BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3199064.2.1
(589 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB641607.1|CB641607 OSJNEb01F10.f OSJNEb Oryza sativa (j... 256 1e-065
gb|CB647961.1|CB647961 OSJNEb11C02.f OSJNEb Oryza sativa (j... 256 1e-065
gb|CB666247.1|CB666247 OSJNEd13B05.f OSJNEd Oryza sativa (j... 256 1e-065
gb|CB668706.1|CB668706 OSJNEd16L02.f OSJNEd Oryza sativa (j... 256 1e-065
dbj|AK099406.1| Oryza sativa (japonica cultivar-group) cDNA... 256 1e-065
dbj|AK102158.1| Oryza sativa (japonica cultivar-group) cDNA... 256 1e-065
gb|CB677314.1|CB677314 OSJNEe14C01.f OSJNEe Oryza sativa (j... 238 3e-060
gb|CF303717.1|CF303717 ABF1--03-A11.g1 ABF3-overexpressing ... 236 1e-059
gb|CB648550.1|CB648550 OSJNEb11P18.f OSJNEb Oryza sativa (j... 212 2e-052
gb|CB647500.1|CB647500 OSJNEb10H08.f OSJNEb Oryza sativa (j... 210 6e-052
gb|CB682789.1|CB682789 OSJNEf10H11.f OSJNEf Oryza sativa (j... 208 2e-051
dbj|AK060797.1| Oryza sativa (japonica cultivar-group) cDNA... 188 2e-045
gb|C28676.1|C28676 C28676 Rice callus cDNA Oryza sativa (ja... 157 8e-036
gb|AU094324.1|AU094324 AU094324 Rice panicle at flowering s... 157 8e-036
dbj|AK067094.1| Oryza sativa (japonica cultivar-group) cDNA... 157 8e-036
ref|XM_474158.1| Oryza sativa (japonica cultivar-group), p... 157 8e-036
gb|CF312930.1|CF312930 ABF--08-N24.g1 ABF3-overexpressing t... 145 3e-032
gb|AC118671.1| Oryza sativa (japonica cultivar-group) chrom... 135 3e-029
gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbar... 135 3e-029
gb|AC121491.2| Oryza sativa (japonica cultivar-group) chrom... 135 3e-029
gb|AACV01006568.1| Oryza sativa (japonica cultivar-group) c... 135 3e-029
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 135 3e-029
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 135 3e-029
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 135 3e-029
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 135 3e-029
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 135 3e-029
gb|CG408801.1|CG408801 Ds494 Ds insertion lines Oryza sativ... 125 3e-026
gb|D15951.1|D15951 RICC1663A Rice callus Oryza sativa (japo... 121 4e-025
gb|AACV01010596.1| Oryza sativa (japonica cultivar-group) c... 98 6e-018
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 98 6e-018
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 98 6e-018
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 98 6e-018
emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromoso... 98 6e-018
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 98 6e-018
gb|CF196302.1|CF196302 Azvi2.1_C04 AZ-VI Oryza sativa (japo... 90 2e-015
gb|CB641006.1|CB641006 OSJNEa17G16.f OSJNEa Oryza sativa (j... 88 6e-015
gb|CB645602.1|CB645602 OSJNEb07G15.f OSJNEb Oryza sativa (j... 88 6e-015
gb|CA997874.1|CA997874 S234B1_H11 Rice cold stress germinat... 84 1e-013
gb|L03366.1|RICRSS3 Oryza sativa sucrose synthase 3 (RSs3) ... 84 1e-013
dbj|AK100306.1| Oryza sativa (japonica cultivar-group) cDNA... 84 1e-013
dbj|AP004308.3| Oryza sativa (japonica cultivar-group) geno... 84 1e-013
dbj|AP004988.3| Oryza sativa (japonica cultivar-group) geno... 84 1e-013
gb|AACV01016794.1| Oryza sativa (japonica cultivar-group) c... 84 1e-013
ref|NM_189807.2| Oryza sativa (japonica cultivar-group), mRNA 84 1e-013
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 84 1e-013
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 84 1e-013
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 84 1e-013
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 84 1e-013
gb|AU174261.1|AU174261 AU174261 Rice shoot Oryza sativa (ja... 78 6e-012
dbj|AG022513.1| Oryza sativa (japonica cultivar-group) DNA,... 72 4e-010
dbj|AG022762.1| Oryza sativa (japonica cultivar-group) DNA,... 72 4e-010
dbj|AG023499.1| Oryza sativa (japonica cultivar-group) DNA,... 72 4e-010
gb|D39069.1|D39069 RICR1717A Rice root Oryza sativa (japoni... 72 4e-010
gb|D39365.1|D39365 RICS0047A Rice shoot Oryza sativa (japon... 72 4e-010
gb|C25816.1|C25816 C25816 Rice callus cDNA Oryza sativa (ja... 72 4e-010
gb|C72595.1|C72595 C72595 Rice panicle at flowering stage O... 72 4e-010
gb|C72710.1|C72710 C72710 Rice panicle at flowering stage O... 72 4e-010
gb|CA999233.1|CA999233 S234P_A09 Rice cold stress germinati... 72 4e-010
gb|CB646527.1|CB646527 OSJNEb09B04.f OSJNEb Oryza sativa (j... 72 4e-010
gb|CB668146.1|CB668146 OSJNEd15N18.f OSJNEd Oryza sativa (j... 72 4e-010
gb|CF331323.1|CF331323 NACL--07-G11.b1 Rice callus plasmid ... 72 4e-010
gb|AF527712.1|AF527712 AF527712 Oryza sativa (japonica cult... 72 4e-010
gb|CV728526.1|CV728526 COLD--01-M03.b1 Cold treated rice le... 72 4e-010
gb|AU312022.1|AU312022 AU312022 Oryza sativa pistil cDNA Or... 72 4e-010
dbj|AP004697.1| Oryza sativa (japonica cultivar-group) chro... 72 4e-010
dbj|AK072074.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AK098923.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AK100546.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AK119193.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AP004280.3| Oryza sativa (japonica cultivar-group) geno... 72 4e-010
gb|AACV01013212.1| Oryza sativa (japonica cultivar-group) c... 72 4e-010
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 72 4e-010
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 72 4e-010
gb|L39940.1|RICSUS2 Oryza sativa sucrose synthase 2 (Sus2) ... 72 4e-010
gb|CA754457.1|CA754457 BR040017000_PLATE_E04_29_033.ab1 OA ... 68 6e-009
dbj|AB155219.1| Oryza sativa (japonica cultivar-group) DNA,... 66 2e-008
gb|C19527.2|C19527 C19527 Rice panicle at ripening stage Or... 58 6e-006
gb|CB662799.1|CB662799 OSJNEd07C12.f OSJNEd Oryza sativa (j... 56 2e-005
gb|AU312001.1|AU312001 AU312001 Oryza sativa pistil cDNA Or... 54 9e-005
dbj|AK065549.1| Oryza sativa (japonica cultivar-group) cDNA... 54 9e-005
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
gb|AACV01005685.1| Oryza sativa (japonica cultivar-group) c... 54 9e-005
ref|XM_468546.1| Oryza sativa (japonica cultivar-group), mRNA 54 9e-005
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 54 9e-005
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
gb|AC084764.11| Oryza sativa (japonica cultivar-group) chro... 48 0.005
emb|BX000505.1|CNS08CDV Oryza sativa chromosome 12, . BAC O... 48 0.005
dbj|AP005516.5| Oryza sativa (japonica cultivar-group) geno... 48 0.005
ref|NT_107145.1| Oryza sativa (japonica cultivar-group) 48 0.005
gb|AACV01000515.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
gb|AACV01007105.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
