BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276099.2.1
(545 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU172996.1|AU172996 AU172996 Rice cDNA from immature lea... 238 3e-060
gb|CB672835.1|CB672835 OSJNEe07B11.r OSJNEe Oryza sativa (j... 238 3e-060
gb|CB672837.1|CB672837 OSJNEe07B12.r OSJNEe Oryza sativa (j... 238 3e-060
dbj|AK069126.1| Oryza sativa (japonica cultivar-group) cDNA... 238 3e-060
gb|AACV01010627.1| Oryza sativa (japonica cultivar-group) c... 238 3e-060
ref|XM_474227.1| Oryza sativa (japonica cultivar-group), p... 238 3e-060
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 238 3e-060
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 238 3e-060
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 238 3e-060
emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromoso... 238 3e-060
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 238 3e-060
dbj|AK105717.1| Oryza sativa (japonica cultivar-group) cDNA... 230 6e-058
gb|DU711732.1|DU711732 RS485_TT144-2-4 CSIROPIFGRTT_DSTDNA_... 86 2e-014
dbj|AK070892.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbar... 48 0.005
gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbar... 48 0.005
gb|AACV01006093.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 48 0.005
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 48 0.005
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|AC104285.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|AACV01010742.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
ref|NT_079870.2| Oryza sativa (japonica cultivar-group) 42 0.31
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.31
>gb|AU172996.1|AU172996 AU172996 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60326, mRNA sequence
Length = 452
Score = 238 bits (120), Expect = 3e-060
Identities = 207/236 (87%)
Strand = Plus / Plus
Query: 27 attgatcggtcgcattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaa 86
|||||||| || ||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 138 attgatcgatctcattttcaggccttggttcatttttatggatgcaagcttcaggttcaa 197
Query: 87 gaaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccatg 146
|| || ||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 198 gagagaatgacaaggcagatagctgaagcagtttattctgtttcgcattgtggggccata 257
Query: 147 gtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggagc 206
|| ||||| || || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 258 gttgttgtagaagctaaccacatttgcatgatatcaaggggaatagagaaaatcaggagt 317
Query: 207 aacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaaggc 262
| ||| ||||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct: 318 agcactgcaacgattgcagttctgggtcagtttttgacggacccttctgccaaggc 373
>gb|CB672835.1|CB672835 OSJNEe07B11.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe07B11 3', mRNA sequence
Length = 894
Score = 238 bits (120), Expect = 3e-060
Identities = 207/236 (87%)
Strand = Plus / Minus
Query: 27 attgatcggtcgcattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaa 86
|||||||| || ||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 681 attgatcgatctcattttcaggccttggttcatttttatggatgcaagcttcaggttcaa 622
Query: 87 gaaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccatg 146
|| || ||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 621 gagagaatgacaaggcagatagctgaagcagtttattctgtttcgcattgtggggccata 562
Query: 147 gtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggagc 206
|| ||||| || || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 561 gttgttgtagaagctaaccacatttgcatgatatcaaggggaatagagaaaatcaggagt 502
Query: 207 aacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaaggc 262
| ||| ||||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct: 501 agcactgcaacgattgcagttctgggtcagtttttgacggacccttctgccaaggc 446
>gb|CB672837.1|CB672837 OSJNEe07B12.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe07B12 3', mRNA sequence
Length = 841
Score = 238 bits (120), Expect = 3e-060
Identities = 207/236 (87%)
Strand = Plus / Minus
Query: 27 attgatcggtcgcattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaa 86
|||||||| || ||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 681 attgatcgatctcattttcaggccttggttcatttttatggatgcaagcttcaggttcaa 622
Query: 87 gaaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccatg 146
|| || ||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 621 gagagaatgacaaggcagatagctgaagcagtttattctgtttcgcattgtggggccata 562
Query: 147 gtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggagc 206
|| ||||| || || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 561 gttgttgtagaagctaaccacatttgcatgatatcaaggggaatagagaaaatcaggagt 502
