BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204317.2.1
(607 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK060988.1| Oryza sativa (japonica cultivar-group) cDNA... 240 7e-061
dbj|AK069177.1| Oryza sativa (japonica cultivar-group) cDNA... 240 7e-061
ref|NM_193731.1| Oryza sativa (japonica cultivar-group), p... 240 7e-061
gb|AACV01001283.1| Oryza sativa (japonica cultivar-group) c... 170 6e-040
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 170 6e-040
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 170 6e-040
dbj|AP003435.2| Oryza sativa (japonica cultivar-group) geno... 170 6e-040
dbj|AP003217.3| Oryza sativa (japonica cultivar-group) geno... 170 6e-040
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 170 6e-040
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 170 6e-040
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 170 6e-040
dbj|AG214350.1| Oryza sativa (japonica cultivar-group) DNA,... 80 2e-012
gb|CB647043.1|CB647043 OSJNEb09M19.r OSJNEb Oryza sativa (j... 80 2e-012
gb|CB660688.1|CB660688 OSJNEd02K23.r OSJNEd Oryza sativa (j... 80 2e-012
gb|CB661845.1|CB661845 OSJNEd05D15.r OSJNEd Oryza sativa (j... 80 2e-012
gb|CF276028.1|CF276028 14ETL--01-A08.g1 Rice etiolated leaf... 80 2e-012
dbj|AP003821.1| Oryza sativa (japonica cultivar-group) chro... 80 2e-012
dbj|AK068499.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
gb|AACV01016950.1| Oryza sativa (japonica cultivar-group) c... 80 2e-012
dbj|AP005182.5| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
dbj|AP005184.5| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 80 2e-012
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
gb|CB670853.1|CB670853 OSJNEe04C10.r OSJNEe Oryza sativa (j... 74 1e-010
gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbar... 68 6e-009
gb|AACV01006514.1| Oryza sativa (japonica cultivar-group) c... 68 6e-009
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 68 6e-009
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 68 6e-009
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 68 6e-009
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 68 6e-009
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 68 6e-009
gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3... 64 9e-008
gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3... 64 9e-008
gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (ja... 64 9e-008
gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (j... 64 9e-008
gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering s... 64 9e-008
gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (jap... 64 9e-008
gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sati... 64 9e-008
gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA ... 64 9e-008
gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (j... 64 9e-008
gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (j... 64 9e-008
gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (j... 64 9e-008
gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (j... 64 9e-008
gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (j... 64 9e-008
gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (j... 64 9e-008
gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (j... 64 9e-008
gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda ph... 64 9e-008
gb|CV731446.1|CV731446 FLO--05-H19.g1 Rice flower lambda ph... 64 9e-008
gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, co... 64 9e-008
dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA... 64 9e-008
dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA... 64 9e-008
dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA... 64 9e-008
gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 ... 64 9e-008
dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA... 64 9e-008
gb|AACV01007733.1| Oryza sativa (japonica cultivar-group) c... 64 9e-008
ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA 64 9e-008
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 64 9e-008
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 64 9e-008
gb|AC091670.7| Oryza sativa (japonica cultivar-group) chrom... 64 9e-008
gb|AU033196.1|AU033196 AU033196 Rice shoot Oryza sativa (ja... 58 6e-006
gb|AU066086.2|AU066086 AU066086 Rice shoot Oryza sativa (ja... 58 6e-006
gb|AU031958.1|AU031958 AU031958 Rice root Oryza sativa (jap... 56 2e-005
gb|AU097647.1|AU097647 AU097647 Rice shoot Oryza sativa (ja... 56 2e-005
gb|AU174381.1|AU174381 AU174381 Rice shoot Oryza sativa (ja... 56 2e-005
gb|CB668192.1|CB668192 OSJNEd15O19.r OSJNEd Oryza sativa (j... 56 2e-005
gb|AU092227.1|AU092227 AU092227 Rice callus Oryza sativa (j... 50 0.001
dbj|AG214794.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.006
gb|C98907.1|C98907 C98907 Rice panicle at flowering stage O... 48 0.006
