tgctgcccttgtgctccccggccgtgaacacgaagtccatcaccatgaggaggccgaacg 391
||||||| ||||| || ||||| ||||||||||||| ||| |||| |||||||||| |
Sbjct: 28440 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 28499
Query: 392 tctgctggtccgcaaacgtgtaggtgccctgggcgcggcccacc 435
| |||||| || |||||||| || ||||| ||||| ||||||
Sbjct: 28500 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 28543
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 192 bits (97), Expect = 4e-046
Identities = 222/264 (84%)
Strand = Plus / Plus
Query: 174 gacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctg 233
||||||||||| ||||| |||||||||||| ||| ||||||||||| |||| | ||||
Sbjct: 3906175 gacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacggtgcgggcctc 3906234
Query: 234 gacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggac 293
|||||| || | ||||||||||||||| ||| ||||||||||||||||||||| | ||
Sbjct: 3906235 gacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctcatctccctcac 3906294
Query: 294 gtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggc 353
| |||||||||| | ||||||| ||||| ||| ||||| |||||||| || |||||
Sbjct: 3906295 cgccgagagcacctcgttccggccgacgatggcgagggtgctccccttgtggtcgccggc 3906354
Query: 354 cgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgta 413
||||||||||||| ||| |||||||||||||||||||| |||||| || ||||||||
Sbjct: 3906355 ggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcggcgaacgtgta 3906414
Query: 414 ggtgccctgggcgcggcccacctc 437
| | ||||||||||| ||||||||
Sbjct: 3906415 gctcccctgggcgcgccccacctc 3906438
Score = 111 bits (56), Expect = 1e-021
Identities = 113/132 (85%)
Strand = Plus / Plus
Query: 156 tagctaggccctgacgttgacggtgtactggacgacggtctcgccggatttgaagccgga 215
|||||| ||| ||||| || |||||||| ||||| |||||||||||| |||||||||||
Sbjct: 3909332 tagctacgccttgacgaagagggtgtactcgacgatggtctcgccggacttgaagccgga 3909391
Query: 216 gtcgatggtgtgcgcctggacgtacccgcgcgccatgcggaactttccgctgccgccgac 275
||||| |||| | |||| | ||||||| | ||||||||||||||| ||| |||||||||
Sbjct: 3909392 gtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagccgccgac 3909451
Query: 276 gatgctcatctc 287
|| |||||||||
Sbjct: 3909452 gacgctcatctc 3909463
Score = 89.7 bits (45), Expect = 4e-015
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 464 tcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacg 523
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||| | ||
Sbjct: 3909643 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 3909702
Query: 524 ccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaaga 583
|||| ||||||| | ||||| ||||||||| ||| ||||||||| | |||||| ||
Sbjct: 3909703 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 3909762
Query: 584 acaccttga 592
|||||||||
Sbjct: 3909763 acaccttga 3909771
Score = 77.8 bits (39), Expect = 2e-011
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 463 gtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggac 522
|||||||||||||||||||||||||||| ||||||||| |||||| ||| ||| | |
Sbjct: 3906461 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 3906520
Query: 523 gccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaag 582
| |||| ||||||| | | ||| |||||||| ||||||| |||| | ||||||||||
Sbjct: 3906521 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 3906580
Query: 583 aacaccttgaa 593
||||||||||
Sbjct: 3906581 tacaccttgaa 3906591
Score = 56.0 bits (28), Expect = 6e-005
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 332 tgctgcccttgtgctccccggccgtgaacacgaagtccatcaccatgaggaggccgaacg 391
