BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203826.2.1
(594 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OS... 80 2e-012
gb|AACV01007462.1| Oryza sativa (japonica cultivar-group) c... 80 2e-012
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
gb|AU166149.1|AU166149 AU166149 Rice panicle shorter than 3... 64 9e-008
gb|AU029651.1|AU029651 AU029651 Rice panicle shorter than 3... 56 2e-005
ref|NT_107075.1| Oryza sativa (japonica cultivar-group) 44 0.085
gb|AACV01020389.1| Oryza sativa (japonica cultivar-group) c... 44 0.085
dbj|AP006173.3| Oryza sativa (japonica cultivar-group) geno... 44 0.085
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.085
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.085
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.085
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
chromosome 3 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 183327
Score = 79.8 bits (40), Expect = 2e-012
Identities = 136/168 (80%)
Strand = Plus / Minus
Query: 363 cgccactccgcctgcccggtacgccacacccgcattccatcctgcaggtatggcattgct 422
|||||||||||| | | ||||||||| || | ||||| ||||| |||||||| |||||
Sbjct: 81412 cgccactccgccgggctggtacgccatgccggggttccaccctgccggtatggcgttgct 81353
Query: 423 ggctatgagtacccggcctgagctgaacgtcaagcggagggggaacgggccctgaagagc 482
||| | | | | |||| ||||||||||||| ||||| || |||||||||||| || ||
Sbjct: 81352 ggcaacaaacatctggccggagctgaacgtcaggcggacggagaacgggccctgcagggc 81293
Query: 483 agagccagagtcgagcctccagattgcaccccacgaatgctgcatcgg 530
||||| |||| ||||||||| | ||| ||||| || |||||||||||
Sbjct: 81292 ggagccggagttgagcctccacactgcgccccatgactgctgcatcgg 81245
>gb|AACV01007462.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007462, whole
genome shotgun sequence
Length = 20053
Score = 79.8 bits (40), Expect = 2e-012
Identities = 136/168 (80%)
Strand = Plus / Minus
Query: 363 cgccactccgcctgcccggtacgccacacccgcattccatcctgcaggtatggcattgct 422
|||||||||||| | | ||||||||| || | ||||| ||||| |||||||| |||||
Sbjct: 7196 cgccactccgccgggctggtacgccatgccggggttccaccctgccggtatggcgttgct 7137
Query: 423 ggctatgagtacccggcctgagctgaacgtcaagcggagggggaacgggccctgaagagc 482
||| | | | | |||| ||||||||||||| ||||| || |||||||||||| || ||
Sbjct: 7136 ggcaacaaacatctggccggagctgaacgtcaggcggacggagaacgggccctgcagggc 7077
Query: 483 agagccagagtcgagcctccagattgcaccccacgaatgctgcatcgg 530
||||| |||| ||||||||| | ||| ||||| || |||||||||||
Sbjct: 7076 ggagccggagttgagcctccacactgcgccccatgactgctgcatcgg 7029
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 79.8 bits (40), Expect = 2e-012
Identities = 136/168 (80%)
Strand = Plus / Minus
Query: 363 cgccactccgcctgcccggtacgccacacccgcattccatcctgcaggtatggcattgct 422
|||||||||||| | | ||||||||| || | ||||| ||||| |||||||| |||||
Sbjct: 11209911 cgccactccgccgggctggtacgccatgccggggttccaccctgccggtatggcgttgct 11209852
Query: 423 ggctatgagtacccggcctgagctgaacgtcaagcggagggggaacgggccctgaagagc 482
||| | | | | |||| ||||||||||||| ||||| || |||||||||||| || ||
Sbjct: 11209851 ggcaacaaacatctggccggagctgaacgtcaggcggacggagaacgggccctgcagggc 11209792
Query: 483 agagccagagtcgagcctccagattgcaccccacgaatgctgcatcgg 530
||||| |||| ||||||||| | ||| ||||| || |||||||||||
Sbjct: 11209791 ggagccggagttgagcctccacactgcgccccatgactgctgcatcgg 11209744
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 79.8 bits (40), Expect = 2e-012
Identities = 136/168 (80%)
Strand = Plus / Minus
Query: 363 cgccactccgcctgcccggtacgccacacccgcattccatcctgcaggtatggcattgct 422
|||||||||||| | | ||||||||| || | ||||| ||||| |||||||| |||||
Sbjct: 25260618 cgccactccgccgggctggtacgccatgccggggttccaccctgccggtatggcgttgct 25260559
Query: 423 ggctatgagtacccggcctgagctgaacgtcaagcggagggggaacgggccctgaagagc 482
||| | | | | |||| ||||||||||||| ||||| || |||||||||||| || ||
Sbjct: 25260558 ggcaacaaacatctggccggagctgaacgtcaggcggacggagaacgggccctgcagggc 25260499
Query: 483 agagccagagtcgagcctccagattgcaccccacgaatgctgcatcgg 530
||||| |||| ||||||||| | ||| ||||| || |||||||||||
Sbjct: 25260498 ggagccggagttgagcctccacactgcgccccatgactgctgcatcgg 25260451
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 79.8 bits (40), Expect = 2e-012
Identities = 136/168 (80%)
Strand = Plus / Minus
Query: 363 cgccactccgcctgcccggtacgccacacccgcattccatcctgcaggtatggcattgct 422
|||||||||||| | | ||||||||| || | ||||| ||||| |||||||| |||||