gb|AACV01015489.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
gb|AACV01016094.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
gb|AACV01023871.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 48 0.005
ref|NT_107174.1| Oryza sativa (japonica cultivar-group) 48 0.005
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 48 0.005
dbj|AP005256.3| Oryza sativa (japonica cultivar-group) geno... 48 0.005
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 48 0.005
dbj|AP001550.1| Oryza sativa (japonica cultivar-group) geno... 48 0.005
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 48 0.005
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 48 0.005
gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone... 48 0.005
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
dbj|AP004874.1| Oryza sativa (japonica cultivar-group) chro... 42 0.33
gb|AC092749.1| Genomic sequence for Oryza sativa (japonica ... 42 0.33
gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbar... 42 0.33
gb|AC093489.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|AC109929.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
dbj|AP005694.3| Oryza sativa (japonica cultivar-group) geno... 42 0.33
dbj|AP005806.3| Oryza sativa (japonica cultivar-group) geno... 42 0.33
ref|NT_079876.2| Oryza sativa (japonica cultivar-group) 42 0.33
ref|NT_107116.1| Oryza sativa (japonica cultivar-group) 42 0.33
ref|NT_107131.1| Oryza sativa (japonica cultivar-group) 42 0.33
gb|AC148611.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|AACV01003907.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01006186.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01011058.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01013875.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01021311.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01022788.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01023465.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 42 0.33
ref|NT_107190.1| Oryza sativa (japonica cultivar-group) 42 0.33
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 42 0.33
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 42 0.33
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.33
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 42 0.33
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 42 0.33
gb|AC135497.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
>gb|CB641607.1|CB641607 OSJNEb01F10.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01F10 5', mRNA sequence
Length = 801
Score = 256 bits (129), Expect = 1e-065
Identities = 258/301 (85%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 333 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 392
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 393 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 452
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaacacattgggcatctggatgacc 186
| ||||| ||||||| |||||| |||||||| || ||||| ||||| || |||||||||
Sbjct: 453 ttgaaaacttgatttctgacccagagcaaaatgacgaacatattggacacctggatgaca 512
Query: 187 ggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataacagggc 246
| ||||| ||||| ||||| |||||||||||||| ||| | || |||||||||||||||
Sbjct: 513 gatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggt 572
Query: 247 tggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaaccttgtcgtcgttg 306
|||| ||||||| |||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct: 573 tggttgaagcttatgctaaaaacgctaggctgagggagctggtaaaccttgtcgtggttg 632
Query: 307 c 307
|
Sbjct: 633 c 633
>gb|CB647961.1|CB647961 OSJNEb11C02.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11C02 5', mRNA sequence
Length = 803
Score = 256 bits (129), Expect = 1e-065
Identities = 258/301 (85%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 177 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 236
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 237 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 296
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaacacattgggcatctggatgacc 186
| ||||| ||||||| |||||| |||||||| || ||||| ||||| || |||||||||
Sbjct: 297 ttgaaaacttgatttctgacccagagcaaaatgacgaacatattggacacctggatgaca 356
Query: 187 ggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataacagggc 246
| ||||| ||||| ||||| |||||||||||||| ||| | || |||||||||||||||
Sbjct: 357 gatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggt 416
Query: 247 tggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaaccttgtcgtcgttg 306
|||| ||||||| |||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct: 417 tggttgaagcttatgctaaaaacgctaggctgagggagctggtaaaccttgtcgtggttg 476
Query: 307 c 307
|
Sbjct: 477 c 477
>gb|CB666247.1|CB666247 OSJNEd13B05.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13B05 5', mRNA sequence
Length = 817
Score = 256 bits (129), Expect = 1e-065
Identities = 258/301 (85%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 500 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 559
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 560 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 619
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaacacattgggcatctggatgacc 186
| ||||| ||||||| |||||| |||||||| || ||||| ||||| || |||||||||
Sbjct: 620 ttgaaaacttgatttctgacccagagcaaaatgacgaacatattggacacctggatgaca 679
Query: 187 ggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataacagggc 246
| ||||| ||||| ||||| |||||||||||||| ||| | || |||||||||||||||
Sbjct: 680 gatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggt 739
Query: 247 tggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaaccttgtcgtcgttg 306
|||| ||||||| |||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct: 740 tggttgaagcttatgctaaaaacgctaggctgagggagctggtaaaccttgtcgtggttg 799
Query: 307 c 307
|
Sbjct: 800 c 800
>gb|CB668706.1|CB668706 OSJNEd16L02.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16L02 5', mRNA sequence
Length = 824
Score = 256 bits (129), Expect = 1e-065
Identities = 258/301 (85%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 229 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 288
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 289 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 348
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaacacattgggcatctggatgacc 186
| ||||| ||||||| |||||| |||||||| || ||||| ||||| || |||||||||
Sbjct: 349 ttgaaaacttgatttctgacccagagcaaaatgacgaacatattggacacctggatgaca 408
Query: 187 ggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataacagggc 246
