BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3230315.2.1
(457 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK105998.1| Oryza sativa (japonica cultivar-group) cDNA... 301 2e-079
dbj|AP003722.3| Oryza sativa (japonica cultivar-group) geno... 301 2e-079
gb|AACV01000869.1| Oryza sativa (japonica cultivar-group) c... 301 2e-079
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 301 2e-079
ref|NM_183704.1| Oryza sativa (japonica cultivar-group), p... 301 2e-079
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 301 2e-079
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 301 2e-079
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 301 2e-079
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 301 2e-079
gb|CG408589.1|CG408589 Ds281 Ds insertion lines Oryza sativ... 236 8e-060
dbj|AK101251.1| Oryza sativa (japonica cultivar-group) cDNA... 111 3e-022
dbj|AP004343.2| Oryza sativa (japonica cultivar-group) geno... 111 3e-022
dbj|AP006268.4| Oryza sativa (japonica cultivar-group) geno... 111 3e-022
gb|AACV01017005.1| Oryza sativa (japonica cultivar-group) c... 111 3e-022
ref|XM_479497.1| Oryza sativa (japonica cultivar-group), mRNA 111 3e-022
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 111 3e-022
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 111 3e-022
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 111 3e-022
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 111 3e-022
gb|AU076010.1|AU076010 AU076010 Rice callus Oryza sativa (j... 105 2e-020
dbj|AK058651.1| Oryza sativa (japonica cultivar-group) cDNA... 105 2e-020
dbj|AP003798.3| Oryza sativa (japonica cultivar-group) geno... 105 2e-020
gb|AACV01018605.1| Oryza sativa (japonica cultivar-group) c... 105 2e-020
ref|XM_482697.1| Oryza sativa (japonica cultivar-group), mRNA 105 2e-020
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 105 2e-020
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 105 2e-020
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 105 2e-020
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 105 2e-020
gb|CB651164.1|CB651164 OSJNEb16A10.r OSJNEb Oryza sativa (j... 94 8e-017
dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA... 94 8e-017
dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA... 94 8e-017
dbj|AP003345.3| Oryza sativa (japonica cultivar-group) geno... 94 8e-017
gb|AACV01002476.1| Oryza sativa (japonica cultivar-group) c... 94 8e-017
ref|NM_190847.1| Oryza sativa (japonica cultivar-group), p... 94 8e-017
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 94 8e-017
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 94 8e-017
gb|CB675160.1|CB675160 OSJNEe10L01.r OSJNEe Oryza sativa (j... 86 2e-014
dbj|AK107019.1| Oryza sativa (japonica cultivar-group) cDNA... 70 1e-009
dbj|AP004168.3| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
gb|AACV01003929.1| Oryza sativa (japonica cultivar-group) c... 70 1e-009
ref|XM_465003.1| Oryza sativa (japonica cultivar-group), mRNA 70 1e-009
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 70 1e-009
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chro... 60 1e-006
dbj|AK101962.1| Oryza sativa (japonica cultivar-group) cDNA... 60 1e-006
dbj|AK105682.1| Oryza sativa (japonica cultivar-group) cDNA... 60 1e-006
gb|AACV01002791.1| Oryza sativa (japonica cultivar-group) c... 60 1e-006
gb|AACV01002792.1| Oryza sativa (japonica cultivar-group) c... 60 1e-006
ref|NM_190160.1| Oryza sativa (japonica cultivar-group), p... 60 1e-006
dbj|AP003227.3| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
dbj|AK072369.1| Oryza sativa (japonica cultivar-group) cDNA... 58 4e-006
dbj|AP005551.3| Oryza sativa (japonica cultivar-group) geno... 58 4e-006
gb|AACV01020049.1| Oryza sativa (japonica cultivar-group) c... 58 4e-006
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 58 4e-006
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 58 4e-006
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 58 4e-006
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 58 4e-006
dbj|AK100947.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
dbj|AK121454.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
gb|AC134348.2| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|AC135929.2| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|AACV01009904.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
gb|AACV01011953.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|XM_472740.1| Oryza sativa (japonica cultivar-group), p... 56 2e-005
ref|XM_475113.1| Oryza sativa (japonica cultivar-group), p... 56 2e-005
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 56 2e-005
ref|NT_107210.1| Oryza sativa (japonica cultivar-group) 56 2e-005
gb|CH401205.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromoso... 56 2e-005
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
dbj|AK071728.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
gb|AACV01017055.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
ref|XM_479611.1| Oryza sativa (japonica cultivar-group), mRNA 52 3e-004
dbj|AP004316.4| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
gb|AZ134216.1|AZ134216 OSJNBb0110C23r CUGI Rice BAC Library... 48 0.004
gb|AACV01000523.1| Oryza sativa (japonica cultivar-group) c... 48 0.004
ref|NM_188648.1| Oryza sativa (japonica cultivar-group), Oz... 48 0.004
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 48 0.004
dbj|AP002481.1| Oryza sativa (japonica cultivar-group) geno... 48 0.004
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|AZ128741.1|AZ128741 OSJNBb0099L14r CUGI Rice BAC Library... 46 0.016
dbj|AK100257.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.016
gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) c... 46 0.016
ref|XM_474065.1| Oryza sativa (japonica cultivar-group), p... 46 0.016
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 46 0.016
emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromoso... 46 0.016
emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromoso... 46 0.016
gb|AACV01027651.1| Oryza sativa (japonica cultivar-group) C... 44 0.064
gb|AACV01029294.1| Oryza sativa (japonica cultivar-group) C... 44 0.064