||||||| ||||| || ||||| ||||||||||||| ||| |||| |||||||||| |
Sbjct: 3909508 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 3909567
Query: 392 tctgctggtccgcaaacgtgtaggtgccctgggcgcggcccacc 435
| |||||| || |||||||| || ||||| ||||| ||||||
Sbjct: 3909568 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 3909611
>gb|AACV01022471.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022471,
whole genome shotgun sequence
Length = 1146
Score = 178 bits (90), Expect = 6e-042
Identities = 222/265 (83%), Gaps = 1/265 (0%)
Strand = Plus / Minus
Query: 174 gacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctg 233
||||||||||| ||||| |||||||||||| ||| ||||||||||| |||| | ||||
Sbjct: 528 gacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacggtgcgggcctc 469
Query: 234 gacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggac 293
|||||| || | ||||||||||||||| ||| ||||||||||||||||||||| | ||
Sbjct: 468 gacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctcatctccctcac 409
Query: 294 gtcgctgagcacctcgntgcggccgaggatggagagcgtgctgccc-ttgtgctccccgg 352
| |||||||||| | ||||||| ||||| ||| ||||| ||| ||||| || ||||
Sbjct: 408 cgccgagagcacctcgttccggccgacgatggcgagggtgctcccccttgtggtcgccgg 349
Query: 353 ccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgt 412
| ||||||||||||| ||| |||||||||||||||||||| |||||| || |||||||
Sbjct: 348 cggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcggcgaacgtgt 289
Query: 413 aggtgccctgggcgcggcccacctc 437
|| | ||||||||||| ||||||||
Sbjct: 288 agctcccctgggcgcgccccacctc 264
Score = 77.8 bits (39), Expect = 2e-011
Identities = 108/131 (82%)
Strand = Plus / Minus
Query: 463 gtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggac 522
|||||||||||||||||||||||||||| ||||||||| |||||| ||| ||| | |
Sbjct: 241 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 182
Query: 523 gccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaag 582
| |||| ||||||| | | ||| |||||||| ||||||| |||| | ||||||||||
Sbjct: 181 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 122
Query: 583 aacaccttgaa 593
||||||||||
Sbjct: 121 tacaccttgaa 111
>gb|CH401257.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000094 genomic
scaffold, whole genome shotgun sequence
Length = 4775249
Score = 178 bits (90), Expect = 6e-042
Identities = 222/265 (83%), Gaps = 1/265 (0%)
Strand = Plus / Plus
Query: 174 gacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctg 233
||||||||||| ||||| |||||||||||| ||| ||||||||||| |||| | ||||
Sbjct: 3753930 gacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacggtgcgggcctc 3753989
Query: 234 gacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggac 293
|||||| || | ||||||||||||||| ||| ||||||||||||||||||||| | ||
Sbjct: 3753990 gacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctcatctccctcac 3754049
Query: 294 gtcgctgagcacctcgntgcggccgaggatggagagcgtgctgccc-ttgtgctccccgg 352
| |||||||||| | ||||||| ||||| ||| ||||| ||| ||||| || ||||
Sbjct: 3754050 cgccgagagcacctcgttccggccgacgatggcgagggtgctcccccttgtggtcgccgg 3754109
Query: 353 ccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgt 412
| ||||||||||||| ||| |||||||||||||||||||| |||||| || |||||||
Sbjct: 3754110 cggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcggcgaacgtgt 3754169
Query: 413 aggtgccctgggcgcggcccacctc 437
|| | ||||||||||| ||||||||
Sbjct: 3754170 agctcccctgggcgcgccccacctc 3754194
Score = 111 bits (56), Expect = 1e-021
Identities = 113/132 (85%)
Strand = Plus / Plus
