BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3311938.2.1
(1003 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|C72276.1|C72276 C72276 Rice panicle at flowering stage O... 82 7e-013
gb|C72950.1|C72950 C72950 Rice panicle at flowering stage O... 82 7e-013
gb|AU069745.1|AU069745 AU069745 Rice panicle at flowering s... 82 7e-013
gb|BP184832.1|BP184832 BP184832 pNS rice panicle cDNA, flow... 82 7e-013
dbj|AK069853.1| Oryza sativa (japonica cultivar-group) cDNA... 82 7e-013
dbj|AK072792.1| Oryza sativa (japonica cultivar-group) cDNA... 82 7e-013
gb|AC107224.2| Oryza sativa (japonica cultivar-group) chrom... 82 7e-013
gb|AACV01005737.1| Oryza sativa (japonica cultivar-group) c... 82 7e-013
gb|AACV01005738.1| Oryza sativa (japonica cultivar-group) c... 82 7e-013
gb|AACV01005739.1| Oryza sativa (japonica cultivar-group) c... 82 7e-013
gb|AACV01005740.1| Oryza sativa (japonica cultivar-group) c... 82 7e-013
ref|NM_187639.1| Oryza sativa (japonica cultivar-group), p... 82 7e-013
ref|NM_187642.1| Oryza sativa (japonica cultivar-group), p... 82 7e-013
ref|NM_187643.1| Oryza sativa (japonica cultivar-group), p... 82 7e-013
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 82 7e-013
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 82 7e-013
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 82 7e-013
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 82 7e-013
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 82 7e-013
gb|AU311940.1|AU311940 AU311940 Oryza sativa anther cDNA Or... 80 3e-012
gb|AU182569.1|AU182569 AU182569 Rice panicle at flowering s... 74 2e-010
dbj|AK070187.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
dbj|AK099112.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15... 74 2e-010
gb|AACV01022050.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
ref|NM_197637.1| Oryza sativa (japonica cultivar-group) bet... 74 2e-010
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 74 2e-010
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
gb|C72628.1|C72628 C72628 Rice panicle at flowering stage O... 64 2e-007
gb|C98558.1|C98558 C98558 Rice panicle at flowering stage O... 64 2e-007
gb|AU063778.1|AU063778 AU063778 Rice panicle at flowering s... 64 2e-007
gb|AU165487.1|AU165487 AU165487 Rice panicle at flowering s... 64 2e-007
gb|C71918.1|C71918 C71918 Rice panicle at flowering stage O... 62 6e-007
ref|NM_187641.1| Oryza sativa (japonica cultivar-group), p... 60 2e-006
gb|AU030829.1|AU030829 AU030829 Rice cDNA from immature lea... 54 2e-004
gb|CF276870.1|CF276870 14ETL--02-D03.b1 Rice etiolated leaf... 54 2e-004
gb|CF277133.1|CF277133 14ETL--02-I21.b1 Rice etiolated leaf... 54 2e-004
gb|CF293831.1|CF293831 30DGS--03-C11.b1 Rice leaf plasmid c... 54 2e-004
gb|CF311056.1|CF311056 ABF--06-C03.b1 ABF3-overexpressing t... 54 2e-004
gb|CF311548.1|CF311548 ABF--06-M21.g1 ABF3-overexpressing t... 54 2e-004
gb|CF328550.1|CF328550 NACL--03-I06.b1 Rice callus plasmid ... 54 2e-004
gb|CF332237.1|CF332237 NACL--08-K17.g1 Rice callus plasmid ... 54 2e-004
gb|CF333825.1|CF333825 JMT--02-N24.b1 AtJMT-overexpressing ... 54 2e-004
gb|CD670675.1|CD670675 OsMR090 5MT resistant rice mutant cD... 54 2e-004
gb|CV720797.1|CV720797 YBH--01-O04.b1 Rice before heading y... 54 2e-004
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 54 2e-004
dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK100959.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK105318.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11... 54 2e-004
gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I1... 54 2e-004
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 54 2e-004
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 54 2e-004
gb|AACV01005724.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
ref|NM_197698.1| Oryza sativa (japonica cultivar-group) bet... 54 2e-004
ref|NM_197700.1| Oryza sativa (japonica cultivar-group) bet... 54 2e-004
gb|CD670632.1|CD670632 OsMR047 5MT resistant rice mutant cD... 52 6e-004
dbj|AP003875.3| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
gb|AACV01017536.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 52 6e-004
gb|CH401229.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
gb|AU085857.1|AU085857 AU085857 Rice panicle at flowering s... 50 0.002
gb|AU094059.1|AU094059 AU094059 Rice panicle at flowering s... 50 0.002
gb|AU165453.1|AU165453 AU165453 Rice panicle at flowering s... 50 0.002
gb|AZ134444.1|AZ134444 OSJNBb0112C04f CUGI Rice BAC Library... 48 0.009
gb|AACV01010248.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
ref|XM_473433.1| Oryza sativa (japonica cultivar-group), p... 48 0.009
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 48 0.009
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromoso... 48 0.009
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|AU184759.1|AU184759 AU184759 Rice root Oryza sativa (jap... 46 0.037
gb|AU198282.1|AU198282 AU198282 Rice green shoot Oryza sati... 46 0.037
dbj|AK058895.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.037
dbj|AK061068.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.037
dbj|AK104128.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.037
ref|NM_197699.1| Oryza sativa (japonica cultivar-group) bet... 46 0.037