gb|AACV01029891.1| Oryza sativa (japonica cultivar-group) C... 44 0.064
gb|CH402111.1| Oryza sativa (japonica cultivar-group) scaff... 44 0.064
gb|D45946.1|D45946 RICS10237A Rice green shoot Oryza sativa... 42 0.25
gb|D47070.1|D47070 RICS12176A Rice green shoot Oryza sativa... 42 0.25
gb|C93594.1|C93594 C93594 Rice panicle at flowering stage O... 42 0.25
gb|AU182402.1|AU182402 AU182402 Rice panicle at flowering s... 42 0.25
gb|AU183134.1|AU183134 AU183134 Rice panicle (between 3cm t... 42 0.25
gb|CB641934.1|CB641934 OSJNEb01N13.f OSJNEb Oryza sativa (j... 42 0.25
gb|CB641971.1|CB641971 OSJNEb01O12.f OSJNEb Oryza sativa (j... 42 0.25
gb|CB641973.1|CB641973 OSJNEb01O13.f OSJNEb Oryza sativa (j... 42 0.25
gb|CB644220.1|CB644220 OSJNEb05F07.f OSJNEb Oryza sativa (j... 42 0.25
gb|CB647788.1|CB647788 OSJNEb10N24.f OSJNEb Oryza sativa (j... 42 0.25
gb|CB648415.1|CB648415 OSJNEb11M16.f OSJNEb Oryza sativa (j... 42 0.25
gb|CB650349.1|CB650349 OSJNEb14L24.f OSJNEb Oryza sativa (j... 42 0.25
gb|CB653464.1|CB653464 OSJNEc04I07.f OSJNEc Oryza sativa (j... 42 0.25
gb|CB654867.1|CB654867 OSJNEc07L11.f OSJNEc Oryza sativa (j... 42 0.25
gb|CB657543.1|CB657543 OSJNEc12P15.f OSJNEc Oryza sativa (j... 42 0.25
gb|CB658066.1|CB658066 OSJNEc13N10.f OSJNEc Oryza sativa (j... 42 0.25
gb|CB658353.1|CB658353 OSJNEc14F10.f OSJNEc Oryza sativa (j... 42 0.25
gb|CB661261.1|CB661261 OSJNEd03O01.f OSJNEd Oryza sativa (j... 42 0.25
gb|CB661269.1|CB661269 OSJNEd03O08.f OSJNEd Oryza sativa (j... 42 0.25
gb|CB664352.1|CB664352 OSJNEd10A09.f OSJNEd Oryza sativa (j... 42 0.25
gb|CB664354.1|CB664354 OSJNEd10A10.f OSJNEd Oryza sativa (j... 42 0.25
gb|CB665031.1|CB665031 OSJNEd11B24.f OSJNEd Oryza sativa (j... 42 0.25
gb|CB679284.1|CB679284 OSJNEf02J22.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB679423.1|CB679423 OSJNEf02O13.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB680860.1|CB680860 OSJNEf06F12.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB681717.1|CB681717 OSJNEf08F08.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB681791.1|CB681791 OSJNEf08H12.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB682330.1|CB682330 OSJNEf09I18.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB682357.1|CB682357 OSJNEf09J11.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB682469.1|CB682469 OSJNEf09N06.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB682892.1|CB682892 OSJNEf10K16.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB682953.1|CB682953 OSJNEf10M14.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB683119.1|CB683119 OSJNEf11B17.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB683215.1|CB683215 OSJNEf11E24.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB684156.1|CB684156 OSJNEf13G11.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB684260.1|CB684260 OSJNEf13J14.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB684296.1|CB684296 OSJNEf13K14.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB684878.1|CB684878 OSJNEf14N08.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB685801.1|CB685801 OSJNEf16I16.f OSJNEf Oryza sativa (j... 42 0.25
gb|CB685950.1|CB685950 OSJNEf16N03.f OSJNEf Oryza sativa (j... 42 0.25
gb|CF196216.1|CF196216 Azvi1.4_E09 AZ-VI Oryza sativa (japo... 42 0.25
gb|D87279.1|D87279 D87279 3 hr light cDNA library Oryza sat... 42 0.25
gb|CV722295.1|CV722295 YDARK--01-C08.b1 Etiolated rice leaf... 42 0.25
gb|AU165323.2|AU165323 AU165323 Rice panicle at flowering s... 42 0.25
gb|AF058796.1|AF058796 Oryza sativa chlorophyll a/b-binding... 42 0.25
gb|AC087839.9| Oryza sativa (japonica cultivar-group) chrom... 42 0.25
dbj|AK058293.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.25
dbj|AK098992.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.25
dbj|AK103924.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.25
dbj|AK104309.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.25
dbj|AK104619.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.25
dbj|AK119534.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.25
gb|AACV01016563.1| Oryza sativa (japonica cultivar-group) c... 42 0.25
ref|XM_478692.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.25
ref|XM_506405.2| PREDICTED Oryza sativa (japonica cultivar-... 42 0.25
ref|XM_507366.1| PREDICTED Oryza sativa (japonica cultivar-... 42 0.25
ref|XM_507367.1| PREDICTED Oryza sativa (japonica cultivar-... 42 0.25
ref|XM_507368.1| PREDICTED Oryza sativa (japonica cultivar-... 42 0.25
dbj|AP005195.3| Oryza sativa (japonica cultivar-group) geno... 42 0.25
>dbj|AK105998.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H08, full
insert sequence
Length = 1488
Score = 301 bits (152), Expect = 2e-079
Identities = 257/292 (88%)
Strand = Plus / Minus
Query: 158 ggtgaaggggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggt 217
||||||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 1275 ggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatgaagttgccgacggt 1216
Query: 218 gaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgccc 277
||||| ||| ||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 1215 gaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttccacttgacccggtt 1156
Query: 278 ggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgc 337
||||||| ||| ||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct: 1155 ggacgtggaggccccggggccggtgttctggtactcgccgtagtagagcgtgtcgagcgc 1096
Query: 338 gaagctgccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgactg 397
|||| ||||| ||||||||||||| ||||| |||| ||| | ||| |||||||||||
Sbjct: 1095 gaagttgccgctccactcgagccacccggcggggttgacgacgctgtcgagctccgactg 1036
Query: 398 caggtacaccgtgcgggagtactgcttccatgggcggcccaggtaggtcttg 449
|| | ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1035 catgaacaccgtgcgggagtactgcttccaggggcggccgaggtaggtcttg 984
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1011A07
Length = 150590
Score = 301 bits (152), Expect = 2e-079
Identities = 257/292 (88%)
Strand = Plus / Minus
Query: 158 ggtgaaggggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggt 217
||||||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 72519 ggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatgaagttgccgacggt 72460