gb|C98908.1|C98908 C98908 Rice panicle at flowering stage O... 48 0.006
gb|AACV01002847.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|NM_190276.1| Oryza sativa (japonica cultivar-group), p... 48 0.006
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 48 0.006
dbj|AP003418.2| Oryza sativa (japonica cultivar-group) geno... 48 0.006
dbj|AP003349.4| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AK104707.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.022
gb|CF280094.1|CF280094 14ETL--06-K04.g1 Rice etiolated leaf... 44 0.086
gb|AY056828.1| Oryza sativa beta-glucosidase isozyme 2 prec... 44 0.086
gb|AC138008.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.086
dbj|AK061340.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.086
dbj|AK066710.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.086
gb|AACV01020307.1| Oryza sativa (japonica cultivar-group) c... 44 0.086
gb|AC108758.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.086
gb|AC108762.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.086
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.086
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.086
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.086
>dbj|AK060988.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C08, full
insert sequence
Length = 1113
Score = 240 bits (121), Expect = 7e-061
Identities = 322/389 (82%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||||| | || ||| |||||||| || |||||
Sbjct: 987 tccctgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtac 928
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|| |||||||||| ||||||||||| || |||||||||||||| || |||| ||||||
Sbjct: 927 accaggccgaacctcgacgtgtacccgagtttccactcgaagttatccagcagggaccag 868
Query: 320 gcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||||||| || | ||||||||||||| ||||||||||| ||||||||| || || ||||
Sbjct: 867 gcgaagtagcctatgcagttggcgccgtcgtcgatcgcctccttcagcttggtgatgtag 808
Query: 380 ctccggtagtaggccaccctcgccgcgtcgcgcacgccctgggccaccgtgacgttgccc 439
|||| ||||||||| ||||||| | ||| |||| ||||| || | || || |||||
Sbjct: 807 ctcctgtagtaggcgaccctcgtggtgtcatgcaccccctgagcaatggtcacattgcca 748
Query: 440 gggtcgtccataccgttctctgacaggagcatcgtggggttgccgtacttctccttgacg 499
|| || ||||| || || || || || | ||| |||||||| || ||||||||||||||
Sbjct: 747 ggatcatccatgccattttcagatagaaacattgtggggttaccatacttctccttgaca 688
Query: 500 taggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgccctt 559
|||||||| |||||||||| ||||| || || ||||| |||||||| || |||||||||
Sbjct: 687 taggtgacagctttgtacaaaccccacggtacaatgtaaagccagtcagaattcgccctt 628
Query: 560 ggtccaatcggcacaccgtcgcgttcata 588
|||||||| ||||| || |||||||||||
Sbjct: 627 ggtccaattggcacgccatcgcgttcata 599
>dbj|AK069177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006J10, full
insert sequence
Length = 1833
Score = 240 bits (121), Expect = 7e-061
Identities = 322/389 (82%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||||| | || ||| |||||||| || |||||
Sbjct: 1688 tccctgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtac 1629
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|| |||||||||| ||||||||||| || |||||||||||||| || |||| ||||||
Sbjct: 1628 accaggccgaacctcgacgtgtacccgagtttccactcgaagttatccagcagggaccag 1569
Query: 320 gcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||||||| || | ||||||||||||| ||||||||||| ||||||||| || || ||||
Sbjct: 1568 gcgaagtagcctatgcagttggcgccgtcgtcgatcgcctccttcagcttggtgatgtag 1509
Query: 380 ctccggtagtaggccaccctcgccgcgtcgcgcacgccctgggccaccgtgacgttgccc 439
|||| ||||||||| ||||||| | ||| |||| ||||| || | || || |||||
Sbjct: 1508 ctcctgtagtaggcgaccctcgtggtgtcatgcaccccctgagcaatggtcacattgcca 1449
Query: 440 gggtcgtccataccgttctctgacaggagcatcgtggggttgccgtacttctccttgacg 499
|| || ||||| || || || || || | ||| |||||||| || ||||||||||||||
Sbjct: 1448 ggatcatccatgccattttcagatagaaacattgtggggttaccatacttctccttgaca 1389
Query: 500 taggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgccctt 559
|||||||| |||||||||| ||||| || || ||||| |||||||| || |||||||||
Sbjct: 1388 taggtgacagctttgtacaaaccccacggtacaatgtaaagccagtcagaattcgccctt 1329
Query: 560 ggtccaatcggcacaccgtcgcgttcata 588
|||||||| ||||| || |||||||||||
Sbjct: 1328 ggtccaattggcacgccatcgcgttcata 1300
>ref|NM_193731.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1389
Score = 240 bits (121), Expect = 7e-061
Identities = 322/389 (82%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||||| | || ||| |||||||| || |||||
Sbjct: 1367 tccctgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtac 1308
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|| |||||||||| ||||||||||| || |||||||||||||| || |||| ||||||
Sbjct: 1307 accaggccgaacctcgacgtgtacccgagtttccactcgaagttatccagcagggaccag 1248
Query: 320 gcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||||||| || | ||||||||||||| ||||||||||| ||||||||| || || ||||