Query: 207 aacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaaggc 262
| ||| ||||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct: 501 agcactgcaacgattgcagttctgggtcagtttttgacggacccttctgccaaggc 446
>dbj|AK069126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007K22, full
insert sequence
Length = 2025
Score = 238 bits (120), Expect = 3e-060
Identities = 207/236 (87%)
Strand = Plus / Plus
Query: 27 attgatcggtcgcattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaa 86
|||||||| || ||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 1295 attgatcgatctcattttcaggccttggttcatttttatggatgcaagcttcaggttcaa 1354
Query: 87 gaaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccatg 146
|| || ||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 1355 gagagaatgacaaggcagatagctgaagcagtttattctgtttcgcattgtggggccata 1414
Query: 147 gtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggagc 206
|| ||||| || || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 1415 gttgttgtagaagctaaccacatttgcatgatatcaaggggaatagagaaaatcaggagt 1474
Query: 207 aacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaaggc 262
| ||| ||||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct: 1475 agcactgcaacgattgcagttctgggtcagtttttgacggacccttctgccaaggc 1530
>gb|AACV01010627.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010627, whole
genome shotgun sequence
Length = 26962
Score = 238 bits (120), Expect = 3e-060
Identities = 207/236 (87%)
Strand = Plus / Plus
Query: 27 attgatcggtcgcattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaa 86
|||||||| || ||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 22733 attgatcgatctcattttcaggccttggttcatttttatggatgcaagcttcaggttcaa 22792
Query: 87 gaaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccatg 146
|| || ||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 22793 gagagaatgacaaggcagatagctgaagcagtttattctgtttcgcattgtggggccata 22852
Query: 147 gtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggagc 206
|| ||||| || || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 22853 gttgttgtagaagctaaccacatttgcatgatatcaaggggaatagagaaaatcaggagt 22912
Query: 207 aacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaaggc 262
| ||| ||||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct: 22913 agcactgcaacgattgcagttctgggtcagtttttgacggacccttctgccaaggc 22968
>ref|XM_474227.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1356
Score = 238 bits (120), Expect = 3e-060
Identities = 207/236 (87%)
Strand = Plus / Plus
Query: 27 attgatcggtcgcattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaa 86
|||||||| || ||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 1075 attgatcgatctcattttcaggccttggttcatttttatggatgcaagcttcaggttcaa 1134
Query: 87 gaaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccatg 146
|| || ||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 1135 gagagaatgacaaggcagatagctgaagcagtttattctgtttcgcattgtggggccata 1194
Query: 147 gtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggagc 206
|| ||||| || || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 1195 gttgttgtagaagctaaccacatttgcatgatatcaaggggaatagagaaaatcaggagt 1254
Query: 207 aacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaaggc 262
| ||| ||||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct: 1255 agcactgcaacgattgcagttctgggtcagtttttgacggacccttctgccaaggc 1310
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 238 bits (120), Expect = 3e-060
Identities = 207/236 (87%)
Strand = Plus / Minus
Query: 27 attgatcggtcgcattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaa 86
|||||||| || ||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 1243816 attgatcgatctcattttcaggccttggttcatttttatggatgcaagcttcaggttcaa 1243757
Query: 87 gaaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccatg 146
|| || ||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 1243756 gagagaatgacaaggcagatagctgaagcagtttattctgtttcgcattgtggggccata 1243697
Query: 147 gtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggagc 206
|| ||||| || || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 1243696 gttgttgtagaagctaaccacatttgcatgatatcaaggggaatagagaaaatcaggagt 1243637
Query: 207 aacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaaggc 262
| ||| ||||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct: 1243636 agcactgcaacgattgcagttctgggtcagtttttgacggacccttctgccaaggc 1243581
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 238 bits (120), Expect = 3e-060
Identities = 207/236 (87%)
Strand = Plus / Minus
Query: 27 attgatcggtcgcattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaa 86