Query: 218 gaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgccc 277
||||| ||| ||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 72459 gaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttccacttgacccggtt 72400
Query: 278 ggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgc 337
||||||| ||| ||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct: 72399 ggacgtggaggccccggggccggtgttctggtactcgccgtagtagagcgtgtcgagcgc 72340
Query: 338 gaagctgccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgactg 397
|||| ||||| ||||||||||||| ||||| |||| ||| | ||| |||||||||||
Sbjct: 72339 gaagttgccgctccactcgagccacccggcggggttgacgacgctgtcgagctccgactg 72280
Query: 398 caggtacaccgtgcgggagtactgcttccatgggcggcccaggtaggtcttg 449
|| | ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 72279 catgaacaccgtgcgggagtactgcttccaggggcggccgaggtaggtcttg 72228
>gb|AACV01000869.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000869, whole
genome shotgun sequence
Length = 17382
Score = 301 bits (152), Expect = 2e-079
Identities = 257/292 (88%)
Strand = Plus / Plus
Query: 158 ggtgaaggggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggt 217
||||||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 11674 ggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatgaagttgccgacggt 11733
Query: 218 gaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgccc 277
||||| ||| ||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 11734 gaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttccacttgacccggtt 11793
Query: 278 ggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgc 337
||||||| ||| ||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct: 11794 ggacgtggaggccccggggccggtgttctggtactcgccgtagtagagcgtgtcgagcgc 11853
Query: 338 gaagctgccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgactg 397
|||| ||||| ||||||||||||| ||||| |||| ||| | ||| |||||||||||
Sbjct: 11854 gaagttgccgctccactcgagccacccggcggggttgacgacgctgtcgagctccgactg 11913
Query: 398 caggtacaccgtgcgggagtactgcttccatgggcggcccaggtaggtcttg 449
|| | ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 11914 catgaacaccgtgcgggagtactgcttccaggggcggccgaggtaggtcttg 11965
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 301 bits (152), Expect = 2e-079
Identities = 257/292 (88%)
Strand = Plus / Minus
Query: 158 ggtgaaggggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggt 217
||||||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 11731133 ggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatgaagttgccgacggt 11731074
Query: 218 gaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgccc 277
||||| ||| ||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 11731073 gaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttccacttgacccggtt 11731014
Query: 278 ggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgc 337
||||||| ||| ||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct: 11731013 ggacgtggaggccccggggccggtgttctggtactcgccgtagtagagcgtgtcgagcgc 11730954
Query: 338 gaagctgccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgactg 397
|||| ||||| ||||||||||||| ||||| |||| ||| | ||| |||||||||||
Sbjct: 11730953 gaagttgccgctccactcgagccacccggcggggttgacgacgctgtcgagctccgactg 11730894
Query: 398 caggtacaccgtgcgggagtactgcttccatgggcggcccaggtaggtcttg 449
|| | ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 11730893 catgaacaccgtgcgggagtactgcttccaggggcggccgaggtaggtcttg 11730842
Score = 93.7 bits (47), Expect = 8e-017
Identities = 163/201 (81%), Gaps = 3/201 (1%)
Strand = Plus / Minus
Query: 243 gtgatgacgcggtaccccttccacttgacccgcccggacgtgccggcgccgggccccgtg 302
||||||||| ||||||| ||| ||||| || |||| ||||| ||||||||| ||| |
Sbjct: 33533749 gtgatgacgtggtacccgggccagttgacgcggccggccgtgctggcgccggggccctgg 33533690
Query: 303 ttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg---ccgttccactcgagc 359
||| ||||||||||||| ||||||| | |||||||||| | |||||||||||||||
Sbjct: 33533689 ttctggtactcgccgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagc 33533630
Query: 360 cagccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtac 419
|| || ||||||||| |||||||||| | ||| ||| ||||||||| || ||||||
Sbjct: 33533629 caacccctcgggtcgacgtgcgagtccaggtaggacagcatgtacaccgtccgcgagtac 33533570
Query: 420 tgcttccatgggcggcccagg 440
| |||||| || |||||||||
Sbjct: 33533569 tccttccacggccggcccagg 33533549
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct: 38281178 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccac 38281223
Score = 54.0 bits (27), Expect = 7e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 401 gtacaccgtgcgggagtactgcttccatgggcggcccaggtag 443
|||||||||||| ||||||| |||||| || ||||||||||||
Sbjct: 38281271 gtacaccgtgcgcgagtactccttccagggccggcccaggtag 38281313
Score = 48.1 bits (24), Expect = 0.004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 308 gtactcgccgtagtagagcgtgtc 331
||||||||||||||||||||||||
Sbjct: 7427949 gtactcgccgtagtagagcgtgtc 7427926
>ref|NM_183704.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 888
Score = 301 bits (152), Expect = 2e-079
Identities = 257/292 (88%)
Strand = Plus / Minus
Query: 158 ggtgaaggggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggt 217
||||||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 876 ggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatgaagttgccgacggt 817
Query: 218 gaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgccc 277
||||| ||| ||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 816 gaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttccacttgacccggtt 757
Query: 278 ggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgc 337
||||||| ||| ||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct: 756 ggacgtggaggccccggggccggtgttctggtactcgccgtagtagagcgtgtcgagcgc 697
Query: 338 gaagctgccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgactg 397
|||| ||||| ||||||||||||| ||||| |||| ||| | ||| |||||||||||
Sbjct: 696 gaagttgccgctccactcgagccacccggcggggttgacgacgctgtcgagctccgactg 637
Query: 398 caggtacaccgtgcgggagtactgcttccatgggcggcccaggtaggtcttg 449
|| | ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 636 catgaacaccgtgcgggagtactgcttccaggggcggccgaggtaggtcttg 585
>ref|NT_079961.2| Oryza sativa (japonica cultivar-group)
Length = 3480660