| ||||| ||||| ||||| |||||||||||||| ||| | || |||||||||||||||
Sbjct: 409 gatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggt 468
Query: 247 tggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaaccttgtcgtcgttg 306
|||| ||||||| |||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct: 469 tggttgaagcttatgctaaaaacgctaggctgagggagctggtaaaccttgtcgtggttg 528
Query: 307 c 307
|
Sbjct: 529 c 529
>dbj|AK099406.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001M19, full
insert sequence
Length = 2716
Score = 256 bits (129), Expect = 1e-065
Identities = 258/301 (85%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 1574 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 1633
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 1634 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 1693
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaacacattgggcatctggatgacc 186
| ||||| ||||||| |||||| |||||||| || ||||| ||||| || |||||||||
Sbjct: 1694 ttgaaaacttgatttctgacccagagcaaaatgacgaacatattggacacctggatgaca 1753
Query: 187 ggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataacagggc 246
| ||||| ||||| ||||| |||||||||||||| ||| | || |||||||||||||||
Sbjct: 1754 gatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggt 1813
Query: 247 tggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaaccttgtcgtcgttg 306
|||| ||||||| |||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct: 1814 tggttgaagcttatgctaaaaacgctaggctgagggagctggtaaaccttgtcgtggttg 1873
Query: 307 c 307
|
Sbjct: 1874 c 1874
>dbj|AK102158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086F24, full
insert sequence
Length = 2763
Score = 256 bits (129), Expect = 1e-065
Identities = 258/301 (85%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 1575 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 1634
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 1635 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 1694
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaacacattgggcatctggatgacc 186
| ||||| ||||||| |||||| |||||||| || ||||| ||||| || |||||||||
Sbjct: 1695 ttgaaaacttgatttctgacccagagcaaaatgacgaacatattggacacctggatgaca 1754
Query: 187 ggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataacagggc 246
| ||||| ||||| ||||| |||||||||||||| ||| | || |||||||||||||||
Sbjct: 1755 gatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggt 1814
Query: 247 tggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaaccttgtcgtcgttg 306
|||| ||||||| |||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct: 1815 tggttgaagcttatgctaaaaacgctaggctgagggagctggtaaaccttgtcgtggttg 1874
Query: 307 c 307
|
Sbjct: 1875 c 1875
>gb|CB677314.1|CB677314 OSJNEe14C01.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe14C01 5', mRNA sequence
Length = 785
Score = 238 bits (120), Expect = 3e-060
Identities = 249/292 (85%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 494 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 553
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 554 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 613
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaacacattgggcatctggatgacc 186
| ||||| ||||||| |||||| |||||||| || ||||| ||||| || |||||||||
Sbjct: 614 ttgaaaacttgatttctgacccagagcaaaatgacgaacatattggacacctggatgaca 673
Query: 187 ggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataacagggc 246
| ||||| ||||| ||||| |||||||||||||| ||| | || |||||||||||||||
Sbjct: 674 gatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggt 733
Query: 247 tggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaaccttgt 298
|||| ||||||| |||||| ||||| ||||| ||||||||||||||||||
Sbjct: 734 tggttgaagcttatgctaaaaacgctatgctgacggagctggtaaaccttgt 785
>gb|CF303717.1|CF303717 ABF1--03-A11.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--03-A11, mRNA sequence
Length = 589
Score = 236 bits (119), Expect = 1e-059
Identities = 236/275 (85%)
Strand = Plus / Plus
Query: 33 ccaaagttcaatatagtctctcctggagctgacatgtccatatactttccacataccgag 92
||||||||||| ||||||||||| ||||| |||||||| ||||||||||| | || ||
Sbjct: 18 ccaaagttcaacatagtctctccaggagcagacatgtctatatactttccgtacactgaa 77
Query: 93 aaggccaagcgactcacctctcttcatggttcaatcgaaaatttgatttatgacccggag 152
||||||||||| ||||| || |||||||||||| | ||||| ||||||| |||||| |||
Sbjct: 78 aaggccaagcggctcacttcgcttcatggttcacttgaaaacttgatttctgacccagag 137
Query: 153 caaaacgatgaacacattgggcatctggatgaccggtcaaagcccatcctcttctccatg 212
||||| || ||||| ||||| || ||||||||| | ||||| ||||| ||||| ||||||
Sbjct: 138 caaaatgacgaacatattggacacctggatgacagatcaaaacccattctcttttccatg 197
Query: 213 gcaagactcgacagggtgaagaacataacagggctggtcgaagcttttgctaagtgcgct 272
|||||||| ||| | || ||||||||||||||| |||| ||||||| |||||| ||||
Sbjct: 198 gcaagacttgaccgagttaagaacataacagggttggttgaagcttatgctaaaaacgct 257
Query: 273 aagctgagggagctggtaaaccttgtcgtcgttgc 307
| ||||||||||||||||||||||||||| |||||
Sbjct: 258 aggctgagggagctggtaaaccttgtcgtggttgc 292
>gb|CB648550.1|CB648550 OSJNEb11P18.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11P18 5', mRNA sequence
Length = 841
Score = 212 bits (107), Expect = 2e-052
Identities = 221/259 (85%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 582 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 641
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 642 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 701
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaacacattgggcatctggatgacc 186
| ||||| ||||||| |||||| |||||||| || ||||| ||||| || |||||||||
Sbjct: 702 ttgaaaacttgatttctgacccagagcaaaatgacgaacatattggacacctggatgaca 761
Query: 187 ggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataacagggc 246
| ||||| ||||| ||||| |||||||||||||| ||| | || |||||||||||||||
Sbjct: 762 gatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggt 821
Query: 247 tggtcgaagcttttgctaa 265
|||| ||||||| ||||||
Sbjct: 822 tggttgaagcttatgctaa 840
>gb|CB647500.1|CB647500 OSJNEb10H08.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10H08 5', mRNA sequence
Length = 797
Score = 210 bits (106), Expect = 6e-052
Identities = 220/258 (85%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 527 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 586
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 587 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 646
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaacacattgggcatctggatgacc 186
| ||||| ||||||| |||||| |||||||| || ||||| ||||| || |||||||||
Sbjct: 647 ttgaaaacttgatttctgacccagagcaaaatgacgaacatattggacacctggatgaca 706
Query: 187 ggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataacagggc 246