gb|AU165517.1|AU165517 AU165517 Rice panicle at flowering s... 44 0.14
>gb|C72276.1|C72276 C72276 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1347_1A, mRNA sequence
Length = 443
Score = 81.8 bits (41), Expect = 7e-013
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccaacaggtgccggcccggacgacaatggtggcggatgtgggtacaag 260
||||| |||||||||| ||||||||||| |||||||| || |||| ||||||||||||
Sbjct: 161 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 220
Query: 261 gacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccctatcttcaag 320
||| | ||||||| || ||| | ||||| | |||||||||| | |||||||||||||
Sbjct: 221 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 280
Query: 321 gatgg 325
|||||
Sbjct: 281 gatgg 285
>gb|C72950.1|C72950 C72950 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2534_2A, mRNA sequence
Length = 364
Score = 81.8 bits (41), Expect = 7e-013
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccaacaggtgccggcccggacgacaatggtggcggatgtgggtacaag 260
||||| |||||||||| ||||||||||| |||||||| || |||| ||||||||||||
Sbjct: 150 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 209
Query: 261 gacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccctatcttcaag 320
||| | ||||||| || ||| | ||||| | |||||||||| | |||||||||||||
Sbjct: 210 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 269
Query: 321 gatgg 325
|||||
Sbjct: 270 gatgg 274
>gb|AU069745.1|AU069745 AU069745 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1413_3A, mRNA sequence
Length = 395
Score = 81.8 bits (41), Expect = 7e-013
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccaacaggtgccggcccggacgacaatggtggcggatgtgggtacaag 260
||||| |||||||||| ||||||||||| |||||||| || |||| ||||||||||||
Sbjct: 157 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 216
Query: 261 gacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccctatcttcaag 320
||| | ||||||| || ||| | ||||| | |||||||||| | |||||||||||||
Sbjct: 217 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 276
Query: 321 gatgg 325
|||||
Sbjct: 277 gatgg 281
>gb|BP184832.1|BP184832 BP184832 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 19YPR012, mRNA
sequence
Length = 629
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 328 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 387
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 388 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 436
>dbj|AK069853.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036C07, full
insert sequence
Length = 1101
Score = 81.8 bits (41), Expect = 7e-013
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccaacaggtgccggcccggacgacaatggtggcggatgtgggtacaag 260
||||| |||||||||| ||||||||||| |||||||| || |||| ||||||||||||
Sbjct: 177 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 236
Query: 261 gacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccctatcttcaag 320
||| | ||||||| || ||| | ||||| | |||||||||| | |||||||||||||
Sbjct: 237 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 296
Query: 321 gatgg 325
|||||
Sbjct: 297 gatgg 301
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 556 ctaaggtcaccttccatttggagaagggatgcaaccccaactac 599
|||||||||||||||| | |||||||| | |||||||||||||
Sbjct: 538 ctaaggtcaccttccacgttgagaagggctccaaccccaactac 581
>dbj|AK072792.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142P17, full
insert sequence
Length = 1164
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 543 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 602
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 603 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 651
>gb|AC107224.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0009C08,
complete sequence
Length = 137033
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 107627 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 107568
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 107567 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 107519
Score = 81.8 bits (41), Expect = 7e-013
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccaacaggtgccggcccggacgacaatggtggcggatgtgggtacaag 260
||||| |||||||||| ||||||||||| |||||||| || |||| ||||||||||||
Sbjct: 103391 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 103450
Query: 261 gacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccctatcttcaag 320
||| | ||||||| || ||| | ||||| | |||||||||| | |||||||||||||
Sbjct: 103451 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 103510
Query: 321 gatgg 325
|||||
Sbjct: 103511 gatgg 103515
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 97954 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 98013
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 98014 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 98062
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 93291 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 93350
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 93351 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 93399
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgacct 448
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 97794 gacatgaacgacgagcccatcgctgcctaccacttcgacct 97834
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 556 ctaaggtcaccttccatttggagaagggatgcaaccccaactac 599