Score = 301 bits (152), Expect = 2e-079
Identities = 257/292 (88%)
Strand = Plus / Minus
Query: 158 ggtgaaggggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggt 217
||||||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 240358 ggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatgaagttgccgacggt 240299
Query: 218 gaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgccc 277
||||| ||| ||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 240298 gaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttccacttgacccggtt 240239
Query: 278 ggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgc 337
||||||| ||| ||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct: 240238 ggacgtggaggccccggggccggtgttctggtactcgccgtagtagagcgtgtcgagcgc 240179
Query: 338 gaagctgccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgactg 397
|||| ||||| ||||||||||||| ||||| |||| ||| | ||| |||||||||||
Sbjct: 240178 gaagttgccgctccactcgagccacccggcggggttgacgacgctgtcgagctccgactg 240119
Query: 398 caggtacaccgtgcgggagtactgcttccatgggcggcccaggtaggtcttg 449
|| | ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 240118 catgaacaccgtgcgggagtactgcttccaggggcggccgaggtaggtcttg 240067
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002
genomic scaffold, whole genome shotgun sequence
Length = 5008528
Score = 301 bits (152), Expect = 2e-079
Identities = 257/292 (88%)
Strand = Plus / Minus
Query: 158 ggtgaaggggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggt 217
||||||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 186633 ggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatgaagttgccgacggt 186574
Query: 218 gaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgccc 277
||||| ||| ||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 186573 gaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttccacttgacccggtt 186514
Query: 278 ggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgc 337
||||||| ||| ||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct: 186513 ggacgtggaggccccggggccggtgttctggtactcgccgtagtagagcgtgtcgagcgc 186454
Query: 338 gaagctgccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgactg 397
|||| ||||| ||||||||||||| ||||| |||| ||| | ||| |||||||||||
Sbjct: 186453 gaagttgccgctccactcgagccacccggcggggttgacgacgctgtcgagctccgactg 186394
Query: 398 caggtacaccgtgcgggagtactgcttccatgggcggcccaggtaggtcttg 449
|| | ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 186393 catgaacaccgtgcgggagtactgcttccaggggcggccgaggtaggtcttg 186342
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 301 bits (152), Expect = 2e-079
Identities = 257/292 (88%)
Strand = Plus / Minus
Query: 158 ggtgaaggggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggt 217
||||||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 11803128 ggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatgaagttgccgacggt 11803069
Query: 218 gaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgccc 277
||||| ||| ||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 11803068 gaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttccacttgacccggtt 11803009
Query: 278 ggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgc 337
||||||| ||| ||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct: 11803008 ggacgtggaggccccggggccggtgttctggtactcgccgtagtagagcgtgtcgagcgc 11802949
Query: 338 gaagctgccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgactg 397
|||| ||||| ||||||||||||| ||||| |||| ||| | ||| |||||||||||
Sbjct: 11802948 gaagttgccgctccactcgagccacccggcggggttgacgacgctgtcgagctccgactg 11802889
Query: 398 caggtacaccgtgcgggagtactgcttccatgggcggcccaggtaggtcttg 449
|| | ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 11802888 catgaacaccgtgcgggagtactgcttccaggggcggccgaggtaggtcttg 11802837
Score = 93.7 bits (47), Expect = 8e-017
Identities = 163/201 (81%), Gaps = 3/201 (1%)
Strand = Plus / Minus
Query: 243 gtgatgacgcggtaccccttccacttgacccgcccggacgtgccggcgccgggccccgtg 302
||||||||| ||||||| ||| ||||| || |||| ||||| ||||||||| ||| |
Sbjct: 33115518 gtgatgacgtggtacccgggccagttgacgcggccggccgtgctggcgccggggccctgg 33115459
Query: 303 ttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg---ccgttccactcgagc 359
||| ||||||||||||| ||||||| | |||||||||| | |||||||||||||||
Sbjct: 33115458 ttctggtactcgccgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagc 33115399
Query: 360 cagccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtac 419
|| || ||||||||| |||||||||| | ||| ||| ||||||||| || ||||||
Sbjct: 33115398 caacccctcgggtcgacgtgcgagtccaggtaggacagcatgtacaccgtccgcgagtac 33115339
Query: 420 tgcttccatgggcggcccagg 440
| |||||| || |||||||||
Sbjct: 33115338 tccttccacggccggcccagg 33115318
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct: 37665837 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccac 37665882
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct: 37664377 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccac 37664422
Score = 54.0 bits (27), Expect = 7e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 401 gtacaccgtgcgggagtactgcttccatgggcggcccaggtag 443
|||||||||||| ||||||| |||||| || ||||||||||||
Sbjct: 37665930 gtacaccgtgcgcgagtactccttccagggccggcccaggtag 37665972
Score = 54.0 bits (27), Expect = 7e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 401 gtacaccgtgcgggagtactgcttccatgggcggcccaggtag 443
|||||||||||| ||||||| |||||| || ||||||||||||
Sbjct: 37664470 gtacaccgtgcgcgagtactccttccagggccggcccaggtag 37664512
Score = 48.1 bits (24), Expect = 0.004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 308 gtactcgccgtagtagagcgtgtc 331
||||||||||||||||||||||||
Sbjct: 7506688 gtactcgccgtagtagagcgtgtc 7506665
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 301 bits (152), Expect = 2e-079
Identities = 257/292 (88%)
Strand = Plus / Minus
Query: 158 ggtgaaggggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggt 217
||||||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 11733351 ggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatgaagttgccgacggt 11733292
Query: 218 gaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgccc 277
||||| ||| ||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 11733291 gaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttccacttgacccggtt 11733232