| ||||| ||||| ||||| |||||||||||||| ||| | || |||||||||||||||
Sbjct: 707 gatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggt 766
Query: 247 tggtcgaagcttttgcta 264
|||| ||||||| |||||
Sbjct: 767 tggttgaagcttatgcta 784
>gb|CB682789.1|CB682789 OSJNEf10H11.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10H11 5', mRNA sequence
Length = 767
Score = 208 bits (105), Expect = 2e-051
Identities = 219/257 (85%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 503 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 562
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 563 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 622
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaacacattgggcatctggatgacc 186
| ||||| ||||||| |||||| |||||||| || ||||| ||||| || |||||||||
Sbjct: 623 ttgaaaacttgatttctgacccagagcaaaatgacgaacatattggacacctggatgaca 682
Query: 187 ggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataacagggc 246
| ||||| ||||| ||||| |||||||||||||| ||| | || |||||||||||||||
Sbjct: 683 gatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggt 742
Query: 247 tggtcgaagcttttgct 263
|||| ||||||| ||||
Sbjct: 743 tggttgaagcttatgct 759
>dbj|AK060797.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F01, full
insert sequence
Length = 1082
Score = 188 bits (95), Expect = 2e-045
Identities = 185/215 (86%)
Strand = Plus / Plus
Query: 93 aaggccaagcgactcacctctcttcatggttcaatcgaaaatttgatttatgacccggag 152
||||||||||| ||||| || |||||||||||| | ||||| ||||||| |||||| |||
Sbjct: 18 aaggccaagcggctcacttcgcttcatggttcacttgaaaacttgatttctgacccagag 77
Query: 153 caaaacgatgaacacattgggcatctggatgaccggtcaaagcccatcctcttctccatg 212
||||| || ||||| ||||| || ||||||||| | ||||| ||||| ||||| ||||||
Sbjct: 78 caaaatgacgaacatattggacacctggatgacagatcaaaacccattctcttttccatg 137
Query: 213 gcaagactcgacagggtgaagaacataacagggctggtcgaagcttttgctaagtgcgct 272
|||||||| ||| | || ||||||||||||||| |||| ||||||| |||||| ||||
Sbjct: 138 gcaagacttgaccgagttaagaacataacagggttggttgaagcttatgctaaaaacgct 197
Query: 273 aagctgagggagctggtaaaccttgtcgtcgttgc 307
| ||||||||||||||||||||||||||| |||||
Sbjct: 198 aggctgagggagctggtaaaccttgtcgtggttgc 232
>gb|C28676.1|C28676 C28676 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C62029_1A, mRNA sequence
Length = 450
Score = 157 bits (79), Expect = 8e-036
Identities = 175/207 (84%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 117 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 176
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 177 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 236
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaacacattgggcatctggatgacc 186
| ||||| ||||||| |||||| |||||||| || | ||| ||||| || |||||||||
Sbjct: 237 ttgaaaacttgatttctgacccagagcaaaatgacggacatattggacacctggatgaca 296
Query: 187 ggtcaaagcccatcctcttctccatgg 213
| ||||| ||||| ||||| |||||||
Sbjct: 297 gatcaaaacccattctcttttccatgg 323
>gb|AU094324.1|AU094324 AU094324 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4223, mRNA sequence
Length = 706
Score = 157 bits (79), Expect = 8e-036
Identities = 151/177 (85%), Gaps = 1/177 (0%)
Strand = Plus / Plus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 332 tcagccctggtcctgtacttcgtccacactcaactcccagtgagacctgtctttgcatca 391
Query: 421 tcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtcgcgcttcaagaa 480
|| ||||||||||||||||||| | || || ||||||| ||||| || |||||||||||
Sbjct: 392 tctattggtttaggtatatctg-ctgccctcttgtcggtcatgggatctcgcttcaagaa 450
Query: 481 gtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggtcatggtcgg 537
|||||||||||| ||||||||||||||||| |||| || ||| |||||||||||||
Sbjct: 451 gtccgggaagatattcccagctggtgtcgtttccctcgtctccttggtcatggtcgg 507
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 337 atgaagagtggaagccagaaatcctcagcc 366
||||||||||||||||||||||||| ||||
Sbjct: 290 atgaagagtggaagccagaaatccttagcc 319
>dbj|AK067094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098P05, full
insert sequence
Length = 912
Score = 157 bits (79), Expect = 8e-036
Identities = 151/177 (85%), Gaps = 1/177 (0%)
Strand = Plus / Plus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 457 tcagccctggtcctgtacttcgtccacactcaactcccagtgagacctgtctttgcatca 516
Query: 421 tcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtcgcgcttcaagaa 480
|| ||||||||||||||||||| | || || ||||||| ||||| || |||||||||||
Sbjct: 517 tctattggtttaggtatatctg-ctgccctcttgtcggtcatgggatctcgcttcaagaa 575
Query: 481 gtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggtcatggtcgg 537
|||||||||||| ||||||||||||||||| |||| || ||| |||||||||||||
Sbjct: 576 gtccgggaagatattcccagctggtgtcgtttccctcgtctccttggtcatggtcgg 632
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 337 atgaagagtggaagccagaaatcctcagcc 366
||||||||||||||||||||||||| ||||
Sbjct: 415 atgaagagtggaagccagaaatccttagcc 444
>ref|XM_474158.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 624
Score = 157 bits (79), Expect = 8e-036
Identities = 151/177 (85%), Gaps = 1/177 (0%)
Strand = Plus / Plus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 409 tcagccctggtcctgtacttcgtccacactcaactcccagtgagacctgtctttgcatca 468
Query: 421 tcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtcgcgcttcaagaa 480
|| ||||||||||||||||||| | || || ||||||| ||||| || |||||||||||
Sbjct: 469 tctattggtttaggtatatctg-ctgccctcttgtcggtcatgggatctcgcttcaagaa 527
Query: 481 gtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggtcatggtcgg 537
|||||||||||| ||||||||||||||||| |||| || ||| |||||||||||||
Sbjct: 528 gtccgggaagatattcccagctggtgtcgtttccctcgtctccttggtcatggtcgg 584
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 337 atgaagagtggaagccagaaatcctcagcc 366
||||||||||||||||||||||||| ||||
Sbjct: 367 atgaagagtggaagccagaaatccttagcc 396
>gb|CF312930.1|CF312930 ABF--08-N24.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-N24, mRNA sequence
Length = 655
Score = 145 bits (73), Expect = 3e-032
Identities = 179/212 (84%), Gaps = 2/212 (0%)
Strand = Plus / Plus
Query: 11 ccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgacatgtc 70
||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 433 ccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagacatgtc 492
Query: 71 catatac-tttcca-cataccgagaaggccaagcgactcacctctcttcatggttcaatc 128
|||||| ||||| | || || ||||||||||| ||||| || |||||||||||| |
Sbjct: 493 tatatacctttccgtnacactgaaaaggccaagcggctcacttcgcttcatggttcactt 552
Query: 129 gaaaatttgatttatgacccggagcaaaacgatgaacacattgggcatctggatgaccgg 188
||||| ||||||| |||||| |||||||| || ||||| ||||| || ||||||||| |
Sbjct: 553 gaaaacttgatttctgacccagagcaaaatgacgaacatattggacacctggatgacaga 612