Sbjct: 1247 gcgaagtagcctatgcagttggcgccgtcgtcgatcgcctccttcagcttggtgatgtag 1188
Query: 380 ctccggtagtaggccaccctcgccgcgtcgcgcacgccctgggccaccgtgacgttgccc 439
|||| ||||||||| ||||||| | ||| |||| ||||| || | || || |||||
Sbjct: 1187 ctcctgtagtaggcgaccctcgtggtgtcatgcaccccctgagcaatggtcacattgcca 1128
Query: 440 gggtcgtccataccgttctctgacaggagcatcgtggggttgccgtacttctccttgacg 499
|| || ||||| || || || || || | ||| |||||||| || ||||||||||||||
Sbjct: 1127 ggatcatccatgccattttcagatagaaacattgtggggttaccatacttctccttgaca 1068
Query: 500 taggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgccctt 559
|||||||| |||||||||| ||||| || || ||||| |||||||| || |||||||||
Sbjct: 1067 taggtgacagctttgtacaaaccccacggtacaatgtaaagccagtcagaattcgccctt 1008
Query: 560 ggtccaatcggcacaccgtcgcgttcata 588
|||||||| ||||| || |||||||||||
Sbjct: 1007 ggtccaattggcacgccatcgcgttcata 979
>gb|AACV01001283.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001283, whole
genome shotgun sequence
Length = 12034
Score = 170 bits (86), Expect = 6e-040
Identities = 173/202 (85%)
Strand = Plus / Plus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||||| | || ||| |||||||| || |||||
Sbjct: 4025 tccctgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtac 4084
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|| |||||||||| ||||||||||| || |||||||||||||| || |||| ||||||
Sbjct: 4085 accaggccgaacctcgacgtgtacccgagtttccactcgaagttatccagcagggaccag 4144
Query: 320 gcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||||||| || | ||||||||||||| ||||||||||| ||||||||| || || ||||
Sbjct: 4145 gcgaagtagcctatgcagttggcgccgtcgtcgatcgcctccttcagcttggtgatgtag 4204
Query: 380 ctccggtagtaggccaccctcg 401
|||| ||||||||| |||||||
Sbjct: 4205 ctcctgtagtaggcgaccctcg 4226
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 473 gtggggttgccgtacttctccttgacgtaggtgacggctttgtacagtccccaaggcacg 532
|||||||| || |||||||||||||| |||||||| |||||||||| ||||| || ||
Sbjct: 4388 gtggggttaccatacttctccttgacataggtgacagctttgtacaaaccccacggtaca 4447
Query: 533 atgtagagccagtctgagttcgcc 556
||||| |||||||| || ||||||
Sbjct: 4448 atgtaaagccagtcagaattcgcc 4471
Score = 42.1 bits (21), Expect = 0.34
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 555 cccttggtccaatcggcacaccgtcgcgttcat 587
||||||||||||| ||||| || ||||||||||
Sbjct: 4566 cccttggtccaattggcacgccatcgcgttcat 4598
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 170 bits (86), Expect = 6e-040
Identities = 173/202 (85%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||||| | || ||| |||||||| || |||||
Sbjct: 17839500 tccctgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtac 17839441
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|| |||||||||| ||||||||||| || |||||||||||||| || |||| ||||||
Sbjct: 17839440 accaggccgaacctcgacgtgtacccgagtttccactcgaagttatccagcagggaccag 17839381
Query: 320 gcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||||||| || | ||||||||||||| ||||||||||| ||||||||| || || ||||
Sbjct: 17839380 gcgaagtagcctatgcagttggcgccgtcgtcgatcgcctccttcagcttggtgatgtag 17839321
Query: 380 ctccggtagtaggccaccctcg 401
|||| ||||||||| |||||||
Sbjct: 17839320 ctcctgtagtaggcgaccctcg 17839299
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 473 gtggggttgccgtacttctccttgacgtaggtgacggctttgtacagtccccaaggcacg 532
|||||||| || |||||||||||||| |||||||| |||||||||| ||||| || ||
Sbjct: 17839137 gtggggttaccatacttctccttgacataggtgacagctttgtacaaaccccacggtaca 17839078
Query: 533 atgtagagccagtctgagttcgcc 556
||||| |||||||| || ||||||
Sbjct: 17839077 atgtaaagccagtcagaattcgcc 17839054
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || |||||||| ||||||||
Sbjct: 39083565 ccactcgaagttgtccaggaacgaccatgcgaagta 39083530
Score = 42.1 bits (21), Expect = 0.34
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 555 cccttggtccaatcggcacaccgtcgcgttcat 587
||||||||||||| ||||| || ||||||||||
Sbjct: 17838959 cccttggtccaattggcacgccatcgcgttcat 17838927
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 170 bits (86), Expect = 6e-040
Identities = 173/202 (85%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||||| | || ||| |||||||| || |||||
Sbjct: 757732 tccctgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtac 757673
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|| |||||||||| ||||||||||| || |||||||||||||| || |||| ||||||
Sbjct: 757672 accaggccgaacctcgacgtgtacccgagtttccactcgaagttatccagcagggaccag 757613
Query: 320 gcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||||||| || | ||||||||||||| ||||||||||| ||||||||| || || ||||
Sbjct: 757612 gcgaagtagcctatgcagttggcgccgtcgtcgatcgcctccttcagcttggtgatgtag 757553
Query: 380 ctccggtagtaggccaccctcg 401
|||| ||||||||| |||||||
Sbjct: 757552 ctcctgtagtaggcgaccctcg 757531
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 473 gtggggttgccgtacttctccttgacgtaggtgacggctttgtacagtccccaaggcacg 532