|||||||||||||||| | |||||||| | |||||||||||||
Sbjct: 103752 ctaaggtcaccttccacgttgagaagggctccaaccccaactac 103795
Score = 44.1 bits (22), Expect = 0.14
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 699 tggggcgccatctggaggaaggatagcgacaagccgatcaagggacccatcaccgtccga 758
||||| ||||||||||||| || | | ||||||| ||||||| ||| || |||||||
Sbjct: 98091 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 98150
Query: 759 ctcaccaccgaggg 772
|||||||||||||
Sbjct: 98151 gtcaccaccgaggg 98164
>gb|AACV01005737.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005737,
whole genome shotgun sequence
Length = 580
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 274 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 333
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 334 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 382
>gb|AACV01005738.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005738, whole
genome shotgun sequence
Length = 8631
Score = 81.8 bits (41), Expect = 7e-013
Identities = 104/125 (83%)
Strand = Plus / Minus
Query: 201 tggtatggcaagccaacaggtgccggcccggacgacaatggtggcggatgtgggtacaag 260
||||| |||||||||| ||||||||||| |||||||| || |||| ||||||||||||
Sbjct: 3850 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 3791
Query: 261 gacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccctatcttcaag 320
||| | ||||||| || ||| | ||||| | |||||||||| | |||||||||||||
Sbjct: 3790 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 3731
Query: 321 gatgg 325
|||||
Sbjct: 3730 gatgg 3726
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 556 ctaaggtcaccttccatttggagaagggatgcaaccccaactac 599
|||||||||||||||| | |||||||| | |||||||||||||
Sbjct: 3489 ctaaggtcaccttccacgttgagaagggctccaaccccaactac 3446
>gb|AACV01005739.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005739,
whole genome shotgun sequence
Length = 3939
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 373 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 314
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 313 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 265
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgacct 448
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 533 gacatgaacgacgagcccatcgctgcctaccacttcgacct 493
Score = 44.1 bits (22), Expect = 0.14
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 699 tggggcgccatctggaggaaggatagcgacaagccgatcaagggacccatcaccgtccga 758
||||| ||||||||||||| || | | ||||||| ||||||| ||| || |||||||
Sbjct: 236 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 177
Query: 759 ctcaccaccgaggg 772
|||||||||||||
Sbjct: 176 gtcaccaccgaggg 163
>gb|AACV01005740.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005740,
whole genome shotgun sequence
Length = 10656
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 305 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 246
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 245 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 197
>ref|NM_187639.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 804
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 509 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 568
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 569 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 617
>ref|NM_187642.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 804
Score = 81.8 bits (41), Expect = 7e-013
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccaacaggtgccggcccggacgacaatggtggcggatgtgggtacaag 260
||||| |||||||||| ||||||||||| |||||||| || |||| ||||||||||||
Sbjct: 142 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 201
Query: 261 gacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccctatcttcaag 320
||| | ||||||| || ||| | ||||| | |||||||||| | |||||||||||||
Sbjct: 202 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 261
Query: 321 gatgg 325
|||||
Sbjct: 262 gatgg 266
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 556 ctaaggtcaccttccatttggagaagggatgcaaccccaactac 599
|||||||||||||||| | |||||||| | |||||||||||||
Sbjct: 503 ctaaggtcaccttccacgttgagaagggctccaaccccaactac 546
>ref|NM_187643.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 804
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 509 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 568
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 569 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 617
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 380097 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 380038
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 380037 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 379989
Score = 81.8 bits (41), Expect = 7e-013
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccaacaggtgccggcccggacgacaatggtggcggatgtgggtacaag 260
||||| |||||||||| ||||||||||| |||||||| || |||| ||||||||||||
Sbjct: 375861 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 375920
Query: 261 gacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccctatcttcaag 320
||| | ||||||| || ||| | ||||| | |||||||||| | |||||||||||||
Sbjct: 375921 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 375980
Query: 321 gatgg 325
|||||
Sbjct: 375981 gatgg 375985
