BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3311938.2.2
(860 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP184832.1|BP184832 BP184832 pNS rice panicle cDNA, flow... 88 9e-015
dbj|AK072792.1| Oryza sativa (japonica cultivar-group) cDNA... 88 9e-015
gb|AC107224.2| Oryza sativa (japonica cultivar-group) chrom... 88 9e-015
gb|AACV01005737.1| Oryza sativa (japonica cultivar-group) c... 88 9e-015
gb|AACV01005739.1| Oryza sativa (japonica cultivar-group) c... 88 9e-015
gb|AACV01005740.1| Oryza sativa (japonica cultivar-group) c... 88 9e-015
ref|NM_187639.1| Oryza sativa (japonica cultivar-group), p... 88 9e-015
ref|NM_187643.1| Oryza sativa (japonica cultivar-group), p... 88 9e-015
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 88 9e-015
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 88 9e-015
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 88 9e-015
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 88 9e-015
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 88 9e-015
gb|AU311940.1|AU311940 AU311940 Oryza sativa anther cDNA Or... 80 2e-012
gb|AU182569.1|AU182569 AU182569 Rice panicle at flowering s... 76 4e-011
dbj|AK070187.1| Oryza sativa (japonica cultivar-group) cDNA... 76 4e-011
dbj|AK099112.1| Oryza sativa (japonica cultivar-group) cDNA... 76 4e-011
gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15... 76 4e-011
gb|AACV01022050.1| Oryza sativa (japonica cultivar-group) c... 76 4e-011
ref|NM_197637.1| Oryza sativa (japonica cultivar-group) bet... 76 4e-011
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 76 4e-011
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 76 4e-011
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 76 4e-011
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 76 4e-011
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 76 4e-011
gb|C72628.1|C72628 C72628 Rice panicle at flowering stage O... 64 1e-007
gb|C98558.1|C98558 C98558 Rice panicle at flowering stage O... 64 1e-007
gb|AU063778.1|AU063778 AU063778 Rice panicle at flowering s... 64 1e-007
gb|AU165487.1|AU165487 AU165487 Rice panicle at flowering s... 64 1e-007
gb|AU094059.1|AU094059 AU094059 Rice panicle at flowering s... 62 5e-007
gb|AU165453.1|AU165453 AU165453 Rice panicle at flowering s... 62 5e-007
gb|C71918.1|C71918 C71918 Rice panicle at flowering stage O... 60 2e-006
gb|AZ134444.1|AZ134444 OSJNBb0112C04f CUGI Rice BAC Library... 58 8e-006
dbj|AK069853.1| Oryza sativa (japonica cultivar-group) cDNA... 58 8e-006
gb|AACV01005738.1| Oryza sativa (japonica cultivar-group) c... 58 8e-006
ref|NM_187641.1| Oryza sativa (japonica cultivar-group), p... 58 8e-006
ref|NM_187642.1| Oryza sativa (japonica cultivar-group), p... 58 8e-006
gb|AU094113.1|AU094113 AU094113 Rice panicle at flowering s... 52 5e-004
gb|AU165517.1|AU165517 AU165517 Rice panicle at flowering s... 52 5e-004
gb|AU093825.1|AU093825 AU093825 Rice panicle at flowering s... 50 0.002
gb|AU085857.1|AU085857 AU085857 Rice panicle at flowering s... 48 0.008
gb|AU163583.1|AU163583 AU163583 Rice panicle at flowering s... 48 0.008
dbj|AK101313.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.008
gb|AACV01010248.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
gb|AACV01011389.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
gb|AC119290.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
ref|XM_473433.1| Oryza sativa (japonica cultivar-group), p... 48 0.008
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 48 0.008
gb|CH401195.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromoso... 48 0.008
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 48 0.008
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 48 0.008
gb|AU030829.1|AU030829 AU030829 Rice cDNA from immature lea... 44 0.12
gb|AU101113.1|AU101113 AU101113 Rice panicle at flowering s... 44 0.12
gb|AU165452.1|AU165452 AU165452 Rice panicle at flowering s... 44 0.12
gb|AU184759.1|AU184759 AU184759 Rice root Oryza sativa (jap... 44 0.12
gb|AU198282.1|AU198282 AU198282 Rice green shoot Oryza sati... 44 0.12
gb|CF276870.1|CF276870 14ETL--02-D03.b1 Rice etiolated leaf... 44 0.12
gb|CF277133.1|CF277133 14ETL--02-I21.b1 Rice etiolated leaf... 44 0.12
gb|CF293831.1|CF293831 30DGS--03-C11.b1 Rice leaf plasmid c... 44 0.12
gb|CF311056.1|CF311056 ABF--06-C03.b1 ABF3-overexpressing t... 44 0.12
gb|CF311548.1|CF311548 ABF--06-M21.g1 ABF3-overexpressing t... 44 0.12
gb|CF328550.1|CF328550 NACL--03-I06.b1 Rice callus plasmid ... 44 0.12
gb|CF332237.1|CF332237 NACL--08-K17.g1 Rice callus plasmid ... 44 0.12
gb|CF333825.1|CF333825 JMT--02-N24.b1 AtJMT-overexpressing ... 44 0.12
gb|CD670632.1|CD670632 OsMR047 5MT resistant rice mutant cD... 44 0.12
gb|CD670675.1|CD670675 OsMR090 5MT resistant rice mutant cD... 44 0.12
gb|CV720797.1|CV720797 YBH--01-O04.b1 Rice before heading y... 44 0.12
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 44 0.12