|||||||| || |||||||||||||| |||||||| |||||||||| ||||| || ||
Sbjct: 757369 gtggggttaccatacttctccttgacataggtgacagctttgtacaaaccccacggtaca 757310
Query: 533 atgtagagccagtctgagttcgcc 556
||||| |||||||| || ||||||
Sbjct: 757309 atgtaaagccagtcagaattcgcc 757286
Score = 42.1 bits (21), Expect = 0.34
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 555 cccttggtccaatcggcacaccgtcgcgttcat 587
||||||||||||| ||||| || ||||||||||
Sbjct: 757191 cccttggtccaattggcacgccatcgcgttcat 757159
>dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0455H03
Length = 175947
Score = 170 bits (86), Expect = 6e-040
Identities = 173/202 (85%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||||| | || ||| |||||||| || |||||
Sbjct: 7905 tccctgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtac 7846
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|| |||||||||| ||||||||||| || |||||||||||||| || |||| ||||||
Sbjct: 7845 accaggccgaacctcgacgtgtacccgagtttccactcgaagttatccagcagggaccag 7786
Query: 320 gcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||||||| || | ||||||||||||| ||||||||||| ||||||||| || || ||||
Sbjct: 7785 gcgaagtagcctatgcagttggcgccgtcgtcgatcgcctccttcagcttggtgatgtag 7726
Query: 380 ctccggtagtaggccaccctcg 401
|||| ||||||||| |||||||
Sbjct: 7725 ctcctgtagtaggcgaccctcg 7704
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 473 gtggggttgccgtacttctccttgacgtaggtgacggctttgtacagtccccaaggcacg 532
|||||||| || |||||||||||||| |||||||| |||||||||| ||||| || ||
Sbjct: 7542 gtggggttaccatacttctccttgacataggtgacagctttgtacaaaccccacggtaca 7483
Query: 533 atgtagagccagtctgagttcgcc 556
||||| |||||||| || ||||||
Sbjct: 7482 atgtaaagccagtcagaattcgcc 7459
Score = 42.1 bits (21), Expect = 0.34
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 555 cccttggtccaatcggcacaccgtcgcgttcat 587
||||||||||||| ||||| || ||||||||||
Sbjct: 7364 cccttggtccaattggcacgccatcgcgttcat 7332
>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0094H06
Length = 147245
Score = 170 bits (86), Expect = 6e-040
Identities = 173/202 (85%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||||| | || ||| |||||||| || |||||
Sbjct: 142318 tccctgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtac 142259
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|| |||||||||| ||||||||||| || |||||||||||||| || |||| ||||||
Sbjct: 142258 accaggccgaacctcgacgtgtacccgagtttccactcgaagttatccagcagggaccag 142199
Query: 320 gcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||||||| || | ||||||||||||| ||||||||||| ||||||||| || || ||||
Sbjct: 142198 gcgaagtagcctatgcagttggcgccgtcgtcgatcgcctccttcagcttggtgatgtag 142139
Query: 380 ctccggtagtaggccaccctcg 401
|||| ||||||||| |||||||
Sbjct: 142138 ctcctgtagtaggcgaccctcg 142117
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 473 gtggggttgccgtacttctccttgacgtaggtgacggctttgtacagtccccaaggcacg 532
|||||||| || |||||||||||||| |||||||| |||||||||| ||||| || ||
Sbjct: 141955 gtggggttaccatacttctccttgacataggtgacagctttgtacaaaccccacggtaca 141896
Query: 533 atgtagagccagtctgagttcgcc 556
||||| |||||||| || ||||||
Sbjct: 141895 atgtaaagccagtcagaattcgcc 141872
Score = 42.1 bits (21), Expect = 0.34
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 555 cccttggtccaatcggcacaccgtcgcgttcat 587
||||||||||||| ||||| || ||||||||||
Sbjct: 141777 cccttggtccaattggcacgccatcgcgttcat 141745
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003
genomic scaffold, whole genome shotgun sequence
Length = 8539496
Score = 170 bits (86), Expect = 6e-040
Identities = 173/202 (85%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||||| | || ||| |||||||| || |||||
Sbjct: 760378 tccctgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtac 760319
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|| |||||||||| ||||||||||| || |||||||||||||| || |||| ||||||
Sbjct: 760318 accaggccgaacctcgacgtgtacccgagtttccactcgaagttatccagcagggaccag 760259
Query: 320 gcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||||||| || | ||||||||||||| ||||||||||| ||||||||| || || ||||
Sbjct: 760258 gcgaagtagcctatgcagttggcgccgtcgtcgatcgcctccttcagcttggtgatgtag 760199
Query: 380 ctccggtagtaggccaccctcg 401
|||| ||||||||| |||||||
Sbjct: 760198 ctcctgtagtaggcgaccctcg 760177
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 473 gtggggttgccgtacttctccttgacgtaggtgacggctttgtacagtccccaaggcacg 532
|||||||| || |||||||||||||| |||||||| |||||||||| ||||| || ||
Sbjct: 760015 gtggggttaccatacttctccttgacataggtgacagctttgtacaaaccccacggtaca 759956
Query: 533 atgtagagccagtctgagttcgcc 556
||||| |||||||| || ||||||
Sbjct: 759955 atgtaaagccagtcagaattcgcc 759932
Score = 42.1 bits (21), Expect = 0.34
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 555 cccttggtccaatcggcacaccgtcgcgttcat 587
||||||||||||| ||||| || ||||||||||
Sbjct: 759837 cccttggtccaattggcacgccatcgcgttcat 759805
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 170 bits (86), Expect = 6e-040