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 370424 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 370483
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 370484 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 370532
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 365761 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 365820
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 365821 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 365869
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 168650 gtaccacttcgacctcagc-ggcacggcgttcggcgccatggccaag 168695
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgacct 448
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 370264 gacatgaacgacgagcccatcgctgcctaccacttcgacct 370304
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 556 ctaaggtcaccttccatttggagaagggatgcaaccccaactac 599
|||||||||||||||| | |||||||| | |||||||||||||
Sbjct: 376222 ctaaggtcaccttccacgttgagaagggctccaaccccaactac 376265
Score = 44.1 bits (22), Expect = 0.14
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 699 tggggcgccatctggaggaaggatagcgacaagccgatcaagggacccatcaccgtccga 758
||||| ||||||||||||| || | | ||||||| ||||||| ||| || |||||||
Sbjct: 370561 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 370620
Query: 759 ctcaccaccgaggg 772
|||||||||||||
Sbjct: 370621 gtcaccaccgaggg 370634
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 396842 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 396783
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 396782 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 396734
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 392921 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 392862
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 392861 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 392813
Score = 81.8 bits (41), Expect = 7e-013
Identities = 104/125 (83%)
Strand = Plus / Minus
Query: 201 tggtatggcaagccaacaggtgccggcccggacgacaatggtggcggatgtgggtacaag 260
||||| |||||||||| ||||||||||| |||||||| || |||| ||||||||||||
Sbjct: 387717 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 387658
Query: 261 gacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccctatcttcaag 320
||| | ||||||| || ||| | ||||| | |||||||||| | |||||||||||||
Sbjct: 387657 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 387598
Query: 321 gatgg 325
|||||
Sbjct: 387597 gatgg 387593
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 383544 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 383485
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 383484 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 383436
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 197888 gtaccacttcgacctcagc-ggcacggcgttcggcgccatggccaag 197933
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgacct 448
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 393081 gacatgaacgacgagcccatcgctgcctaccacttcgacct 393041
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 556 ctaaggtcaccttccatttggagaagggatgcaaccccaactac 599
|||||||||||||||| | |||||||| | |||||||||||||
Sbjct: 387356 ctaaggtcaccttccacgttgagaagggctccaaccccaactac 387313
Score = 44.1 bits (22), Expect = 0.14
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 699 tggggcgccatctggaggaaggatagcgacaagccgatcaagggacccatcaccgtccga 758
||||| ||||||||||||| || | | ||||||| ||||||| ||| || |||||||
Sbjct: 392784 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 392725
Query: 759 ctcaccaccgaggg 772
|||||||||||||
Sbjct: 392724 gtcaccaccgaggg 392711
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 589204 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 589145
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 589144 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 589096
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 585283 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 585224
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 585223 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 585175
Score = 81.8 bits (41), Expect = 7e-013
Identities = 104/125 (83%)
Strand = Plus / Minus
Query: 201 tggtatggcaagccaacaggtgccggcccggacgacaatggtggcggatgtgggtacaag 260
||||| |||||||||| ||||||||||| |||||||| || |||| ||||||||||||
Sbjct: 580079 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 580020
Query: 261 gacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccctatcttcaag 320
||| | ||||||| || ||| | ||||| | |||||||||| | |||||||||||||
Sbjct: 580019 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 579960
Query: 321 gatgg 325
|||||
Sbjct: 579959 gatgg 579955
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 575906 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 575847
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 575846 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 575798
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 390250 gtaccacttcgacctcagc-ggcacggcgttcggcgccatggccaag 390295
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgacct 448
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 585443 gacatgaacgacgagcccatcgctgcctaccacttcgacct 585403
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 556 ctaaggtcaccttccatttggagaagggatgcaaccccaactac 599
