BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198833.2.1
(593 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK121454.1| Oryza sativa (japonica cultivar-group) cDNA... 763 0.0
gb|AACV01009904.1| Oryza sativa (japonica cultivar-group) c... 763 0.0
ref|XM_472740.1| Oryza sativa (japonica cultivar-group), p... 763 0.0
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 763 0.0
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 763 0.0
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 763 0.0
emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromoso... 763 0.0
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 763 0.0
gb|C98771.1|C98771 C98771 Rice panicle at flowering stage O... 504 e-140
gb|AZ128741.1|AZ128741 OSJNBb0099L14r CUGI Rice BAC Library... 153 1e-034
dbj|AK100257.1| Oryza sativa (japonica cultivar-group) cDNA... 145 3e-032
gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) c... 145 3e-032
ref|XM_474065.1| Oryza sativa (japonica cultivar-group), p... 145 3e-032
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 145 3e-032
emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromoso... 145 3e-032
emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromoso... 145 3e-032
dbj|AK072779.1| Oryza sativa (japonica cultivar-group) cDNA... 115 3e-023
dbj|AP003798.3| Oryza sativa (japonica cultivar-group) geno... 115 3e-023
gb|AACV01018605.1| Oryza sativa (japonica cultivar-group) c... 115 3e-023
ref|XM_482698.1| Oryza sativa (japonica cultivar-group), mRNA 115 3e-023
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 115 3e-023
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 115 3e-023
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 115 3e-023
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 115 3e-023
dbj|AK072369.1| Oryza sativa (japonica cultivar-group) cDNA... 94 1e-016
dbj|AP005551.3| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
gb|AACV01020049.1| Oryza sativa (japonica cultivar-group) c... 94 1e-016
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 94 1e-016
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
dbj|AK070513.1| Oryza sativa (japonica cultivar-group) cDNA... 92 4e-016
gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbar... 92 4e-016
gb|AACV01006428.1| Oryza sativa (japonica cultivar-group) c... 92 4e-016
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 92 4e-016
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 92 4e-016
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 92 4e-016
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 92 4e-016
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 92 4e-016
dbj|AK105998.1| Oryza sativa (japonica cultivar-group) cDNA... 86 2e-014
dbj|AP003722.3| Oryza sativa (japonica cultivar-group) geno... 86 2e-014
gb|AACV01000869.1| Oryza sativa (japonica cultivar-group) c... 86 2e-014
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 86 2e-014
ref|NM_183704.1| Oryza sativa (japonica cultivar-group), p... 86 2e-014
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 86 2e-014
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 86 2e-014
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 86 2e-014
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 86 2e-014
gb|C97105.1|C97105 C97105 Rice callus Oryza sativa (japonic... 84 1e-013
dbj|AK071728.1| Oryza sativa (japonica cultivar-group) cDNA... 84 1e-013
gb|AACV01017055.1| Oryza sativa (japonica cultivar-group) c... 84 1e-013
ref|XM_479611.1| Oryza sativa (japonica cultivar-group), mRNA 84 1e-013
dbj|AP004316.4| Oryza sativa (japonica cultivar-group) geno... 84 1e-013
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 84 1e-013
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 84 1e-013
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 84 1e-013
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 84 1e-013
dbj|AK058651.1| Oryza sativa (japonica cultivar-group) cDNA... 82 4e-013
gb|AACV01018600.1| Oryza sativa (japonica cultivar-group) c... 82 4e-013
ref|XM_482697.1| Oryza sativa (japonica cultivar-group), mRNA 82 4e-013
dbj|AK107006.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
gb|AACV01000866.1| Oryza sativa (japonica cultivar-group) c... 80 2e-012
ref|NM_183700.1| Oryza sativa (japonica cultivar-group), p... 80 2e-012
dbj|AG211559.1| Oryza sativa (japonica cultivar-group) DNA,... 78 6e-012
dbj|AK069492.1| Oryza sativa (japonica cultivar-group) cDNA... 78 6e-012
dbj|AK107457.1| Oryza sativa (japonica cultivar-group) cDNA... 78 6e-012
gb|AACV01006830.1| Oryza sativa (japonica cultivar-group) c... 78 6e-012
ref|XM_470886.1| Oryza sativa (japonica cultivar-group), mRNA 78 6e-012
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 78 6e-012
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
gb|AC091787.6| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
dbj|AP000570.1| Oryza sativa (japonica cultivar-group) geno... 74 9e-011
gb|AACV01000591.1| Oryza sativa (japonica cultivar-group) c... 74 9e-011
ref|NM_187890.1| Oryza sativa (japonica cultivar-group), Oz... 74 9e-011
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 74 9e-011
dbj|AP000492.1| Oryza sativa (japonica cultivar-group) geno... 74 9e-011
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 74 9e-011
dbj|AK100947.1| Oryza sativa (japonica cultivar-group) cDNA... 70 1e-009
gb|AC134348.2| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
ref|NT_107141.1| Oryza sativa (japonica cultivar-group) 70 1e-009
gb|AC135929.2| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|AACV01011953.1| Oryza sativa (japonica cultivar-group) c... 70 1e-009
gb|AACV01022444.1| Oryza sativa (japonica cultivar-group) c... 70 1e-009
ref|XM_475113.1| Oryza sativa (japonica cultivar-group), p... 70 1e-009
ref|NT_107210.1| Oryza sativa (japonica cultivar-group) 70 1e-009
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|CH401205.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
gb|AC123897.3| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|AC128643.3| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
dbj|AK101251.1| Oryza sativa (japonica cultivar-group) cDNA... 68 6e-009
dbj|AP004343.2| Oryza sativa (japonica cultivar-group) geno... 68 6e-009
dbj|AP006268.4| Oryza sativa (japonica cultivar-group) geno... 68 6e-009
gb|AACV01017005.1| Oryza sativa (japonica cultivar-group) c... 68 6e-009
ref|XM_479497.1| Oryza sativa (japonica cultivar-group), mRNA 68 6e-009
dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chro... 58 6e-006
dbj|AK101962.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
dbj|AK105682.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
gb|AACV01002791.1| Oryza sativa (japonica cultivar-group) c... 58 6e-006
gb|AACV01002792.1| Oryza sativa (japonica cultivar-group) c... 58 6e-006
ref|NM_190160.1| Oryza sativa (japonica cultivar-group), p... 58 6e-006
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 58 6e-006
dbj|AP003227.3| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|AACV01000523.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|NM_188648.1| Oryza sativa (japonica cultivar-group), Oz... 56 2e-005
dbj|AP002481.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
dbj|AK107019.1| Oryza sativa (japonica cultivar-group) cDNA... 54 9e-005
dbj|AP004168.3| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
gb|AACV01003929.1| Oryza sativa (japonica cultivar-group) c... 54 9e-005
ref|XM_465003.1| Oryza sativa (japonica cultivar-group), mRNA 54 9e-005
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 54 9e-005
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
dbj|AP005710.1| Oryza sativa (japonica cultivar-group) chro... 52 3e-004
gb|AACV01020493.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 52 3e-004
dbj|AP005862.2| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
dbj|AK105110.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
dbj|AP004849.3| Oryza sativa (japonica cultivar-group) geno... 50 0.001
ref|XM_468128.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.001
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 50 0.001
gb|AU172636.1|AU172636 AU172636 Rice panicle at flowering s... 48 0.005
gb|CB651164.1|CB651164 OSJNEb16A10.r OSJNEb Oryza sativa (j... 48 0.005
gb|CV723475.1|CV723475 root--03-L02.g1 Rice root lambda pha... 48 0.005
dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
dbj|AP003345.3| Oryza sativa (japonica cultivar-group) geno... 48 0.005
gb|AACV01002476.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
ref|NM_190847.1| Oryza sativa (japonica cultivar-group), p... 48 0.005
gb|AU076010.1|AU076010 AU076010 Rice callus Oryza sativa (j... 46 0.021
gb|AACV01005539.1| Oryza sativa (japonica cultivar-group) c... 44 0.084
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.084
gb|AZ134216.1|AZ134216 OSJNBb0110C23r CUGI Rice BAC Library... 42 0.33
gb|CF323944.1|CF323944 HDN--05-D03.g1 OsHDAC1-overexpressin... 42 0.33
dbj|AK101494.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.33
gb|AC027657.2|AC027657 Oryza sativa (japonica cultivar-grou... 42 0.33
gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, ... 42 0.33
gb|AACV01021515.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
ref|NM_196427.1| Oryza sativa (japonica cultivar-group) put... 42 0.33
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 42 0.33
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 42 0.33
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
>dbj|AK121454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142P03, full
insert sequence
Length = 2002
Score = 763 bits (385), Expect = 0.0
Identities = 541/593 (91%)
Strand = Plus / Plus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcag 60
||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||| | |
Sbjct: 1062 atggggttccacaacaccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaac 1121
Query: 61 ggagacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 120
|| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1122 ggcgacctcggggccttctacaactgccggttcgacgcgttccaggacaccctgtacgtg 1181
Query: 121 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccattgacttcatcttc 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1182 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccatcgacttcatcttc 1241
Query: 181 ggcaactcggcggcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaac 240
|||||||| || || || |||||||||||||||||| |||| || || ||||||||||||
Sbjct: 1242 ggcaactccgccgccgtcttccagaactgcctcatcatcacccgccgccccatggacaac 1301
Query: 241 cagcagaactcggtgaccgcgcacggccgcacggaccccaacatgaagtcggggctcgtc 300