dbj|AK058895.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK061068.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK100959.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK104128.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK105318.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11... 44 0.12
gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I1... 44 0.12
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 44 0.12
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 44 0.12
dbj|AP003875.3| Oryza sativa (japonica cultivar-group) geno... 44 0.12
gb|AACV01005724.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
gb|AACV01017536.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
ref|NM_197698.1| Oryza sativa (japonica cultivar-group) bet... 44 0.12
ref|NM_197699.1| Oryza sativa (japonica cultivar-group) bet... 44 0.12
ref|NM_197700.1| Oryza sativa (japonica cultivar-group) bet... 44 0.12
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.12
gb|CH401229.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.12
gb|C72838.1|C72838 C72838 Rice panicle at flowering stage O... 42 0.49
gb|C98424.1|C98424 C98424 Rice panicle at flowering stage O... 42 0.49
gb|C98492.1|C98492 C98492 Rice panicle at flowering stage O... 42 0.49
gb|C98559.1|C98559 C98559 Rice panicle at flowering stage O... 42 0.49
gb|AU093795.1|AU093795 AU093795 Rice panicle at flowering s... 42 0.49
gb|AU163434.1|AU163434 AU163434 Rice panicle at flowering s... 42 0.49
gb|AU163584.1|AU163584 AU163584 Rice panicle at flowering s... 42 0.49
gb|AU165467.1|AU165467 AU165467 Rice panicle at flowering s... 42 0.49
gb|AU165536.1|AU165536 AU165536 Rice panicle at flowering s... 42 0.49
gb|AU182416.1|AU182416 AU182416 Rice panicle at flowering s... 42 0.49
ref|XM_472504.1| Oryza sativa (japonica cultivar-group), p... 42 0.49
ref|NT_107199.1| Oryza sativa (japonica cultivar-group) 42 0.49
dbj|AP004568.3| Oryza sativa (japonica cultivar-group) geno... 42 0.49
emb|AL663004.3|OSJN00207 Oryza sativa genomic DNA, chromoso... 42 0.49
>gb|BP184832.1|BP184832 BP184832 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 19YPR012, mRNA
sequence
Length = 629
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 328 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 387
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 388 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 439
>dbj|AK072792.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142P17, full
insert sequence
Length = 1164
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 543 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 602
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 603 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 654
>gb|AC107224.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0009C08,
complete sequence
Length = 137033
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 107627 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 107568
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 107567 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 107516
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 97954 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 98013
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 98014 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 98065
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 93291 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 93350
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 93351 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 93402
Score = 58.0 bits (29), Expect = 8e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 226 ctaaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtca 285
||||||||||||||||| | |||||||| | ||||||||||||| | || || | ||||
Sbjct: 103752 ctaaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtca 103811
Query: 286 agtacgtcg 294
|||||||||
Sbjct: 103812 agtacgtcg 103820
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 78 gacatgaactacgagcccattgcggcataccacttcgacct 118
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 97794 gacatgaacgacgagcccatcgctgcctaccacttcgacct 97834
>gb|AACV01005737.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005737,
whole genome shotgun sequence
Length = 580
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 274 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 333
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 334 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 385
>gb|AACV01005739.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005739,
whole genome shotgun sequence
Length = 3939
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 373 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 314
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 313 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 262
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 78 gacatgaactacgagcccattgcggcataccacttcgacct 118
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 533 gacatgaacgacgagcccatcgctgcctaccacttcgacct 493
>gb|AACV01005740.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005740,
whole genome shotgun sequence