|||||||||||||||| | |||||||| | |||||||||||||
Sbjct: 579718 ctaaggtcaccttccacgttgagaagggctccaaccccaactac 579675
Score = 44.1 bits (22), Expect = 0.14
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 699 tggggcgccatctggaggaaggatagcgacaagccgatcaagggacccatcaccgtccga 758
||||| ||||||||||||| || | | ||||||| ||||||| ||| || |||||||
Sbjct: 585146 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 585087
Query: 759 ctcaccaccgaggg 772
|||||||||||||
Sbjct: 585086 gtcaccaccgaggg 585073
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 380097 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 380038
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 380037 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 379989
Score = 81.8 bits (41), Expect = 7e-013
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccaacaggtgccggcccggacgacaatggtggcggatgtgggtacaag 260
||||| |||||||||| ||||||||||| |||||||| || |||| ||||||||||||
Sbjct: 375861 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 375920
Query: 261 gacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccctatcttcaag 320
||| | ||||||| || ||| | ||||| | |||||||||| | |||||||||||||
Sbjct: 375921 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 375980
Query: 321 gatgg 325
|||||
Sbjct: 375981 gatgg 375985
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 370424 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 370483
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 370484 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 370532
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 365761 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 365820
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 365821 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 365869
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 168650 gtaccacttcgacctcagc-ggcacggcgttcggcgccatggccaag 168695
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgacct 448
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 370264 gacatgaacgacgagcccatcgctgcctaccacttcgacct 370304
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 556 ctaaggtcaccttccatttggagaagggatgcaaccccaactac 599
|||||||||||||||| | |||||||| | |||||||||||||
Sbjct: 376222 ctaaggtcaccttccacgttgagaagggctccaaccccaactac 376265
Score = 44.1 bits (22), Expect = 0.14
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 699 tggggcgccatctggaggaaggatagcgacaagccgatcaagggacccatcaccgtccga 758
||||| ||||||||||||| || | | ||||||| ||||||| ||| || |||||||
Sbjct: 370561 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 370620
Query: 759 ctcaccaccgaggg 772
|||||||||||||
Sbjct: 370621 gtcaccaccgaggg 370634
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 380099 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 380040
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 380039 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 379991
Score = 81.8 bits (41), Expect = 7e-013
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccaacaggtgccggcccggacgacaatggtggcggatgtgggtacaag 260
||||| |||||||||| ||||||||||| |||||||| || |||| ||||||||||||
Sbjct: 375863 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 375922
Query: 261 gacgtgaacaaggcccctttcaacagcatgggcgcatgtggcaacgtccctatcttcaag 320
||| | ||||||| || ||| | ||||| | |||||||||| | |||||||||||||
Sbjct: 375923 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 375982
Query: 321 gatgg 325
|||||
Sbjct: 375983 gatgg 375987
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 370426 tcaccttccacatcgagaaggcctccaaccccaactaccttgcactgctagtcaagtacg 370485
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 370486 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 370534
Score = 81.8 bits (41), Expect = 7e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 562 tcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaagtacg 621
|||||||||| | ||||||| | ||||||||||||||| || ||| | ||||||||||
Sbjct: 365763 tcaccttccacatcgagaaggcctccaaccccaactaccttgcgctgctagtcaagtacg 365822
Query: 622 ttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 365823 tcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 365871
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 168650 gtaccacttcgacctcagc-ggcacggcgttcggcgccatggccaag 168695
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgacct 448
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 370266 gacatgaacgacgagcccatcgctgcctaccacttcgacct 370306
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 556 ctaaggtcaccttccatttggagaagggatgcaaccccaactac 599
|||||||||||||||| | |||||||| | |||||||||||||
Sbjct: 376224 ctaaggtcaccttccacgttgagaagggctccaaccccaactac 376267
Score = 44.1 bits (22), Expect = 0.14
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 699 tggggcgccatctggaggaaggatagcgacaagccgatcaagggacccatcaccgtccga 758
||||| ||||||||||||| || | | ||||||| ||||||| ||| || |||||||
Sbjct: 370563 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 370622
Query: 759 ctcaccaccgaggg 772
|||||||||||||
Sbjct: 370623 gtcaccaccgaggg 370636
>gb|AU311940.1|AU311940 AU311940 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1011, mRNA sequence
Length = 436
Score = 79.8 bits (40), Expect = 3e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 587 caaccccaactacctggccctgttggtcaagtacgttgatggagatggtgacattgtggc 646
