BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204680.2.1
(672 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB655656.1|CB655656 OSJNEc09E12.r OSJNEc Oryza sativa (j... 529 e-148
dbj|AB096083.1| Oryza sativa (japonica cultivar-group) BADH... 529 e-148
dbj|AK060461.1| Oryza sativa (japonica cultivar-group) cDNA... 529 e-148
dbj|AK071221.1| Oryza sativa (japonica cultivar-group) cDNA... 529 e-148
ref|XM_482470.1| Oryza sativa (japonica cultivar-group), mRNA 529 e-148
gb|CB649659.1|CB649659 OSJNEb13L16.r OSJNEb Oryza sativa (j... 521 e-145
gb|CF311480.1|CF311480 ABF--06-L10.g1 ABF3-overexpressing t... 373 e-101
gb|C19110.1|C19110 C19110 Rice panicle at flowering stage O... 303 6e-080
gb|CF329626.1|CF329626 NACL--05-A07.g1 Rice callus plasmid ... 266 1e-068
gb|CF311479.1|CF311479 ABF--06-L10.b1 ABF3-overexpressing t... 252 2e-064
gb|C98989.1|C98989 C98989 Rice panicle at flowering stage O... 220 7e-055
dbj|AP004463.2| Oryza sativa (japonica cultivar-group) geno... 131 5e-028
dbj|AP005537.3| Oryza sativa (japonica cultivar-group) geno... 131 5e-028
gb|AACV01018493.1| Oryza sativa (japonica cultivar-group) c... 131 5e-028
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 131 5e-028
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 131 5e-028
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 131 5e-028
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 131 5e-028
gb|CF329625.1|CF329625 NACL--05-A07.b1 Rice callus plasmid ... 98 7e-018
gb|CB663531.1|CB663531 OSJNEd08J20.r OSJNEd Oryza sativa (j... 80 2e-012
dbj|AK103582.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
ref|XM_472778.1| Oryza sativa (japonica cultivar-group), p... 80 2e-012
dbj|AB001348.1| Oryza sativa (japonica cultivar-group) gene... 76 3e-011
gb|AACV01009925.1| Oryza sativa (japonica cultivar-group) c... 76 3e-011
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 76 3e-011
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromoso... 76 3e-011
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 76 3e-011
dbj|AG211653.1| Oryza sativa (japonica cultivar-group) DNA,... 54 1e-004
gb|AQ867077.1|AQ867077 nbeb0029D22f CUGI Rice BAC Library (... 42 0.38
dbj|AP004573.3| Oryza sativa (japonica cultivar-group) geno... 42 0.38
gb|AACV01002092.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
gb|AACV01016412.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.38
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 42 0.38
dbj|AP003223.3| Oryza sativa (japonica cultivar-group) geno... 42 0.38
dbj|AP003264.3| Oryza sativa (japonica cultivar-group) geno... 42 0.38
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 42 0.38
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.38
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.38
>gb|CB655656.1|CB655656 OSJNEc09E12.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09E12 3', mRNA sequence
Length = 836
Score = 529 bits (267), Expect = e-148
Identities = 480/551 (87%)
Strand = Plus / Minus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 744 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 685
Query: 68 agtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctga 127
|||||||||||||||| | || |||| | |||||||||||||||||||| |||||||
Sbjct: 684 agtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctga 625
Query: 128 ctggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattatta 187
|||| || |||||||| |||||| ||||| || |||| ||||||||| || || ||||
Sbjct: 624 ctggtggggttagacccaagcatctggagaaaggtttctatattgaacccacaatcatta 565
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
||||| || ||||||||| |||| |||||||| ||||| ||||||||||| || || |
Sbjct: 564 ctgatgtcgatacatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtg 505
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
| |||||||||||||||||||| |||||||| ||| | ||||||||||| || ||||||
Sbjct: 504 tgaaagaatttagcactgaagaagaagccattgaattggccaacgatactcattatggtc 445
Query: 308 tggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattg 367
||||||||||||| |||| ||||| || ||||| |||||||| ||| |||||||||| |
Sbjct: 444 tggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcg 385
Query: 368 acgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcg 427
| || ||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 atgccggaattatctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcg 325
Query: 428 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 487
||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct: 324 ggaacaagcgcagcggctttggacgcgagctcggagaagggggcattgacaactacctaa 265
Query: 488 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccct 547
||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||| |
Sbjct: 264 gcgtcaagcaagtgacggagtacgcctccgatgagccgtggggatggtacaaatcccctt 205
Query: 548 ccaagctgtaa 558
|||||||||||
Sbjct: 204 ccaagctgtaa 194
>dbj|AB096083.1| Oryza sativa (japonica cultivar-group) BADH2 mRNA for betaine
aldehyde dehydrogenase, complete cds
Length = 1512
Score = 529 bits (267), Expect = e-148
Identities = 480/551 (87%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 962 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 1021
Query: 68 agtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctga 127
|||||||||||||||| | || |||| | |||||||||||||||||||| |||||||
Sbjct: 1022 agtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctga 1081
Query: 128 ctggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattatta 187
|||| || |||||||| |||||| ||||| || |||| ||||||||| || || ||||
Sbjct: 1082 ctggtggggttagacccaagcatctggagaaaggtttctatattgaacccacaatcatta 1141
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
||||| || ||||||||| |||| |||||||| ||||| ||||||||||| || || |
Sbjct: 1142 ctgatgtcgatacatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtg 1201
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
| |||||||||||||||||||| |||||||| ||| | ||||||||||| || ||||||
Sbjct: 1202 tgaaagaatttagcactgaagaagaagccattgaattggccaacgatactcattatggtc 1261
Query: 308 tggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattg 367
||||||||||||| |||| ||||| || ||||| |||||||| ||| |||||||||| |
Sbjct: 1262 tggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcg 1321
Query: 368 acgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcg 427
| || ||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 1322 atgccggaattatctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcg 1381
Query: 428 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 487
||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct: 1382 ggaacaagcgcagcggctttggacgcgagctcggagaagggggcattgacaactacctaa 1441
Query: 488 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccct 547
||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||| |
Sbjct: 1442 gcgtcaagcaagtgacggagtacgcctccgatgagccgtggggatggtacaaatcccctt 1501
Query: 548 ccaagctgtaa 558
|||||||||||
Sbjct: 1502 ccaagctgtaa 1512
>dbj|AK060461.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-B10, full
insert sequence
Length = 1317
Score = 529 bits (267), Expect = e-148
Identities = 480/551 (87%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 620 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 679