Query: 278 ggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgc 337
||||||| ||| ||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct: 11733231 ggacgtggaggccccggggccggtgttctggtactcgccgtagtagagcgtgtcgagcgc 11733172
Query: 338 gaagctgccgttccactcgagccagccggccgggtcgaccagcgagtccagctccgactg 397
|||| ||||| ||||||||||||| ||||| |||| ||| | ||| |||||||||||
Sbjct: 11733171 gaagttgccgctccactcgagccacccggcggggttgacgacgctgtcgagctccgactg 11733112
Query: 398 caggtacaccgtgcgggagtactgcttccatgggcggcccaggtaggtcttg 449
|| | ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 11733111 catgaacaccgtgcgggagtactgcttccaggggcggccgaggtaggtcttg 11733060
Score = 93.7 bits (47), Expect = 8e-017
Identities = 163/201 (81%), Gaps = 3/201 (1%)
Strand = Plus / Minus
Query: 243 gtgatgacgcggtaccccttccacttgacccgcccggacgtgccggcgccgggccccgtg 302
||||||||| ||||||| ||| ||||| || |||| ||||| ||||||||| ||| |
Sbjct: 33453079 gtgatgacgtggtacccgggccagttgacgcggccggccgtgctggcgccggggccctgg 33453020
Query: 303 ttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg---ccgttccactcgagc 359
||| ||||||||||||| ||||||| | |||||||||| | |||||||||||||||
Sbjct: 33453019 ttctggtactcgccgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagc 33452960
Query: 360 cagccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtac 419
|| || ||||||||| |||||||||| | ||| ||| ||||||||| || ||||||
Sbjct: 33452959 caacccctcgggtcgacgtgcgagtccaggtaggacagcatgtacaccgtccgcgagtac 33452900
Query: 420 tgcttccatgggcggcccagg 440
| |||||| || |||||||||
Sbjct: 33452899 tccttccacggccggcccagg 33452879
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct: 38200508 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccac 38200553
Score = 54.0 bits (27), Expect = 7e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 401 gtacaccgtgcgggagtactgcttccatgggcggcccaggtag 443
|||||||||||| ||||||| |||||| || ||||||||||||
Sbjct: 38200601 gtacaccgtgcgcgagtactccttccagggccggcccaggtag 38200643
Score = 48.1 bits (24), Expect = 0.004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 308 gtactcgccgtagtagagcgtgtc 331
||||||||||||||||||||||||
Sbjct: 7430167 gtactcgccgtagtagagcgtgtc 7430144
>gb|CG408589.1|CG408589 Ds281 Ds insertion lines Oryza sativa (japonica cultivar-group)
genomic, DNA sequence
Length = 441
Score = 236 bits (119), Expect = 8e-060
Identities = 191/215 (88%)
Strand = Plus / Plus
Query: 158 ggtgaaggggatggacgtgccggcgagccagaggtcgccgtcgatgaagttgccaacggt 217
||||||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 205 ggtgaaggggacggacgtgccggcgagccatacgtcgccgtcgatgaagttgccgacggt 264
Query: 218 gaaggcgctggcctcggcggcgctggtgatgacgcggtaccccttccacttgacccgccc 277
||||| ||| ||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 265 gaaggtgctcgcctccgacgcgctggtgatgacgcggtagcccttccacttgacccggtt 324
Query: 278 ggacgtgccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgc 337
||||||| ||| ||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct: 325 ggacgtggaggccccggggccggtgttctggtactcgccgtagtagagcgtgtcgagcgc 384
Query: 338 gaagctgccgttccactcgagccagccggccgggt 372
|||| ||||| ||||||||||||| ||||| ||||
Sbjct: 385 gaagttgccgctccactcgagccacccggcggggt 419
>dbj|AK101251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032F02, full
insert sequence
Length = 2035
Score = 111 bits (56), Expect = 3e-022
Identities = 59/60 (98%)
Strand = Plus / Minus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 gttcatgtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 1593
>dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0618H09
Length = 142306
Score = 111 bits (56), Expect = 3e-022
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63432 gttcatgtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 63491
>dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0037D09
Length = 140470
Score = 111 bits (56), Expect = 3e-022
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71643 gttcatgtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 71702
>gb|AACV01017005.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017005, whole
genome shotgun sequence
Length = 30108
Score = 111 bits (56), Expect = 3e-022
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14690 gttcatgtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 14749
>ref|XM_479497.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2035
Score = 111 bits (56), Expect = 3e-022
Identities = 59/60 (98%)
Strand = Plus / Minus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 gttcatgtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 1593
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 111 bits (56), Expect = 3e-022
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16118896 gttcatgtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 16118955
Score = 52.0 bits (26), Expect = 3e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 316 cgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
|||||||||| ||||| || |||||| ||||||||||||| |||||
Sbjct: 16949167 cgtagtagagggtgtccagggcgaagttgccgttccactccagcca 16949122
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 376 ccagcgagtccagctccgactgcaggtac 404
|||||||||||||||| |||||||||||
Sbjct: 9877013 ccagcgagtccagctcgaactgcaggtac 9877041
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 111 bits (56), Expect = 3e-022
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14080877 gttcatgtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 14080936
Score = 52.0 bits (26), Expect = 3e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 316 cgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
|||||||||| ||||| || |||||| ||||||||||||| |||||
Sbjct: 14934728 cgtagtagagggtgtccagggcgaagttgccgttccactccagcca 14934683
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 376 ccagcgagtccagctccgactgcaggtac 404
|||||||||||||||| |||||||||||
Sbjct: 7693703 ccagcgagtccagctcgaactgcaggtac 7693731
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 111 bits (56), Expect = 3e-022
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27480316 gttcatgtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 27480375
Score = 52.0 bits (26), Expect = 3e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 316 cgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