||||||||||||||| || ||| | ||||||||||| | ||| ||||||||| | ||||
Sbjct: 23 caaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtgga 82
Query: 647 ggtggacatcaaggagaagggctc 670
|||||| |||||||||||||||||
Sbjct: 83 ggtggaaatcaaggagaagggctc 106
>gb|AU182569.1|AU182569 AU182569 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4331, mRNA sequence
Length = 445
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgacctagcagg 454
||||| ||| || |||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct: 137 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 196
Query: 455 cacggcgttcggtgccatggc 475
|| ||||||||| ||||||||
Sbjct: 197 caaggcgttcggcgccatggc 217
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaag 617
|||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 306 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 365
Query: 618 t 618
|
Sbjct: 366 t 366
>dbj|AK070187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043G12, full
insert sequence
Length = 1121
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgacctagcagg 454
||||| ||| || |||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct: 409 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 468
Query: 455 cacggcgttcggtgccatggc 475
|| ||||||||| ||||||||
Sbjct: 469 caaggcgttcggcgccatggc 489
>dbj|AK099112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033P05, full
insert sequence
Length = 1071
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgacctagcagg 454
||||| ||| || |||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct: 409 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 468
Query: 455 cacggcgttcggtgccatggc 475
|| ||||||||| ||||||||
Sbjct: 469 caaggcgttcggcgccatggc 489
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaag 617
|||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 578 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 637
Query: 618 t 618
|
Sbjct: 638 t 638
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
sequence
Length = 158550
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgacctagcagg 454
||||| ||| || |||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct: 117490 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 117431
Query: 455 cacggcgttcggtgccatggc 475
|| ||||||||| ||||||||
Sbjct: 117430 caaggcgttcggcgccatggc 117410
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 558 aaggtcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaag 617
|||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 117321 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 117262
Query: 618 t 618
|
Sbjct: 117261 t 117261
>gb|AACV01022050.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022050, whole
genome shotgun sequence
Length = 7523
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgacctagcagg 454
||||| ||| || |||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct: 1400 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 1341
Query: 455 cacggcgttcggtgccatggc 475
|| ||||||||| ||||||||
Sbjct: 1340 caaggcgttcggcgccatggc 1320
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 558 aaggtcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaag 617
|||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 1231 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 1172
Query: 618 t 618
|
Sbjct: 1171 t 1171
>ref|NM_197637.1| Oryza sativa (japonica cultivar-group) beta-expansin
(OSJNBa0082M15.4), mRNA
Length = 1148
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgacctagcagg 454
||||| ||| || |||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct: 393 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 452
Query: 455 cacggcgttcggtgccatggc 475
|| ||||||||| ||||||||
Sbjct: 453 caaggcgttcggcgccatggc 473
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaag 617
|||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 562 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 621
Query: 618 t 618
|
Sbjct: 622 t 622
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgacctagcagg 454
||||| ||| || |||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct: 2869095 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 2869154
Query: 455 cacggcgttcggtgccatggc 475
|| ||||||||| ||||||||
Sbjct: 2869155 caaggcgttcggcgccatggc 2869175
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 3252016 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 3251971
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 3233939 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 3233894
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaag 617
|||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 2869264 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 2869323
Query: 618 t 618
|
Sbjct: 2869324 t 2869324
Score = 46.1 bits (23), Expect = 0.037
Identities = 40/43 (93%), Gaps = 2/43 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggc 475
||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct: 3239798 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggc 3239757
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgacctagcagg 454
||||| ||| || |||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct: 8898809 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 8898868