Query: 68 agtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctga 127
|||||||||||||||| | || |||| | |||||||||||||||||||| |||||||
Sbjct: 680 agtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctga 739
Query: 128 ctggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattatta 187
|||| || |||||||| |||||| ||||| || |||| ||||||||| || || ||||
Sbjct: 740 ctggtggggttagacccaagcatctggagaaaggtttctatattgaacccacaatcatta 799
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
||||| || ||||||||| |||| |||||||| ||||| ||||||||||| || || |
Sbjct: 800 ctgatgtcgatacatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtg 859
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
| |||||||||||||||||||| |||||||| ||| | ||||||||||| || ||||||
Sbjct: 860 tgaaagaatttagcactgaagaagaagccattgaattggccaacgatactcattatggtc 919
Query: 308 tggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattg 367
||||||||||||| |||| ||||| || ||||| |||||||| ||| |||||||||| |
Sbjct: 920 tggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcg 979
Query: 368 acgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcg 427
| || ||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 980 atgccggaattatctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcg 1039
Query: 428 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 487
||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct: 1040 ggaacaagcgcagcggctttggacgcgagctcggagaagggggcattgacaactacctaa 1099
Query: 488 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccct 547
||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||| |
Sbjct: 1100 gcgtcaagcaagtgacggagtacgcctccgatgagccgtggggatggtacaaatcccctt 1159
Query: 548 ccaagctgtaa 558
|||||||||||
Sbjct: 1160 ccaagctgtaa 1170
>dbj|AK071221.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C02, full
insert sequence
Length = 1807
Score = 529 bits (267), Expect = e-148
Identities = 480/551 (87%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1110 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 1169
Query: 68 agtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctga 127
|||||||||||||||| | || |||| | |||||||||||||||||||| |||||||
Sbjct: 1170 agtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctga 1229
Query: 128 ctggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattatta 187
|||| || |||||||| |||||| ||||| || |||| ||||||||| || || ||||
Sbjct: 1230 ctggtggggttagacccaagcatctggagaaaggtttctatattgaacccacaatcatta 1289
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
||||| || ||||||||| |||| |||||||| ||||| ||||||||||| || || |
Sbjct: 1290 ctgatgtcgatacatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtg 1349
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
| |||||||||||||||||||| |||||||| ||| | ||||||||||| || ||||||
Sbjct: 1350 tgaaagaatttagcactgaagaagaagccattgaattggccaacgatactcattatggtc 1409
Query: 308 tggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattg 367
||||||||||||| |||| ||||| || ||||| |||||||| ||| |||||||||| |
Sbjct: 1410 tggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcg 1469
Query: 368 acgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcg 427
| || ||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 1470 atgccggaattatctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcg 1529
Query: 428 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 487
||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct: 1530 ggaacaagcgcagcggctttggacgcgagctcggagaagggggcattgacaactacctaa 1589
Query: 488 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccct 547
||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||| |
Sbjct: 1590 gcgtcaagcaagtgacggagtacgcctccgatgagccgtggggatggtacaaatcccctt 1649
Query: 548 ccaagctgtaa 558
|||||||||||
Sbjct: 1650 ccaagctgtaa 1660
>ref|XM_482470.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1806
Score = 529 bits (267), Expect = e-148
Identities = 480/551 (87%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1109 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 1168
Query: 68 agtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctga 127
|||||||||||||||| | || |||| | |||||||||||||||||||| |||||||
Sbjct: 1169 agtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctga 1228
Query: 128 ctggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattatta 187
|||| || |||||||| |||||| ||||| || |||| ||||||||| || || ||||
Sbjct: 1229 ctggtggggttagacccaagcatctggagaaaggtttctatattgaacccacaatcatta 1288
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
||||| || ||||||||| |||| |||||||| ||||| ||||||||||| || || |
Sbjct: 1289 ctgatgtcgatacatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtg 1348
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
| |||||||||||||||||||| |||||||| ||| | ||||||||||| || ||||||
Sbjct: 1349 tgaaagaatttagcactgaagaagaagccattgaattggccaacgatactcattatggtc 1408
Query: 308 tggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattg 367
||||||||||||| |||| ||||| || ||||| |||||||| ||| |||||||||| |
Sbjct: 1409 tggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcg 1468
Query: 368 acgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcg 427
| || ||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 1469 atgccggaattatctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcg 1528
Query: 428 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 487
||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct: 1529 ggaacaagcgcagcggctttggacgcgagctcggagaagggggcattgacaactacctaa 1588
Query: 488 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccct 547
||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||| |
Sbjct: 1589 gcgtcaagcaagtgacggagtacgcctccgatgagccgtggggatggtacaaatcccctt 1648
Query: 548 ccaagctgtaa 558
|||||||||||
Sbjct: 1649 ccaagctgtaa 1659
>gb|CB649659.1|CB649659 OSJNEb13L16.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13L16 3', mRNA sequence
Length = 870
Score = 521 bits (263), Expect = e-145
Identities = 479/551 (86%)
Strand = Plus / Minus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 835 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 776
Query: 68 agtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctga 127
|||||||||||||||| | || |||| | |||||||||||||||||||| |||||||
Sbjct: 775 agtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctga 716
Query: 128 ctggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattatta 187
|||| || |||||||| |||||| ||||| || |||| ||||||||| || || ||||
Sbjct: 715 ctggtggggttagacccaagcatctggagaaaggtttctatattgaacccacaatcatta 656
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
||||| || ||||||||| |||| |||||||| ||||| ||||||||||| || || |
Sbjct: 655 ctgatgtcgatacatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtg 596
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
| |||||||||||||||||||| |||||||| ||| | ||||||||||| || ||||||
Sbjct: 595 tgaaagaatttagcactgaagaagaagccattgaattggccaacgatactcattatggtc 536
Query: 308 tggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgaggagattg 367
||||||||||||| |||| ||||| || ||||| |||||||| ||| |||||||||| |