Length = 10656
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 305 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 246
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 245 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 194
>ref|NM_187639.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 804
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 509 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 568
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 569 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 620
>ref|NM_187643.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 804
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 509 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 568
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 569 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 620
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 380097 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 380038
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 380037 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 379986
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 370424 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 370483
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 370484 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 370535
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 365761 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 365820
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 365821 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 365872
Score = 58.0 bits (29), Expect = 8e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 226 ctaaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtca 285
||||||||||||||||| | |||||||| | ||||||||||||| | || || | ||||
Sbjct: 376222 ctaaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtca 376281
Query: 286 agtacgtcg 294
|||||||||
Sbjct: 376282 agtacgtcg 376290
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 78 gacatgaactacgagcccattgcggcataccacttcgacct 118
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 370264 gacatgaacgacgagcccatcgctgcctaccacttcgacct 370304
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 168651 taccacttcgacctcagcgg-cacggcgttcggcgccatggc 168691
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 468 gtcatccccgccggctggaagcccaacac 496
||||||||||||| |||| ||||||||||
Sbjct: 169371 gtcatccccgccgactggcagcccaacac 169399
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 396842 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 396783
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 396782 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 396731
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 392921 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 392862
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 392861 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 392810
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 383544 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 383485
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 383484 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 383433
Score = 58.0 bits (29), Expect = 8e-006
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 226 ctaaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtca 285
||||||||||||||||| | |||||||| | ||||||||||||| | || || | ||||
Sbjct: 387356 ctaaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtca 387297
Query: 286 agtacgtcg 294
|||||||||
Sbjct: 387296 agtacgtcg 387288
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 78 gacatgaactacgagcccattgcggcataccacttcgacct 118
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 393081 gacatgaacgacgagcccatcgctgcctaccacttcgacct 393041
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 197889 taccacttcgacctcagcgg-cacggcgttcggcgccatggc 197929
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 468 gtcatccccgccggctggaagcccaacac 496
||||||||||||| |||| ||||||||||
Sbjct: 198609 gtcatccccgccgactggcagcccaacac 198637
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 589204 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 589145
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 589144 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 589093
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 585283 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 585224
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 585223 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 585172
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 575906 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 575847
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 575846 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 575795
Score = 58.0 bits (29), Expect = 8e-006
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 226 ctaaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtca 285
||||||||||||||||| | |||||||| | ||||||||||||| | || || | ||||
Sbjct: 579718 ctaaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtca 579659