||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 1302 cagcagaactcggtgacggcgcacggccgcaccgaccccaacatgaagtccggcctcgtc 1361
Query: 301 atccagaactgccgcctggtgcccgaccagaagctcttccccgaccgcttcaagatcccc 360
||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 1362 atccagaactgccgcctcgtgcccgaccagaagctcttcccggacaggttcaagatcccc 1421
Query: 361 tcgtacctgggccgaccctggaaggagttctcgcgcctcgtcatcatggagagcaccatc 420
|| ||||| ||||| || |||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 1422 tcctacctcggccgcccatggaaggagtactcccgcctcgtcatcatggagagcaccatc 1481
Query: 421 gccgacttcatcaagcccgagggctacatgccctggaacggcgacttcggcatcaagacg 480
||||||||||||||||| |||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 1482 gccgacttcatcaagccggagggctacatgccatggaacggcgaattcgcgctcaacacg 1541
Query: 481 ctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtcacc 540
|||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |
Sbjct: 1542 ctctactacgccgagttcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaac 1601
Query: 541 tggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccgg 593
||| ||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct: 1602 tggaaggggttccgcgtcatcggccagaaggaggccgagcagttcaccgccgg 1654
>gb|AACV01009904.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009904, whole
genome shotgun sequence
Length = 51710
Score = 763 bits (385), Expect = 0.0
Identities = 541/593 (91%)
Strand = Plus / Minus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcag 60
||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||| | |
Sbjct: 37168 atggggttccacaacaccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaac 37109
Query: 61 ggagacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 120
|| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 37108 ggcgacctcggggccttctacaactgccggttcgacgcgttccaggacaccctgtacgtg 37049
Query: 121 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccattgacttcatcttc 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 37048 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccatcgacttcatcttc 36989
Query: 181 ggcaactcggcggcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaac 240
|||||||| || || || |||||||||||||||||| |||| || || ||||||||||||
Sbjct: 36988 ggcaactccgccgccgtcttccagaactgcctcatcatcacccgccgccccatggacaac 36929
Query: 241 cagcagaactcggtgaccgcgcacggccgcacggaccccaacatgaagtcggggctcgtc 300
||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 36928 cagcagaactcggtgacggcgcacggccgcaccgaccccaacatgaagtccggcctcgtc 36869
Query: 301 atccagaactgccgcctggtgcccgaccagaagctcttccccgaccgcttcaagatcccc 360
||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 36868 atccagaactgccgcctcgtgcccgaccagaagctcttcccggacaggttcaagatcccc 36809
Query: 361 tcgtacctgggccgaccctggaaggagttctcgcgcctcgtcatcatggagagcaccatc 420
|| ||||| ||||| || |||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 36808 tcctacctcggccgcccatggaaggagtactcccgcctcgtcatcatggagagcaccatc 36749
Query: 421 gccgacttcatcaagcccgagggctacatgccctggaacggcgacttcggcatcaagacg 480
||||||||||||||||| |||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 36748 gccgacttcatcaagccggagggctacatgccatggaacggcgaattcgcgctcaacacg 36689
Query: 481 ctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtcacc 540
|||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |
Sbjct: 36688 ctctactacgccgagttcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaac 36629
Query: 541 tggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccgg 593
||| ||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct: 36628 tggaaggggttccgcgtcatcggccagaaggaggccgagcagttcaccgccgg 36576
>ref|XM_472740.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1707
Score = 763 bits (385), Expect = 0.0
Identities = 541/593 (91%)
Strand = Plus / Plus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcag 60
||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||| | |
Sbjct: 1045 atggggttccacaacaccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaac 1104
Query: 61 ggagacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 120
|| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1105 ggcgacctcggggccttctacaactgccggttcgacgcgttccaggacaccctgtacgtg 1164
Query: 121 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccattgacttcatcttc 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1165 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccatcgacttcatcttc 1224
Query: 181 ggcaactcggcggcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaac 240
|||||||| || || || |||||||||||||||||| |||| || || ||||||||||||
Sbjct: 1225 ggcaactccgccgccgtcttccagaactgcctcatcatcacccgccgccccatggacaac 1284
Query: 241 cagcagaactcggtgaccgcgcacggccgcacggaccccaacatgaagtcggggctcgtc 300
||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 1285 cagcagaactcggtgacggcgcacggccgcaccgaccccaacatgaagtccggcctcgtc 1344
Query: 301 atccagaactgccgcctggtgcccgaccagaagctcttccccgaccgcttcaagatcccc 360
||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 1345 atccagaactgccgcctcgtgcccgaccagaagctcttcccggacaggttcaagatcccc 1404
Query: 361 tcgtacctgggccgaccctggaaggagttctcgcgcctcgtcatcatggagagcaccatc 420
|| ||||| ||||| || |||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 1405 tcctacctcggccgcccatggaaggagtactcccgcctcgtcatcatggagagcaccatc 1464
Query: 421 gccgacttcatcaagcccgagggctacatgccctggaacggcgacttcggcatcaagacg 480
||||||||||||||||| |||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 1465 gccgacttcatcaagccggagggctacatgccatggaacggcgaattcgcgctcaacacg 1524
Query: 481 ctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtcacc 540
|||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |
Sbjct: 1525 ctctactacgccgagttcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaac 1584
Query: 541 tggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccgg 593
||| ||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct: 1585 tggaaggggttccgcgtcatcggccagaaggaggccgagcagttcaccgccgg 1637
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 763 bits (385), Expect = 0.0
Identities = 541/593 (91%)
Strand = Plus / Minus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcag 60
||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||| | |
Sbjct: 489774 atggggttccacaacaccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaac 489715
Query: 61 ggagacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 120
|| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 489714 ggcgacctcggggccttctacaactgccggttcgacgcgttccaggacaccctgtacgtg 489655
Query: 121 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccattgacttcatcttc 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 489654 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccatcgacttcatcttc 489595
Query: 181 ggcaactcggcggcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaac 240
|||||||| || || || |||||||||||||||||| |||| || || ||||||||||||
Sbjct: 489594 ggcaactccgccgccgtcttccagaactgcctcatcatcacccgccgccccatggacaac 489535
Query: 241 cagcagaactcggtgaccgcgcacggccgcacggaccccaacatgaagtcggggctcgtc 300
||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 489534 cagcagaactcggtgacggcgcacggccgcaccgaccccaacatgaagtccggcctcgtc 489475
Query: 301 atccagaactgccgcctggtgcccgaccagaagctcttccccgaccgcttcaagatcccc 360
||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 489474 atccagaactgccgcctcgtgcccgaccagaagctcttcccggacaggttcaagatcccc 489415
Query: 361 tcgtacctgggccgaccctggaaggagttctcgcgcctcgtcatcatggagagcaccatc 420
|| ||||| ||||| || |||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 489414 tcctacctcggccgcccatggaaggagtactcccgcctcgtcatcatggagagcaccatc 489355
Query: 421 gccgacttcatcaagcccgagggctacatgccctggaacggcgacttcggcatcaagacg 480
||||||||||||||||| |||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 489354 gccgacttcatcaagccggagggctacatgccatggaacggcgaattcgcgctcaacacg 489295
Query: 481 ctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtcacc 540
|||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |
Sbjct: 489294 ctctactacgccgagttcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaac 489235
Query: 541 tggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccgg 593
||| ||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct: 489234 tggaaggggttccgcgtcatcggccagaaggaggccgagcagttcaccgccgg 489182
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027
genomic scaffold, whole genome shotgun sequence
Length = 13167135
Score = 763 bits (385), Expect = 0.0
Identities = 541/593 (91%)
Strand = Plus / Minus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcag 60
||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||| | |
Sbjct: 765194 atggggttccacaacaccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaac 765135
Query: 61 ggagacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 120
|| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 765134 ggcgacctcggggccttctacaactgccggttcgacgcgttccaggacaccctgtacgtg 765075
Query: 121 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccattgacttcatcttc 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 765074 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccatcgacttcatcttc 765015
Query: 181 ggcaactcggcggcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaac 240
|||||||| || || || |||||||||||||||||| |||| || || ||||||||||||
Sbjct: 765014 ggcaactccgccgccgtcttccagaactgcctcatcatcacccgccgccccatggacaac 764955
Query: 241 cagcagaactcggtgaccgcgcacggccgcacggaccccaacatgaagtcggggctcgtc 300
||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 764954 cagcagaactcggtgacggcgcacggccgcaccgaccccaacatgaagtccggcctcgtc 764895
Query: 301 atccagaactgccgcctggtgcccgaccagaagctcttccccgaccgcttcaagatcccc 360
||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 764894 atccagaactgccgcctcgtgcccgaccagaagctcttcccggacaggttcaagatcccc 764835
Query: 361 tcgtacctgggccgaccctggaaggagttctcgcgcctcgtcatcatggagagcaccatc 420
|| ||||| ||||| || |||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 764834 tcctacctcggccgcccatggaaggagtactcccgcctcgtcatcatggagagcaccatc 764775
Query: 421 gccgacttcatcaagcccgagggctacatgccctggaacggcgacttcggcatcaagacg 480
||||||||||||||||| |||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 764774 gccgacttcatcaagccggagggctacatgccatggaacggcgaattcgcgctcaacacg 764715
Query: 481 ctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtcacc 540
|||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |
Sbjct: 764714 ctctactacgccgagttcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaac 764655
Query: 541 tggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccgg 593
||| ||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct: 764654 tggaaggggttccgcgtcatcggccagaaggaggccgagcagttcaccgccgg 764602
Score = 145 bits (73), Expect = 3e-032
