BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3202900.2.1
(938 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_107231.1| Oryza sativa (japonica cultivar-group) 62 6e-007
dbj|AP005456.3| Oryza sativa (japonica cultivar-group) geno... 62 6e-007
gb|AACV01014354.1| Oryza sativa (japonica cultivar-group) c... 62 6e-007
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 62 6e-007
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 62 6e-007
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 62 6e-007
gb|AQ857606.1|AQ857606 nbeb0006K11f CUGI Rice BAC Library (... 48 0.009
>ref|NT_107231.1| Oryza sativa (japonica cultivar-group)
Length = 1372977
Score = 61.9 bits (31), Expect = 6e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 656 cttcctctaggaaccaattccaatcctttggagcacgaatccttcccttcgggtaactgt 715
||||||| || |||||||||||||||||||| | |||||| ||||| || || || |||
Sbjct: 1281976 cttcctccagaaaccaattccaatcctttgggggacgaattcttcctttaggatagttgt 1282035
Query: 716 cgaattcatggcccatcgacaggaacccaaattct 750
| ||||| |||||||| || | |||||| ||||||
Sbjct: 1282036 caaattcgtggcccattgataagaacccgaattct 1282070
Score = 48.1 bits (24), Expect = 0.009
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 307 tcctcctcttcatcgctcagctcttctgcaggctcgtcatcctcgtcgttaactaaaaaa 366
||||||||||| |||||||||||||| |||| |||||||| |||||||||| ||||
Sbjct: 1281627 tcctcctcttcctcgctcagctcttccataggc---tcatcctcttcgttaactataaaa 1281683
Query: 367 cc 368
||
Sbjct: 1281684 cc 1281685
>dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0513E02
Length = 141477
Score = 61.9 bits (31), Expect = 6e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 656 cttcctctaggaaccaattccaatcctttggagcacgaatccttcccttcgggtaactgt 715
||||||| || |||||||||||||||||||| | |||||| ||||| || || || |||
Sbjct: 50476 cttcctccagaaaccaattccaatcctttgggggacgaattcttcctttaggatagttgt 50535
Query: 716 cgaattcatggcccatcgacaggaacccaaattct 750
| ||||| |||||||| || | |||||| ||||||
Sbjct: 50536 caaattcgtggcccattgataagaacccgaattct 50570
Score = 48.1 bits (24), Expect = 0.009
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 307 tcctcctcttcatcgctcagctcttctgcaggctcgtcatcctcgtcgttaactaaaaaa 366
||||||||||| |||||||||||||| |||| |||||||| |||||||||| ||||
Sbjct: 50127 tcctcctcttcctcgctcagctcttccataggc---tcatcctcttcgttaactataaaa 50183
Query: 367 cc 368
||
Sbjct: 50184 cc 50185
>gb|AACV01014354.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014354, whole
genome shotgun sequence
Length = 5194
Score = 61.9 bits (31), Expect = 6e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 656 cttcctctaggaaccaattccaatcctttggagcacgaatccttcccttcgggtaactgt 715
||||||| || |||||||||||||||||||| | |||||| ||||| || || || |||
Sbjct: 3676 cttcctccagaaaccaattccaatcctttgggggacgaattcttcctttaggatagttgt 3735
Query: 716 cgaattcatggcccatcgacaggaacccaaattct 750
| ||||| |||||||| || | |||||| ||||||
Sbjct: 3736 caaattcgtggcccattgataagaacccgaattct 3770
Score = 48.1 bits (24), Expect = 0.009
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 307 tcctcctcttcatcgctcagctcttctgcaggctcgtcatcctcgtcgttaactaaaaaa 366
||||||||||| |||||||||||||| |||| |||||||| |||||||||| ||||
Sbjct: 3327 tcctcctcttcctcgctcagctcttccataggc---tcatcctcttcgttaactataaaa 3383
Query: 367 cc 368
||
Sbjct: 3384 cc 3385
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 61.9 bits (31), Expect = 6e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 656 cttcctctaggaaccaattccaatcctttggagcacgaatccttcccttcgggtaactgt 715