Query: 286 agtacgtcg 294
|||||||||
Sbjct: 579658 agtacgtcg 579650
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 78 gacatgaactacgagcccattgcggcataccacttcgacct 118
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 585443 gacatgaacgacgagcccatcgctgcctaccacttcgacct 585403
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 390251 taccacttcgacctcagcgg-cacggcgttcggcgccatggc 390291
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 468 gtcatccccgccggctggaagcccaacac 496
||||||||||||| |||| ||||||||||
Sbjct: 390971 gtcatccccgccgactggcagcccaacac 390999
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 380097 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 380038
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 380037 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 379986
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 370424 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 370483
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 370484 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 370535
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 365761 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 365820
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 365821 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 365872
Score = 58.0 bits (29), Expect = 8e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 226 ctaaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtca 285
||||||||||||||||| | |||||||| | ||||||||||||| | || || | ||||
Sbjct: 376222 ctaaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtca 376281
Query: 286 agtacgtcg 294
|||||||||
Sbjct: 376282 agtacgtcg 376290
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 78 gacatgaactacgagcccattgcggcataccacttcgacct 118
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 370264 gacatgaacgacgagcccatcgctgcctaccacttcgacct 370304
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 168651 taccacttcgacctcagcgg-cacggcgttcggcgccatggc 168691
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 468 gtcatccccgccggctggaagcccaacac 496
||||||||||||| |||| ||||||||||
Sbjct: 169371 gtcatccccgccgactggcagcccaacac 169399
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 380099 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 380040
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 380039 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 379988
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 370426 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 370485
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 370486 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 370537
Score = 87.7 bits (44), Expect = 9e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 232 tcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacg 291
||||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 365763 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 365822
Query: 292 tcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
||| || ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 365823 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 365874
Score = 58.0 bits (29), Expect = 8e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 226 ctaaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtca 285
||||||||||||||||| | |||||||| | ||||||||||||| | || || | ||||
Sbjct: 376224 ctaaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtca 376283
Query: 286 agtacgtcg 294
|||||||||
Sbjct: 376284 agtacgtcg 376292
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 78 gacatgaactacgagcccattgcggcataccacttcgacct 118
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 370266 gacatgaacgacgagcccatcgctgcctaccacttcgacct 370306
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 168651 taccacttcgacctcagcgg-cacggcgttcggcgccatggc 168691
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 468 gtcatccccgccggctggaagcccaacac 496
||||||||||||| |||| ||||||||||
Sbjct: 169371 gtcatccccgccgactggcagcccaacac 169399
>gb|AU311940.1|AU311940 AU311940 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1011, mRNA sequence
Length = 436
Score = 79.8 bits (40), Expect = 2e-012
Identities = 91/108 (84%)
Strand = Plus / Plus
Query: 236 cttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagtacgtcga 295
||||||| | ||||||| | ||||||||||||||| || ||| | |||||||||||||
Sbjct: 2 cttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacgtcgc 61
Query: 296 cggcgatggcgacattgtggcggtggacatcaaggagaagggctccga 343
|| ||||| ||| | |||| |||||| ||||||||||||||||||||
Sbjct: 62 tggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccga 109
>gb|AU182569.1|AU182569 AU182569 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4331, mRNA sequence
Length = 445
Score = 75.8 bits (38), Expect = 4e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgacctagcggg 124
||||| ||| ||||||||||||||||||||||| |||| |||||||||||| | | ||
Sbjct: 137 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 196
Query: 125 cacggcgttcggtgccatggct 146
|| ||||||||| |||||||||