Sbjct: 535 tggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcg 476
Query: 368 acgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcg 427
| || ||| ||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 475 atgccggaattatctgggcgaactgctcgcaaccctgcttctgccaagctccatggggcg 416
Query: 428 ggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctga 487
||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct: 415 ggaacaagcgcagcggctttggacgcgagctcggagaagggggcattgacaactacctaa 356
Query: 488 gcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccct 547
||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||| |
Sbjct: 355 gcgtcaagcaagtgacggagtacgcctccgatgagccgtggggatggtacaaatcccctt 296
Query: 548 ccaagctgtaa 558
|||||||||||
Sbjct: 295 ccaagctgtaa 285
>gb|CF311480.1|CF311480 ABF--06-L10.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-L10, mRNA sequence
Length = 547
Score = 373 bits (188), Expect = e-101
Identities = 317/360 (88%)
Strand = Plus / Minus
Query: 199 acatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaattt 258
||||||||| |||| |||||||| ||||| ||||||||||| || || || |||||||||
Sbjct: 530 acatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaattt 471
Query: 259 agcactgaagatgaagccatcgaacttgccaacgatacacagtatggtttggctggtgct 318
||||||||||| |||||||| ||| | ||||||||||| || |||||| |||||||||||
Sbjct: 470 agcactgaagaagaagccattgaattggccaacgatactcattatggtctggctggtgct 411
Query: 319 gtaatttctggtgatcgggagcgttgccagaggttatctgaggagattgacgctggatgc 378
|| |||| ||||| || ||||| |||||||| ||| |||||||||| || || |||
Sbjct: 410 gtgctttccggtgaccgcgagcgatgccagagattaactgaggagatcgatgccggaatt 351
Query: 379 atctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgc 438
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 350 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 291
Query: 439 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 498
|| || |||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 290 agcggctttggacgcgagctcggagaagggggcattgacaactacctaagcgtcaagcaa 231
Query: 499 gtcacggagtacatctctgatgagccgtggggatggtaccaatccccctccaagctgtaa 558
|| ||||||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 230 gtgacggagtacgcctccgatgagccgtggggatggtacaaatccccttccaagctgtaa 171
>gb|C19110.1|C19110 C19110 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3802_1A, mRNA sequence
Length = 460
Score = 303 bits (153), Expect = 6e-080
Identities = 365/433 (84%), Gaps = 3/433 (0%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 25 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 84
Query: 68 agtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctga 127
|||||||||||||||| | || |||| | |||||||||||||||||||| |||||||
Sbjct: 85 agtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctga 144
Query: 128 ctggaggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattatta 187
|||| || |||||||| |||||| ||||| || |||| |||||| || || || ||||
Sbjct: 145 ctggtggggttagacccaagcatctggagaaaggtttctatattgancccacaatcatta 204
Query: 188 ctgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgcg 247
||||| || ||||||||| |||| |||||||| ||||| ||||||||||| || || |
Sbjct: 205 ctgatgtcgatacatcaatgcaaatttggagggaagaagtttttggtccagtgctctgtg 264
Query: 248 ttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggtt 307
| ||||| |||||||||||||| |||||||| || | ||||||||||| || ||||||
Sbjct: 265 tgaaagantttagcactgaagaagaagccattganttggccaacgatactcattatggtc 324
Query: 308 tggctggtgctgtaatttctggtgatcg-ggagcgttgccagaggttatctgaggagatt 366
||||||||||||| |||| ||||| || | |||| |||||||| ||| ||||||||||
Sbjct: 325 tggctggtgctgtgctttccggtgaccgcgaagcgatgccagagattaactgaggagatc 384
Query: 367 gacgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccct-gggg 425
|| || ||| |||||||| | ||||||| || ||||||||||||||||||| | ||||
Sbjct: 385 gatgccggaattatctgggtgacctgctcg-aancctgcttctgccaagctccatggggg 443
Query: 426 cgggaacaagcgc 438
|||| ||||||||
Sbjct: 444 cggggacaagcgc 456
>gb|CF329626.1|CF329626 NACL--05-A07.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--05-A07, mRNA sequence
Length = 476
Score = 266 bits (134), Expect = 1e-068
Identities = 227/258 (87%)
Strand = Plus / Minus
Query: 301 tatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgag 360
|||||| ||||||||||||| |||| ||||| || ||||| ||||||| ||| |||||
Sbjct: 473 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagatattaactgag 414
Query: 361 gagattgacgctggatgcatctgggtaaactgctcgcaaccctgcttctgccaagctccc 420
||||| || || ||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 413 gagatcgatgccggaattatctgggtgaactgctcgcaaccctgcttttgccaagctcca 354
Query: 421 tggggcgggaacaagcgcagtggatttggacgtgagcttggagaagggggcattgataac 480
|||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| |||
Sbjct: 353 tggggcgggaacaagcgcagcggctttggacgcgagctcggagaagggggcattgacaac 294
Query: 481 tacctgagcgtcaagcaagtcacggagtacatctctgatgagccgtggggatggtaccaa 540
||||| |||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||
Sbjct: 293 tacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgtggggatggtacaaa 234
Query: 541 tccccctccaagctgtaa 558
||||| ||||||||||||
Sbjct: 233 tccccttccaagctgtaa 216
>gb|CF311479.1|CF311479 ABF--06-L10.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-L10, mRNA sequence
Length = 608
Score = 252 bits (127), Expect = 2e-064
Identities = 263/307 (85%), Gaps = 1/307 (0%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 302 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 361
Query: 68 agtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctga 127
|||||||||||||||| | || |||| | |||||||||||||||||||| |||||||
Sbjct: 362 agtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctga 421
Query: 128 ctgga-ggtgttagacctgcgcatcttgagaaggggttctttattgaaccaactattatt 186
|||| || |||||||| |||||| ||||| || |||| ||||||||| || || |||
Sbjct: 422 ctgggtggggttagacccaagcatctggagaaaggtttctatattgaacccacaatcatt 481
Query: 187 actgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctgtgc 246
|||||| || ||||||||| |||| |||||||| ||||| ||||||||||| || ||
Sbjct: 482 actgatgtcgatacatcaatgcaaatttggagggaagaagtttttggtccagtgctctgt 541
Query: 247 gttaaagaatttagcactgaagatgaagccatcgaacttgccaacgatacacagtatggt 306
|| |||||||||||||||||||| |||||||| ||| | ||||||||||| || ||||||
Sbjct: 542 gtgaaagaatttagcactgaagaagaagccattgaattggccaacgatactcattatggt 601
Query: 307 ttggctg 313
||||||
Sbjct: 602 ctggctg 608
>gb|C98989.1|C98989 C98989 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3802_3Z, mRNA sequence
Length = 363
Score = 220 bits (111), Expect = 7e-055
Identities = 164/181 (90%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 379 atctgggtaaactgctc-gcaaccctgcttctgccaagctccctggggcgggaacaagcg 437
|||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 21 atctgggtgaactgctccgcaaccctgcttctgccaagctccatggggcgggaacaagcg 80
Query: 438 cagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagca 497
|| || |||||||| ||||| | ||||||||||||||| |||||||| |||||||||||
Sbjct: 81 cancggctttggacgcgagctcgnagaagggggcattgacaactacctaagcgtcaagca 140
Query: 498 agtcacggagtacatctctgatgagccgtggggatggtaccaatccccctccaagctgta 557
||| ||||||||| ||| ||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 141 agtgacggagtacgcctccgatgagccgtggggatggtacaaatccccttccaagctgta 200