|||||||| || ||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 11439904 attgatcgatctcattttcaggccttggttcatttttatggatgcaagcttcaggttcaa 11439845
Query: 87 gaaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccatg 146
|| || ||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 11439844 gagagaatgacaaggcagatagctgaagcagtttattctgtttcgcattgtggggccata 11439785
Query: 147 gtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggagc 206
|| ||||| || || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 11439784 gttgttgtagaagctaaccacatttgcatgatatcaaggggaatagagaaaatcaggagt 11439725
Query: 207 aacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaaggc 262
| ||| ||||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct: 11439724 agcactgcaacgattgcagttctgggtcagtttttgacggacccttctgccaaggc 11439669
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 238 bits (120), Expect = 3e-060
Identities = 207/236 (87%)
Strand = Plus / Minus
Query: 27 attgatcggtcgcattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaa 86
|||||||| || ||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 30584003 attgatcgatctcattttcaggccttggttcatttttatggatgcaagcttcaggttcaa 30583944
Query: 87 gaaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccatg 146
|| || ||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 30583943 gagagaatgacaaggcagatagctgaagcagtttattctgtttcgcattgtggggccata 30583884
Query: 147 gtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggagc 206
|| ||||| || || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 30583883 gttgttgtagaagctaaccacatttgcatgatatcaaggggaatagagaaaatcaggagt 30583824
Query: 207 aacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaaggc 262
| ||| ||||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct: 30583823 agcactgcaacgattgcagttctgggtcagtttttgacggacccttctgccaaggc 30583768
>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01,
complete sequence
Length = 163448
Score = 238 bits (120), Expect = 3e-060
Identities = 207/236 (87%)
Strand = Plus / Minus
Query: 27 attgatcggtcgcattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaa 86
|||||||| || ||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 60587 attgatcgatctcattttcaggccttggttcatttttatggatgcaagcttcaggttcaa 60528
Query: 87 gaaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccatg 146
|| || ||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 60527 gagagaatgacaaggcagatagctgaagcagtttattctgtttcgcattgtggggccata 60468
Query: 147 gtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggagc 206
|| ||||| || || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 60467 gttgttgtagaagctaaccacatttgcatgatatcaaggggaatagagaaaatcaggagt 60408
Query: 207 aacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaaggc 262
| ||| ||||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct: 60407 agcactgcaacgattgcagttctgggtcagtttttgacggacccttctgccaaggc 60352
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 238 bits (120), Expect = 3e-060
Identities = 207/236 (87%)
Strand = Plus / Minus
Query: 27 attgatcggtcgcattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaa 86
|||||||| || ||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 33848688 attgatcgatctcattttcaggccttggttcatttttatggatgcaagcttcaggttcaa 33848629
Query: 87 gaaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccatg 146
|| || ||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 33848628 gagagaatgacaaggcagatagctgaagcagtttattctgtttcgcattgtggggccata 33848569
Query: 147 gtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggagc 206
|| ||||| || || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 33848568 gttgttgtagaagctaaccacatttgcatgatatcaaggggaatagagaaaatcaggagt 33848509
Query: 207 aacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaaggc 262
| ||| ||||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct: 33848508 agcactgcaacgattgcagttctgggtcagtttttgacggacccttctgccaaggc 33848453
>dbj|AK105717.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-F05, full
insert sequence
Length = 1478
Score = 230 bits (116), Expect = 6e-058
Identities = 206/236 (87%)
Strand = Plus / Plus
Query: 27 attgatcggtcgcattttcaggcgttggttcatttctacgggtgcaagcttcaggttcaa 86
|||||||| || ||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 804 attgatcgatctcattttcaggccttggttcatttttatggatgcaagcttcaggttcaa 863
Query: 87 gaaaggatgacaaggcagatagctgaagcggtttattcggtttcgcacaatggggccatg 146
|| || ||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 864 gagagaatgacaaggcagatagctgaagcagtttattctgtttcgcattgtggggccata 923
Query: 147 gtcgttgttgaggccaaccacatttgcatgatctcaagggggatagagaaaataaggagc 206
|| ||||| || || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 924 gttgttgtagaagctaaccacatttgcatgatatcaaggggaatagagaaaatcaggagt 983