Sbjct: 197 caaggcgttcggcgccatggct 218
Score = 61.9 bits (31), Expect = 5e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 306 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 365
Query: 288 tacgtcg 294
| |||||
Sbjct: 366 ttcgtcg 372
>dbj|AK070187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043G12, full
insert sequence
Length = 1121
Score = 75.8 bits (38), Expect = 4e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgacctagcggg 124
||||| ||| ||||||||||||||||||||||| |||| |||||||||||| | | ||
Sbjct: 409 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 468
Query: 125 cacggcgttcggtgccatggct 146
|| ||||||||| |||||||||
Sbjct: 469 caaggcgttcggcgccatggct 490
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
|||||||||| |||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 578 aaggtcacctcccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 637
Query: 288 tacgtcg 294
| |||||
Sbjct: 638 ttcgtcg 644
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 719 tggggcgccatctggaggatggaca 743
>dbj|AK099112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033P05, full
insert sequence
Length = 1071
Score = 75.8 bits (38), Expect = 4e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgacctagcggg 124
||||| ||| ||||||||||||||||||||||| |||| |||||||||||| | | ||
Sbjct: 409 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 468
Query: 125 cacggcgttcggtgccatggct 146
|| ||||||||| |||||||||
Sbjct: 469 caaggcgttcggcgccatggct 490
Score = 61.9 bits (31), Expect = 5e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 578 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 637
Query: 288 tacgtcg 294
| |||||
Sbjct: 638 ttcgtcg 644
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 719 tggggcgccatctggaggatggaca 743
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
sequence
Length = 158550
Score = 75.8 bits (38), Expect = 4e-011
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgacctagcggg 124
||||| ||| ||||||||||||||||||||||| |||| |||||||||||| | | ||
Sbjct: 117490 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 117431
Query: 125 cacggcgttcggtgccatggct 146
|| ||||||||| |||||||||
Sbjct: 117430 caaggcgttcggcgccatggct 117409
Score = 61.9 bits (31), Expect = 5e-007
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 117321 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 117262
Query: 288 tacgtcg 294
| |||||
Sbjct: 117261 ttcgtcg 117255
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 117180 tggggcgccatctggaggatggaca 117156
>gb|AACV01022050.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022050, whole
genome shotgun sequence
Length = 7523
Score = 75.8 bits (38), Expect = 4e-011
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgacctagcggg 124
||||| ||| ||||||||||||||||||||||| |||| |||||||||||| | | ||
Sbjct: 1400 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 1341
Query: 125 cacggcgttcggtgccatggct 146
|| ||||||||| |||||||||
Sbjct: 1340 caaggcgttcggcgccatggct 1319
Score = 61.9 bits (31), Expect = 5e-007
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 1231 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 1172
Query: 288 tacgtcg 294
| |||||
Sbjct: 1171 ttcgtcg 1165
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 1090 tggggcgccatctggaggatggaca 1066
>ref|NM_197637.1| Oryza sativa (japonica cultivar-group) beta-expansin
(OSJNBa0082M15.4), mRNA
Length = 1148
Score = 75.8 bits (38), Expect = 4e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgacctagcggg 124
||||| ||| ||||||||||||||||||||||| |||| |||||||||||| | | ||
Sbjct: 393 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 452
Query: 125 cacggcgttcggtgccatggct 146
|| ||||||||| |||||||||
Sbjct: 453 caaggcgttcggcgccatggct 474
Score = 61.9 bits (31), Expect = 5e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 562 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 621
Query: 288 tacgtcg 294
| |||||
Sbjct: 622 ttcgtcg 628
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 703 tggggcgccatctggaggatggaca 727
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 75.8 bits (38), Expect = 4e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgacctagcggg 124
||||| ||| ||||||||||||||||||||||| |||| |||||||||||| | | ||
Sbjct: 2869095 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 2869154
Query: 125 cacggcgttcggtgccatggct 146
|| ||||||||| |||||||||
Sbjct: 2869155 caaggcgttcggcgccatggct 2869176
Score = 61.9 bits (31), Expect = 5e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 2869264 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 2869323
Query: 288 tacgtcg 294
| |||||
Sbjct: 2869324 ttcgtcg 2869330
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 3252015 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 3251975
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 3239797 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 3239757
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 3233938 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 3233898
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 2869405 tggggcgccatctggaggatggaca 2869429