Query: 558 a 558
|
Sbjct: 201 a 201
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0456B03
Length = 152973
Score = 131 bits (66), Expect = 5e-028
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 379 atctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgc 438
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 8940 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 8999
Query: 439 agtggatttggacgtgagcttggagaaggg 468
|| || |||||||| ||||| |||||||||
Sbjct: 9000 agcggctttggacgcgagctcggagaaggg 9029
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 467 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 526
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 9126 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 9185
Query: 527 ggggatggtaccaatccccctccaagctgtaa 558
||||||||||| ||||||| ||||||||||||
Sbjct: 9186 ggggatggtacaaatccccttccaagctgtaa 9217
Score = 117 bits (59), Expect = 8e-024
Identities = 131/155 (84%)
Strand = Plus / Plus
Query: 147 gcatcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaat 206
|||||| ||||| || |||| ||||||||| || || ||||||||| || ||||||||
Sbjct: 8334 gcatctggagaaaggtttctatattgaacccacaatcattactgatgtcgatacatcaat 8393
Query: 207 ggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactga 266
| |||| |||||||| ||||| ||||||||||| || || || |||||||||||||||||
Sbjct: 8394 gcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaatttagcactga 8453
Query: 267 agatgaagccatcgaacttgccaacgatacacagt 301
||| |||||||| ||| | ||||||||||| ||||
Sbjct: 8454 agaagaagccattgaattggccaacgatactcagt 8488
Score = 99.6 bits (50), Expect = 2e-018
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7714 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 7773
Query: 68 ag 69
||
Sbjct: 7774 ag 7775
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 67 cagtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctg 126
||||||||||||||||| | || |||| | |||||||||||||||||||| ||||||
Sbjct: 8173 cagtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctg 8232
Query: 127 actggaggtgttagacc 143
||||| || ||||||||
Sbjct: 8233 actggtggggttagacc 8249
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 301 tatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgag 360
|||||| ||||||||||||| |||| ||||| || ||||| |||||||| ||| |||||
Sbjct: 8591 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 8650
Query: 361 g 361
|
Sbjct: 8651 g 8651
>dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0056L09
Length = 152910
Score = 131 bits (66), Expect = 5e-028
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 379 atctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgc 438
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 126058 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 126117
Query: 439 agtggatttggacgtgagcttggagaaggg 468
|| || |||||||| ||||| |||||||||
Sbjct: 126118 agcggctttggacgcgagctcggagaaggg 126147
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 467 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 526
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 126244 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 126303
Query: 527 ggggatggtaccaatccccctccaagctgtaa 558
||||||||||| ||||||| ||||||||||||
Sbjct: 126304 ggggatggtacaaatccccttccaagctgtaa 126335
Score = 117 bits (59), Expect = 8e-024
Identities = 131/155 (84%)
Strand = Plus / Plus
Query: 147 gcatcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaat 206
|||||| ||||| || |||| ||||||||| || || ||||||||| || ||||||||
Sbjct: 125452 gcatctggagaaaggtttctatattgaacccacaatcattactgatgtcgatacatcaat 125511
Query: 207 ggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactga 266
| |||| |||||||| ||||| ||||||||||| || || || |||||||||||||||||
Sbjct: 125512 gcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaatttagcactga 125571
Query: 267 agatgaagccatcgaacttgccaacgatacacagt 301
||| |||||||| ||| | ||||||||||| ||||
Sbjct: 125572 agaagaagccattgaattggccaacgatactcagt 125606
Score = 99.6 bits (50), Expect = 2e-018
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 124832 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 124891
Query: 68 ag 69
||
Sbjct: 124892 ag 124893
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 67 cagtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctg 126
||||||||||||||||| | || |||| | |||||||||||||||||||| ||||||
Sbjct: 125291 cagtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctg 125350
Query: 127 actggaggtgttagacc 143
||||| || ||||||||
Sbjct: 125351 actggtggggttagacc 125367
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 301 tatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgag 360
|||||| ||||||||||||| |||| ||||| || ||||| |||||||| ||| |||||
Sbjct: 125709 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 125768
Query: 361 g 361
|
Sbjct: 125769 g 125769
>gb|AACV01018493.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018493, whole
genome shotgun sequence
Length = 59473
Score = 131 bits (66), Expect = 5e-028
Identities = 84/90 (93%)
Strand = Plus / Minus
Query: 379 atctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgc 438
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 54259 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 54200
Query: 439 agtggatttggacgtgagcttggagaaggg 468
|| || |||||||| ||||| |||||||||
Sbjct: 54199 agcggctttggacgcgagctcggagaaggg 54170
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 467 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 526
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 54073 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 54014
Query: 527 ggggatggtaccaatccccctccaagctgtaa 558
||||||||||| ||||||| ||||||||||||
Sbjct: 54013 ggggatggtacaaatccccttccaagctgtaa 53982
Score = 117 bits (59), Expect = 8e-024
Identities = 131/155 (84%)
Strand = Plus / Minus
Query: 147 gcatcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaat 206
|||||| ||||| || |||| ||||||||| || || ||||||||| || ||||||||
Sbjct: 54865 gcatctggagaaaggtttctatattgaacccacaatcattactgatgtcgatacatcaat 54806
Query: 207 ggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactga 266
| |||| |||||||| ||||| ||||||||||| || || || |||||||||||||||||
Sbjct: 54805 gcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaatttagcactga 54746
Query: 267 agatgaagccatcgaacttgccaacgatacacagt 301
||| |||||||| ||| | ||||||||||| ||||
Sbjct: 54745 agaagaagccattgaattggccaacgatactcagt 54711
Score = 99.6 bits (50), Expect = 2e-018
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 55485 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 55426
Query: 68 ag 69
||
Sbjct: 55425 ag 55424
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 67 cagtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctg 126
||||||||||||||||| | || |||| | |||||||||||||||||||| ||||||
Sbjct: 55026 cagtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctg 54967
Query: 127 actggaggtgttagacc 143
||||| || ||||||||
Sbjct: 54966 actggtggggttagacc 54950
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 301 tatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgag 360