Identities = 223/273 (81%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| || ||||| ||||||||||||||||||| | ||| ||||| ||| | ||
Sbjct: 10345876 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 10345935
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
| ||||| ||||||| |||||| | || ||||||||||||||||||||||||| |
Sbjct: 10345936 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 10345995
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
||||||||||| ||||||| | | || ||||| |||| |||||||||||||||||||
Sbjct: 10345996 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 10346055
Query: 193 gcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaaccagcagaactcg 252
||||||||||||| ||||||||| |||| ||| |||||||||||| |||| |
Sbjct: 10346056 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 10346115
Query: 253 gtgaccgcgcacggccgcacggaccccaacatg 285
||||| |||||||| ||||| ||||||||||||
Sbjct: 10346116 gtgacggcgcacgggcgcaccgaccccaacatg 10346148
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 473 tcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaaga 532
|||||||||||||||||||||||||| |||| ||| || ||||||||||| |||||||
Sbjct: 10346336 tcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaaga 10346395
Query: 533 gggtcacctggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccg 592
|||| || ||||| || | || ||||||||||| | || ||| ||||||||||||||
Sbjct: 10346396 gggtgacgtggccgggataccgcgtcatcggccaggccgaggccacgcagttcaccgccg 10346455
Query: 593 g 593
|
Sbjct: 10346456 g 10346456
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 406 atggagagcaccatcgccgacttcatcaagcccgaggg 443
||||||||| ||||| ||||||||||||||| |||||
Sbjct: 10346269 atggagagcgtcatcggcgacttcatcaagccggaggg 10346306
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 763 bits (385), Expect = 0.0
Identities = 541/593 (91%)
Strand = Plus / Minus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcag 60
||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||| | |
Sbjct: 19909293 atggggttccacaacaccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaac 19909234
Query: 61 ggagacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 120
|| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 19909233 ggcgacctcggggccttctacaactgccggttcgacgcgttccaggacaccctgtacgtg 19909174
Query: 121 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccattgacttcatcttc 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 19909173 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccatcgacttcatcttc 19909114
Query: 181 ggcaactcggcggcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaac 240
|||||||| || || || |||||||||||||||||| |||| || || ||||||||||||
Sbjct: 19909113 ggcaactccgccgccgtcttccagaactgcctcatcatcacccgccgccccatggacaac 19909054
Query: 241 cagcagaactcggtgaccgcgcacggccgcacggaccccaacatgaagtcggggctcgtc 300
||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 19909053 cagcagaactcggtgacggcgcacggccgcaccgaccccaacatgaagtccggcctcgtc 19908994
Query: 301 atccagaactgccgcctggtgcccgaccagaagctcttccccgaccgcttcaagatcccc 360
||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 19908993 atccagaactgccgcctcgtgcccgaccagaagctcttcccggacaggttcaagatcccc 19908934
Query: 361 tcgtacctgggccgaccctggaaggagttctcgcgcctcgtcatcatggagagcaccatc 420
|| ||||| ||||| || |||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 19908933 tcctacctcggccgcccatggaaggagtactcccgcctcgtcatcatggagagcaccatc 19908874
Query: 421 gccgacttcatcaagcccgagggctacatgccctggaacggcgacttcggcatcaagacg 480
||||||||||||||||| |||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 19908873 gccgacttcatcaagccggagggctacatgccatggaacggcgaattcgcgctcaacacg 19908814
Query: 481 ctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtcacc 540
|||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |
Sbjct: 19908813 ctctactacgccgagttcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaac 19908754
Query: 541 tggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccgg 593
||| ||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct: 19908753 tggaaggggttccgcgtcatcggccagaaggaggccgagcagttcaccgccgg 19908701
Score = 145 bits (73), Expect = 3e-032
Identities = 223/273 (81%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| || ||||| ||||||||||||||||||| | ||| ||||| ||| | ||
Sbjct: 29489975 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 29490034
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
| ||||| ||||||| |||||| | || ||||||||||||||||||||||||| |
Sbjct: 29490035 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 29490094
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
||||||||||| ||||||| | | || ||||| |||| |||||||||||||||||||
Sbjct: 29490095 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 29490154
Query: 193 gcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaaccagcagaactcg 252
||||||||||||| ||||||||| |||| ||| |||||||||||| |||| |
Sbjct: 29490155 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 29490214
Query: 253 gtgaccgcgcacggccgcacggaccccaacatg 285
||||| |||||||| ||||| ||||||||||||
Sbjct: 29490215 gtgacggcgcacgggcgcaccgaccccaacatg 29490247
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 473 tcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaaga 532
|||||||||||||||||||||||||| |||| ||| || ||||||||||| |||||||
Sbjct: 29490435 tcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaaga 29490494
Query: 533 gggtcacctggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccg 592
|||| || ||||| || | || ||||||||||| | || ||| ||||||||||||||
Sbjct: 29490495 gggtgacgtggccgggataccgcgtcatcggccaggccgaggccacgcagttcaccgccg 29490554
Query: 593 g 593
|
Sbjct: 29490555 g 29490555
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 406 atggagagcaccatcgccgacttcatcaagcccgaggg 443
||||||||| ||||| ||||||||||||||| |||||
Sbjct: 29490368 atggagagcgtcatcggcgacttcatcaagccggaggg 29490405
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21,
complete sequence
Length = 138969
Score = 763 bits (385), Expect = 0.0
Identities = 541/593 (91%)
Strand = Plus / Minus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcag 60
||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||| | |
Sbjct: 94796 atggggttccacaacaccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaac 94737
Query: 61 ggagacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 120
|| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 94736 ggcgacctcggggccttctacaactgccggttcgacgcgttccaggacaccctgtacgtg 94677
Query: 121 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccattgacttcatcttc 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 94676 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccatcgacttcatcttc 94617
Query: 181 ggcaactcggcggcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaac 240
|||||||| || || || |||||||||||||||||| |||| || || ||||||||||||
Sbjct: 94616 ggcaactccgccgccgtcttccagaactgcctcatcatcacccgccgccccatggacaac 94557
Query: 241 cagcagaactcggtgaccgcgcacggccgcacggaccccaacatgaagtcggggctcgtc 300
||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 94556 cagcagaactcggtgacggcgcacggccgcaccgaccccaacatgaagtccggcctcgtc 94497
Query: 301 atccagaactgccgcctggtgcccgaccagaagctcttccccgaccgcttcaagatcccc 360
||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 94496 atccagaactgccgcctcgtgcccgaccagaagctcttcccggacaggttcaagatcccc 94437
Query: 361 tcgtacctgggccgaccctggaaggagttctcgcgcctcgtcatcatggagagcaccatc 420
|| ||||| ||||| || |||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 94436 tcctacctcggccgcccatggaaggagtactcccgcctcgtcatcatggagagcaccatc 94377
Query: 421 gccgacttcatcaagcccgagggctacatgccctggaacggcgacttcggcatcaagacg 480
||||||||||||||||| |||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 94376 gccgacttcatcaagccggagggctacatgccatggaacggcgaattcgcgctcaacacg 94317
Query: 481 ctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtcacc 540
|||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |
Sbjct: 94316 ctctactacgccgagttcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaac 94257
Query: 541 tggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccgg 593
||| ||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct: 94256 tggaaggggttccgcgtcatcggccagaaggaggccgagcagttcaccgccgg 94204
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 763 bits (385), Expect = 0.0
Identities = 541/593 (91%)
Strand = Plus / Minus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcag 60
||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||| | |
Sbjct: 22886021 atggggttccacaacaccgccggcgcggagcggcaccaggcggtggcgctgcgcatcaac 22885962
Query: 61 ggagacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 120
|| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 22885961 ggcgacctcggggccttctacaactgccggttcgacgcgttccaggacaccctgtacgtg 22885902
Query: 121 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccattgacttcatcttc 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 22885901 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccatcgacttcatcttc 22885842
Query: 181 ggcaactcggcggcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaac 240
|||||||| || || || |||||||||||||||||| |||| || || ||||||||||||
Sbjct: 22885841 ggcaactccgccgccgtcttccagaactgcctcatcatcacccgccgccccatggacaac 22885782
Query: 241 cagcagaactcggtgaccgcgcacggccgcacggaccccaacatgaagtcggggctcgtc 300
||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 22885781 cagcagaactcggtgacggcgcacggccgcaccgaccccaacatgaagtccggcctcgtc 22885722
Query: 301 atccagaactgccgcctggtgcccgaccagaagctcttccccgaccgcttcaagatcccc 360
||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 22885721 atccagaactgccgcctcgtgcccgaccagaagctcttcccggacaggttcaagatcccc 22885662
Query: 361 tcgtacctgggccgaccctggaaggagttctcgcgcctcgtcatcatggagagcaccatc 420
|| ||||| ||||| || |||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 22885661 tcctacctcggccgcccatggaaggagtactcccgcctcgtcatcatggagagcaccatc 22885602
Query: 421 gccgacttcatcaagcccgagggctacatgccctggaacggcgacttcggcatcaagacg 480
||||||||||||||||| |||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 22885601 gccgacttcatcaagccggagggctacatgccatggaacggcgaattcgcgctcaacacg 22885542
Query: 481 ctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtcacc 540
|||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |
Sbjct: 22885541 ctctactacgccgagttcaacaaccgcggccccggcgccggcaccagcaagcgcgtcaac 22885482
Query: 541 tggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccgg 593
||| ||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct: 22885481 tggaaggggttccgcgtcatcggccagaaggaggccgagcagttcaccgccgg 22885429
Score = 145 bits (73), Expect = 3e-032
Identities = 223/273 (81%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| || ||||| ||||||||||||||||||| | ||| ||||| ||| | ||