Query: 189 tcaaagcccatcctcttctccatggcaagact 220
||||| ||||| ||||| ||||||||||||||
Sbjct: 613 tcaaaacccattctcttttccatggcaagact 644
>gb|AC118671.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0050D18, *** SEQUENCING IN PROGRESS ***, 10
unordered pieces
Length = 117605
Score = 135 bits (68), Expect = 3e-029
Identities = 137/160 (85%)
Strand = Plus / Minus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 47930 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 47871
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 47870 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 47811
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaaca 166
| ||||| ||||||| |||||| |||||||| || |||||
Sbjct: 47810 ttgaaaacttgatttctgacccagagcaaaatgacgaaca 47771
Score = 125 bits (63), Expect = 3e-026
Identities = 114/131 (87%)
Strand = Plus / Minus
Query: 177 ctggatgaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaac 236
||||||||| | ||||| ||||| ||||| |||||||||||||| ||| | || ||||||
Sbjct: 47485 ctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaac 47426
Query: 237 ataacagggctggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaacctt 296
||||||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct: 47425 ataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaacctt 47366
Query: 297 gtcgtcgttgc 307
||||| |||||
Sbjct: 47365 gtcgtggttgc 47355
>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0030D15, from chromosome 3, complete sequence
Length = 151972
Score = 135 bits (68), Expect = 3e-029
Identities = 137/160 (85%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 25809 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 25868
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 25869 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 25928
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaaca 166
| ||||| ||||||| |||||| |||||||| || |||||
Sbjct: 25929 ttgaaaacttgatttctgacccagagcaaaatgacgaaca 25968
Score = 125 bits (63), Expect = 3e-026
Identities = 114/131 (87%)
Strand = Plus / Plus
Query: 177 ctggatgaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaac 236
||||||||| | ||||| ||||| ||||| |||||||||||||| ||| | || ||||||
Sbjct: 26254 ctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaac 26313
Query: 237 ataacagggctggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaacctt 296
||||||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct: 26314 ataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaacctt 26373
Query: 297 gtcgtcgttgc 307
||||| |||||
Sbjct: 26374 gtcgtggttgc 26384
>gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0050D18, complete sequence
Length = 126350
Score = 135 bits (68), Expect = 3e-029
Identities = 137/160 (85%)
Strand = Plus / Minus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 5633 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 5574
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 5573 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 5514
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaaca 166
| ||||| ||||||| |||||| |||||||| || |||||
Sbjct: 5513 ttgaaaacttgatttctgacccagagcaaaatgacgaaca 5474
Score = 125 bits (63), Expect = 3e-026
Identities = 114/131 (87%)
Strand = Plus / Minus
Query: 177 ctggatgaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaac 236
||||||||| | ||||| ||||| ||||| |||||||||||||| ||| | || ||||||
Sbjct: 5188 ctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaac 5129
Query: 237 ataacagggctggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaacctt 296
||||||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct: 5128 ataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaacctt 5069
Query: 297 gtcgtcgttgc 307
||||| |||||
Sbjct: 5068 gtcgtggttgc 5058
>gb|AACV01006568.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006568, whole
genome shotgun sequence
Length = 110919
Score = 135 bits (68), Expect = 3e-029
Identities = 137/160 (85%)
Strand = Plus / Minus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 60087 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 60028
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 60027 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 59968
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaaca 166
| ||||| ||||||| |||||| |||||||| || |||||
Sbjct: 59967 ttgaaaacttgatttctgacccagagcaaaatgacgaaca 59928
Score = 125 bits (63), Expect = 3e-026
Identities = 114/131 (87%)
Strand = Plus / Minus
Query: 177 ctggatgaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaac 236
||||||||| | ||||| ||||| ||||| |||||||||||||| ||| | || ||||||
Sbjct: 59642 ctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaac 59583
Query: 237 ataacagggctggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaacctt 296
||||||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct: 59582 ataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaacctt 59523
Query: 297 gtcgtcgttgc 307
||||| |||||
Sbjct: 59522 gtcgtggttgc 59512
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 135 bits (68), Expect = 3e-029
Identities = 137/160 (85%)
Strand = Plus / Minus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 3993440 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 3993381
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 3993380 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 3993321
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaaca 166
| ||||| ||||||| |||||| |||||||| || |||||
Sbjct: 3993320 ttgaaaacttgatttctgacccagagcaaaatgacgaaca 3993281
Score = 125 bits (63), Expect = 3e-026
Identities = 114/131 (87%)
Strand = Plus / Minus
Query: 177 ctggatgaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaac 236
||||||||| | ||||| ||||| ||||| |||||||||||||| ||| | || ||||||
Sbjct: 3992995 ctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaac 3992936
Query: 237 ataacagggctggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaacctt 296
||||||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct: 3992935 ataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaacctt 3992876
Query: 297 gtcgtcgttgc 307
||||| |||||
Sbjct: 3992875 gtcgtggttgc 3992865
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 135 bits (68), Expect = 3e-029
Identities = 137/160 (85%)
Strand = Plus / Minus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 12738806 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 12738747
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 12738746 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 12738687
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaaca 166