|||||||||| ||||| || |||||| ||||||||||||| |||||
Sbjct: 28334167 cgtagtagagggtgtccagggcgaagttgccgttccactccagcca 28334122
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 376 ccagcgagtccagctccgactgcaggtac 404
|||||||||||||||| |||||||||||
Sbjct: 21093142 ccagcgagtccagctcgaactgcaggtac 21093170
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 111 bits (56), Expect = 3e-022
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28505891 gttcatgtactcggcgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 28505950
Score = 52.0 bits (26), Expect = 3e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 316 cgtagtagagcgtgtcgagcgcgaagctgccgttccactcgagcca 361
|||||||||| ||||| || |||||| ||||||||||||| |||||
Sbjct: 29336162 cgtagtagagggtgtccagggcgaagttgccgttccactccagcca 29336117
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 376 ccagcgagtccagctccgactgcaggtac 404
|||||||||||||||| |||||||||||
Sbjct: 22264008 ccagcgagtccagctcgaactgcaggtac 22264036
>gb|AU076010.1|AU076010 AU076010 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52004_12Z, mRNA sequence
Length = 620
Score = 105 bits (53), Expect = 2e-020
Identities = 56/57 (98%)
Strand = Plus / Minus
Query: 284 gccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gccggcgccgggcccggtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 275
>dbj|AK058651.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F02, full
insert sequence
Length = 1923
Score = 105 bits (53), Expect = 2e-020
Identities = 56/57 (98%)
Strand = Plus / Minus
Query: 284 gccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 gccggcgccgggcccggtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 1535
>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1005_H01
Length = 128124
Score = 105 bits (53), Expect = 2e-020
Identities = 56/57 (98%)
Strand = Plus / Minus
Query: 284 gccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 59732 gccggcgccgggcccggtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 59676
>gb|AACV01018605.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018605, whole
genome shotgun sequence
Length = 17328
Score = 105 bits (53), Expect = 2e-020
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 284 gccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 16610 gccggcgccgggcccggtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 16666
>ref|XM_482697.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1923
Score = 105 bits (53), Expect = 2e-020
Identities = 56/57 (98%)
Strand = Plus / Minus
Query: 284 gccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 gccggcgccgggcccggtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 1535
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 105 bits (53), Expect = 2e-020
Identities = 56/57 (98%)
Strand = Plus / Minus
Query: 284 gccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 21735896 gccggcgccgggcccggtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 21735840
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 105 bits (53), Expect = 2e-020
Identities = 56/57 (98%)
Strand = Plus / Minus
Query: 284 gccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 13248215 gccggcgccgggcccggtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 13248159
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 105 bits (53), Expect = 2e-020
Identities = 56/57 (98%)
Strand = Plus / Minus
Query: 284 gccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 20850221 gccggcgccgggcccggtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 20850165
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 105 bits (53), Expect = 2e-020
Identities = 56/57 (98%)
Strand = Plus / Minus
Query: 284 gccggcgccgggccccgtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 21973983 gccggcgccgggcccggtgttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 21973927
>gb|CB651164.1|CB651164 OSJNEb16A10.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16A10 3', mRNA sequence
Length = 792
Score = 93.7 bits (47), Expect = 8e-017
Identities = 163/201 (81%), Gaps = 3/201 (1%)
Strand = Plus / Plus
Query: 243 gtgatgacgcggtaccccttccacttgacccgcccggacgtgccggcgccgggccccgtg 302
||||||||| ||||||| ||| ||||| || |||| ||||| ||||||||| ||| |
Sbjct: 255 gtgatgacgtggtacccgggccagttgacgcggccggccgtgctggcgccggggccctgg 314
Query: 303 ttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg---ccgttccactcgagc 359
||| ||||||||||||| ||||||| | |||||||||| | |||||||||||||||
Sbjct: 315 ttctggtactcgccgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagc 374
Query: 360 cagccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtac 419
|| || ||||||||| |||||||||| | ||| ||| ||||||||| || ||||||
Sbjct: 375 caacccctcgggtcgacgtgcgagtccaggtaggacagcatgtacaccgtccgcgagtac 434
Query: 420 tgcttccatgggcggcccagg 440
| |||||| || |||||||||
Sbjct: 435 tccttccacggccggcccagg 455
>dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-H03, full
insert sequence
Length = 1859
Score = 93.7 bits (47), Expect = 8e-017
Identities = 163/201 (81%), Gaps = 3/201 (1%)
Strand = Plus / Minus
Query: 243 gtgatgacgcggtaccccttccacttgacccgcccggacgtgccggcgccgggccccgtg 302
||||||||| ||||||| ||| ||||| || |||| ||||| ||||||||| ||| |
Sbjct: 1601 gtgatgacgtggtacccgggccagttgacgcggccggccgtgctggcgccggggccctgg 1542
Query: 303 ttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg---ccgttccactcgagc 359
||| ||||||||||||| ||||||| | |||||||||| | |||||||||||||||
Sbjct: 1541 ttctggtactcgccgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagc 1482
Query: 360 cagccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtac 419
|| || ||||||||| |||||||||| | ||| ||| ||||||||| || ||||||
Sbjct: 1481 caacccctcgggtcgacgtgcgagtccaggtaggacagcatgtacaccgtccgcgagtac 1422
Query: 420 tgcttccatgggcggcccagg 440
| |||||| || |||||||||
Sbjct: 1421 tccttccacggccggcccagg 1401
>dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041N03, full
insert sequence
Length = 1849
Score = 93.7 bits (47), Expect = 8e-017
Identities = 163/201 (81%), Gaps = 3/201 (1%)
Strand = Plus / Minus
Query: 243 gtgatgacgcggtaccccttccacttgacccgcccggacgtgccggcgccgggccccgtg 302
||||||||| ||||||| ||| ||||| || |||| ||||| ||||||||| ||| |
Sbjct: 1601 gtgatgacgtggtacccgggccagttgacgcggccggccgtgctggcgccggggccctgg 1542