||||||| || |||||||||||||||||||| | |||||| ||||| || || || |||
Sbjct: 2861392 cttcctccagaaaccaattccaatcctttgggggacgaattcttcctttaggatagttgt 2861451
Query: 716 cgaattcatggcccatcgacaggaacccaaattct 750
| ||||| |||||||| || | |||||| ||||||
Sbjct: 2861452 caaattcgtggcccattgataagaacccgaattct 2861486
Score = 48.1 bits (24), Expect = 0.009
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 307 tcctcctcttcatcgctcagctcttctgcaggctcgtcatcctcgtcgttaactaaaaaa 366
||||||||||| |||||||||||||| |||| |||||||| |||||||||| ||||
Sbjct: 2861043 tcctcctcttcctcgctcagctcttccataggc---tcatcctcttcgttaactataaaa 2861099
Query: 367 cc 368
||
Sbjct: 2861100 cc 2861101
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 61.9 bits (31), Expect = 6e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 656 cttcctctaggaaccaattccaatcctttggagcacgaatccttcccttcgggtaactgt 715
||||||| || |||||||||||||||||||| | |||||| ||||| || || || |||
Sbjct: 20560129 cttcctccagaaaccaattccaatcctttgggggacgaattcttcctttaggatagttgt 20560188
Query: 716 cgaattcatggcccatcgacaggaacccaaattct 750
| ||||| |||||||| || | |||||| ||||||
Sbjct: 20560189 caaattcgtggcccattgataagaacccgaattct 20560223
Score = 48.1 bits (24), Expect = 0.009
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 307 tcctcctcttcatcgctcagctcttctgcaggctcgtcatcctcgtcgttaactaaaaaa 366
||||||||||| |||||||||||||| |||| |||||||| |||||||||| ||||
Sbjct: 20559780 tcctcctcttcctcgctcagctcttccataggc---tcatcctcttcgttaactataaaa 20559836
Query: 367 cc 368
||
Sbjct: 20559837 cc 20559838
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 61.9 bits (31), Expect = 6e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 656 cttcctctaggaaccaattccaatcctttggagcacgaatccttcccttcgggtaactgt 715
||||||| || |||||||||||||||||||| | |||||| ||||| || || || |||
Sbjct: 21415976 cttcctccagaaaccaattccaatcctttgggggacgaattcttcctttaggatagttgt 21416035
Query: 716 cgaattcatggcccatcgacaggaacccaaattct 750
| ||||| |||||||| || | |||||| ||||||
Sbjct: 21416036 caaattcgtggcccattgataagaacccgaattct 21416070
Score = 48.1 bits (24), Expect = 0.009
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 307 tcctcctcttcatcgctcagctcttctgcaggctcgtcatcctcgtcgttaactaaaaaa 366
||||||||||| |||||||||||||| |||| |||||||| |||||||||| ||||
Sbjct: 21415627 tcctcctcttcctcgctcagctcttccataggc---tcatcctcttcgttaactataaaa 21415683
Query: 367 cc 368
||
Sbjct: 21415684 cc 21415685
>gb|AQ857606.1|AQ857606 nbeb0006K11f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0006K11f, DNA sequence
Length = 841
Score = 48.1 bits (24), Expect = 0.009
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Minus
Query: 307 tcctcctcttcatcgctcagctcttctgcaggctcgtcatcctcgtcgttaactaaaaaa 366
||||||||||| |||||||||||||| |||| |||||||| |||||||||| ||||
Sbjct: 431 tcctcctcttcctcgctcagctcttccataggc---tcatcctcttcgttaactataaaa 375
Query: 367 cc 368
||
Sbjct: 374 cc 373
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,370,803
Number of Sequences: 438736
Number of extensions: 1370803
Number of successful extensions: 9769
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9693
Number of HSP's gapped (non-prelim): 76
length of query: 938
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 917
effective length of database: 2,791,206,460
effective search space: 2559536323820
effective search space used: 2559536323820
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)