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 75.8 bits (38), Expect = 4e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgacctagcggg 124
||||| ||| ||||||||||||||||||||||| |||| |||||||||||| | | ||
Sbjct: 8898809 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 8898868
Query: 125 cacggcgttcggtgccatggct 146
|| ||||||||| |||||||||
Sbjct: 8898869 caaggcgttcggcgccatggct 8898890
Score = 61.9 bits (31), Expect = 5e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 8898978 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 8899037
Query: 288 tacgtcg 294
| |||||
Sbjct: 8899038 ttcgtcg 8899044
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 9305174 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 9305134
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 9292956 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 9292916
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 9287097 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 9287057
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 8899119 tggggcgccatctggaggatggaca 8899143
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 75.8 bits (38), Expect = 4e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgacctagcggg 124
||||| ||| ||||||||||||||||||||||| |||| |||||||||||| | | ||
Sbjct: 19764603 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 19764662
Query: 125 cacggcgttcggtgccatggct 146
|| ||||||||| |||||||||
Sbjct: 19764663 caaggcgttcggcgccatggct 19764684
Score = 61.9 bits (31), Expect = 5e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 19764772 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 19764831
Query: 288 tacgtcg 294
| |||||
Sbjct: 19764832 ttcgtcg 19764838
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 20170968 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 20170928
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 20158750 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 20158710
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 20152891 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 20152851
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 19764913 tggggcgccatctggaggatggaca 19764937
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 75.8 bits (38), Expect = 4e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgacctagcggg 124
||||| ||| ||||||||||||||||||||||| |||| |||||||||||| | | ||
Sbjct: 20946901 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 20946960
Query: 125 cacggcgttcggtgccatggct 146
|| ||||||||| |||||||||
Sbjct: 20946961 caaggcgttcggcgccatggct 20946982
Score = 61.9 bits (31), Expect = 5e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 20947070 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 20947129
Query: 288 tacgtcg 294
| |||||
Sbjct: 20947130 ttcgtcg 20947136
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 21329821 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 21329781
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 21317603 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 21317563
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 21311744 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 21311704
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 20947211 tggggcgccatctggaggatggaca 20947235
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 75.8 bits (38), Expect = 4e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgacctagcggg 124
||||| ||| ||||||||||||||||||||||| |||| |||||||||||| | | ||
Sbjct: 20958165 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 20958224
Query: 125 cacggcgttcggtgccatggct 146
|| ||||||||| |||||||||
Sbjct: 20958225 caaggcgttcggcgccatggct 20958246
Score = 61.9 bits (31), Expect = 5e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 20958334 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 20958393
Query: 288 tacgtcg 294
| |||||
Sbjct: 20958394 ttcgtcg 20958400
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 21341085 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 21341045
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 21328867 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 21328827
Score = 44.1 bits (22), Expect = 0.12
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 105 taccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||||| ||||| |||||||||||| ||||||||
Sbjct: 21323008 taccacttcgacctgagcgg-cacggcgttcggcgccatggc 21322968
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 20958475 tggggcgccatctggaggatggaca 20958499
>gb|C72628.1|C72628 C72628 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1957_1A, mRNA sequence
Length = 456
Score = 63.9 bits (32), Expect = 1e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgac 116
||||| ||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 314 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgac 365
>gb|C98558.1|C98558 C98558 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0407_5A, mRNA sequence
Length = 462
Score = 63.9 bits (32), Expect = 1e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgac 116