|||||| ||||||||||||| |||| ||||| || ||||| |||||||| ||| |||||
Sbjct: 54608 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 54549
Query: 361 g 361
|
Sbjct: 54548 g 54548
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 131 bits (66), Expect = 5e-028
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 379 atctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgc 438
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 20140223 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 20140282
Query: 439 agtggatttggacgtgagcttggagaaggg 468
|| || |||||||| ||||| |||||||||
Sbjct: 20140283 agcggctttggacgcgagctcggagaaggg 20140312
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 467 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 526
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 20140409 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 20140468
Query: 527 ggggatggtaccaatccccctccaagctgtaa 558
||||||||||| ||||||| ||||||||||||
Sbjct: 20140469 ggggatggtacaaatccccttccaagctgtaa 20140500
Score = 117 bits (59), Expect = 8e-024
Identities = 131/155 (84%)
Strand = Plus / Plus
Query: 147 gcatcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaat 206
|||||| ||||| || |||| ||||||||| || || ||||||||| || ||||||||
Sbjct: 20139617 gcatctggagaaaggtttctatattgaacccacaatcattactgatgtcgatacatcaat 20139676
Query: 207 ggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactga 266
| |||| |||||||| ||||| ||||||||||| || || || |||||||||||||||||
Sbjct: 20139677 gcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaatttagcactga 20139736
Query: 267 agatgaagccatcgaacttgccaacgatacacagt 301
||| |||||||| ||| | ||||||||||| ||||
Sbjct: 20139737 agaagaagccattgaattggccaacgatactcagt 20139771
Score = 99.6 bits (50), Expect = 2e-018
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 20138997 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 20139056
Query: 68 ag 69
||
Sbjct: 20139057 ag 20139058
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 67 cagtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctg 126
||||||||||||||||| | || |||| | |||||||||||||||||||| ||||||
Sbjct: 20139456 cagtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctg 20139515
Query: 127 actggaggtgttagacc 143
||||| || ||||||||
Sbjct: 20139516 actggtggggttagacc 20139532
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 301 tatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgag 360
|||||| ||||||||||||| |||| ||||| || ||||| |||||||| ||| |||||
Sbjct: 20139874 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 20139933
Query: 361 g 361
|
Sbjct: 20139934 g 20139934
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 131 bits (66), Expect = 5e-028
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 379 atctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgc 438
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 11618407 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 11618466
Query: 439 agtggatttggacgtgagcttggagaaggg 468
|| || |||||||| ||||| |||||||||
Sbjct: 11618467 agcggctttggacgcgagctcggagaaggg 11618496
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 467 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 526
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 11618593 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 11618652
Query: 527 ggggatggtaccaatccccctccaagctgtaa 558
||||||||||| ||||||| ||||||||||||
Sbjct: 11618653 ggggatggtacaaatccccttccaagctgtaa 11618684
Score = 117 bits (59), Expect = 8e-024
Identities = 131/155 (84%)
Strand = Plus / Plus
Query: 147 gcatcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaat 206
|||||| ||||| || |||| ||||||||| || || ||||||||| || ||||||||
Sbjct: 11617801 gcatctggagaaaggtttctatattgaacccacaatcattactgatgtcgatacatcaat 11617860
Query: 207 ggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactga 266
| |||| |||||||| ||||| ||||||||||| || || || |||||||||||||||||
Sbjct: 11617861 gcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaatttagcactga 11617920
Query: 267 agatgaagccatcgaacttgccaacgatacacagt 301
||| |||||||| ||| | ||||||||||| ||||
Sbjct: 11617921 agaagaagccattgaattggccaacgatactcagt 11617955
Score = 99.6 bits (50), Expect = 2e-018
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 11617181 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 11617240
Query: 68 ag 69
||
Sbjct: 11617241 ag 11617242
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 67 cagtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctg 126
||||||||||||||||| | || |||| | |||||||||||||||||||| ||||||
Sbjct: 11617640 cagtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctg 11617699
Query: 127 actggaggtgttagacc 143
||||| || ||||||||
Sbjct: 11617700 actggtggggttagacc 11617716
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 301 tatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgag 360
|||||| ||||||||||||| |||| ||||| || ||||| |||||||| ||| |||||
Sbjct: 11618058 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 11618117
Query: 361 g 361
|
Sbjct: 11618118 g 11618118
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 131 bits (66), Expect = 5e-028
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 379 atctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgc 438
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 19220413 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 19220472
Query: 439 agtggatttggacgtgagcttggagaaggg 468
|| || |||||||| ||||| |||||||||
Sbjct: 19220473 agcggctttggacgcgagctcggagaaggg 19220502
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 467 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 526
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 19220599 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 19220658
Query: 527 ggggatggtaccaatccccctccaagctgtaa 558
||||||||||| ||||||| ||||||||||||
Sbjct: 19220659 ggggatggtacaaatccccttccaagctgtaa 19220690
Score = 117 bits (59), Expect = 8e-024
Identities = 131/155 (84%)
Strand = Plus / Plus
Query: 147 gcatcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaat 206
|||||| ||||| || |||| ||||||||| || || ||||||||| || ||||||||
Sbjct: 19219807 gcatctggagaaaggtttctatattgaacccacaatcattactgatgtcgatacatcaat 19219866
Query: 207 ggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactga 266
| |||| |||||||| ||||| ||||||||||| || || || |||||||||||||||||
Sbjct: 19219867 gcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaatttagcactga 19219926
Query: 267 agatgaagccatcgaacttgccaacgatacacagt 301
||| |||||||| ||| | ||||||||||| ||||
Sbjct: 19219927 agaagaagccattgaattggccaacgatactcagt 19219961
Score = 99.6 bits (50), Expect = 2e-018
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 19219187 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 19219246
Query: 68 ag 69
||
Sbjct: 19219247 ag 19219248
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 67 cagtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctg 126
||||||||||||||||| | || |||| | |||||||||||||||||||| ||||||
Sbjct: 19219646 cagtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctg 19219705
Query: 127 actggaggtgttagacc 143
||||| || ||||||||