| ||||| ||||||| |||||| |||||||| || |||||
Sbjct: 12738686 ttgaaaacttgatttctgacccagagcaaaatgacgaaca 12738647
Score = 125 bits (63), Expect = 3e-026
Identities = 114/131 (87%)
Strand = Plus / Minus
Query: 177 ctggatgaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaac 236
||||||||| | ||||| ||||| ||||| |||||||||||||| ||| | || ||||||
Sbjct: 12738361 ctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaac 12738302
Query: 237 ataacagggctggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaacctt 296
||||||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct: 12738301 ataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaacctt 12738242
Query: 297 gtcgtcgttgc 307
||||| |||||
Sbjct: 12738241 gtcgtggttgc 12738231
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 301 tcgttgcaacgcacgggcact 321
|||||||||||||||||||||
Sbjct: 7418023 tcgttgcaacgcacgggcact 7418043
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 135 bits (68), Expect = 3e-029
Identities = 137/160 (85%)
Strand = Plus / Minus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 12931168 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 12931109
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 12931108 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 12931049
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaaca 166
| ||||| ||||||| |||||| |||||||| || |||||
Sbjct: 12931048 ttgaaaacttgatttctgacccagagcaaaatgacgaaca 12931009
Score = 125 bits (63), Expect = 3e-026
Identities = 114/131 (87%)
Strand = Plus / Minus
Query: 177 ctggatgaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaac 236
||||||||| | ||||| ||||| ||||| |||||||||||||| ||| | || ||||||
Sbjct: 12930723 ctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaac 12930664
Query: 237 ataacagggctggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaacctt 296
||||||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct: 12930663 ataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaacctt 12930604
Query: 297 gtcgtcgttgc 307
||||| |||||
Sbjct: 12930603 gtcgtggttgc 12930593
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 302 cgttgcaacgcacgggcactcagctagt 329
|||||||||||||||||| |||||||||
Sbjct: 20694109 cgttgcaacgcacgggcattcagctagt 20694136
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 301 tcgttgcaacgcacgggcact 321
|||||||||||||||||||||
Sbjct: 7610385 tcgttgcaacgcacgggcact 7610405
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 135 bits (68), Expect = 3e-029
Identities = 137/160 (85%)
Strand = Plus / Minus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 12647943 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 12647884
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 12647883 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 12647824
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaaca 166
| ||||| ||||||| |||||| |||||||| || |||||
Sbjct: 12647823 ttgaaaacttgatttctgacccagagcaaaatgacgaaca 12647784
Score = 125 bits (63), Expect = 3e-026
Identities = 114/131 (87%)
Strand = Plus / Minus
Query: 177 ctggatgaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaac 236
||||||||| | ||||| ||||| ||||| |||||||||||||| ||| | || ||||||
Sbjct: 12647498 ctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaac 12647439
Query: 237 ataacagggctggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaacctt 296
||||||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct: 12647438 ataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaacctt 12647379
Query: 297 gtcgtcgttgc 307
||||| |||||
Sbjct: 12647378 gtcgtggttgc 12647368
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 302 cgttgcaacgcacgggcactcagctagt 329
|||||||||||||||||| |||||||||
Sbjct: 20182053 cgttgcaacgcacgggcattcagctagt 20182080
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 301 tcgttgcaacgcacgggcact 321
|||||||||||||||||||||
Sbjct: 7396918 tcgttgcaacgcacgggcact 7396938
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 135 bits (68), Expect = 3e-029
Identities = 137/160 (85%)
Strand = Plus / Minus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 12651180 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 12651121
Query: 67 tgtccatatactttccacataccgagaaggccaagcgactcacctctcttcatggttcaa 126
|||| ||||||||||| | || || ||||||||||| ||||| || ||||||||||||
Sbjct: 12651120 tgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcac 12651061
Query: 127 tcgaaaatttgatttatgacccggagcaaaacgatgaaca 166
| ||||| ||||||| |||||| |||||||| || |||||
Sbjct: 12651060 ttgaaaacttgatttctgacccagagcaaaatgacgaaca 12651021
Score = 125 bits (63), Expect = 3e-026
Identities = 114/131 (87%)
Strand = Plus / Minus
Query: 177 ctggatgaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaac 236
||||||||| | ||||| ||||| ||||| |||||||||||||| ||| | || ||||||
Sbjct: 12650735 ctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaac 12650676
Query: 237 ataacagggctggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaacctt 296
||||||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct: 12650675 ataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaacctt 12650616
Query: 297 gtcgtcgttgc 307
||||| |||||
Sbjct: 12650615 gtcgtggttgc 12650605
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 302 cgttgcaacgcacgggcactcagctagt 329
|||||||||||||||||| |||||||||
Sbjct: 20189026 cgttgcaacgcacgggcattcagctagt 20189053
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 301 tcgttgcaacgcacgggcact 321
|||||||||||||||||||||
Sbjct: 7399083 tcgttgcaacgcacgggcact 7399103
>gb|CG408801.1|CG408801 Ds494 Ds insertion lines Oryza sativa (japonica cultivar-group)
genomic, DNA sequence
Length = 425
Score = 125 bits (63), Expect = 3e-026
Identities = 114/131 (87%)
Strand = Plus / Plus
Query: 177 ctggatgaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaac 236
||||||||| | ||||| ||||| ||||| |||||||||||||| ||| | || ||||||
Sbjct: 21 ctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaac 80
Query: 237 ataacagggctggtcgaagcttttgctaagtgcgctaagctgagggagctggtaaacctt 296
||||||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct: 81 ataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaacctt 140
Query: 297 gtcgtcgttgc 307
||||| |||||
Sbjct: 141 gtcgtggttgc 151
>gb|D15951.1|D15951 RICC1663A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1663A, mRNA sequence
Length = 394
Score = 121 bits (61), Expect = 4e-025
Identities = 113/129 (87%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 409 gtctttgcatcgtcgattggtttaggtatatctggccgcgcttctgtcggtgatggggtc 468
||||||||||| || ||||||||||||||||||| | || || ||||||| ||||| ||