Sbjct: 32662111 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 32662170
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
| ||||| ||||||| |||||| | || ||||||||||||||||||||||||| |
Sbjct: 32662171 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 32662230
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
||||||||||| ||||||| | | || ||||| |||| |||||||||||||||||||
Sbjct: 32662231 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 32662290
Query: 193 gcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaaccagcagaactcg 252
||||||||||||| ||||||||| |||| ||| |||||||||||| |||| |
Sbjct: 32662291 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 32662350
Query: 253 gtgaccgcgcacggccgcacggaccccaacatg 285
||||| |||||||| ||||| ||||||||||||
Sbjct: 32662351 gtgacggcgcacgggcgcaccgaccccaacatg 32662383
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 473 tcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaaga 532
|||||||||||||||||||||||||| |||| ||| || ||||||||||| |||||||
Sbjct: 32662571 tcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaaga 32662630
Query: 533 gggtcacctggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccg 592
|||| || ||||| || | || ||||||||||| | || ||| ||||||||||||||
Sbjct: 32662631 gggtgacgtggccgggataccgcgtcatcggccaggccgaggccacgcagttcaccgccg 32662690
Query: 593 g 593
|
Sbjct: 32662691 g 32662691
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 406 atggagagcaccatcgccgacttcatcaagcccgaggg 443
||||||||| ||||| ||||||||||||||| |||||
Sbjct: 32662504 atggagagcgtcatcggcgacttcatcaagccggaggg 32662541
>gb|C98771.1|C98771 C98771 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3080_1A, mRNA sequence
Length = 461
Score = 504 bits (254), Expect = e-140
Identities = 398/438 (90%), Gaps = 6/438 (1%)
Strand = Plus / Plus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcag 60
||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| | |
Sbjct: 9 atggggttccacaacaccgccggcgcggac-ggcaccaggcggtggcgctgcgcatcaac 67
Query: 61 ggagacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtg 120
|| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 68 ggcgacctcggggccttctacaactgccggttcgacgcgttccaggacaccctgtacgtg 127
Query: 121 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccattgacttcatcttc 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 128 cacgcccggcgccagttcttccgcaactgcgtcatctccggcaccatcgacttcatcttc 187
Query: 181 ggcaactcggcggcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaac 240
|||||||| || || || |||||||||||||||||| |||| || || ||||||||||||
Sbjct: 188 ggcaactccgccgccgtcttccagaactgcctcatcatcacccgccgccccatggacaac 247
Query: 241 cagcagaactcggtgaccgcgcacggccgcacggaccccaacatgaagtcggggctcgtc 300
||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 248 cagcagaactcggtgacggcgcacggccgcaccgaccccaacatgaagtccggcctcgtc 307
Query: 301 atccagaactgccgcctggtgcccgaccagaagctcttccc-cgaccgcttcaagatccc 359
||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||
Sbjct: 308 atccagaactgccgcctcgtgcccgaccagaagctcttcccgggacaggttcaagatccc 367
Query: 360 ctcgtacct-gggccgaccctggaaggagt-tctcgcgcctcgtca-tcatggagagcac 416
||| ||||| |||||| || |||||||||| || ||| | |||||| |||||||||||||
Sbjct: 368 ctcctacctcgggccgcccatggaaggagtatcccgc-cttcgtcattcatggagagcac 426
Query: 417 catcgccgacttcatcaa 434
||||||||||||||||||
Sbjct: 427 catcgccgacttcatcaa 444
>gb|AZ128741.1|AZ128741 OSJNBb0099L14r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0099L14r, DNA
sequence
Length = 909
Score = 153 bits (77), Expect = 1e-034
Identities = 110/121 (90%)
Strand = Plus / Plus
Query: 473 tcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaaga 532
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3 tcaacacgctctactacgccgagttcaacaaccgcggccccggcgccggcaccagcaagc 62
Query: 533 gggtcacctggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccg 592
| |||| |||| ||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct: 63 gcgtcaactggaaggggttccgcgtcatcggccagaaggaggccgagcagttcaccgccg 122
Query: 593 g 593
|
Sbjct: 123 g 123
>dbj|AK100257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061N09, full
insert sequence
Length = 3236
Score = 145 bits (73), Expect = 3e-032
Identities = 223/273 (81%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| || ||||| ||||||||||||||||||| | ||| ||||| ||| | ||
Sbjct: 2306 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 2365
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
| ||||| ||||||| |||||| | || ||||||||||||||||||||||||| |
Sbjct: 2366 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 2425
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
||||||||||| ||||||| | | || ||||| |||| |||||||||||||||||||
Sbjct: 2426 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 2485
Query: 193 gcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaaccagcagaactcg 252
||||||||||||| ||||||||| |||| ||| |||||||||||| |||| |
Sbjct: 2486 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 2545
Query: 253 gtgaccgcgcacggccgcacggaccccaacatg 285
||||| |||||||| ||||| ||||||||||||
Sbjct: 2546 gtgacggcgcacgggcgcaccgaccccaacatg 2578
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 473 tcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaaga 532
|||||||||||||||||||||||||| |||| ||| || ||||||||||| |||||||
Sbjct: 2766 tcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaaga 2825
Query: 533 gggtcacctggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccg 592
|||| || ||||| || | || ||||||||||| | || ||| ||||||||||||||
Sbjct: 2826 gggtgacgtggccgggataccgcgtcatcggccaggccgaggccacgcagttcaccgccg 2885
Query: 593 g 593
|
Sbjct: 2886 g 2886
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 406 atggagagcaccatcgccgacttcatcaagcccgaggg 443
||||||||| ||||| ||||||||||||||| |||||
Sbjct: 2699 atggagagcgtcatcggcgacttcatcaagccggaggg 2736
>gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010557, whole
genome shotgun sequence
Length = 69660
Score = 145 bits (73), Expect = 3e-032
Identities = 223/273 (81%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| || ||||| ||||||||||||||||||| | ||| ||||| ||| | ||
Sbjct: 55005 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 55064
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
| ||||| ||||||| |||||| | || ||||||||||||||||||||||||| |
Sbjct: 55065 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 55124
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
||||||||||| ||||||| | | || ||||| |||| |||||||||||||||||||
Sbjct: 55125 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 55184
Query: 193 gcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaaccagcagaactcg 252
||||||||||||| ||||||||| |||| ||| |||||||||||| |||| |
Sbjct: 55185 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 55244
Query: 253 gtgaccgcgcacggccgcacggaccccaacatg 285
||||| |||||||| ||||| ||||||||||||
Sbjct: 55245 gtgacggcgcacgggcgcaccgaccccaacatg 55277
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 473 tcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaaga 532
|||||||||||||||||||||||||| |||| ||| || ||||||||||| |||||||
Sbjct: 55465 tcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaaga 55524
Query: 533 gggtcacctggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccg 592
|||| || ||||| || | || ||||||||||| | || ||| ||||||||||||||
Sbjct: 55525 gggtgacgtggccgggataccgcgtcatcggccaggccgaggccacgcagttcaccgccg 55584
Query: 593 g 593
|
Sbjct: 55585 g 55585
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 406 atggagagcaccatcgccgacttcatcaagcccgaggg 443
||||||||| ||||| ||||||||||||||| |||||
Sbjct: 55398 atggagagcgtcatcggcgacttcatcaagccggaggg 55435
>ref|XM_474065.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2916
Score = 145 bits (73), Expect = 3e-032
Identities = 223/273 (81%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| || ||||| ||||||||||||||||||| | ||| ||||| ||| | ||
Sbjct: 2266 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 2325
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
| ||||| ||||||| |||||| | || ||||||||||||||||||||||||| |
Sbjct: 2326 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 2385
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
||||||||||| ||||||| | | || ||||| |||| |||||||||||||||||||
Sbjct: 2386 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 2445
Query: 193 gcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaaccagcagaactcg 252
||||||||||||| ||||||||| |||| ||| |||||||||||| |||| |
Sbjct: 2446 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 2505
Query: 253 gtgaccgcgcacggccgcacggaccccaacatg 285
||||| |||||||| ||||| ||||||||||||
Sbjct: 2506 gtgacggcgcacgggcgcaccgaccccaacatg 2538
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 473 tcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaaga 532
|||||||||||||||||||||||||| |||| ||| || ||||||||||| |||||||
Sbjct: 2726 tcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaaga 2785
Query: 533 gggtcacctggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccg 592
|||| || ||||| || | || ||||||||||| | || ||| ||||||||||||||
Sbjct: 2786 gggtgacgtggccgggataccgcgtcatcggccaggccgaggccacgcagttcaccgccg 2845
Query: 593 g 593
|
Sbjct: 2846 g 2846
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 406 atggagagcaccatcgccgacttcatcaagcccgaggg 443
||||||||| ||||| ||||||||||||||| |||||
Sbjct: 2659 atggagagcgtcatcggcgacttcatcaagccggaggg 2696
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 145 bits (73), Expect = 3e-032
Identities = 223/273 (81%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| || ||||| ||||||||||||||||||| | ||| ||||| ||| | ||
Sbjct: 57132 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 57191
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
| ||||| ||||||| |||||| | || ||||||||||||||||||||||||| |
Sbjct: 57192 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 57251
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
||||||||||| ||||||| | | || ||||| |||| |||||||||||||||||||
Sbjct: 57252 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 57311
Query: 193 gcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaaccagcagaactcg 252
||||||||||||| ||||||||| |||| ||| |||||||||||| |||| |
Sbjct: 57312 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 57371
Query: 253 gtgaccgcgcacggccgcacggaccccaacatg 285
||||| |||||||| ||||| ||||||||||||
Sbjct: 57372 gtgacggcgcacgggcgcaccgaccccaacatg 57404
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 473 tcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaaga 532
|||||||||||||||||||||||||| |||| ||| || ||||||||||| |||||||
Sbjct: 57592 tcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaaga 57651
Query: 533 gggtcacctggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccg 592
|||| || ||||| || | || ||||||||||| | || ||| ||||||||||||||