Sbjct: 19219706 actggtggggttagacc 19219722
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 301 tatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgag 360
|||||| ||||||||||||| |||| ||||| || ||||| |||||||| ||| |||||
Sbjct: 19220064 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 19220123
Query: 361 g 361
|
Sbjct: 19220124 g 19220124
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 131 bits (66), Expect = 5e-028
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 379 atctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgc 438
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 20378310 atctgggtgaactgctcgcaaccctgcttctgccaagctccatggggcgggaacaagcgc 20378369
Query: 439 agtggatttggacgtgagcttggagaaggg 468
|| || |||||||| ||||| |||||||||
Sbjct: 20378370 agcggctttggacgcgagctcggagaaggg 20378399
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 467 ggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgagccgt 526
|||||||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 20378496 ggggcattgacaactacctaagcgtcaagcaagtgacggagtacgcctccgatgagccgt 20378555
Query: 527 ggggatggtaccaatccccctccaagctgtaa 558
||||||||||| ||||||| ||||||||||||
Sbjct: 20378556 ggggatggtacaaatccccttccaagctgtaa 20378587
Score = 117 bits (59), Expect = 8e-024
Identities = 131/155 (84%)
Strand = Plus / Plus
Query: 147 gcatcttgagaaggggttctttattgaaccaactattattactgatatcaccacatcaat 206
|||||| ||||| || |||| ||||||||| || || ||||||||| || ||||||||
Sbjct: 20377704 gcatctggagaaaggtttctatattgaacccacaatcattactgatgtcgatacatcaat 20377763
Query: 207 ggaaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactga 266
| |||| |||||||| ||||| ||||||||||| || || || |||||||||||||||||
Sbjct: 20377764 gcaaatttggagggaagaagtttttggtccagtgctctgtgtgaaagaatttagcactga 20377823
Query: 267 agatgaagccatcgaacttgccaacgatacacagt 301
||| |||||||| ||| | ||||||||||| ||||
Sbjct: 20377824 agaagaagccattgaattggccaacgatactcagt 20377858
Score = 99.6 bits (50), Expect = 2e-018
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 20377084 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 20377143
Query: 68 ag 69
||
Sbjct: 20377144 ag 20377145
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 67 cagtatgagaagattaaaaagttcatatcgaatgccaaaagccaaggtgctactattctg 126
||||||||||||||||| | || |||| | |||||||||||||||||||| ||||||
Sbjct: 20377543 cagtatgagaagattaagcaatttgtatctaccgccaaaagccaaggtgctaccattctg 20377602
Query: 127 actggaggtgttagacc 143
||||| || ||||||||
Sbjct: 20377603 actggtggggttagacc 20377619
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 301 tatggtttggctggtgctgtaatttctggtgatcgggagcgttgccagaggttatctgag 360
|||||| ||||||||||||| |||| ||||| || ||||| |||||||| ||| |||||
Sbjct: 20377961 tatggtctggctggtgctgtgctttccggtgaccgcgagcgatgccagagattaactgag 20378020
Query: 361 g 361
|
Sbjct: 20378021 g 20378021
>gb|CF329625.1|CF329625 NACL--05-A07.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--05-A07, mRNA sequence
Length = 417
Score = 97.6 bits (49), Expect = 7e-018
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 8 ttaaggtttcggatccacttgaagagggttgcaggcttgggccagttgttagtgaaggac 67
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 357 ttaaggtgtcagatccacttgaagagggttgcaggcttgggcccgttgttagtgaaggac 416
Query: 68 a 68
|
Sbjct: 417 a 417
>gb|CB663531.1|CB663531 OSJNEd08J20.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08J20 3', mRNA sequence
Length = 862
Score = 79.8 bits (40), Expect = 2e-012
Identities = 136/168 (80%)
Strand = Plus / Minus
Query: 159 ggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctggag 218
||||||||||||||| || |||||||| || || | | |||||||||| |||| ||| |
Sbjct: 683 ggggttctttattgagcctactattataacaaatgttagcacatcaatgcaaatttggcg 624
Query: 219 ggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagccat 278
|||||||||||||| || ||| | ||||||||||||||||| || || |||||| |
Sbjct: 623 agaggaagtctttggaccggtcatctgcgttaaagaatttaggacagagcgtgaagcagt 564
Query: 279 cgaacttgccaacgatacacagtatggtttggctggtgctgtaatttc 326
|||||||| || ||||| || |||||| | ||||| ||||| |||||
Sbjct: 563 agaacttgcaaatgatactcactatggtctagctggcgctgtgatttc 516
Score = 75.8 bits (38), Expect = 3e-011
Identities = 98/118 (83%)
Strand = Plus / Minus
Query: 386 taaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggat 445
|||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |
Sbjct: 456 taaattgctcgcaaccatgctttgttcaagctccatggggagggaacaagcggagtggtt 397
Query: 446 ttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcac 503
|||| || ||||| ||| | ||||| | ||||||||| ||||||| |||||||||||
Sbjct: 396 ttggccgggagctaggacagtggggcctcgataactacttgagcgtgaagcaagtcac 339
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 19 gatccacttgaagagggttgcaggcttgggccagttgttagtgaaggacagtat 72
|||||||| ||||| ||||||||||| ||| |||| ||||||||||| ||||||
Sbjct: 823 gatccactagaagaaggttgcaggctggggtcagtcgttagtgaagggcagtat 770
>dbj|AK103582.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133A13, full
insert sequence
Length = 1908
Score = 79.8 bits (40), Expect = 2e-012
Identities = 136/168 (80%)
Strand = Plus / Plus
Query: 159 ggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctggag 218
||||||||||||||| || |||||||| || || | | |||||||||| |||| ||| |
Sbjct: 1232 ggggttctttattgagcctactattataacaaatgttagcacatcaatgcaaatttggcg 1291
Query: 219 ggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagccat 278
|||||||||||||| || ||| | ||||||||||||||||| || || |||||| |
Sbjct: 1292 agaggaagtctttggaccggtcatctgcgttaaagaatttaggacagagcgtgaagcagt 1351
Query: 279 cgaacttgccaacgatacacagtatggtttggctggtgctgtaatttc 326
|||||||| || ||||| || |||||| | ||||| ||||| |||||
Sbjct: 1352 agaacttgcaaatgatactcactatggtctagctggcgctgtgatttc 1399
Score = 75.8 bits (38), Expect = 3e-011
Identities = 98/118 (83%)
Strand = Plus / Plus
Query: 386 taaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggat 445
|||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |
Sbjct: 1459 taaattgctcgcaaccatgctttgttcaagctccatggggagggaacaagcggagtggtt 1518
Query: 446 ttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcac 503
|||| || ||||| ||| | ||||| | ||||||||| ||||||| |||||||||||
Sbjct: 1519 ttggccgggagctaggacagtggggcctcgataactacttgagcgtgaagcaagtcac 1576
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 19 gatccacttgaagagggttgcaggcttgggccagttgttagtgaaggacagtat 72
|||||||| ||||| ||||||||||| ||| |||| ||||||||||| ||||||
Sbjct: 1092 gatccactagaagaaggttgcaggctggggtcagtcgttagtgaagggcagtat 1145
>ref|XM_472778.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1518
Score = 79.8 bits (40), Expect = 2e-012
Identities = 136/168 (80%)
Strand = Plus / Plus
Query: 159 ggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctggag 218
||||||||||||||| || |||||||| || || | | |||||||||| |||| ||| |
Sbjct: 1119 ggggttctttattgagcctactattataacaaatgttagcacatcaatgcaaatttggcg 1178
Query: 219 ggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagccat 278
|||||||||||||| || ||| | ||||||||||||||||| || || |||||| |
Sbjct: 1179 agaggaagtctttggaccggtcatctgcgttaaagaatttaggacagagcgtgaagcagt 1238
Query: 279 cgaacttgccaacgatacacagtatggtttggctggtgctgtaatttc 326
|||||||| || ||||| || |||||| | ||||| ||||| |||||