Identities = 173/202 (85%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||||| | || ||| |||||||| || |||||
Sbjct: 17385501 tccctgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtac 17385442
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|| |||||||||| ||||||||||| || |||||||||||||| || |||| ||||||
Sbjct: 17385441 accaggccgaacctcgacgtgtacccgagtttccactcgaagttatccagcagggaccag 17385382
Query: 320 gcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||||||| || | ||||||||||||| ||||||||||| ||||||||| || || ||||
Sbjct: 17385381 gcgaagtagcctatgcagttggcgccgtcgtcgatcgcctccttcagcttggtgatgtag 17385322
Query: 380 ctccggtagtaggccaccctcg 401
|||| ||||||||| |||||||
Sbjct: 17385321 ctcctgtagtaggcgaccctcg 17385300
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 473 gtggggttgccgtacttctccttgacgtaggtgacggctttgtacagtccccaaggcacg 532
|||||||| || |||||||||||||| |||||||| |||||||||| ||||| || ||
Sbjct: 17385138 gtggggttaccatacttctccttgacataggtgacagctttgtacaaaccccacggtaca 17385079
Query: 533 atgtagagccagtctgagttcgcc 556
||||| |||||||| || ||||||
Sbjct: 17385078 atgtaaagccagtcagaattcgcc 17385055
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || |||||||| ||||||||
Sbjct: 38451185 ccactcgaagttgtccaggaacgaccatgcgaagta 38451150
Score = 42.1 bits (21), Expect = 0.34
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 555 cccttggtccaatcggcacaccgtcgcgttcat 587
||||||||||||| ||||| || ||||||||||
Sbjct: 17384960 cccttggtccaattggcacgccatcgcgttcat 17384928
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 170 bits (86), Expect = 6e-040
Identities = 173/202 (85%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||||| | || ||| |||||||| || |||||
Sbjct: 17760783 tccctgaaccagtaggccgacatcttggggtacctcctgagggtcctgaaatccacgtac 17760724
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|| |||||||||| ||||||||||| || |||||||||||||| || |||| ||||||
Sbjct: 17760723 accaggccgaacctcgacgtgtacccgagtttccactcgaagttatccagcagggaccag 17760664
Query: 320 gcgaagtatcccacgcagttggcgccgccgtcgatcgccgccttcagctcggcgacgtag 379
|||||||| || | ||||||||||||| ||||||||||| ||||||||| || || ||||
Sbjct: 17760663 gcgaagtagcctatgcagttggcgccgtcgtcgatcgcctccttcagcttggtgatgtag 17760604
Query: 380 ctccggtagtaggccaccctcg 401
|||| ||||||||| |||||||
Sbjct: 17760603 ctcctgtagtaggcgaccctcg 17760582
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 473 gtggggttgccgtacttctccttgacgtaggtgacggctttgtacagtccccaaggcacg 532
|||||||| || |||||||||||||| |||||||| |||||||||| ||||| || ||
Sbjct: 17760420 gtggggttaccatacttctccttgacataggtgacagctttgtacaaaccccacggtaca 17760361
Query: 533 atgtagagccagtctgagttcgcc 556
||||| |||||||| || ||||||
Sbjct: 17760360 atgtaaagccagtcagaattcgcc 17760337
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
||||||||||||||| || |||||||| ||||||||
Sbjct: 39002895 ccactcgaagttgtccaggaacgaccatgcgaagta 39002860
Score = 42.1 bits (21), Expect = 0.34
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 555 cccttggtccaatcggcacaccgtcgcgttcat 587
||||||||||||| ||||| || ||||||||||
Sbjct: 17760242 cccttggtccaattggcacgccatcgcgttcat 17760210
>dbj|AG214350.1| Oryza sativa (japonica cultivar-group) DNA, clone:T14065T, 3'
flanking sequence of Tos17 insertion in rice strain
NE3027, genomic survey sequence
Length = 685
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 190 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 131
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 130 aagttgtcaagcaatgaccaagcaaagtatcc 99
>gb|CB647043.1|CB647043 OSJNEb09M19.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09M19 3', mRNA sequence
Length = 713
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 335 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 394
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 395 aagttgtcaagcaatgaccaagcaaagtatcc 426
>gb|CB660688.1|CB660688 OSJNEd02K23.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd02K23 3', mRNA sequence
Length = 814
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 354 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 413
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 414 aagttgtcaagcaatgaccaagcaaagtatcc 445
>gb|CB661845.1|CB661845 OSJNEd05D15.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd05D15 3', mRNA sequence
Length = 748
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 346 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 405
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 406 aagttgtcaagcaatgaccaagcaaagtatcc 437
>gb|CF276028.1|CF276028 14ETL--01-A08.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-A08, mRNA sequence
Length = 506
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 368 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 427
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 428 aagttgtcaagcaatgaccaagcaaagtatcc 459