Query: 455 cacggcgttcggtgccatggc 475
|| ||||||||| ||||||||
Sbjct: 8898869 caaggcgttcggcgccatggc 8898889
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 9305175 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 9305130
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 9287098 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 9287053
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaag 617
|||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 8898978 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 8899037
Query: 618 t 618
|
Sbjct: 8899038 t 8899038
Score = 46.1 bits (23), Expect = 0.037
Identities = 40/43 (93%), Gaps = 2/43 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggc 475
||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct: 9292957 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggc 9292916
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgacctagcagg 454
||||| ||| || |||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct: 19764603 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 19764662
Query: 455 cacggcgttcggtgccatggc 475
|| ||||||||| ||||||||
Sbjct: 19764663 caaggcgttcggcgccatggc 19764683
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 20170969 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 20170924
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 20152892 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 20152847
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaag 617
|||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 19764772 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 19764831
Query: 618 t 618
|
Sbjct: 19764832 t 19764832
Score = 46.1 bits (23), Expect = 0.037
Identities = 40/43 (93%), Gaps = 2/43 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggc 475
||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct: 20158751 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggc 20158710
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgacctagcagg 454
||||| ||| || |||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct: 20946901 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 20946960
Query: 455 cacggcgttcggtgccatggc 475
|| ||||||||| ||||||||
Sbjct: 20946961 caaggcgttcggcgccatggc 20946981
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 21329822 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 21329777
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 21311745 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 21311700
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaag 617
|||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 20947070 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 20947129
Query: 618 t 618
|
Sbjct: 20947130 t 20947130
Score = 46.1 bits (23), Expect = 0.037
Identities = 40/43 (93%), Gaps = 2/43 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggc 475
||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct: 21317604 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggc 21317563
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgacctagcagg 454
||||| ||| || |||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct: 20958165 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccgg 20958224
Query: 455 cacggcgttcggtgccatggc 475
|| ||||||||| ||||||||
Sbjct: 20958225 caaggcgttcggcgccatggc 20958245
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 21341086 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 21341041
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 21323009 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 21322964
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccatttggagaagggatgcaaccccaactacctggccctgttggtcaag 617
|||||||||||||| | |||||||| | ||||||||||||||| ||| || | ||||||
Sbjct: 20958334 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 20958393
Query: 618 t 618
|
Sbjct: 20958394 t 20958394
Score = 46.1 bits (23), Expect = 0.037
Identities = 40/43 (93%), Gaps = 2/43 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggc 475
||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct: 21328868 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggc 21328827
>gb|C72628.1|C72628 C72628 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1957_1A, mRNA sequence
Length = 456
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgac 446
||||| ||| || |||||||||||||||||||| |||||||||||||||||
Sbjct: 314 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgac 365
>gb|C98558.1|C98558 C98558 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0407_5A, mRNA sequence
Length = 462
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgac 446
||||| ||| || |||||||||||||||||||| |||||||||||||||||
Sbjct: 395 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgac 446
>gb|AU063778.1|AU063778 AU063778 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0445_5A, mRNA sequence
Length = 475
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgac 446
||||| ||| || |||||||||||||||||||| |||||||||||||||||
Sbjct: 391 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgac 442
>gb|AU165487.1|AU165487 AU165487 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1554, mRNA sequence
Length = 492