Query: 156 tagctaggccctgacgttgacggtgtactggacgacggtctcgccggatttgaagccgga 215
|||||| ||| ||||| || |||||||| ||||| |||||||||||| |||||||||||
Sbjct: 3705759 tagctacgccttgacgaagagggtgtactcgacgatggtctcgccggacttgaagccgga 3705818
Query: 216 gtcgatggtgtgcgcctggacgtacccgcgcgccatgcggaactttccgctgccgccgac 275
||||| |||| | |||| | ||||||| | ||||||||||||||| ||| |||||||||
Sbjct: 3705819 gtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagccgccgac 3705878
Query: 276 gatgctcatctc 287
|| |||||||||
Sbjct: 3705879 gacgctcatctc 3705890
Score = 89.7 bits (45), Expect = 4e-015
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 464 tcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacg 523
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||| | ||
Sbjct: 3706070 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 3706129
Query: 524 ccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaaga 583
|||| ||||||| | ||||| ||||||||| ||| ||||||||| | |||||| ||
Sbjct: 3706130 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 3706189
Query: 584 acaccttga 592
|||||||||
Sbjct: 3706190 acaccttga 3706198
Score = 77.8 bits (39), Expect = 2e-011
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 463 gtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggac 522
|||||||||||||||||||||||||||| ||||||||| |||||| ||| ||| | |
Sbjct: 3754217 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 3754276
Query: 523 gccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaag 582
| |||| ||||||| | | ||| |||||||| ||||||| |||| | ||||||||||
Sbjct: 3754277 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 3754336
Query: 583 aacaccttgaa 593
||||||||||
Sbjct: 3754337 tacaccttgaa 3754347
Score = 56.0 bits (28), Expect = 6e-005
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 332 tgctgcccttgtgctccccggccgtgaacacgaagtccatcaccatgaggaggccgaacg 391
||||||| ||||| || ||||| ||||||||||||| ||| |||| |||||||||| |
Sbjct: 3705935 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 3705994
Query: 392 tctgctggtccgcaaacgtgtaggtgccctgggcgcggcccacc 435
| |||||| || |||||||| || ||||| ||||| ||||||
Sbjct: 3705995 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 3706038
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 178 bits (90), Expect = 6e-042
Identities = 222/265 (83%), Gaps = 1/265 (0%)
Strand = Plus / Plus
Query: 174 gacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctg 233
||||||||||| ||||| |||||||||||| ||| ||||||||||| |||| | ||||
Sbjct: 4056222 gacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacggtgcgggcctc 4056281
Query: 234 gacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggac 293
|||||| || | ||||||||||||||| ||| ||||||||||||||||||||| | ||
Sbjct: 4056282 gacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctcatctccctcac 4056341
Query: 294 gtcgctgagcacctcgntgcggccgaggatggagagcgtgctgccc-ttgtgctccccgg 352
| |||||||||| | ||||||| ||||| ||| ||||| ||| ||||| || ||||
Sbjct: 4056342 cgccgagagcacctcgttccggccgacgatggcgagggtgctcccccttgtggtcgccgg 4056401
Query: 353 ccgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgt 412
| ||||||||||||| ||| |||||||||||||||||||| |||||| || |||||||
Sbjct: 4056402 cggtgaacacgaagttcatgttcatgaggaggccgaacgtcttctggtcggcgaacgtgt 4056461
Query: 413 aggtgccctgggcgcggcccacctc 437
|| | ||||||||||| ||||||||
Sbjct: 4056462 agctcccctgggcgcgccccacctc 4056486
Score = 111 bits (56), Expect = 1e-021
Identities = 113/132 (85%)
Strand = Plus / Plus