Sbjct: 57652 gggtgacgtggccgggataccgcgtcatcggccaggccgaggccacgcagttcaccgccg 57711
Query: 593 g 593
|
Sbjct: 57712 g 57712
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 406 atggagagcaccatcgccgacttcatcaagcccgaggg 443
||||||||| ||||| ||||||||||||||| |||||
Sbjct: 57525 atggagagcgtcatcggcgacttcatcaagccggaggg 57562
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
complete sequence
Length = 150416
Score = 145 bits (73), Expect = 3e-032
Identities = 223/273 (81%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| || ||||| ||||||||||||||||||| | ||| ||||| ||| | ||
Sbjct: 21546 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 21605
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
| ||||| ||||||| |||||| | || ||||||||||||||||||||||||| |
Sbjct: 21606 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 21665
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
||||||||||| ||||||| | | || ||||| |||| |||||||||||||||||||
Sbjct: 21666 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 21725
Query: 193 gcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaaccagcagaactcg 252
||||||||||||| ||||||||| |||| ||| |||||||||||| |||| |
Sbjct: 21726 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 21785
Query: 253 gtgaccgcgcacggccgcacggaccccaacatg 285
||||| |||||||| ||||| ||||||||||||
Sbjct: 21786 gtgacggcgcacgggcgcaccgaccccaacatg 21818
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 473 tcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaaga 532
|||||||||||||||||||||||||| |||| ||| || ||||||||||| |||||||
Sbjct: 22006 tcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaaga 22065
Query: 533 gggtcacctggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccg 592
|||| || ||||| || | || ||||||||||| | || ||| ||||||||||||||
Sbjct: 22066 gggtgacgtggccgggataccgcgtcatcggccaggccgaggccacgcagttcaccgccg 22125
Query: 593 g 593
|
Sbjct: 22126 g 22126
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 406 atggagagcaccatcgccgacttcatcaagcccgaggg 443
||||||||| ||||| ||||||||||||||| |||||
Sbjct: 21939 atggagagcgtcatcggcgacttcatcaagccggaggg 21976
>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
complete sequence
Length = 126659
Score = 145 bits (73), Expect = 3e-032
Identities = 223/273 (81%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| || ||||| ||||||||||||||||||| | ||| ||||| ||| | ||
Sbjct: 57132 aacacggcggggccggaggggcaccaggcggtggcgctgcacgtgcagggggacatgtcg 57191
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
| ||||| ||||||| |||||| | || ||||||||||||||||||||||||| |
Sbjct: 57192 gtgttcttcaactgcaagttcgaggggtaccaggacacgctgtacgtgcacgccaacagg 57251
Query: 133 cagttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcg 192
||||||||||| ||||||| | | || ||||| |||| |||||||||||||||||||
Sbjct: 57252 cagttcttccggaactgcgaggtgacggggaccatcgactacatcttcggcaactcggcg 57311
Query: 193 gcggtgttccagaactgcctcatcgtcacgcggcggcccatggacaaccagcagaactcg 252
||||||||||||| ||||||||| |||| ||| |||||||||||| |||| |
Sbjct: 57312 gcggtgttccagagctgcctcatgacggtgcggaagccgatggacaaccaggcgaacatg 57371
Query: 253 gtgaccgcgcacggccgcacggaccccaacatg 285
||||| |||||||| ||||| ||||||||||||
Sbjct: 57372 gtgacggcgcacgggcgcaccgaccccaacatg 57404
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 473 tcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaaga 532
|||||||||||||||||||||||||| |||| ||| || ||||||||||| |||||||
Sbjct: 57592 tcaagacgctctactacgccgagtacgccaacaccgggccaggcgccggcacaagcaaga 57651
Query: 533 gggtcacctggcctgggttccacgtcatcggccggaaggacgccgagcagttcaccgccg 592
|||| || ||||| || | || ||||||||||| | || ||| ||||||||||||||
Sbjct: 57652 gggtgacgtggccgggataccgcgtcatcggccaggccgaggccacgcagttcaccgccg 57711
Query: 593 g 593
|
Sbjct: 57712 g 57712
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 406 atggagagcaccatcgccgacttcatcaagcccgaggg 443
||||||||| ||||| ||||||||||||||| |||||
Sbjct: 57525 atggagagcgtcatcggcgacttcatcaagccggaggg 57562
>dbj|AK072779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141O18, full
insert sequence
Length = 2268
Score = 115 bits (58), Expect = 3e-023
Identities = 105/118 (88%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcc-cggcgccagttcttccgcaactgcgtcatctccg 160
|||||||||||| |||| |||| || |||| ||||||| ||||||||||||||||||||
Sbjct: 1547 ccaggacacgctctacgcgcactccaaggcg-cagttctaccgcaactgcgtcatctccg 1605
Query: 161 gcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatcgt 218
||||| | ||||||||||||||| || | ||||||||||||||||||||| |||||||
Sbjct: 1606 gcaccgtcgacttcatcttcggcgacgccgcggcggtgttccagaactgcgtcatcgt 1663
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgct 50
||||||||| |||||| || ||||||||||||||||||
Sbjct: 1458 aacacggcccgcgcggcgaagcaccaggcggtggcgct 1495
Score = 42.1 bits (21), Expect = 0.33
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||| |||||||||||| |||||||||||| ||||| ||||||
Sbjct: 1902 tggagcggcgacttcgggctcaagacgctctggtacgcggagtac 1946
>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1005_H01
Length = 128124
Score = 115 bits (58), Expect = 3e-023
Identities = 105/118 (88%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcc-cggcgccagttcttccgcaactgcgtcatctccg 160
|||||||||||| |||| |||| || |||| ||||||| ||||||||||||||||||||
Sbjct: 60840 ccaggacacgctctacgcgcactccaaggcg-cagttctaccgcaactgcgtcatctccg 60782
Query: 161 gcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatcgt 218
||||| | ||||||||||||||| || | ||||||||||||||||||||| |||||||
Sbjct: 60781 gcaccgtcgacttcatcttcggcgacgccgcggcggtgttccagaactgcgtcatcgt 60724
Score = 81.8 bits (41), Expect = 4e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||| | | |||||||||| |||| ||||| | |||||||
Sbjct: 59282 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 59341
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccagaactgc 210
|||| | |||||| ||||||||||| | || || |||||||||||||||
Sbjct: 59342 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgc 59390
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgct 50
||||||||| |||||| || ||||||||||||||||||
Sbjct: 60929 aacacggcccgcgcggcgaagcaccaggcggtggcgct 60892
Score = 46.1 bits (23), Expect = 0.021
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||||||||| |||||||| ||| ||| |||||||||||| | || ||||||
Sbjct: 59688 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 59747
Query: 538 acctggcctgggttccacgtcat 560
| ||||| ||||||||||||||
Sbjct: 59748 aagtggccggggttccacgtcat 59770
Score = 42.1 bits (21), Expect = 0.33
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||| |||||||||||| |||||||||||| ||||| ||||||
Sbjct: 60485 tggagcggcgacttcgggctcaagacgctctggtacgcggagtac 60441
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 gcaccaggcggtggcgctccg 53
|||||||||||||||||||||
Sbjct: 59213 gcaccaggcggtggcgctccg 59233
>gb|AACV01018605.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018605, whole
genome shotgun sequence
Length = 17328
Score = 115 bits (58), Expect = 3e-023
Identities = 105/118 (88%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcc-cggcgccagttcttccgcaactgcgtcatctccg 160
|||||||||||| |||| |||| || |||| ||||||| ||||||||||||||||||||
Sbjct: 15500 ccaggacacgctctacgcgcactccaaggcg-cagttctaccgcaactgcgtcatctccg 15558
Query: 161 gcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatcgt 218
||||| | ||||||||||||||| || | ||||||||||||||||||||| |||||||
Sbjct: 15559 gcaccgtcgacttcatcttcggcgacgccgcggcggtgttccagaactgcgtcatcgt 15616
Score = 73.8 bits (37), Expect = 9e-011
Identities = 91/109 (83%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||| | | |||||||||| |||| ||||| | |||||||
Sbjct: 17060 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 17001
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccagaactgc 210
|||| | ||||| ||||||||||| | || || |||||||||||||||
Sbjct: 17000 caccgtctacttcgtcttcggcaacgccgccgccgtgttccagaactgc 16952
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgct 50
||||||||| |||||| || ||||||||||||||||||
Sbjct: 15411 aacacggcccgcgcggcgaagcaccaggcggtggcgct 15448
Score = 46.1 bits (23), Expect = 0.021
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||||||||| |||||||| ||| ||| |||||||||||| | || ||||||
Sbjct: 16654 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 16595
Query: 538 acctggcctgggttccacgtcat 560
| ||||| ||||||||||||||
Sbjct: 16594 aagtggccggggttccacgtcat 16572
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 33 gcaccaggcggtggcgctccg 53
|||||||||||||||||||||
Sbjct: 17129 gcaccaggcggtggcgctccg 17109
Score = 42.1 bits (21), Expect = 0.33
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||| |||||||||||| |||||||||||| ||||| ||||||
Sbjct: 15857 tggagcggcgacttcgggctcaagacgctctggtacgcggagtac 15901
>ref|XM_482698.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2268
Score = 115 bits (58), Expect = 3e-023
Identities = 105/118 (88%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcc-cggcgccagttcttccgcaactgcgtcatctccg 160
|||||||||||| |||| |||| || |||| ||||||| ||||||||||||||||||||
Sbjct: 1547 ccaggacacgctctacgcgcactccaaggcg-cagttctaccgcaactgcgtcatctccg 1605
Query: 161 gcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatcgt 218
||||| | ||||||||||||||| || | ||||||||||||||||||||| |||||||
Sbjct: 1606 gcaccgtcgacttcatcttcggcgacgccgcggcggtgttccagaactgcgtcatcgt 1663
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgct 50
||||||||| |||||| || ||||||||||||||||||
Sbjct: 1458 aacacggcccgcgcggcgaagcaccaggcggtggcgct 1495
Score = 42.1 bits (21), Expect = 0.33
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||| |||||||||||| |||||||||||| ||||| ||||||
Sbjct: 1902 tggagcggcgacttcgggctcaagacgctctggtacgcggagtac 1946
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 115 bits (58), Expect = 3e-023
Identities = 105/118 (88%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcc-cggcgccagttcttccgcaactgcgtcatctccg 160
|||||||||||| |||| |||| || |||| ||||||| ||||||||||||||||||||
Sbjct: 21737004 ccaggacacgctctacgcgcactccaaggcg-cagttctaccgcaactgcgtcatctccg 21736946
Query: 161 gcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatcgt 218
||||| | ||||||||||||||| || | ||||||||||||||||||||| |||||||
Sbjct: 21736945 gcaccgtcgacttcatcttcggcgacgccgcggcggtgttccagaactgcgtcatcgt 21736888
Score = 81.8 bits (41), Expect = 4e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||| | | |||||||||| |||| ||||| | |||||||
Sbjct: 21735446 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 21735505
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccagaactgc 210
|||| | |||||| ||||||||||| | || || |||||||||||||||
Sbjct: 21735506 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgc 21735554
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgct 50
||||||||| |||||| || ||||||||||||||||||
Sbjct: 21737093 aacacggcccgcgcggcgaagcaccaggcggtggcgct 21737056