>dbj|AP003821.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ1308_C12,
*** SEQUENCING IN PROGRESS ***
Length = 99427
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 33816 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 33875
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 33876 aagttgtcaagcaatgaccaagcaaagtatcc 33907
>dbj|AK068499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155M12, full
insert sequence
Length = 1897
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 1567 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 1508
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 1507 aagttgtcaagcaatgaccaagcaaagtatcc 1476
>gb|AACV01016950.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016950, whole
genome shotgun sequence
Length = 44918
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 7171 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 7112
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 7111 aagttgtcaagcaatgaccaagcaaagtatcc 7080
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0018C07
Length = 141707
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 128655 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 128596
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 128595 aagttgtcaagcaatgaccaagcaaagtatcc 128564
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0047B07
Length = 157797
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 21677 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 21618
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 21617 aagttgtcaagcaatgaccaagcaaagtatcc 21586
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 15177689 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 15177630
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 15177629 aagttgtcaagcaatgaccaagcaaagtatcc 15177598
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 13116563 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 13116504
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 13116503 aagttgtcaagcaatgaccaagcaaagtatcc 13116472
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 26516002 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 26515943
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 26515942 aagttgtcaagcaatgaccaagcaaagtatcc 26515911
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 239 agcgtcctgaagtcgacgtagacgaggccgaaccgggacgtgtaccccagcttccactcg 298
|||||| || |||| |||||||||| ||| || ||||| |||||||| ||| ||||||||
Sbjct: 27564684 agcgtcttgtagtccacgtagacgatgccaaaacgggaagtgtacccgagcctccactcg 27564625
Query: 299 aagttgtcgagcaacgaccaggcgaagtatcc 330
|||||||| ||||| ||||| || ||||||||
Sbjct: 27564624 aagttgtcaagcaatgaccaagcaaagtatcc 27564593
>gb|CB670853.1|CB670853 OSJNEe04C10.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04C10 3', mRNA sequence
Length = 753
Score = 73.8 bits (37), Expect = 1e-010
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 254 acgtagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaac 313
|||||||||| ||| || ||||| |||||||| ||| |||||||||||||||| |||||
Sbjct: 308 acgtagacgatgccaaaacgggaagtgtacccgagcctccactcgaagttgtcaagcaat 367
Query: 314 gaccaggcgaagtatcc 330
||||| || ||||||||
Sbjct: 368 gaccaagcaaagtatcc 384
>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBb0093J20, from chromosome 3, complete sequence
Length = 148635
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 257 tagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgac 316
||||||| ||||| ||||| |||||||| ||| ||||||||||||||||||||| |||
Sbjct: 82737 tagacgataccgaaacgggatgtgtacccgagcctccactcgaagttgtcgagcagtgac 82796
Query: 317 caggcgaagtatcc 330
|| || ||||||||
Sbjct: 82797 caagcaaagtatcc 82810
>gb|AACV01006514.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006514, whole
genome shotgun sequence
Length = 14109
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 257 tagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgac 316
||||||| ||||| ||||| |||||||| ||| ||||||||||||||||||||| |||
Sbjct: 3682 tagacgataccgaaacgggatgtgtacccgagcctccactcgaagttgtcgagcagtgac 3741
Query: 317 caggcgaagtatcc 330
|| || ||||||||
Sbjct: 3742 caagcaaagtatcc 3755
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 257 tagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgac 316
||||||| ||||| ||||| |||||||| ||| ||||||||||||||||||||| |||
Sbjct: 3035902 tagacgataccgaaacgggatgtgtacccgagcctccactcgaagttgtcgagcagtgac 3035961
Query: 317 caggcgaagtatcc 330
|| || ||||||||
Sbjct: 3035962 caagcaaagtatcc 3035975
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 257 tagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgac 316
||||||| ||||| ||||| |||||||| ||| ||||||||||||||||||||| |||
Sbjct: 11822749 tagacgataccgaaacgggatgtgtacccgagcctccactcgaagttgtcgagcagtgac 11822808
Query: 317 caggcgaagtatcc 330
|| || ||||||||