Query: 156 tagctaggccctgacgttgacggtgtactggacgacggtctcgccggatttgaagccgga 215
|||||| ||| ||||| || |||||||| ||||| |||||||||||| |||||||||||
Sbjct: 4008051 tagctacgccttgacgaagagggtgtactcgacgatggtctcgccggacttgaagccgga 4008110
Query: 216 gtcgatggtgtgcgcctggacgtacccgcgcgccatgcggaactttccgctgccgccgac 275
||||| |||| | |||| | ||||||| | ||||||||||||||| ||| |||||||||
Sbjct: 4008111 gtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagccgccgac 4008170
Query: 276 gatgctcatctc 287
|| |||||||||
Sbjct: 4008171 gacgctcatctc 4008182
Score = 89.7 bits (45), Expect = 4e-015
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 464 tcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacg 523
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||| | ||
Sbjct: 4008362 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 4008421
Query: 524 ccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaaga 583
|||| ||||||| | ||||| ||||||||| ||| ||||||||| | |||||| ||
Sbjct: 4008422 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 4008481
Query: 584 acaccttga 592
|||||||||
Sbjct: 4008482 acaccttga 4008490
Score = 77.8 bits (39), Expect = 2e-011
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 463 gtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggac 522
|||||||||||||||||||||||||||| ||||||||| |||||| ||| ||| | |
Sbjct: 4056509 gtcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtc 4056568
Query: 523 gccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaag 582
| |||| ||||||| | | ||| |||||||| ||||||| |||| | ||||||||||
Sbjct: 4056569 gacgccgcctgcgccaccctgatcgccgtcggcttcgtcccgcccaccacgtcgtggaag 4056628
Query: 583 aacaccttgaa 593
||||||||||
Sbjct: 4056629 tacaccttgaa 4056639
Score = 56.0 bits (28), Expect = 6e-005
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 332 tgctgcccttgtgctccccggccgtgaacacgaagtccatcaccatgaggaggccgaacg 391
||||||| ||||| || ||||| ||||||||||||| ||| |||| |||||||||| |
Sbjct: 4008227 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 4008286
Query: 392 tctgctggtccgcaaacgtgtaggtgccctgggcgcggcccacc 435
| |||||| || |||||||| || ||||| ||||| ||||||
Sbjct: 4008287 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 4008330
>gb|AU075461.1|AU075461 AU075461 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60741_2Z, mRNA sequence
Length = 391
Score = 168 bits (85), Expect = 5e-039
Identities = 217/260 (83%), Gaps = 1/260 (0%)
Strand = Plus / Minus
Query: 174 gacggtgtactggacgacggtctcgccggatttgaagccggagtcgatggtgtgcgcctg 233
||||||||||| ||||| |||||||||||| ||| ||||||||||| |||| | ||||
Sbjct: 259 gacggtgtactcgacgatggtctcgccggagttggcgccggagtcgacggtgcgggcctc 200
Query: 234 gacgtacccgcgcgccatgcggaactttccgctgccgccgacgatgctcatctcgcggac 293
|||||| || | ||||||||||||||| ||| ||||||||||||||||||||| | ||
Sbjct: 199 gacgtagcccctcgccatgcggaacttgccggagccgccgacgatgctcatctccctcac 140
Query: 294 gtcgctgagcacctcgntgcggccgaggatggagagcgtgctgcccttgtgctccccggc 353
| |||||||||| | ||||||| ||||| ||| ||||| |||||||| || |||||
Sbjct: 139 cgccgagagcacctcgttccggccgacgatggcgagggtgctccccttgtggtcgccggc 80
Query: 354 cgtgaacacgaagtccatcaccatgaggaggccgaacgtctgctggtccgcaaacgtgta 413
||||||||||| | ||| |||||||||||||||||||| |||||| || ||||||||
Sbjct: 79 ggtgaacacgaa-ttcatgttcatgaggaggccgaacgtcttctggtcggcgaacgtgta 21
Query: 414 ggtgccctgggcgcggccca 433
| | ||||||||||| ||||
Sbjct: 20 gctcccctgggcgcgcccca 1
>gb|CB683567.1|CB683567 OSJNEf12B23.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf12B23 5', mRNA sequence
Length = 668