Sbjct: 1239 agaacttgcaaatgatactcactatggtctagctggcgctgtgatttc 1286
Score = 75.8 bits (38), Expect = 3e-011
Identities = 98/118 (83%)
Strand = Plus / Plus
Query: 386 taaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggat 445
|||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |
Sbjct: 1346 taaattgctcgcaaccatgctttgttcaagctccatggggagggaacaagcggagtggtt 1405
Query: 446 ttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaagtcac 503
|||| || ||||| ||| | ||||| | ||||||||| ||||||| |||||||||||
Sbjct: 1406 ttggccgggagctaggacagtggggcctcgataactacttgagcgtgaagcaagtcac 1463
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 19 gatccacttgaagagggttgcaggcttgggccagttgttagtgaaggacagtat 72
|||||||| ||||| ||||||||||| ||| |||| ||||||||||| ||||||
Sbjct: 979 gatccactagaagaaggttgcaggctggggtcagtcgttagtgaagggcagtat 1032
>dbj|AB001348.1| Oryza sativa (japonica cultivar-group) gene for betaine aldehyde
dehydrogenase, complete cds
Length = 4428
Score = 75.8 bits (38), Expect = 3e-011
Identities = 86/102 (84%)
Strand = Plus / Plus
Query: 159 ggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctggag 218
||||||||||||||| || |||||||| || || | | |||||||||| |||| ||| |
Sbjct: 3663 ggggttctttattgagcctactattataacaaatgttagcacatcaatgcaaatttggcg 3722
Query: 219 ggaggaagtctttggtccagtcctgtgcgttaaagaatttag 260
|||||||||||||| || ||| | |||||||||||||||||
Sbjct: 3723 agaggaagtctttggaccggtcatctgcgttaaagaatttag 3764
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 19 gatccacttgaagagggttgcaggcttgggccagttgttagtgaagg 65
|||||||| ||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 3127 gatccactagaagaaggttgcaggctggggtcagtcgttagtgaagg 3173
Score = 50.1 bits (25), Expect = 0.002
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 386 taaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggat 445
|||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |
Sbjct: 4103 taaattgctcgcaaccatgctttgttcaagctccatggggagggaacaagcggagtggtt 4162
Query: 446 ttggacgtgagct 458
|||| || |||||
Sbjct: 4163 ttggccgggagct 4175
Score = 42.1 bits (21), Expect = 0.38
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 475 gataactacctgagcgtcaagcaagtcac 503
||||||||| ||||||| |||||||||||
Sbjct: 4345 gataactacttgagcgtgaagcaagtcac 4373
>gb|AACV01009925.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009925, whole
genome shotgun sequence
Length = 23673
Score = 75.8 bits (38), Expect = 3e-011
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 159 ggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctggag 218
||||||||||||||| || |||||||| || || | | |||||||||| |||| ||| |
Sbjct: 13648 ggggttctttattgagcctactattataacaaatgttagcacatcaatgcaaatttggcg 13589
Query: 219 ggaggaagtctttggtccagtcctgtgcgttaaagaatttag 260
|||||||||||||| || ||| | |||||||||||||||||
Sbjct: 13588 agaggaagtctttggaccggtcatctgcgttaaagaatttag 13547
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 19 gatccacttgaagagggttgcaggcttgggccagttgttagtgaagg 65
|||||||| ||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 14184 gatccactagaagaaggttgcaggctggggtcagtcgttagtgaagg 14138
Score = 50.1 bits (25), Expect = 0.002
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 386 taaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggat 445
|||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |
Sbjct: 13208 taaattgctcgcaaccatgctttgttcaagctccatggggagggaacaagcggagtggtt 13149
Query: 446 ttggacgtgagct 458
|||| || |||||
Sbjct: 13148 ttggccgggagct 13136
Score = 42.1 bits (21), Expect = 0.38
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 475 gataactacctgagcgtcaagcaagtcac 503
||||||||| ||||||| |||||||||||
Sbjct: 12966 gataactacttgagcgtgaagcaagtcac 12938
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 75.8 bits (38), Expect = 3e-011
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 159 ggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctggag 218
||||||||||||||| || |||||||| || || | | |||||||||| |||| ||| |
Sbjct: 750934 ggggttctttattgagcctactattataacaaatgttagcacatcaatgcaaatttggcg 750875
Query: 219 ggaggaagtctttggtccagtcctgtgcgttaaagaatttag 260
|||||||||||||| || ||| | |||||||||||||||||
Sbjct: 750874 agaggaagtctttggaccggtcatctgcgttaaagaatttag 750833
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 19 gatccacttgaagagggttgcaggcttgggccagttgttagtgaagg 65
|||||||| ||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 751470 gatccactagaagaaggttgcaggctggggtcagtcgttagtgaagg 751424
Score = 50.1 bits (25), Expect = 0.002
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 386 taaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggat 445
|||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |
Sbjct: 750494 taaattgctcgcaaccatgctttgttcaagctccatggggagggaacaagcggagtggtt 750435
Query: 446 ttggacgtgagct 458
|||| || |||||
Sbjct: 750434 ttggccgggagct 750422
Score = 42.1 bits (21), Expect = 0.38
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 475 gataactacctgagcgtcaagcaagtcac 503
||||||||| ||||||| |||||||||||
Sbjct: 750252 gataactacttgagcgtgaagcaagtcac 750224
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 75.8 bits (38), Expect = 3e-011
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 159 ggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctggag 218
||||||||||||||| || |||||||| || || | | |||||||||| |||| ||| |
Sbjct: 1039259 ggggttctttattgagcctactattataacaaatgttagcacatcaatgcaaatttggcg 1039200
Query: 219 ggaggaagtctttggtccagtcctgtgcgttaaagaatttag 260
|||||||||||||| || ||| | |||||||||||||||||
Sbjct: 1039199 agaggaagtctttggaccggtcatctgcgttaaagaatttag 1039158
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 19 gatccacttgaagagggttgcaggcttgggccagttgttagtgaagg 65
|||||||| ||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 1039795 gatccactagaagaaggttgcaggctggggtcagtcgttagtgaagg 1039749
Score = 50.1 bits (25), Expect = 0.002
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 386 taaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggat 445
|||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |
Sbjct: 1038819 taaattgctcgcaaccatgctttgttcaagctccatggggagggaacaagcggagtggtt 1038760
Query: 446 ttggacgtgagct 458
|||| || |||||
Sbjct: 1038759 ttggccgggagct 1038747
Score = 42.1 bits (21), Expect = 0.38
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 475 gataactacctgagcgtcaagcaagtcac 503
||||||||| ||||||| |||||||||||
Sbjct: 1038577 gataactacttgagcgtgaagcaagtcac 1038549
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 75.8 bits (38), Expect = 3e-011
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 159 ggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctggag 218
||||||||||||||| || |||||||| || || | | |||||||||| |||| ||| |
Sbjct: 20183358 ggggttctttattgagcctactattataacaaatgttagcacatcaatgcaaatttggcg 20183299
Query: 219 ggaggaagtctttggtccagtcctgtgcgttaaagaatttag 260
|||||||||||||| || ||| | |||||||||||||||||
Sbjct: 20183298 agaggaagtctttggaccggtcatctgcgttaaagaatttag 20183257
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 19 gatccacttgaagagggttgcaggcttgggccagttgttagtgaagg 65
|||||||| ||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 20183894 gatccactagaagaaggttgcaggctggggtcagtcgttagtgaagg 20183848