Score = 46.1 bits (23), Expect = 0.021
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||||||||| |||||||| ||| ||| |||||||||||| | || ||||||
Sbjct: 21735852 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 21735911
Query: 538 acctggcctgggttccacgtcat 560
| ||||| ||||||||||||||
Sbjct: 21735912 aagtggccggggttccacgtcat 21735934
Score = 42.1 bits (21), Expect = 0.33
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||| |||||||||||| |||||||||||| ||||| ||||||
Sbjct: 21736649 tggagcggcgacttcgggctcaagacgctctggtacgcggagtac 21736605
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 gcaccaggcggtggcgctccg 53
|||||||||||||||||||||
Sbjct: 21735377 gcaccaggcggtggcgctccg 21735397
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 115 bits (58), Expect = 3e-023
Identities = 105/118 (88%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcc-cggcgccagttcttccgcaactgcgtcatctccg 160
|||||||||||| |||| |||| || |||| ||||||| ||||||||||||||||||||
Sbjct: 13249325 ccaggacacgctctacgcgcactccaaggcg-cagttctaccgcaactgcgtcatctccg 13249267
Query: 161 gcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatcgt 218
||||| | ||||||||||||||| || | ||||||||||||||||||||| |||||||
Sbjct: 13249266 gcaccgtcgacttcatcttcggcgacgccgcggcggtgttccagaactgcgtcatcgt 13249209
Score = 81.8 bits (41), Expect = 4e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||| | | |||||||||| |||| ||||| | |||||||
Sbjct: 13221192 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 13221251
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccagaactgc 210
|||| | |||||| ||||||||||| | || || |||||||||||||||
Sbjct: 13221252 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgc 13221300
Score = 73.8 bits (37), Expect = 9e-011
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||| | | |||||||||| |||| ||||| | |||||||
Sbjct: 13247765 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 13247824
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccagaactgc 210
|||| | ||||| ||||||||||| | || || |||||||||||||||
Sbjct: 13247825 caccgtctacttcgtcttcggcaacgccgccgccgtgttccagaactgc 13247873
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgct 50
||||||||| |||||| || ||||||||||||||||||
Sbjct: 13249414 aacacggcccgcgcggcgaagcaccaggcggtggcgct 13249377
Score = 46.1 bits (23), Expect = 0.021
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||||||||| |||||||| ||| ||| |||||||||||| | || ||||||
Sbjct: 13248171 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 13248230
Query: 538 acctggcctgggttccacgtcat 560
| ||||| ||||||||||||||
Sbjct: 13248231 aagtggccggggttccacgtcat 13248253
Score = 42.1 bits (21), Expect = 0.33
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||| |||||||||||| |||||||||||| ||||| ||||||
Sbjct: 13248968 tggagcggcgacttcgggctcaagacgctctggtacgcggagtac 13248924
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 gcaccaggcggtggcgctccg 53
|||||||||||||||||||||
Sbjct: 13247696 gcaccaggcggtggcgctccg 13247716
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 115 bits (58), Expect = 3e-023
Identities = 105/118 (88%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcc-cggcgccagttcttccgcaactgcgtcatctccg 160
|||||||||||| |||| |||| || |||| ||||||| ||||||||||||||||||||
Sbjct: 20851331 ccaggacacgctctacgcgcactccaaggcg-cagttctaccgcaactgcgtcatctccg 20851273
Query: 161 gcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatcgt 218
||||| | ||||||||||||||| || | ||||||||||||||||||||| |||||||
Sbjct: 20851272 gcaccgtcgacttcatcttcggcgacgccgcggcggtgttccagaactgcgtcatcgt 20851215
Score = 81.8 bits (41), Expect = 4e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||| | | |||||||||| |||| ||||| | |||||||
Sbjct: 20823198 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 20823257
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccagaactgc 210
|||| | |||||| ||||||||||| | || || |||||||||||||||
Sbjct: 20823258 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgc 20823306
Score = 73.8 bits (37), Expect = 9e-011
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||| | | |||||||||| |||| ||||| | |||||||
Sbjct: 20849771 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 20849830
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccagaactgc 210
|||| | ||||| ||||||||||| | || || |||||||||||||||
Sbjct: 20849831 caccgtctacttcgtcttcggcaacgccgccgccgtgttccagaactgc 20849879
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgct 50
||||||||| |||||| || ||||||||||||||||||
Sbjct: 20851420 aacacggcccgcgcggcgaagcaccaggcggtggcgct 20851383
Score = 46.1 bits (23), Expect = 0.021
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||||||||| |||||||| ||| ||| |||||||||||| | || ||||||
Sbjct: 20850177 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 20850236
Query: 538 acctggcctgggttccacgtcat 560
| ||||| ||||||||||||||
Sbjct: 20850237 aagtggccggggttccacgtcat 20850259
Score = 42.1 bits (21), Expect = 0.33
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||| |||||||||||| |||||||||||| ||||| ||||||
Sbjct: 20850974 tggagcggcgacttcgggctcaagacgctctggtacgcggagtac 20850930
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 gcaccaggcggtggcgctccg 53
|||||||||||||||||||||
Sbjct: 20849702 gcaccaggcggtggcgctccg 20849722
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 115 bits (58), Expect = 3e-023
Identities = 105/118 (88%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcc-cggcgccagttcttccgcaactgcgtcatctccg 160
|||||||||||| |||| |||| || |||| ||||||| ||||||||||||||||||||
Sbjct: 21975091 ccaggacacgctctacgcgcactccaaggcg-cagttctaccgcaactgcgtcatctccg 21975033
Query: 161 gcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcctcatcgt 218
||||| | ||||||||||||||| || | ||||||||||||||||||||| |||||||
Sbjct: 21975032 gcaccgtcgacttcatcttcggcgacgccgcggcggtgttccagaactgcgtcatcgt 21974975
Score = 81.8 bits (41), Expect = 4e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||| | | |||||||||| |||| ||||| | |||||||
Sbjct: 21973533 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtctccgg 21973592
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccagaactgc 210
|||| | |||||| ||||||||||| | || || |||||||||||||||
Sbjct: 21973593 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgc 21973641
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgct 50
||||||||| |||||| || ||||||||||||||||||
Sbjct: 21975180 aacacggcccgcgcggcgaagcaccaggcggtggcgct 21975143
Score = 46.1 bits (23), Expect = 0.021
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||||||||| |||||||| ||| ||| |||||||||||| | || ||||||
Sbjct: 21973939 acgctctactacggcgagtacatgaacaccgggcccggcgccggcgtcggcggcagggtc 21973998
Query: 538 acctggcctgggttccacgtcat 560
| ||||| ||||||||||||||
Sbjct: 21973999 aagtggccggggttccacgtcat 21974021
Score = 42.1 bits (21), Expect = 0.33
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||| |||||||||||| |||||||||||| ||||| ||||||
Sbjct: 21974736 tggagcggcgacttcgggctcaagacgctctggtacgcggagtac 21974692
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 gcaccaggcggtggcgctccg 53
|||||||||||||||||||||
Sbjct: 21973464 gcaccaggcggtggcgctccg 21973484
>dbj|AK072369.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064J16, full
insert sequence
Length = 2346
Score = 93.7 bits (47), Expect = 1e-016
Identities = 112/131 (85%), Gaps = 2/131 (1%)
Strand = Plus / Plus
Query: 81 caactgccggttcgacgcgttccaggacacgctgtacgtgcacgccc-ggcgccagttct 139
||||||| || | |||| |||||||||||||||||||| |||| || ||||| ||||||
Sbjct: 1405 caactgctggatggacgggttccaggacacgctgtacgcgcactccaaggcgc-agttct 1463
Query: 140 tccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcggcggtgt 199
|||||||||||||||| | |||||||| |||||| |||||||| || | || || ||||
Sbjct: 1464 accgcaactgcgtcatcacgggcaccatcgacttcgtcttcggcgacgccgccgccgtgt 1523
Query: 200 tccagaactgc 210
|||||||||||
Sbjct: 1524 tccagaactgc 1534
Score = 67.9 bits (34), Expect = 6e-009
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 445 tacatgccctggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||||||| ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 1772 tacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtac 1825
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgct 50
||||| ||||| |||||||| || |||| || ||||||||||||||||||
Sbjct: 1325 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgct 1374
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1081_G10
Length = 107955
Score = 93.7 bits (47), Expect = 1e-016
Identities = 112/131 (85%), Gaps = 2/131 (1%)
Strand = Plus / Minus
Query: 81 caactgccggttcgacgcgttccaggacacgctgtacgtgcacgccc-ggcgccagttct 139
||||||| || | |||| |||||||||||||||||||| |||| || ||||| ||||||
Sbjct: 31047 caactgctggatggacgggttccaggacacgctgtacgcgcactccaaggcgc-agttct 30989
Query: 140 tccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcggcggtgt 199
|||||||||||||||| | |||||||| |||||| |||||||| || | || || ||||
Sbjct: 30988 accgcaactgcgtcatcacgggcaccatcgacttcgtcttcggcgacgccgccgccgtgt 30929
Query: 200 tccagaactgc 210
|||||||||||
Sbjct: 30928 tccagaactgc 30918
Score = 67.9 bits (34), Expect = 6e-009
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 445 tacatgccctggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||||||| ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 30680 tacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtac 30627
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgct 50
||||| ||||| |||||||| || |||| || ||||||||||||||||||
Sbjct: 31127 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgct 31078
>gb|AACV01020049.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020049, whole
genome shotgun sequence
Length = 25091
Score = 93.7 bits (47), Expect = 1e-016
Identities = 112/131 (85%), Gaps = 2/131 (1%)
Strand = Plus / Plus
Query: 81 caactgccggttcgacgcgttccaggacacgctgtacgtgcacgccc-ggcgccagttct 139
||||||| || | |||| |||||||||||||||||||| |||| || ||||| ||||||
Sbjct: 9184 caactgctggatggacgggttccaggacacgctgtacgcgcactccaaggcgc-agttct 9242
Query: 140 tccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcggcggtgt 199
|||||||||||||||| | |||||||| |||||| |||||||| || | || || ||||
Sbjct: 9243 accgcaactgcgtcatcacgggcaccatcgacttcgtcttcggcgacgccgccgccgtgt 9302
Query: 200 tccagaactgc 210
|||||||||||
Sbjct: 9303 tccagaactgc 9313
Score = 67.9 bits (34), Expect = 6e-009
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 445 tacatgccctggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||||||| ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 9551 tacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtac 9604
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgct 50
||||| ||||| |||||||| || |||| || ||||||||||||||||||
Sbjct: 9104 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgct 9153