Score = 119 bits (60), Expect = 4e-024
Identities = 124/146 (84%)
Strand = Plus / Minus
Query: 1101 tttagattgaaaggcttgcgaagagaagttcgagctcctcatcttgagatgtagtcctct 1160
|||| |||||||||||||| || |||||||| |||||||||||||||||||| || ||||
Sbjct: 283 tttaaattgaaaggcttgcaaaaagaagttcaagctcctcatcttgagatgtcgttctct 224
Query: 1161 tgatggacagcagatgacgaagtttgtttagcaccttcatgcgnngtatggcgtaggaac 1220
|||| || | ||||| ||||| |||||||| ||||||| ||| ||||||| |||||||
Sbjct: 223 tgatagataatagatggcgaagcttgtttagaaccttcaagcggtgtatggcataggaac 164
Query: 1221 tatgagctggtaggtcgttaaccctc 1246
||| ||||| || | ||||||||||
Sbjct: 163 tattggctggcagtttgttaaccctc 138
>gb|CF279149.1|CF279149 14ETL--05-F14.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--05-F14, mRNA sequence
Length = 590
Score = 119 bits (60), Expect = 4e-024
Identities = 124/146 (84%)
Strand = Plus / Minus
Query: 1101 tttagattgaaaggcttgcgaagagaagttcgagctcctcatcttgagatgtagtcctct 1160
|||| |||||||||||||| || |||||||| |||||||||||||||||||| || ||||
Sbjct: 347 tttaaattgaaaggcttgcaaaaagaagttcaagctcctcatcttgagatgttgttctct 288
Query: 1161 tgatggacagcagatgacgaagtttgtttagcaccttcatgcgnngtatggcgtaggaac 1220
|||| || | ||||| ||||| |||||||| ||||||| ||| ||||||| |||||||
Sbjct: 287 tgatagataatagatggcgaagcttgtttagaaccttcaagcggtgtatggcataggaac 228
Query: 1221 tatgagctggtaggtcgttaaccctc 1246
||| ||||| || | ||||||||||
Sbjct: 227 tattggctggcagtttgttaaccctc 202
>ref|XM_463043.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 694
Score = 119 bits (60), Expect = 4e-024
Identities = 124/146 (84%)
Strand = Plus / Minus
Query: 1101 tttagattgaaaggcttgcgaagagaagttcgagctcctcatcttgagatgtagtcctct 1160
|||| |||||||||||||| || |||||||| |||||||||||||||||||| || ||||
Sbjct: 335 tttaaattgaaaggcttgcaaaaagaagttcaagctcctcatcttgagatgttgttctct 276
Query: 1161 tgatggacagcagatgacgaagtttgtttagcaccttcatgcgnngtatggcgtaggaac 1220
|||| || | ||||| ||||| |||||||| ||||||| ||| ||||||| |||||||
Sbjct: 275 tgatagataatagatggcgaagcttgtttagaaccttcaagcggtgtatggcataggaac 216
Query: 1221 tatgagctggtaggtcgttaaccctc 1246
||| ||||| || | ||||||||||
Sbjct: 215 tattggctggcagtttgttaaccctc 190
>dbj|AK062657.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F01, full
insert sequence
Length = 712
Score = 111 bits (56), Expect = 1e-021
Identities = 113/132 (85%)
Strand = Plus / Minus
Query: 156 tagctaggccctgacgttgacggtgtactggacgacggtctcgccggatttgaagccgga 215
|||||| ||| ||||| || |||||||| ||||| |||||||||||| |||||||||||
Sbjct: 587 tagctacgccttgacgaagagggtgtactcgacgatggtctcgccggacttgaagccgga 528
Query: 216 gtcgatggtgtgcgcctggacgtacccgcgcgccatgcggaactttccgctgccgccgac 275
||||| |||| | |||| | ||||||| | ||||||||||||||| ||| |||||||||
Sbjct: 527 gtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagccgccgac 468
Query: 276 gatgctcatctc 287
|| |||||||||
Sbjct: 467 gacgctcatctc 456
Score = 89.7 bits (45), Expect = 4e-015
Identities = 108/129 (83%)
Strand = Plus / Minus
Query: 464 tcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacg 523
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||| | ||
Sbjct: 276 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 217
Query: 524 ccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaaga 583
|||| ||||||| | ||||| ||||||||| ||| ||||||||| | |||||| ||
Sbjct: 216 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 157
Query: 584 acaccttga 592
|||||||||
Sbjct: 156 acaccttga 148
Score = 56.0 bits (28), Expect = 6e-005
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 332 tgctgcccttgtgctccccggccgtgaacacgaagtccatcaccatgaggaggccgaacg 391