Query: 207 aacacggcaacaattgcagttttgggccagtttttggccgacccttctgccaaggc 262
| ||| | ||| ||||||||| |||| ||||||||| | |||||||||||||||||
Sbjct: 984 agcactggaacgattgcagttctgggtcagtttttgacggacccttctgccaaggc 1039
>gb|DU711732.1|DU711732 RS485_TT144-2-4 CSIROPIFGRTT_DSTDNA_B2 Oryza sativa (japonica
cultivar-group) genomic clone RM3358 similar to Maps to
OSJN00127 (OSJNBa0084K01) chr04, DNA sequence
Length = 984
Score = 85.7 bits (43), Expect = 2e-014
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 164 ccacatttgcatgatctcaagggggatagagaaaataaggagcaacacggcaacaattgc 223
||||||||||||||| |||||||| ||||||||||| ||||| | ||| ||||| |||||
Sbjct: 944 ccacatttgcatgatatcaaggggaatagagaaaatcaggagtagcactgcaacgattgc 885
Query: 224 agttttgggccagtttttg 242
|||| |||| |||||||||
Sbjct: 884 agttctgggtcagtttttg 866
>dbj|AK070892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073N11, full
insert sequence
Length = 2791
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 agcttcaggttcaagaaaggatga 96
||||||||||||||||||||||||
Sbjct: 274 agcttcaggttcaagaaaggatga 297
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0021B21, from chromosome 3, complete sequence
Length = 166777
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 73 agcttcaggttcaagaaaggatga 96
||||||||||||||||||||||||
Sbjct: 52764 agcttcaggttcaagaaaggatga 52741
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAa0021B21, from chromosome 3, complete sequence
Length = 139208
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 agcttcaggttcaagaaaggatga 96
||||||||||||||||||||||||
Sbjct: 7237 agcttcaggttcaagaaaggatga 7260
>gb|AACV01006093.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006093, whole
genome shotgun sequence
Length = 46578
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 73 agcttcaggttcaagaaaggatga 96
||||||||||||||||||||||||
Sbjct: 26043 agcttcaggttcaagaaaggatga 26020
>ref|NT_107189.1| Oryza sativa (japonica cultivar-group)
Length = 1905944
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 agcttcaggttcaagaaaggatga 96
||||||||||||||||||||||||
Sbjct: 941953 agcttcaggttcaagaaaggatga 941976
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 agcttcaggttcaagaaaggatga 96
||||||||||||||||||||||||
Sbjct: 5810755 agcttcaggttcaagaaaggatga 5810778
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 agcttcaggttcaagaaaggatga 96
||||||||||||||||||||||||
Sbjct: 6003117 agcttcaggttcaagaaaggatga 6003140
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 agcttcaggttcaagaaaggatga 96
||||||||||||||||||||||||
Sbjct: 5777620 agcttcaggttcaagaaaggatga 5777643
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 agcttcaggttcaagaaaggatga 96
||||||||||||||||||||||||
Sbjct: 5778407 agcttcaggttcaagaaaggatga 5778430
>gb|AC104285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035J08,
complete sequence
Length = 117555
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 141 gccatggtcgttgttgaggcc 161
|||||||||||||||||||||
Sbjct: 101593 gccatggtcgttgttgaggcc 101613
>gb|AACV01010742.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010742, whole
genome shotgun sequence
Length = 14526
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 141 gccatggtcgttgttgaggcc 161
|||||||||||||||||||||
Sbjct: 12684 gccatggtcgttgttgaggcc 12704
>ref|NT_079870.2| Oryza sativa (japonica cultivar-group)
Length = 867822
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 141 gccatggtcgttgttgaggcc 161
|||||||||||||||||||||
Sbjct: 326073 gccatggtcgttgttgaggcc 326093
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028
genomic scaffold, whole genome shotgun sequence
Length = 7678539
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 141 gccatggtcgttgttgaggcc 161
|||||||||||||||||||||
Sbjct: 332420 gccatggtcgttgttgaggcc 332440
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 141 gccatggtcgttgttgaggcc 161
|||||||||||||||||||||
Sbjct: 332420 gccatggtcgttgttgaggcc 332440
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
complete sequence
Length = 29737217
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 141 gccatggtcgttgttgaggcc 161
|||||||||||||||||||||
Sbjct: 326073 gccatggtcgttgttgaggcc 326093
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 859,894
Number of Sequences: 438736
Number of extensions: 859894
Number of successful extensions: 20790
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20359
Number of HSP's gapped (non-prelim): 431
length of query: 545
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 524
effective length of database: 2,791,206,460
effective search space: 1462592185040
effective search space used: 1462592185040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)