||||| ||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 395 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgac 446
>gb|AU063778.1|AU063778 AU063778 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0445_5A, mRNA sequence
Length = 475
Score = 63.9 bits (32), Expect = 1e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgac 116
||||| ||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 391 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgac 442
>gb|AU165487.1|AU165487 AU165487 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1554, mRNA sequence
Length = 492
Score = 63.9 bits (32), Expect = 1e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 65 ggtgtacattacggacatgaactacgagcccattgcggcataccacttcgac 116
||||| ||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 390 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgac 441
>gb|AU094059.1|AU094059 AU094059 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2136, mRNA sequence
Length = 711
Score = 61.9 bits (31), Expect = 5e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 156 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 215
Query: 288 tacgtcg 294
| |||||
Sbjct: 216 ttcgtcg 222
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 297 tggggcgccatctggaggatggaca 321
>gb|AU165453.1|AU165453 AU165453 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1237, mRNA sequence
Length = 561
Score = 61.9 bits (31), Expect = 5e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
||||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 5 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 64
Query: 288 tacgtcg 294
| |||||
Sbjct: 65 ttcgtcg 71
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 145 tggggcgccatctggaggatggaca 169
>gb|C71918.1|C71918 C71918 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0610_1A, mRNA sequence
Length = 295
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 75 acggacatgaactacgagcccattgcggcataccacttcgac 116
||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 230 acggacatgaactacgagcccatctcggcgtaccacttcgac 271
>gb|AZ134444.1|AZ134444 OSJNBb0112C04f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0112C04f, DNA
sequence
Length = 375
Score = 58.0 bits (29), Expect = 8e-006
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 226 ctaaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtca 285
||||||||||||||||| | |||||||| | ||||||||||||| | || || | ||||
Sbjct: 349 ctaaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtca 290
Query: 286 agtacgtcg 294
|||||||||
Sbjct: 289 agtacgtcg 281
>dbj|AK069853.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036C07, full
insert sequence
Length = 1101
Score = 58.0 bits (29), Expect = 8e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 226 ctaaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtca 285
||||||||||||||||| | |||||||| | ||||||||||||| | || || | ||||
Sbjct: 538 ctaaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtca 597
Query: 286 agtacgtcg 294
|||||||||
Sbjct: 598 agtacgtcg 606
>gb|AACV01005738.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005738, whole
genome shotgun sequence
Length = 8631
Score = 58.0 bits (29), Expect = 8e-006
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 226 ctaaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtca 285
||||||||||||||||| | |||||||| | ||||||||||||| | || || | ||||
Sbjct: 3489 ctaaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtca 3430
Query: 286 agtacgtcg 294
|||||||||
Sbjct: 3429 agtacgtcg 3421
>ref|NM_187641.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 687
Score = 58.0 bits (29), Expect = 8e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 283 tcaagtacgtcgacggcgatggcgacattgtggcggtggacatcaaggagaagggctccg 342
|||||||||||| || ||||| ||| | |||| |||||| |||||||||||||||||||
Sbjct: 443 tcaagtacgtcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctccg 502
Query: 343 a 343
|
Sbjct: 503 a 503
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 78 gacatgaactacgagcccattgcggcataccacttcgacct 118
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 349 gacatgaacgacgagcccatcgctgcctaccacttcgacct 389
>ref|NM_187642.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 804
Score = 58.0 bits (29), Expect = 8e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 226 ctaaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtca 285
||||||||||||||||| | |||||||| | ||||||||||||| | || || | ||||
Sbjct: 503 ctaaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtca 562
Query: 286 agtacgtcg 294
|||||||||
Sbjct: 563 agtacgtcg 571
>gb|AU094113.1|AU094113 AU094113 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2534, mRNA sequence
Length = 531
Score = 52.0 bits (26), Expect = 5e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 229 aggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaagt 288
|||||||||||||| | |||||||| | ||||||||||||| | || || | |||||||
Sbjct: 1 aggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaagt 60
Query: 289 acgtcg 294
||||||