||||||| ||||| || ||||| ||||||||||||| ||| |||| |||||||||| |
Sbjct: 411 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 352
Query: 392 tctgctggtccgcaaacgtgtaggtgccctgggcgcggcccacc 435
| |||||| || |||||||| || ||||| ||||| ||||||
Sbjct: 351 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 308
>gb|AACV01022467.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022467, whole
genome shotgun sequence
Length = 40248
Score = 111 bits (56), Expect = 1e-021
Identities = 113/132 (85%)
Strand = Plus / Minus
Query: 156 tagctaggccctgacgttgacggtgtactggacgacggtctcgccggatttgaagccgga 215
|||||| ||| ||||| || |||||||| ||||| |||||||||||| |||||||||||
Sbjct: 20358 tagctacgccttgacgaagagggtgtactcgacgatggtctcgccggacttgaagccgga 20299
Query: 216 gtcgatggtgtgcgcctggacgtacccgcgcgccatgcggaactttccgctgccgccgac 275
||||| |||| | |||| | ||||||| | ||||||||||||||| ||| |||||||||
Sbjct: 20298 gtcgacggtgcgggcctcggcgtaccccctcgccatgcggaacttgccggagccgccgac 20239
Query: 276 gatgctcatctc 287
|| |||||||||
Sbjct: 20238 gacgctcatctc 20227
Score = 89.7 bits (45), Expect = 4e-015
Identities = 108/129 (83%)
Strand = Plus / Minus
Query: 464 tcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacg 523
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||| | ||
Sbjct: 20047 tcgtcagcgggtcgtcgatggccaccaccgcgccgaagtaggtcgacgacgcgttcgtcg 19988
Query: 524 ccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaaga 583
|||| ||||||| | ||||| ||||||||| ||| ||||||||| | |||||| ||
Sbjct: 19987 acgccgcctgcgccacccggatcgccgtcgggttcggccccgccaccacgtcgtgccagt 19928
Query: 584 acaccttga 592
|||||||||
Sbjct: 19927 acaccttga 19919
Score = 56.0 bits (28), Expect = 6e-005
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 332 tgctgcccttgtgctccccggccgtgaacacgaagtccatcaccatgaggaggccgaacg 391
||||||| ||||| || ||||| ||||||||||||| ||| |||| |||||||||| |
Sbjct: 20182 tgctgccgttgtggtcgccggcggtgaacacgaagttcatgtccatcaggaggccgatca 20123
Query: 392 tctgctggtccgcaaacgtgtaggtgccctgggcgcggcccacc 435
| |||||| || |||||||| || ||||| ||||| ||||||
Sbjct: 20122 ccctctggtcggcgaacgtgtacgtcccctgcgcgcgccccacc 20079
>gb|AU160990.1|AU160990 AU160990 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53123, mRNA sequence
Length = 385
Score = 81.8 bits (41), Expect = 1e-012
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 1101 tttagattgaaaggcttgcgaagagaagttcgagctcctcatcttgagatgtagtcctct 1160
|||| |||||||||||||| || |||||||| |||||||||||||||||||| || ||||
Sbjct: 89 tttaaattgaaaggcttgcaaaaagaagttcaagctcctcatcttgagatgttgttctct 30
Query: 1161 tgatggacagcagatgacgaagtttgttt 1189
|||| || | ||||| ||||| ||||||
Sbjct: 29 tgatagataatagatggcgaagcttgttt 1
>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete
sequence
Length = 174910
Score = 71.9 bits (36), Expect = 9e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 1101 tttagattgaaaggcttgcgaagagaagttcgagctcctcatcttgagatgt 1152
|||| |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 39036 tttaaattgaaaggcttgcaaaaagaagttcaagctcctcatcttgagatgt 38985
>gb|AACV01007177.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007177, whole
genome shotgun sequence
Length = 26541
Score = 71.9 bits (36), Expect = 9e-010
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 1101 tttagattgaaaggcttgcgaagagaagttcgagctcctcatcttgagatgt 1152
|||| |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 10390 tttaaattgaaaggcttgcaaaaagaagttcaagctcctcatcttgagatgt 10441