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 93.7 bits (47), Expect = 1e-016
Identities = 112/131 (85%), Gaps = 2/131 (1%)
Strand = Plus / Minus
Query: 81 caactgccggttcgacgcgttccaggacacgctgtacgtgcacgccc-ggcgccagttct 139
||||||| || | |||| |||||||||||||||||||| |||| || ||||| ||||||
Sbjct: 1559724 caactgctggatggacgggttccaggacacgctgtacgcgcactccaaggcgc-agttct 1559666
Query: 140 tccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcggcggtgt 199
|||||||||||||||| | |||||||| |||||| |||||||| || | || || ||||
Sbjct: 1559665 accgcaactgcgtcatcacgggcaccatcgacttcgtcttcggcgacgccgccgccgtgt 1559606
Query: 200 tccagaactgc 210
|||||||||||
Sbjct: 1559605 tccagaactgc 1559595
Score = 67.9 bits (34), Expect = 6e-009
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 445 tacatgccctggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||||||| ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 1559357 tacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtac 1559304
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgct 50
||||| ||||| |||||||| || |||| || ||||||||||||||||||
Sbjct: 1559804 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgct 1559755
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 93.7 bits (47), Expect = 1e-016
Identities = 112/131 (85%), Gaps = 2/131 (1%)
Strand = Plus / Minus
Query: 81 caactgccggttcgacgcgttccaggacacgctgtacgtgcacgccc-ggcgccagttct 139
||||||| || | |||| |||||||||||||||||||| |||| || ||||| ||||||
Sbjct: 5178890 caactgctggatggacgggttccaggacacgctgtacgcgcactccaaggcgc-agttct 5178832
Query: 140 tccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcggcggtgt 199
|||||||||||||||| | |||||||| |||||| |||||||| || | || || ||||
Sbjct: 5178831 accgcaactgcgtcatcacgggcaccatcgacttcgtcttcggcgacgccgccgccgtgt 5178772
Query: 200 tccagaactgc 210
|||||||||||
Sbjct: 5178771 tccagaactgc 5178761
Score = 67.9 bits (34), Expect = 6e-009
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 445 tacatgccctggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||||||| ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 5178523 tacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtac 5178470
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 134 agttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggc 183
|||||| |||| ||||| ||||||||||||| | |||||||||||||||
Sbjct: 10702590 agttctaccgcgactgccgcatctccggcaccgtcgacttcatcttcggc 10702541
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgct 50
||||| ||||| |||||||| || |||| || ||||||||||||||||||
Sbjct: 5178970 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgct 5178921
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 93.7 bits (47), Expect = 1e-016
Identities = 112/131 (85%), Gaps = 2/131 (1%)
Strand = Plus / Minus
Query: 81 caactgccggttcgacgcgttccaggacacgctgtacgtgcacgccc-ggcgccagttct 139
||||||| || | |||| |||||||||||||||||||| |||| || ||||| ||||||
Sbjct: 14652701 caactgctggatggacgggttccaggacacgctgtacgcgcactccaaggcgc-agttct 14652643
Query: 140 tccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcggcggtgt 199
|||||||||||||||| | |||||||| |||||| |||||||| || | || || ||||
Sbjct: 14652642 accgcaactgcgtcatcacgggcaccatcgacttcgtcttcggcgacgccgccgccgtgt 14652583
Query: 200 tccagaactgc 210
|||||||||||
Sbjct: 14652582 tccagaactgc 14652572
Score = 67.9 bits (34), Expect = 6e-009
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 445 tacatgccctggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||||||| ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 14652334 tacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtac 14652281
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 134 agttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggc 183
|||||| |||| ||||| ||||||||||||| | |||||||||||||||
Sbjct: 20176401 agttctaccgcgactgccgcatctccggcaccgtcgacttcatcttcggc 20176352
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgct 50
||||| ||||| |||||||| || |||| || ||||||||||||||||||
Sbjct: 14652781 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgct 14652732
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 93.7 bits (47), Expect = 1e-016
Identities = 112/131 (85%), Gaps = 2/131 (1%)
Strand = Plus / Minus
Query: 81 caactgccggttcgacgcgttccaggacacgctgtacgtgcacgccc-ggcgccagttct 139
||||||| || | |||| |||||||||||||||||||| |||| || ||||| ||||||
Sbjct: 15867921 caactgctggatggacgggttccaggacacgctgtacgcgcactccaaggcgc-agttct 15867863
Query: 140 tccgcaactgcgtcatctccggcaccattgacttcatcttcggcaactcggcggcggtgt 199
|||||||||||||||| | |||||||| |||||| |||||||| || | || || ||||
Sbjct: 15867862 accgcaactgcgtcatcacgggcaccatcgacttcgtcttcggcgacgccgccgccgtgt 15867803
Query: 200 tccagaactgc 210
|||||||||||
Sbjct: 15867802 tccagaactgc 15867792
Score = 67.9 bits (34), Expect = 6e-009
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 445 tacatgccctggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||||||| ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 15867554 tacatgccgtggaacggcgagttcgcgctcaagacgctctactacgccgagtac 15867501
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 134 agttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggc 183
|||||| |||| ||||| ||||||||||||| | |||||||||||||||
Sbjct: 21273819 agttctaccgcgactgccgcatctccggcaccgtcgacttcatcttcggc 21273770
Score = 52.0 bits (26), Expect = 3e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 1 atgggcttccacaacacggccggcgcggagaggcaccaggcggtggcgct 50
||||| ||||| |||||||| || |||| || ||||||||||||||||||
Sbjct: 15868001 atggggttccagaacacggcgggggcggcgaagcaccaggcggtggcgct 15867952
>dbj|AK070513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057H15, full
insert sequence
Length = 2099
Score = 91.7 bits (46), Expect = 4e-016
Identities = 145/178 (81%)
Strand = Plus / Plus
Query: 34 caccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggttc 93
||||||||||||||||||||||| ||| | |||| ||||||||||| | |||| ||||
Sbjct: 1157 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 1216
Query: 94 gacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtc 153
|||| | |||||||||||| ||| ||| || | | |||| || |||| ||||| |
Sbjct: 1217 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 1276
Query: 154 atctccggcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcc 211
||| |||||||||| |||||||||||||||||| || || |||| ||||||||||||
Sbjct: 1277 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgcc 1334
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0036G02, from chromosome 3, complete sequence
Length = 153308
Score = 91.7 bits (46), Expect = 4e-016
Identities = 145/178 (81%)
Strand = Plus / Minus
Query: 34 caccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggttc 93
||||||||||||||||||||||| ||| | |||| ||||||||||| | |||| ||||
Sbjct: 93450 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 93391
Query: 94 gacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtc 153
|||| | |||||||||||| ||| ||| || | | |||| || |||| ||||| |
Sbjct: 93390 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 93331
Query: 154 atctccggcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcc 211
||| |||||||||| |||||||||||||||||| || || |||| ||||||||||||
Sbjct: 93330 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgcc 93273
>gb|AACV01006428.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006428, whole
genome shotgun sequence
Length = 19243
Score = 91.7 bits (46), Expect = 4e-016
Identities = 145/178 (81%)
Strand = Plus / Plus
Query: 34 caccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggttc 93
||||||||||||||||||||||| ||| | |||| ||||||||||| | |||| ||||
Sbjct: 3617 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 3676
Query: 94 gacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtc 153
|||| | |||||||||||| ||| ||| || | | |||| || |||| ||||| |
Sbjct: 3677 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 3736
Query: 154 atctccggcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcc 211
||| |||||||||| |||||||||||||||||| || || |||| ||||||||||||
Sbjct: 3737 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgcc 3794
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 91.7 bits (46), Expect = 4e-016
Identities = 145/178 (81%)
Strand = Plus / Minus
Query: 34 caccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggttc 93
||||||||||||||||||||||| ||| | |||| ||||||||||| | |||| ||||
Sbjct: 1881554 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 1881495
Query: 94 gacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtc 153
|||| | |||||||||||| ||| ||| || | | |||| || |||| ||||| |
Sbjct: 1881494 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 1881435
Query: 154 atctccggcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcc 211
||| |||||||||| |||||||||||||||||| || || |||| ||||||||||||
Sbjct: 1881434 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgcc 1881377
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 91.7 bits (46), Expect = 4e-016
Identities = 145/178 (81%)
Strand = Plus / Minus
Query: 34 caccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggttc 93
||||||||||||||||||||||| ||| | |||| ||||||||||| | |||| ||||
Sbjct: 10613864 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 10613805
Query: 94 gacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtc 153
|||| | |||||||||||| ||| ||| || | | |||| || |||| ||||| |
Sbjct: 10613804 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 10613745
Query: 154 atctccggcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcc 211
||| |||||||||| |||||||||||||||||| || || |||| ||||||||||||
Sbjct: 10613744 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgcc 10613687
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 91.7 bits (46), Expect = 4e-016
Identities = 145/178 (81%)
Strand = Plus / Minus
Query: 34 caccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggttc 93
||||||||||||||||||||||| ||| | |||| ||||||||||| | |||| ||||
Sbjct: 10806226 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 10806167
Query: 94 gacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtc 153
|||| | |||||||||||| ||| ||| || | | |||| || |||| ||||| |
Sbjct: 10806166 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 10806107
Query: 154 atctccggcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcc 211
||| |||||||||| |||||||||||||||||| || || |||| ||||||||||||
Sbjct: 10806106 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgcc 10806049
Score = 77.8 bits (39), Expect = 6e-012
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
|||||||||||||| || ||| ||| |||||||||| ||| | |||||||||||||||
Sbjct: 16618294 ccaggacacgctgttcgcgcaggcctaccgccagttctaccggagctgcgtcatctccgg 16618353
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccag 204
|||| | ||||||||||||||| || |||| || ||||||||