Score = 63.9 bits (32), Expect = 2e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 395 ggtgtacattacagacatgaactacgagcccattgcggcgtaccacttcgac 446
||||| ||| || |||||||||||||||||||| |||||||||||||||||
Sbjct: 390 ggtgttcatcacggacatgaactacgagcccatctcggcgtaccacttcgac 441
>gb|C71918.1|C71918 C71918 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0610_1A, mRNA sequence
Length = 295
Score = 61.9 bits (31), Expect = 6e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgac 446
|||||||||||||||||||| |||||||||||||||||
Sbjct: 233 gacatgaactacgagcccatctcggcgtaccacttcgac 271
>ref|NM_187641.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 687
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 613 tcaagtacgttgatggagatggtgacattgtggcggtggacatcaaggagaagggctc 670
|||||||||| | ||| ||||||||| | |||| |||||| |||||||||||||||||
Sbjct: 443 tcaagtacgtcgctggtgatggtgacgtcgtggaggtggaaatcaaggagaagggctc 500
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 408 gacatgaactacgagcccattgcggcgtaccacttcgacct 448
||||||||| |||||||||| || || ||||||||||||||
Sbjct: 349 gacatgaacgacgagcccatcgctgcctaccacttcgacct 389
Score = 44.1 bits (22), Expect = 0.14
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 699 tggggcgccatctggaggaaggatagcgacaagccgatcaagggacccatcaccgtccga 758
||||| ||||||||||||| || | | ||||||| ||||||| ||| || |||||||
Sbjct: 529 tggggtgccatctggaggatagacacccccaagccgctcaagggccccttctccgtccgc 588
Query: 759 ctcaccaccgaggg 772
|||||||||||||
Sbjct: 589 gtcaccaccgaggg 602
>gb|AU030829.1|AU030829 AU030829 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60311_1A, mRNA sequence
Length = 378
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 114 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 159
>gb|CF276870.1|CF276870 14ETL--02-D03.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-D03, mRNA sequence
Length = 581
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 484 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 529
>gb|CF277133.1|CF277133 14ETL--02-I21.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-I21, mRNA sequence
Length = 602
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 508 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 553
>gb|CF293831.1|CF293831 30DGS--03-C11.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--03-C11, mRNA sequence
Length = 632
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 487 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 532
>gb|CF311056.1|CF311056 ABF--06-C03.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-C03, mRNA sequence
Length = 585
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 486 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 531
>gb|CF311548.1|CF311548 ABF--06-M21.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-M21, mRNA sequence
Length = 583
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 486 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 531
>gb|CF328550.1|CF328550 NACL--03-I06.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--03-I06, mRNA sequence
Length = 632
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 486 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 531
>gb|CF332237.1|CF332237 NACL--08-K17.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--08-K17, mRNA sequence
Length = 587
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 493 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 538
>gb|CF333825.1|CF333825 JMT--02-N24.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-N24, mRNA sequence
Length = 577
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 480 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 525
>gb|CD670675.1|CD670675 OsMR090 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 636
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 500 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 545
>gb|CV720797.1|CV720797 YBH--01-O04.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--01-O04, mRNA sequence
Length = 453
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 303 gtaccacttcgacctgagc-ggcacggcgttcggcgccatggccaag 348
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence
Length = 162241
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 94016 gtaccacttcgacctcagc-ggcacggcgttcggcgccatggccaag 93971
>dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G02, full
insert sequence
Length = 1027
Score = 54.0 bits (27), Expect = 2e-004
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 434 gtaccacttcgacct-agcaggcacggcgttcggtgccatggccaag 479
||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct: 386 gtaccacttcgacctcagc-ggcacggcgttcggcgccatggccaag 431
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,424,901
Number of Sequences: 438736
Number of extensions: 1424901
Number of successful extensions: 9225
Number of sequences better than 0.5: 89
Number of HSP's better than 0.5 without gapping: 84
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8558
Number of HSP's gapped (non-prelim): 595
length of query: 1003
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 982
effective length of database: 2,791,206,460
effective search space: 2740964743720
effective search space used: 2740964743720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)