>ref|NT_107174.1| Oryza sativa (japonica cultivar-group)
Length = 4376475
Score = 71.9 bits (36), Expect = 9e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 1101 tttagattgaaaggcttgcgaagagaagttcgagctcctcatcttgagatgt 1152
|||| |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 1771225 tttaaattgaaaggcttgcaaaaagaagttcaagctcctcatcttgagatgt 1771174
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 71.9 bits (36), Expect = 9e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 1101 tttagattgaaaggcttgcgaagagaagttcgagctcctcatcttgagatgt 1152
|||| |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 7659547 tttaaattgaaaggcttgcaaaaagaagttcaagctcctcatcttgagatgt 7659496
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 71.9 bits (36), Expect = 9e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 1101 tttagattgaaaggcttgcgaagagaagttcgagctcctcatcttgagatgt 1152
|||| |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 21710254 tttaaattgaaaggcttgcaaaaagaagttcaagctcctcatcttgagatgt 21710203
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 71.9 bits (36), Expect = 9e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 1101 tttagattgaaaggcttgcgaagagaagttcgagctcctcatcttgagatgt 1152
|||| |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 21176150 tttaaattgaaaggcttgcaaaaagaagttcaagctcctcatcttgagatgt 21176099
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 71.9 bits (36), Expect = 9e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 1101 tttagattgaaaggcttgcgaagagaagttcgagctcctcatcttgagatgt 1152
|||| |||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 21183121 tttaaattgaaaggcttgcaaaaagaagttcaagctcctcatcttgagatgt 21183070
>gb|AU070157.1|AU070157 AU070157 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61516_1A, mRNA sequence
Length = 448
Score = 65.9 bits (33), Expect = 6e-008
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 374 ccatgaggaggccgaacgtctgctggtccgcaaacgtgtaggtgccctgggcgcggccca 433
|||||||||| |||||||||| ||| || || ||||||||| | ||||||||||| ||||
Sbjct: 435 ccatgaggagnccgaacgtcttctgctcggcgaacgtgtagctcccctgggcgcgcccca 376
Query: 434 cctc 437
||||
Sbjct: 375 cctc 372
Score = 63.9 bits (32), Expect = 2e-007
Identities = 105/130 (80%)
Strand = Plus / Minus
Query: 464 tcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggacg 523
||||||||||||||||||||||||||| ||||||||| |||||| ||| ||| | ||
Sbjct: 348 tcgtcagcgggtcgtcgatggccaccacggcgccgaagaaggtggaggagccgttcgtcg 289
Query: 524 ccgccccctgcgcgatgcggatggccgtcgggctcgtccccgccacgatgtcgtggaaga 583
|||| ||||||| | | ||| |||||||| || |||| |||| | |||||||||
Sbjct: 288 acgccgcctgcgccaccctgatcgccgtcggcttcntcccgcccaccacntcgtggaagt 229
Query: 584 acaccttgaa 593
||||||||||
Sbjct: 228 acaccttgaa 219
>gb|AU075460.1|AU075460 AU075460 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60741_1A, mRNA sequence
Length = 424
Score = 60.0 bits (30), Expect = 4e-006
Identities = 107/132 (81%), Gaps = 1/132 (0%)
Strand = Plus / Minus
Query: 463 gtcgtcagcgggtcgtcgatggccaccatcgcgccgaagctggtggacgaggtgttggac 522
||||||||||| |||||||||||||||| ||||||||| |||||| ||| ||| | |
Sbjct: 361 gtcgtcagcggntcgtcgatggccaccacngcgccgaagaaggtggaggagccgttcgtc 302
Query: 523 gccgccccctgcgcgatgcgga-tggccgtcgggctcgtccccgccacgatgtcgtggaa 581
| |||| ||||||| | | || | |||||||| ||||||| |||| | |||||||||
Sbjct: 301 gacgccgcctgcgccaccctgantcgccgtcggcttcgtcccgcccaccacgtcgtggaa 242
Query: 582 gaacaccttgaa 593
| ||||||||||
Sbjct: 241 gtacaccttgaa 230