Sbjct: 28 gtctttgcatcatctattggtttaggtatatctg-ctgccctcttgtcggtcatgggatc 86
Query: 469 gcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgtcccatgtatccctggt 528
||||||||||||||||||||||| ||||||||||||||||| |||| || ||| ||||
Sbjct: 87 tcgcttcaagaagtccgggaagatattcccagctggtgtcgtttccctcgtctccttggt 146
Query: 529 catggtcgg 537
|||||||||
Sbjct: 147 catggtcgg 155
>gb|AACV01010596.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010596, whole
genome shotgun sequence
Length = 13491
Score = 97.6 bits (49), Expect = 6e-018
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 453 tgtcggtgatggggtcgcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgt 512
||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 13097 tgtcggtcatgggatctcgcttcaagaagtccgggaagatattcccagctggtgtcgttt 13156
Query: 513 cccatgtatccctggtcatggtcgg 537
||| || ||| |||||||||||||
Sbjct: 13157 ccctcgtctccttggtcatggtcgg 13181
Score = 77.8 bits (39), Expect = 6e-012
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 12887 tcagccctggtcctgtacttcgtccacactcaactcccagtgagacctgtctttgcatca 12946
Query: 421 tcgattggtttaggtat 437
|| ||||||||||||||
Sbjct: 12947 tctattggtttaggtat 12963
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 337 atgaagagtggaagccagaaatcctcagcc 366
||||||||||||||||||||||||| ||||
Sbjct: 12845 atgaagagtggaagccagaaatccttagcc 12874
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 97.6 bits (49), Expect = 6e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 453 tgtcggtgatggggtcgcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgt 512
||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 740382 tgtcggtcatgggatctcgcttcaagaagtccgggaagatattcccagctggtgtcgttt 740323
Query: 513 cccatgtatccctggtcatggtcgg 537
||| || ||| |||||||||||||
Sbjct: 740322 ccctcgtctccttggtcatggtcgg 740298
Score = 77.8 bits (39), Expect = 6e-012
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 740592 tcagccctggtcctgtacttcgtccacactcaactcccagtgagacctgtctttgcatca 740533
Query: 421 tcgattggtttaggtat 437
|| ||||||||||||||
Sbjct: 740532 tctattggtttaggtat 740516
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 337 atgaagagtggaagccagaaatcctcagcc 366
||||||||||||||||||||||||| ||||
Sbjct: 740634 atgaagagtggaagccagaaatccttagcc 740605
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 97.6 bits (49), Expect = 6e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 453 tgtcggtgatggggtcgcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgt 512
||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 10925438 tgtcggtcatgggatctcgcttcaagaagtccgggaagatattcccagctggtgtcgttt 10925379
Query: 513 cccatgtatccctggtcatggtcgg 537
||| || ||| |||||||||||||
Sbjct: 10925378 ccctcgtctccttggtcatggtcgg 10925354
Score = 77.8 bits (39), Expect = 6e-012
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 10925648 tcagccctggtcctgtacttcgtccacactcaactcccagtgagacctgtctttgcatca 10925589
Query: 421 tcgattggtttaggtat 437
|| ||||||||||||||
Sbjct: 10925588 tctattggtttaggtat 10925572
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 337 atgaagagtggaagccagaaatcctcagcc 366
||||||||||||||||||||||||| ||||
Sbjct: 10925690 atgaagagtggaagccagaaatccttagcc 10925661
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 97.6 bits (49), Expect = 6e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 453 tgtcggtgatggggtcgcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgt 512
||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 30069537 tgtcggtcatgggatctcgcttcaagaagtccgggaagatattcccagctggtgtcgttt 30069478
Query: 513 cccatgtatccctggtcatggtcgg 537
||| || ||| |||||||||||||
Sbjct: 30069477 ccctcgtctccttggtcatggtcgg 30069453
Score = 77.8 bits (39), Expect = 6e-012
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 30069747 tcagccctggtcctgtacttcgtccacactcaactcccagtgagacctgtctttgcatca 30069688
Query: 421 tcgattggtttaggtat 437
|| ||||||||||||||
Sbjct: 30069687 tctattggtttaggtat 30069671
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 337 atgaagagtggaagccagaaatcctcagcc 366
||||||||||||||||||||||||| ||||
Sbjct: 30069789 atgaagagtggaagccagaaatccttagcc 30069760
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
complete sequence
Length = 151506
Score = 97.6 bits (49), Expect = 6e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 453 tgtcggtgatggggtcgcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgt 512
||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 117615 tgtcggtcatgggatctcgcttcaagaagtccgggaagatattcccagctggtgtcgttt 117556
Query: 513 cccatgtatccctggtcatggtcgg 537
||| || ||| |||||||||||||
Sbjct: 117555 ccctcgtctccttggtcatggtcgg 117531
Score = 77.8 bits (39), Expect = 6e-012
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 117825 tcagccctggtcctgtacttcgtccacactcaactcccagtgagacctgtctttgcatca 117766
Query: 421 tcgattggtttaggtat 437
|| ||||||||||||||
Sbjct: 117765 tctattggtttaggtat 117749
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 337 atgaagagtggaagccagaaatcctcagcc 366
||||||||||||||||||||||||| ||||
Sbjct: 117867 atgaagagtggaagccagaaatccttagcc 117838
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 97.6 bits (49), Expect = 6e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 453 tgtcggtgatggggtcgcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgt 512
||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 33345354 tgtcggtcatgggatctcgcttcaagaagtccgggaagatattcccagctggtgtcgttt 33345295
Query: 513 cccatgtatccctggtcatggtcgg 537
||| || ||| |||||||||||||
Sbjct: 33345294 ccctcgtctccttggtcatggtcgg 33345270
Score = 77.8 bits (39), Expect = 6e-012
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 361 tcagccctggtcctgtacttcgtccacactcaactcccnnnnnnnnnngtctttgcatcg 420
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 33345564 tcagccctggtcctgtacttcgtccacactcaactcccagtgagacctgtctttgcatca 33345505
Query: 421 tcgattggtttaggtat 437
|| ||||||||||||||
Sbjct: 33345504 tctattggtttaggtat 33345488
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 337 atgaagagtggaagccagaaatcctcagcc 366
||||||||||||||||||||||||| ||||
Sbjct: 33345606 atgaagagtggaagccagaaatccttagcc 33345577
>gb|CF196302.1|CF196302 Azvi2.1_C04 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.1C04 5', mRNA sequence
Length = 571
Score = 89.7 bits (45), Expect = 2e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 231 aagaacataacagggctggtcgaagcttttgctaagtgcgctaagctgagggagctggta 290
||||||||||||||| |||| ||||||| |||||| ||||| ||||||||||||||||
Sbjct: 14 aagaacataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggta 73
Query: 291 aaccttgtcgtcgttgc 307
||||||||||| |||||
Sbjct: 74 aaccttgtcgtggttgc 90