Sbjct: 11822809 caagcaaagtatcc 11822822
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 257 tagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgac 316
||||||| ||||| ||||| |||||||| ||| ||||||||||||||||||||| |||
Sbjct: 12015111 tagacgataccgaaacgggatgtgtacccgagcctccactcgaagttgtcgagcagtgac 12015170
Query: 317 caggcgaagtatcc 330
|| || ||||||||
Sbjct: 12015171 caagcaaagtatcc 12015184
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 28994274 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 28994333
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 28994334 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 28994393
Query: 320 gcgaagta 327
||||||||
Sbjct: 28994394 gcgaagta 28994401
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 257 tagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgac 316
||||||| ||||| ||||| |||||||| ||| ||||||||||||||||||||| |||
Sbjct: 11690405 tagacgataccgaaacgggatgtgtacccgagcctccactcgaagttgtcgagcagtgac 11690464
Query: 317 caggcgaagtatcc 330
|| || ||||||||
Sbjct: 11690465 caagcaaagtatcc 11690478
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 28037063 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 28037122
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 28037123 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 28037182
Query: 320 gcgaagta 327
||||||||
Sbjct: 28037183 gcgaagta 28037190
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 67.9 bits (34), Expect = 6e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 257 tagacgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgac 316
||||||| ||||| ||||| |||||||| ||| ||||||||||||||||||||| |||
Sbjct: 11693642 tagacgataccgaaacgggatgtgtacccgagcctccactcgaagttgtcgagcagtgac 11693701
Query: 317 caggcgaagtatcc 330
|| || ||||||||
Sbjct: 11693702 caagcaaagtatcc 11693715
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 27945739 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 27945798
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 27945799 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 27945858
Query: 320 gcgaagta 327
||||||||
Sbjct: 27945859 gcgaagta 27945866
>gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31058_1Z, mRNA sequence
Length = 394
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 215 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 156
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 155 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 96
Query: 320 gcgaagta 327
||||||||
Sbjct: 95 gcgaagta 88
>gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31217_1Z, mRNA sequence
Length = 356
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 177 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 118
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 117 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 58
Query: 320 gcgaagta 327
||||||||
Sbjct: 57 gcgaagta 50
>gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S3977_2Z, mRNA sequence
Length = 493
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 307 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 248
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 247 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 188
Query: 320 gcgaagta 327
||||||||
Sbjct: 187 gcgaagta 180
>gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11496, mRNA sequence
Length = 705
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 320 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 261
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 260 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 201
Query: 320 gcgaagta 327
||||||||
Sbjct: 200 gcgaagta 193
>gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1350, mRNA sequence
Length = 709
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 428 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 369
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 368 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 309
Query: 320 gcgaagta 327
||||||||
Sbjct: 308 gcgaagta 301
>gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3421, mRNA sequence
Length = 716
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 432 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 373
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 372 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 313
Query: 320 gcgaagta 327
||||||||
Sbjct: 312 gcgaagta 305
>gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S12223, mRNA sequence
Length = 372
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 188 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 129
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 128 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 69
Query: 320 gcgaagta 327
||||||||
Sbjct: 68 gcgaagta 61
>gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030043000_PLATE_A11_81_084.ab1 similar to
beta-glucosidase (EC 3.2.1.21), chloroplast - rice, mRNA
sequence
Length = 600
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 291 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 232
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 231 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 172
Query: 320 gcgaagta 327
||||||||
Sbjct: 171 gcgaagta 164
>gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03L22 3', mRNA sequence
Length = 813
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 266 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 325
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 326 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 385
Query: 320 gcgaagta 327
||||||||
Sbjct: 386 gcgaagta 393
>gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08C01 3', mRNA sequence
Length = 775
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 378 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 437
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 438 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 497
Query: 320 gcgaagta 327
||||||||
Sbjct: 498 gcgaagta 505
>gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05K05 3', mRNA sequence
Length = 837
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 353 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 412
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 413 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 472
Query: 320 gcgaagta 327
||||||||
Sbjct: 473 gcgaagta 480
>gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08N06 3', mRNA sequence
Length = 835
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 265 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 324
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 325 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 384
Query: 320 gcgaagta 327
||||||||
Sbjct: 385 gcgaagta 392
>gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08O07 3', mRNA sequence
Length = 806
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 265 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 324
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 325 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 384
Query: 320 gcgaagta 327
||||||||
Sbjct: 385 gcgaagta 392
>gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16B19 3', mRNA sequence
Length = 835
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 265 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 324
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 325 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 384
Query: 320 gcgaagta 327
||||||||
Sbjct: 385 gcgaagta 392
>gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10E15 3', mRNA sequence
Length = 828
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 258 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 317
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 318 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 377
Query: 320 gcgaagta 327
||||||||
Sbjct: 378 gcgaagta 385
>gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-H19,
mRNA sequence
Length = 423
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 246 tccctgaaccagtaggccgacgccttggggtggcgctcgagcgtgttgaagtcgacgtag 187
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|||| || ||| ||||||||| || | ||||||||||||||| || | ||||||
Sbjct: 186 acgataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggagagaccag 127
Query: 320 gcgaagta 327
||||||||
Sbjct: 126 gcgaagta 119
>gb|CV731446.1|CV731446 FLO--05-H19.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-H19,
mRNA sequence
Length = 383
Score = 63.9 bits (32), Expect = 9e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 200 tccctgaaccagtacgccgagctcttggggtagcgccggagcgtcctgaagtcgacgtag 259
|||||||||||||| ||||| | |||||||| |||| |||||| |||||||||||||
Sbjct: 178 tccctgaaccagtaggccgaccccttggggtggcgctcgagcgtgttgaagtcgacgtaa 237
Query: 260 acgaggccgaaccgggacgtgtaccccagcttccactcgaagttgtcgagcaacgaccag 319
|| | || ||| ||||||||| || | ||||||||||||||| || || ||||||
Sbjct: 238 acaataccaaacttggacgtgtaacctgacagccactcgaagttgtccaggaaagaccag 297
Query: 320 gcgaagta 327
||||||||
Sbjct: 298 gcgaagta 305
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 762,184
Number of Sequences: 438736
Number of extensions: 762184
Number of successful extensions: 17521
Number of sequences better than 0.5: 90
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16675
Number of HSP's gapped (non-prelim): 846
length of query: 607
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 586
effective length of database: 2,791,206,460
effective search space: 1635646985560
effective search space used: 1635646985560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)