Query: 303 ttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg---ccgttccactcgagc 359
||| ||||||||||||| ||||||| | |||||||||| | |||||||||||||||
Sbjct: 1541 ttctggtactcgccgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagc 1482
Query: 360 cagccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtac 419
|| || ||||||||| |||||||||| | ||| ||| ||||||||| || ||||||
Sbjct: 1481 caacccctcgggtcgacgtgcgagtccaggtaggacagcatgtacaccgtccgcgagtac 1422
Query: 420 tgcttccatgggcggcccagg 440
| |||||| || |||||||||
Sbjct: 1421 tccttccacggccggcccagg 1401
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0415A04
Length = 160669
Score = 93.7 bits (47), Expect = 8e-017
Identities = 163/201 (81%), Gaps = 3/201 (1%)
Strand = Plus / Minus
Query: 243 gtgatgacgcggtaccccttccacttgacccgcccggacgtgccggcgccgggccccgtg 302
||||||||| ||||||| ||| ||||| || |||| ||||| ||||||||| ||| |
Sbjct: 129245 gtgatgacgtggtacccgggccagttgacgcggccggccgtgctggcgccggggccctgg 129186
Query: 303 ttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg---ccgttccactcgagc 359
||| ||||||||||||| ||||||| | |||||||||| | |||||||||||||||
Sbjct: 129185 ttctggtactcgccgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagc 129126
Query: 360 cagccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtac 419
|| || ||||||||| |||||||||| | ||| ||| ||||||||| || ||||||
Sbjct: 129125 caacccctcgggtcgacgtgcgagtccaggtaggacagcatgtacaccgtccgcgagtac 129066
Query: 420 tgcttccatgggcggcccagg 440
| |||||| || |||||||||
Sbjct: 129065 tccttccacggccggcccagg 129045
>gb|AACV01002476.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002476, whole
genome shotgun sequence
Length = 16268
Score = 93.7 bits (47), Expect = 8e-017
Identities = 163/201 (81%), Gaps = 3/201 (1%)
Strand = Plus / Plus
Query: 243 gtgatgacgcggtaccccttccacttgacccgcccggacgtgccggcgccgggccccgtg 302
||||||||| ||||||| ||| ||||| || |||| ||||| ||||||||| ||| |
Sbjct: 14474 gtgatgacgtggtacccgggccagttgacgcggccggccgtgctggcgccggggccctgg 14533
Query: 303 ttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg---ccgttccactcgagc 359
||| ||||||||||||| ||||||| | |||||||||| | |||||||||||||||
Sbjct: 14534 ttctggtactcgccgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagc 14593
Query: 360 cagccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtac 419
|| || ||||||||| |||||||||| | ||| ||| ||||||||| || ||||||
Sbjct: 14594 caacccctcgggtcgacgtgcgagtccaggtaggacagcatgtacaccgtccgcgagtac 14653
Query: 420 tgcttccatgggcggcccagg 440
| |||||| || |||||||||
Sbjct: 14654 tccttccacggccggcccagg 14674
>ref|NM_190847.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1692
Score = 93.7 bits (47), Expect = 8e-017
Identities = 163/201 (81%), Gaps = 3/201 (1%)
Strand = Plus / Minus
Query: 243 gtgatgacgcggtaccccttccacttgacccgcccggacgtgccggcgccgggccccgtg 302
||||||||| ||||||| ||| ||||| || |||| ||||| ||||||||| ||| |
Sbjct: 1595 gtgatgacgtggtacccgggccagttgacgcggccggccgtgctggcgccggggccctgg 1536
Query: 303 ttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg---ccgttccactcgagc 359
||| ||||||||||||| ||||||| | |||||||||| | |||||||||||||||
Sbjct: 1535 ttctggtactcgccgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagc 1476
Query: 360 cagccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtac 419
|| || ||||||||| |||||||||| | ||| ||| ||||||||| || ||||||
Sbjct: 1475 caacccctcgggtcgacgtgcgagtccaggtaggacagcatgtacaccgtccgcgagtac 1416
Query: 420 tgcttccatgggcggcccagg 440
| |||||| || |||||||||
Sbjct: 1415 tccttccacggccggcccagg 1395
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 93.7 bits (47), Expect = 8e-017
Identities = 163/201 (81%), Gaps = 3/201 (1%)
Strand = Plus / Minus
Query: 243 gtgatgacgcggtaccccttccacttgacccgcccggacgtgccggcgccgggccccgtg 302
||||||||| ||||||| ||| ||||| || |||| ||||| ||||||||| ||| |
Sbjct: 7981132 gtgatgacgtggtacccgggccagttgacgcggccggccgtgctggcgccggggccctgg 7981073
Query: 303 ttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg---ccgttccactcgagc 359
||| ||||||||||||| ||||||| | |||||||||| | |||||||||||||||
Sbjct: 7981072 ttctggtactcgccgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagc 7981013
Query: 360 cagccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtac 419
|| || ||||||||| |||||||||| | ||| ||| ||||||||| || ||||||
Sbjct: 7981012 caacccctcgggtcgacgtgcgagtccaggtaggacagcatgtacaccgtccgcgagtac 7980953
Query: 420 tgcttccatgggcggcccagg 440
| |||||| || |||||||||
Sbjct: 7980952 tccttccacggccggcccagg 7980932
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct: 12728561 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccac 12728606
Score = 54.0 bits (27), Expect = 7e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 401 gtacaccgtgcgggagtactgcttccatgggcggcccaggtag 443
|||||||||||| ||||||| |||||| || ||||||||||||
Sbjct: 12728654 gtacaccgtgcgcgagtactccttccagggccggcccaggtag 12728696
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 93.7 bits (47), Expect = 8e-017
Identities = 163/201 (81%), Gaps = 3/201 (1%)
Strand = Plus / Minus
Query: 243 gtgatgacgcggtaccccttccacttgacccgcccggacgtgccggcgccgggccccgtg 302
||||||||| ||||||| ||| ||||| || |||| ||||| ||||||||| ||| |
Sbjct: 7913797 gtgatgacgtggtacccgggccagttgacgcggccggccgtgctggcgccggggccctgg 7913738
Query: 303 ttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg---ccgttccactcgagc 359
||| ||||||||||||| ||||||| | |||||||||| | |||||||||||||||
Sbjct: 7913737 ttctggtactcgccgtagaagagcgtcttgagcgcgaagtcggcgccgttccactcgagc 7913678
Query: 360 cagccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtac 419
|| || ||||||||| |||||||||| | ||| ||| ||||||||| || ||||||
Sbjct: 7913677 caacccctcgggtcgacgtgcgagtccaggtaggacagcatgtacaccgtccgcgagtac 7913618
Query: 420 tgcttccatgggcggcccagg 440
| |||||| || |||||||||
Sbjct: 7913617 tccttccacggccggcccagg 7913597
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct: 12464116 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccac 12464161
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct: 12462656 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccac 12462701
Score = 54.0 bits (27), Expect = 7e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 401 gtacaccgtgcgggagtactgcttccatgggcggcccaggtag 443
|||||||||||| ||||||| |||||| || ||||||||||||
Sbjct: 12464209 gtacaccgtgcgcgagtactccttccagggccggcccaggtag 12464251