>gb|CB641006.1|CB641006 OSJNEa17G16.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa17G16 5', mRNA sequence
Length = 601
Score = 87.7 bits (44), Expect = 6e-015
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 517 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 576
Query: 67 tgtccatatactttcc 82
|||| |||||||||||
Sbjct: 577 tgtctatatactttcc 592
>gb|CB645602.1|CB645602 OSJNEb07G15.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07G15 5', mRNA sequence
Length = 556
Score = 87.7 bits (44), Expect = 6e-015
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 7 ttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgaca 66
||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 473 ttgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagaca 532
Query: 67 tgtccatatactttcc 82
|||| |||||||||||
Sbjct: 533 tgtctatatactttcc 548
>gb|CA997874.1|CA997874 S234B1_H11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 644
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||||
Sbjct: 260 gttgtccatggtatcgatgtctttgaccccaagttcaacatcgtctctcctggtgctgac 319
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 320 atgtccatctactt 333
>gb|L03366.1|RICRSS3 Oryza sativa sucrose synthase 3 (RSs3) gene, complete cds
Length = 4586
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||||
Sbjct: 3032 gttgtccatggtatcgatgtctttgaccccaagttcaacatcgtctctcctggtgctgac 3091
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 3092 atgtccatctactt 3105
>dbj|AK100306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078G01, full
insert sequence
Length = 2771
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||||
Sbjct: 1629 gttgtccatggtatcgatgtctttgaccccaagttcaacatcgtctctcctggtgctgac 1688
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 1689 atgtccatctactt 1702
>dbj|AP004308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0552F09
Length = 134659
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||||
Sbjct: 3765 gttgtccatggtatcgatgtctttgaccccaagttcaacatcgtctctcctggtgctgac 3824
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 3825 atgtccatctactt 3838
>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1056G08
Length = 168173
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||||
Sbjct: 73138 gttgtccatggtatcgatgtctttgaccccaagttcaacatcgtctctcctggtgctgac 73197
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 73198 atgtccatctactt 73211
>gb|AACV01016794.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016794, whole
genome shotgun sequence
Length = 30800
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||||
Sbjct: 15701 gttgtccatggtatcgatgtctttgaccccaagttcaacatcgtctctcctggtgctgac 15760
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 15761 atgtccatctactt 15774
>ref|NM_189807.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 2771
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||||
Sbjct: 1629 gttgtccatggtatcgatgtctttgaccccaagttcaacatcgtctctcctggtgctgac 1688
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 1689 atgtccatctactt 1702
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||||
Sbjct: 12993053 gttgtccatggtatcgatgtctttgaccccaagttcaacatcgtctctcctggtgctgac 12993112
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 12993113 atgtccatctactt 12993126
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 302 cgttgcaacgcacgggcactcagctagt 329
||||| ||||||||||||||||||||||
Sbjct: 3761462 cgttgtaacgcacgggcactcagctagt 3761435
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||||
Sbjct: 10841940 gttgtccatggtatcgatgtctttgaccccaagttcaacatcgtctctcctggtgctgac 10841999
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 10842000 atgtccatctactt 10842013
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 302 cgttgcaacgcacgggcactcagctagt 329
||||| ||||||||||||||||||||||
Sbjct: 1873596 cgttgtaacgcacgggcactcagctagt 1873569
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||||
Sbjct: 24241379 gttgtccatggtatcgatgtctttgaccccaagttcaacatcgtctctcctggtgctgac 24241438
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 24241439 atgtccatctactt 24241452
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 302 cgttgcaacgcacgggcactcagctagt 329
||||| ||||||||||||||||||||||
Sbjct: 15273035 cgttgtaacgcacgggcactcagctagt 15273008
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 302 cgttgcaacgcacgggcactcagctagtggga 333
|||||||||||||||||||| | |||||||||
Sbjct: 6961863 cgttgcaacgcacgggcacttaactagtggga 6961832
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||||
Sbjct: 25380048 gttgtccatggtatcgatgtctttgaccccaagttcaacatcgtctctcctggtgctgac 25380107
Query: 66 atgtccatatactt 79
|||||||| |||||
Sbjct: 25380108 atgtccatctactt 25380121
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 302 cgttgcaacgcacgggcactcagctagt 329
||||| ||||||||||||||||||||||
Sbjct: 16138387 cgttgtaacgcacgggcactcagctagt 16138360
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 302 cgttgcaacgcacgggcactcagctagtggga 333
|||||||||||||||||||| | |||||||||
Sbjct: 7073469 cgttgcaacgcacgggcacttaactagtggga 7073438
>gb|AU174261.1|AU174261 AU174261 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2553, mRNA sequence
Length = 452
Score = 77.8 bits (39), Expect = 6e-012
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 461 atggggtcgcgcttcaagaagtccgggaagatgttcccagctggtgtcgtgtcccatgta 520
||||| || |||||||| ||||||||||| || ||||||||||||||||| |||| ||
Sbjct: 4 atgggatctcgcttcaanaagtccgggaanatattcccagctggtgtcgtttccctcgtc 63
Query: 521 tccctggtcatggtcgg 537
||| |||||||||||||
Sbjct: 64 tccttggtcatggtcgg 80
>dbj|AG022513.1| Oryza sativa (japonica cultivar-group) DNA, clone:T04961T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2401, genomic survey sequence
Length = 617
Score = 71.9 bits (36), Expect = 4e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||||||||| ||||| || ||||| || ||||| |||||||| || |||||||||||||
Sbjct: 251 accgagttgtgcatggcatagatgtttttgatcccaagttcaacattgtctctcctggag 192
Query: 61 ctgacatg 68
||||||||
Sbjct: 191 ctgacatg 184
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 662,170
Number of Sequences: 438736
Number of extensions: 662170
Number of successful extensions: 20705
Number of sequences better than 0.5: 151
Number of HSP's better than 0.5 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17893
Number of HSP's gapped (non-prelim): 2808
length of query: 589
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 568
effective length of database: 2,791,206,460
effective search space: 1585405269280
effective search space used: 1585405269280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)