Sbjct: 24702723 cgccactccgccgggctggtacgccatgccggggttccaccctgccggtatggcgttgct 24702664
Query: 423 ggctatgagtacccggcctgagctgaacgtcaagcggagggggaacgggccctgaagagc 482
||| | | | | |||| ||||||||||||| ||||| || |||||||||||| || ||
Sbjct: 24702663 ggcaacaaacatctggccggagctgaacgtcaggcggacggagaacgggccctgcagggc 24702604
Query: 483 agagccagagtcgagcctccagattgcaccccacgaatgctgcatcgg 530
||||| |||| ||||||||| | ||| ||||| || |||||||||||
Sbjct: 24702603 ggagccggagttgagcctccacactgcgccccatgactgctgcatcgg 24702556
>gb|AU166149.1|AU166149 AU166149 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31973, mRNA sequence
Length = 641
Score = 63.9 bits (32), Expect = 9e-008
Identities = 134/168 (79%)
Strand = Plus / Minus
Query: 363 cgccactccgcctgcccggtacgccacacccgcattccatcctgcaggtatggcattgct 422
|||||||||||| | | ||||||||| || | ||||| ||||| |||||||| |||||
Sbjct: 338 cgccactccgccgggctggtacgccatgccggggttccaccctgccggtatggcgttgct 279
Query: 423 ggctatgagtacccggcctgagctgaacgtcaagcggagggggaacgggccctgaagagc 482
||| | | | | |||| ||||||||||||| ||||| || |||||||||||| || ||
Sbjct: 278 ggcaacaaacatctggccggagctgaacgtcaggcggacggagaacgggccctgcagggc 219
Query: 483 agagccagagtcgagcctccagattgcaccccacgaatgctgcatcgg 530
|||| ||| ||||||||| | ||| ||||| || |||||||||||
Sbjct: 218 ggagcggaagttgagcctccacactgcgccccatgactgctgcatcgg 171
>gb|AU029651.1|AU029651 AU029651 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31190_6Z, mRNA sequence
Length = 673
Score = 56.0 bits (28), Expect = 2e-005
Identities = 135/168 (80%), Gaps = 2/168 (1%)
Strand = Plus / Minus
Query: 363 cgccactccgcctgcccggtacgccacacccgcattccatcctgcaggtatggcattgct 422
|||||||||||| | | ||||||||| || | ||||| ||||| |||||||| |||||
Sbjct: 370 cgccactccgccgggctggtacgccatgccggggttccaccctgccggtatggcgttgct 311
Query: 423 ggctatgagtacccggcctgagctgaacgtcaagcggagggggaacgggccctgaagagc 482
||| | | | | |||| ||||||||||||| ||||| || |||||||||||| || ||
Sbjct: 310 ggcaacaaacatctggccggagctgaacgtcaggcggacggagaacgggccctgcag-gc 252
Query: 483 agagccagagtcgagcctccagattgcaccccacgaatgctgcatcgg 530
||| | |||| ||||||||| | ||| ||||| || |||||||||||
Sbjct: 251 ggag-cggagttgagcctccacactgcgccccatgactgctgcatcgg 205
>ref|NT_107075.1| Oryza sativa (japonica cultivar-group)
Length = 389359
Score = 44.1 bits (22), Expect = 0.085
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 197 ctaaatttgttaaatttacacc 218
||||||||||||||||||||||
Sbjct: 309239 ctaaatttgttaaatttacacc 309260
>gb|AACV01020389.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020389, whole
genome shotgun sequence
Length = 15184
Score = 44.1 bits (22), Expect = 0.085
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 197 ctaaatttgttaaatttacacc 218
||||||||||||||||||||||
Sbjct: 3023 ctaaatttgttaaatttacacc 3002
>dbj|AP006173.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0217C03
Length = 58309
Score = 44.1 bits (22), Expect = 0.085
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 197 ctaaatttgttaaatttacacc 218
||||||||||||||||||||||
Sbjct: 6843 ctaaatttgttaaatttacacc 6864
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 44.1 bits (22), Expect = 0.085
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 197 ctaaatttgttaaatttacacc 218
||||||||||||||||||||||
Sbjct: 9402516 ctaaatttgttaaatttacacc 9402537
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 44.1 bits (22), Expect = 0.085
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 197 ctaaatttgttaaatttacacc 218
||||||||||||||||||||||
Sbjct: 18876327 ctaaatttgttaaatttacacc 18876348
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 44.1 bits (22), Expect = 0.085
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 197 ctaaatttgttaaatttacacc 218
||||||||||||||||||||||
Sbjct: 19899757 ctaaatttgttaaatttacacc 19899778
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 797,380
Number of Sequences: 438736
Number of extensions: 797380
Number of successful extensions: 15083
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14896
Number of HSP's gapped (non-prelim): 186
length of query: 594
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 573
effective length of database: 2,791,206,460
effective search space: 1599361301580
effective search space used: 1599361301580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)