Score = 54.0 bits (27), Expect = 7e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 401 gtacaccgtgcgggagtactgcttccatgggcggcccaggtag 443
|||||||||||| ||||||| |||||| || ||||||||||||
Sbjct: 12462749 gtacaccgtgcgcgagtactccttccagggccggcccaggtag 12462791
>gb|CB675160.1|CB675160 OSJNEe10L01.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10L01 3', mRNA sequence
Length = 572
Score = 85.7 bits (43), Expect = 2e-014
Identities = 162/201 (80%), Gaps = 3/201 (1%)
Strand = Plus / Plus
Query: 243 gtgatgacgcggtaccccttccacttgacccgcccggacgtgccggcgccgggccccgtg 302
||||||||| ||||||| ||| ||||| || |||| ||||| ||||||||| ||| |
Sbjct: 233 gtgatgacgtggtacccgggccagttgacgcggccggccgtgctggcgccggggccctgg 292
Query: 303 ttcatgtactcgccgtagtagagcgtgtcgagcgcgaagctg---ccgttccactcgagc 359
||| |||||||||||| ||||||| | |||||||||| | |||||||||||||||
Sbjct: 293 ttctggtactcgccgtacaagagcgtcttgagcgcgaagtcggcgccgttccactcgagc 352
Query: 360 cagccggccgggtcgaccagcgagtccagctccgactgcaggtacaccgtgcgggagtac 419
|| || ||||||||| |||||||||| | ||| ||| ||||||||| || ||||||
Sbjct: 353 caacccctcgggtcgacgtgcgagtccaggtaggacagcatgtacaccgtccgcgagtac 412
Query: 420 tgcttccatgggcggcccagg 440
| |||||| || |||||||||
Sbjct: 413 tccttccacggccggcccagg 433
>dbj|AK107019.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H06, full
insert sequence
Length = 1797
Score = 69.9 bits (35), Expect = 1e-009
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 1554 gttcatgtactccccgtagtagagcgtgtcgagcgcgaa 1516
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1756_H07
Length = 217205
Score = 69.9 bits (35), Expect = 1e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 69609 gttcatgtactccccgtagtagagcgtgtcgagcgcgaa 69647
>gb|AACV01003929.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003929, whole
genome shotgun sequence
Length = 71112
Score = 69.9 bits (35), Expect = 1e-009
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 57323 gttcatgtactccccgtagtagagcgtgtcgagcgcgaa 57285
>ref|XM_465003.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1797
Score = 69.9 bits (35), Expect = 1e-009
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 1554 gttcatgtactccccgtagtagagcgtgtcgagcgcgaa 1516
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 69.9 bits (35), Expect = 1e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 4896362 gttcatgtactccccgtagtagagcgtgtcgagcgcgaa 4896400
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 69.9 bits (35), Expect = 1e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 10898018 gttcatgtactccccgtagtagagcgtgtcgagcgcgaa 10898056
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 69.9 bits (35), Expect = 1e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 10898018 gttcatgtactccccgtagtagagcgtgtcgagcgcgaa 10898056
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 69.9 bits (35), Expect = 1e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 302 gttcatgtactcgccgtagtagagcgtgtcgagcgcgaa 340
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 10863410 gttcatgtactccccgtagtagagcgtgtcgagcgcgaa 10863448
>dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chromosome 1 clone B1027B04, ***
SEQUENCING IN PROGRESS ***
Length = 168033
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct: 16185 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccac 16230
Score = 54.0 bits (27), Expect = 7e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 401 gtacaccgtgcgggagtactgcttccatgggcggcccaggtag 443
|||||||||||| ||||||| |||||| || ||||||||||||
Sbjct: 16278 gtacaccgtgcgcgagtactccttccagggccggcccaggtag 16320
>dbj|AK101962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076D13, full
insert sequence
Length = 1829
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct: 1531 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccac 1486
Score = 54.0 bits (27), Expect = 7e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 401 gtacaccgtgcgggagtactgcttccatgggcggcccaggtag 443
|||||||||||| ||||||| |||||| || ||||||||||||
Sbjct: 1438 gtacaccgtgcgcgagtactccttccagggccggcccaggtag 1396
>dbj|AK105682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B06, full
insert sequence
Length = 1731
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct: 1530 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccac 1485
Score = 54.0 bits (27), Expect = 7e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 401 gtacaccgtgcgggagtactgcttccatgggcggcccaggtag 443
|||||||||||| ||||||| |||||| || ||||||||||||
Sbjct: 1437 gtacaccgtgcgcgagtactccttccagggccggcccaggtag 1395
>gb|AACV01002791.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002791,
whole genome shotgun sequence
Length = 1642
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct: 234 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccac 189
Score = 54.0 bits (27), Expect = 7e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 401 gtacaccgtgcgggagtactgcttccatgggcggcccaggtag 443
|||||||||||| ||||||| |||||| || ||||||||||||
Sbjct: 141 gtacaccgtgcgcgagtactccttccagggccggcccaggtag 99
>gb|AACV01002792.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002792, whole
genome shotgun sequence
Length = 4701
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 308 gtactcgccgtagtagagcgtgtcgagcgcgaagctgccgttccac 353
||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct: 3525 gtactcgccgtagtagagcgtcttgagcgcgaagtcgccgttccac 3480
Score = 54.0 bits (27), Expect = 7e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 401 gtacaccgtgcgggagtactgcttccatgggcggcccaggtag 443
|||||||||||| ||||||| |||||| || ||||||||||||
Sbjct: 3432 gtacaccgtgcgcgagtactccttccagggccggcccaggtag 3390
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,160,419
Number of Sequences: 438736
Number of extensions: 1160419
Number of successful extensions: 19932
Number of sequences better than 0.5: 156
Number of HSP's better than 0.5 without gapping: 173
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18014
Number of HSP's gapped (non-prelim): 1891
length of query: 457
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 436
effective length of database: 2,791,206,460
effective search space: 1216966016560
effective search space used: 1216966016560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)