>emb|AL732638.6|CNS08C9D Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0010K22
of library OSJNBa from chromosome 12 of cultivar
Nipponbare of ssp. japonica of Oryza sativa (rice),
complete sequence
Length = 92728
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 411 gtaggtgccctgggcgcggcccacc 435
|||||||||||||||||||||||||
Sbjct: 50822 gtaggtgccctgggcgcggcccacc 50846
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaag 501
|||||| | |||||||||||||||||| |||||| |||||||||
Sbjct: 50867 ggggcccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 50912
>ref|NT_107157.1| Oryza sativa (japonica cultivar-group)
Length = 959526
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 411 gtaggtgccctgggcgcggcccacc 435
|||||||||||||||||||||||||
Sbjct: 143972 gtaggtgccctgggcgcggcccacc 143948
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaag 501
|||||| | |||||||||||||||||| |||||| |||||||||
Sbjct: 143927 ggggcccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 143882
>gb|AACV01024067.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024067, whole
genome shotgun sequence
Length = 28316
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 411 gtaggtgccctgggcgcggcccacc 435
|||||||||||||||||||||||||
Sbjct: 24403 gtaggtgccctgggcgcggcccacc 24427
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaag 501
|||||| | |||||||||||||||||| |||||| |||||||||
Sbjct: 24448 ggggcccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 24493
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 411 gtaggtgccctgggcgcggcccacc 435
|||||||||||||||||||||||||
Sbjct: 3658049 gtaggtgccctgggcgcggcccacc 3658025
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaag 501
|||||| | |||||||||||||||||| |||||| |||||||||
Sbjct: 3658004 ggggcccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 3657959
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 411 gtaggtgccctgggcgcggcccacc 435
|||||||||||||||||||||||||
Sbjct: 3658049 gtaggtgccctgggcgcggcccacc 3658025
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaag 501
|||||| | |||||||||||||||||| |||||| |||||||||
Sbjct: 3658004 ggggcccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 3657959
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 411 gtaggtgccctgggcgcggcccacc 435
|||||||||||||||||||||||||
Sbjct: 3789223 gtaggtgccctgggcgcggcccacc 3789199
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaag 501
|||||| | |||||||||||||||||| |||||| |||||||||
Sbjct: 3789178 ggggcccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 3789133
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 411 gtaggtgccctgggcgcggcccacc 435
|||||||||||||||||||||||||
Sbjct: 3789197 gtaggtgccctgggcgcggcccacc 3789173
Score = 44.1 bits (22), Expect = 0.21
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 456 ggggcctgtcgtcagcgggtcgtcgatggccaccatcgcgccgaag 501
|||||| | |||||||||||||||||| |||||| |||||||||
Sbjct: 3789152 ggggcccgacgtcagcgggtcgtcgatcaccaccacggcgccgaag 3789107
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,848,274
Number of Sequences: 438736
Number of extensions: 1848274
Number of successful extensions: 13467
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13161
Number of HSP's gapped (non-prelim): 305
length of query: 1448
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1427
effective length of database: 2,791,206,460
effective search space: 3983051618420
effective search space used: 3983051618420
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)