Sbjct: 61 acgtcg 66
>gb|AU165517.1|AU165517 AU165517 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2044, mRNA sequence
Length = 672
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactac 269
||||||||||||||| | |||||||| | |||||||||||||
Sbjct: 110 aaggtcaccttccacgtcgagaagggctccaaccccaactac 151
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 251 tggggcgccatctggaggatggaca 275
>gb|AU093825.1|AU093825 AU093825 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0657, mRNA sequence
Length = 578
Score = 50.1 bits (25), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 228 aaggtcaccttccacttggagaaggggtgcaaccccaactacctggccctgttggtcaag 287
|||||||| |||||| | |||||||| | ||||||||| ||||| ||| || | ||||||
Sbjct: 23 aaggtcactttccacgtcgagaagggntccaaccccaantacctcgccgtgctcgtcaag 82
Query: 288 tacgtcg 294
| |||||
Sbjct: 83 ttcgtcg 89
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 369 tggggcgccatctggaggaaggaca 393
||||||||||||||||||| |||||
Sbjct: 164 tggggcgccatctggaggatggaca 188
>gb|AU085857.1|AU085857 AU085857 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1196, mRNA sequence
Length = 566
Score = 48.1 bits (24), Expect = 0.008
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 312 gtggcggtggacatcaaggagaagggctccga 343
|||| |||||| ||||||||||||||||||||
Sbjct: 21 gtggaggtggaaatcaaggagaagggctccga 52
>gb|AU163583.1|AU163583 AU163583 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2227, mRNA sequence
Length = 423
Score = 48.1 bits (24), Expect = 0.008
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 66 gtgtacattacggacatgaactacgagcccat 97
|||| ||| |||||||||||||||||||||||
Sbjct: 379 gtgttcatcacggacatgaactacgagcccat 410
>dbj|AK101313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034A12, full
insert sequence
Length = 1250
Score = 48.1 bits (24), Expect = 0.008
Identities = 38/40 (95%), Gaps = 2/40 (5%)
Strand = Plus / Plus
Query: 107 ccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||| |||||| ||||||||||||||||||||
Sbjct: 471 ccacttcgacctgagcggg-acggcgttcggtgccatggc 509
>gb|AACV01010248.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010248, whole
genome shotgun sequence
Length = 37264
Score = 48.1 bits (24), Expect = 0.008
Identities = 38/40 (95%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 107 ccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1702 ccacttcgacctgagcgg-cacggcgttcggtgccatggc 1664
>gb|AACV01011389.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011389, whole
genome shotgun sequence
Length = 22266
Score = 48.1 bits (24), Expect = 0.008
Identities = 38/40 (95%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 107 ccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||| |||||| ||||||||||||||||||||
Sbjct: 4199 ccacttcgacctgagcggg-acggcgttcggtgccatggc 4161
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06,
complete sequence
Length = 144457
Score = 48.1 bits (24), Expect = 0.008
Identities = 38/40 (95%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 107 ccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||| |||||| ||||||||||||||||||||
Sbjct: 103339 ccacttcgacctgagcggg-acggcgttcggtgccatggc 103301
>ref|XM_473433.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 795
Score = 48.1 bits (24), Expect = 0.008
Identities = 38/40 (95%), Gaps = 2/40 (5%)
Strand = Plus / Plus
Query: 107 ccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||| ||||| |||||||||||||||||||||
Sbjct: 372 ccacttcgacctgagcgg-cacggcgttcggtgccatggc 410
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 48.1 bits (24), Expect = 0.008
Identities = 38/40 (95%), Gaps = 2/40 (5%)
Strand = Plus / Plus
Query: 107 ccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1396440 ccacttcgacctgagcgg-cacggcgttcggtgccatggc 1396478
>gb|CH401195.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000032 genomic
scaffold, whole genome shotgun sequence
Length = 1766531
Score = 48.1 bits (24), Expect = 0.008
Identities = 38/40 (95%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 107 ccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||| |||||| ||||||||||||||||||||
Sbjct: 1013174 ccacttcgacctgagcggg-acggcgttcggtgccatggc 1013136
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 48.1 bits (24), Expect = 0.008
Identities = 38/40 (95%), Gaps = 2/40 (5%)
Strand = Plus / Plus
Query: 107 ccacttcgacct-agcgggcacggcgttcggtgccatggc 145
|||||||||||| ||||| |||||||||||||||||||||
Sbjct: 5434005 ccacttcgacctgagcgg-cacggcgttcggtgccatggc 5434043
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,275,466
Number of Sequences: 438736
Number of extensions: 1275466
Number of successful extensions: 7794
Number of sequences better than 0.5: 111
Number of HSP's better than 0.5 without gapping: 73
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 7285
Number of HSP's gapped (non-prelim): 550
length of query: 860
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 839
effective length of database: 2,791,206,460
effective search space: 2341822219940
effective search space used: 2341822219940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)