Score = 50.1 bits (25), Expect = 0.002
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 386 taaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggat 445
|||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |
Sbjct: 20182918 taaattgctcgcaaccatgctttgttcaagctccatggggagggaacaagcggagtggtt 20182859
Query: 446 ttggacgtgagct 458
|||| || |||||
Sbjct: 20182858 ttggccgggagct 20182846
Score = 42.1 bits (21), Expect = 0.38
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 475 gataactacctgagcgtcaagcaagtcac 503
||||||||| ||||||| |||||||||||
Sbjct: 20182676 gataactacttgagcgtgaagcaagtcac 20182648
>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14,
complete sequence
Length = 139418
Score = 75.8 bits (38), Expect = 3e-011
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 159 ggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctggag 218
||||||||||||||| || |||||||| || || | | |||||||||| |||| ||| |
Sbjct: 37402 ggggttctttattgagcctactattataacaaatgttagcacatcaatgcaaatttggcg 37343
Query: 219 ggaggaagtctttggtccagtcctgtgcgttaaagaatttag 260
|||||||||||||| || ||| | |||||||||||||||||
Sbjct: 37342 agaggaagtctttggaccggtcatctgcgttaaagaatttag 37301
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 19 gatccacttgaagagggttgcaggcttgggccagttgttagtgaagg 65
|||||||| ||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 37938 gatccactagaagaaggttgcaggctggggtcagtcgttagtgaagg 37892
Score = 50.1 bits (25), Expect = 0.002
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 386 taaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggat 445
|||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |
Sbjct: 36962 taaattgctcgcaaccatgctttgttcaagctccatggggagggaacaagcggagtggtt 36903
Query: 446 ttggacgtgagct 458
|||| || |||||
Sbjct: 36902 ttggccgggagct 36890
Score = 42.1 bits (21), Expect = 0.38
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 475 gataactacctgagcgtcaagcaagtcac 503
||||||||| ||||||| |||||||||||
Sbjct: 36720 gataactacttgagcgtgaagcaagtcac 36692
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 75.8 bits (38), Expect = 3e-011
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 159 ggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctggag 218
||||||||||||||| || |||||||| || || | | |||||||||| |||| ||| |
Sbjct: 23147210 ggggttctttattgagcctactattataacaaatgttagcacatcaatgcaaatttggcg 23147151
Query: 219 ggaggaagtctttggtccagtcctgtgcgttaaagaatttag 260
|||||||||||||| || ||| | |||||||||||||||||
Sbjct: 23147150 agaggaagtctttggaccggtcatctgcgttaaagaatttag 23147109
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 19 gatccacttgaagagggttgcaggcttgggccagttgttagtgaagg 65
|||||||| ||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 23147746 gatccactagaagaaggttgcaggctggggtcagtcgttagtgaagg 23147700
Score = 50.1 bits (25), Expect = 0.002
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 386 taaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgcagtggat 445
|||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |
Sbjct: 23146770 taaattgctcgcaaccatgctttgttcaagctccatggggagggaacaagcggagtggtt 23146711
Query: 446 ttggacgtgagct 458
|||| || |||||
Sbjct: 23146710 ttggccgggagct 23146698
Score = 42.1 bits (21), Expect = 0.38
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 475 gataactacctgagcgtcaagcaagtcac 503
||||||||| ||||||| |||||||||||
Sbjct: 23146528 gataactacttgagcgtgaagcaagtcac 23146500
>dbj|AG211653.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF5017_0_131_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF5017, genomic survey sequence
Length = 726
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 19 gatccacttgaagagggttgcaggcttgggccagttgttagtgaagg 65
|||||||| ||||| ||||||||||| ||| |||| |||||||||||
Sbjct: 239 gatccactagaagaaggttgcaggctggggtcagtcgttagtgaagg 285
>gb|AQ867077.1|AQ867077 nbeb0029D22f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0029D22f, DNA sequence
Length = 491
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 taaaaagttcatatcgaatgc 101
|||||||||||||||||||||
Sbjct: 61 taaaaagttcatatcgaatgc 81
>dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0678G09
Length = 139220
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 taaaaagttcatatcgaatgc 101
|||||||||||||||||||||
Sbjct: 78205 taaaaagttcatatcgaatgc 78225
>gb|AACV01002092.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002092, whole
genome shotgun sequence
Length = 25972
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 342 ttgccagaggttatctgagga 362
|||||||||||||||||||||
Sbjct: 7812 ttgccagaggttatctgagga 7832
>gb|AACV01016412.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016412, whole
genome shotgun sequence
Length = 12784
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 81 taaaaagttcatatcgaatgc 101
|||||||||||||||||||||
Sbjct: 3677 taaaaagttcatatcgaatgc 3657
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 342 ttgccagaggttatctgagga 362
|||||||||||||||||||||
Sbjct: 27732377 ttgccagaggttatctgagga 27732397
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 342 ttgccagaggttatctgagga 362
|||||||||||||||||||||
Sbjct: 2179760 ttgccagaggttatctgagga 2179780
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0007F06
Length = 150817
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 342 ttgccagaggttatctgagga 362
|||||||||||||||||||||
Sbjct: 119001 ttgccagaggttatctgagga 119021
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485G01
Length = 167203
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 342 ttgccagaggttatctgagga 362
|||||||||||||||||||||
Sbjct: 60273 ttgccagaggttatctgagga 60293
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 taaaaagttcatatcgaatgc 101
|||||||||||||||||||||
Sbjct: 7982310 taaaaagttcatatcgaatgc 7982330
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 taaaaagttcatatcgaatgc 101
|||||||||||||||||||||
Sbjct: 5883724 taaaaagttcatatcgaatgc 5883744
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 342 ttgccagaggttatctgagga 362
|||||||||||||||||||||
Sbjct: 2119604 ttgccagaggttatctgagga 2119624
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 taaaaagttcatatcgaatgc 101
|||||||||||||||||||||
Sbjct: 19283163 taaaaagttcatatcgaatgc 19283183
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 342 ttgccagaggttatctgagga 362
|||||||||||||||||||||
Sbjct: 27321325 ttgccagaggttatctgagga 27321345
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 342 ttgccagaggttatctgagga 362
|||||||||||||||||||||
Sbjct: 27651707 ttgccagaggttatctgagga 27651727
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 taaaaagttcatatcgaatgc 101
|||||||||||||||||||||
Sbjct: 20369305 taaaaagttcatatcgaatgc 20369325
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 841,375
Number of Sequences: 438736
Number of extensions: 841375
Number of successful extensions: 3788
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3543
Number of HSP's gapped (non-prelim): 233
length of query: 672
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 651
effective length of database: 2,791,206,460
effective search space: 1817075405460
effective search space used: 1817075405460
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)