Sbjct: 16618354 caccgtcgacttcatcttcggcgacgcggccgccatgttccag 16618396
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 91.7 bits (46), Expect = 4e-016
Identities = 145/178 (81%)
Strand = Plus / Minus
Query: 34 caccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggttc 93
||||||||||||||||||||||| ||| | |||| ||||||||||| | |||| ||||
Sbjct: 10535738 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 10535679
Query: 94 gacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtc 153
|||| | |||||||||||| ||| ||| || | | |||| || |||| ||||| |
Sbjct: 10535678 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 10535619
Query: 154 atctccggcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcc 211
||| |||||||||| |||||||||||||||||| || || |||| ||||||||||||
Sbjct: 10535618 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgcc 10535561
Score = 77.8 bits (39), Expect = 6e-012
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
|||||||||||||| || ||| ||| |||||||||| ||| | |||||||||||||||
Sbjct: 15985544 ccaggacacgctgttcgcgcaggcctaccgccagttctaccggagctgcgtcatctccgg 15985603
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccag 204
|||| | ||||||||||||||| || |||| || ||||||||
Sbjct: 15985604 caccgtcgacttcatcttcggcgacgcggccgccatgttccag 15985646
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 91.7 bits (46), Expect = 4e-016
Identities = 145/178 (81%)
Strand = Plus / Minus
Query: 34 caccaggcggtggcgctccgcgttcagggagacctcgcggcgttctacaactgccggttc 93
||||||||||||||||||||||| ||| | |||| ||||||||||| | |||| ||||
Sbjct: 10537637 caccaggcggtggcgctccgcgtgcagagcgaccagtcggcgttctacgagtgccagttc 10537578
Query: 94 gacgcgttccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtc 153
|||| | |||||||||||| ||| ||| || | | |||| || |||| ||||| |
Sbjct: 10537577 gacgggcaccaggacacgctctacacccacaccagcaggcagtactaccgcgactgcacc 10537518
Query: 154 atctccggcaccattgacttcatcttcggcaactcggcggcggtgttccagaactgcc 211
||| |||||||||| |||||||||||||||||| || || |||| ||||||||||||
Sbjct: 10537517 atcaccggcaccatcgacttcatcttcggcaacgcgcaggtggtgctccagaactgcc 10537460
Score = 77.8 bits (39), Expect = 6e-012
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
|||||||||||||| || ||| ||| |||||||||| ||| | |||||||||||||||
Sbjct: 15991010 ccaggacacgctgttcgcgcaggcctaccgccagttctaccggagctgcgtcatctccgg 15991069
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccag 204
|||| | ||||||||||||||| || |||| || ||||||||
Sbjct: 15991070 caccgtcgacttcatcttcggcgacgcggccgccatgttccag 15991112
>dbj|AK105998.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H08, full
insert sequence
Length = 1488
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||| || ||||| ||| ||| ||||||||||||||| | |||| ||||| |||
Sbjct: 729 ccaggacaccctctacgtccactccctccgccagttcttccgcgagtgcgacatctacgg 788
Query: 162 caccattgacttcatcttcggcaactc 188
|||||| ||||||||||||||||||||
Sbjct: 789 caccatcgacttcatcttcggcaactc 815
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1011A07
Length = 150590
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||| || ||||| ||| ||| ||||||||||||||| | |||| ||||| |||
Sbjct: 71973 ccaggacaccctctacgtccactccctccgccagttcttccgcgagtgcgacatctacgg 72032
Query: 162 caccattgacttcatcttcggcaactc 188
|||||| ||||||||||||||||||||
Sbjct: 72033 caccatcgacttcatcttcggcaactc 72059
Score = 79.8 bits (40), Expect = 2e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||||||||||||||||||||||| |||| |||| || | |||||||| ||||||
Sbjct: 37782 acgctctactacgccgagtacaacaactccggcgccggggcggacaccagcaggagggtg 37723
Query: 538 acctggcctgggttccacgt 557
|||||||| |||| ||||||
Sbjct: 37722 acctggccggggtaccacgt 37703
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccg 53
||||||||||| ||| || |||||||||||||||||||||
Sbjct: 38250 aacacggccgggccggcgaagcaccaggcggtggcgctccg 38210
>gb|AACV01000869.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000869, whole
genome shotgun sequence
Length = 17382
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||| || ||||| ||| ||| ||||||||||||||| | |||| ||||| |||
Sbjct: 12220 ccaggacaccctctacgtccactccctccgccagttcttccgcgagtgcgacatctacgg 12161
Query: 162 caccattgacttcatcttcggcaactc 188
|||||| ||||||||||||||||||||
Sbjct: 12160 caccatcgacttcatcttcggcaactc 12134
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||| || ||||| ||| ||| ||||||||||||||| | |||| ||||| |||
Sbjct: 11730587 ccaggacaccctctacgtccactccctccgccagttcttccgcgagtgcgacatctacgg 11730646
Query: 162 caccattgacttcatcttcggcaactc 188
|||||| ||||||||||||||||||||
Sbjct: 11730647 caccatcgacttcatcttcggcaactc 11730673
Score = 79.8 bits (40), Expect = 2e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||||||||||||||||||||||| |||| |||| || | |||||||| ||||||
Sbjct: 11696396 acgctctactacgccgagtacaacaactccggcgccggggcggacaccagcaggagggtg 11696337
Query: 538 acctggcctgggttccacgt 557
|||||||| |||| ||||||
Sbjct: 11696336 acctggccggggtaccacgt 11696317
Score = 73.8 bits (37), Expect = 9e-011
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
|||||||||||| |||| |||| ||| |||||||||| |||| ||||| | |||||||
Sbjct: 8445089 ccaggacacgctctacgcgcactccctccgccagttctaccgcgactgccgcgtctccgg 8445030
Query: 162 caccattgacttcatcttcggcaac 186
|||| | ||||||||||||||||||
Sbjct: 8445029 caccgtcgacttcatcttcggcaac 8445005
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 38281222 tggaacggcgacttcgcgctcaagacgctctactacggcgagtac 38281178
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 19 gccggcgcggagaggcaccaggcggtggcgct 50
|||||||||| |||||||||||||||||||||
Sbjct: 7427455 gccggcgcggcgaggcaccaggcggtggcgct 7427486
Score = 54.0 bits (27), Expect = 9e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||||| | ||| ||||||| |||| |||||| | || ||||
Sbjct: 7427538 ccaggacacgctgtacgcgcacgcgcagcggcagttctaccgcgactgcgacgtcgccgg 7427597
Query: 162 cac 164
|||
Sbjct: 7427598 cac 7427600
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 364 tacctgggccgaccctggaaggagttctcgcgc 396
||||||||||| ||||||||||||| |||||||
Sbjct: 38281312 tacctgggccggccctggaaggagtactcgcgc 38281280
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccg 53
||||||||||| ||| || |||||||||||||||||||||
Sbjct: 11696864 aacacggccgggccggcgaagcaccaggcggtggcgctccg 11696824
Score = 48.1 bits (24), Expect = 0.005
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 473 tcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggcac 524
|||||||||||| ||||| ||||||| | |||| |||||||||||| ||||
Sbjct: 33533659 tcaagacgctcttctacggcgagtaccagaaccagggccccggcgccagcac 33533710
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgt 56
|||||||| ||||| |||| ||| ||||||||||| ||||||||
Sbjct: 33533196 aacacggcgggcgccgagaagcagcaggcggtggccctccgcgt 33533239
Score = 44.1 bits (22), Expect = 0.084
Identities = 73/90 (81%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| ||||||| ||| ||||||| | | ||| | |||| ||
Sbjct: 38281598 ccaggacacgctgtacgcgcacgccatgcggcagttctacacccggtgccgcgtctctgg 38281539
Query: 162 caccattgacttcatcttcggcaactcggc 191
|||| | |||||| ||||||||||||||||
Sbjct: 38281538 caccgtcgacttcgtcttcggcaactcggc 38281509
Score = 42.1 bits (21), Expect = 0.33
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgc 518
||||||||||||| ||||||| |||| ||||||||||||
Sbjct: 7427929 acgctctactacggcgagtaccgcaactccggccccggcgc 7427969
>ref|NM_183704.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 888
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||| || ||||| ||| ||| ||||||||||||||| | |||| ||||| |||
Sbjct: 330 ccaggacaccctctacgtccactccctccgccagttcttccgcgagtgcgacatctacgg 389
Query: 162 caccattgacttcatcttcggcaactc 188
|||||| ||||||||||||||||||||
Sbjct: 390 caccatcgacttcatcttcggcaactc 416
>ref|NT_079961.2| Oryza sativa (japonica cultivar-group)
Length = 3480660
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||| || ||||| ||| ||| ||||||||||||||| | |||| ||||| |||
Sbjct: 239812 ccaggacaccctctacgtccactccctccgccagttcttccgcgagtgcgacatctacgg 239871
Query: 162 caccattgacttcatcttcggcaactc 188
|||||| ||||||||||||||||||||
Sbjct: 239872 caccatcgacttcatcttcggcaactc 239898
Score = 79.8 bits (40), Expect = 2e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||||||||||||||||||||||| |||| |||| || | |||||||| ||||||
Sbjct: 205621 acgctctactacgccgagtacaacaactccggcgccggggcggacaccagcaggagggtg 205562
Query: 538 acctggcctgggttccacgt 557
|||||||| |||| ||||||
Sbjct: 205561 acctggccggggtaccacgt 205542
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccg 53
||||||||||| ||| || |||||||||||||||||||||
Sbjct: 206089 aacacggccgggccggcgaagcaccaggcggtggcgctccg 206049
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002
genomic scaffold, whole genome shotgun sequence
Length = 5008528
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||| || ||||| ||| ||| ||||||||||||||| | |||| ||||| |||
Sbjct: 186087 ccaggacaccctctacgtccactccctccgccagttcttccgcgagtgcgacatctacgg 186146
Query: 162 caccattgacttcatcttcggcaactc 188
|||||| ||||||||||||||||||||
Sbjct: 186147 caccatcgacttcatcttcggcaactc 186173
Score = 79.8 bits (40), Expect = 2e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||||||||||||||||||||||| |||| |||| || | |||||||| ||||||
Sbjct: 149392 acgctctactacgccgagtacaacaactccggcgccggggcggacaccagcaggagggtg 149333
Query: 538 acctggcctgggttccacgt 557
|||||||| |||| ||||||
Sbjct: 149332 acctggccggggtaccacgt 149313
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccg 53
||||||||||| ||| || |||||||||||||||||||||
Sbjct: 149860 aacacggccgggccggcgaagcaccaggcggtggcgctccg 149820
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||| || ||||| ||| ||| ||||||||||||||| | |||| ||||| |||
Sbjct: 11802582 ccaggacaccctctacgtccactccctccgccagttcttccgcgagtgcgacatctacgg 11802641
Query: 162 caccattgacttcatcttcggcaactc 188
|||||| ||||||||||||||||||||
Sbjct: 11802642 caccatcgacttcatcttcggcaactc 11802668
Score = 79.8 bits (40), Expect = 2e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||||||||||||||||||||||| |||| |||| || | |||||||| ||||||
Sbjct: 11765887 acgctctactacgccgagtacaacaactccggcgccggggcggacaccagcaggagggtg 11765828
Query: 538 acctggcctgggttccacgt 557
|||||||| |||| ||||||
Sbjct: 11765827 acctggccggggtaccacgt 11765808
Score = 73.8 bits (37), Expect = 9e-011
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
|||||||||||| |||| |||| ||| |||||||||| |||| ||||| | |||||||
Sbjct: 8498716 ccaggacacgctctacgcgcactccctccgccagttctaccgcgactgccgcgtctccgg 8498657
Query: 162 caccattgacttcatcttcggcaac 186
|||| | ||||||||||||||||||
Sbjct: 8498656 caccgtcgacttcatcttcggcaac 8498632
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 37665881 tggaacggcgacttcgcgctcaagacgctctactacggcgagtac 37665837
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 37664421 tggaacggcgacttcgcgctcaagacgctctactacggcgagtac 37664377
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 19 gccggcgcggagaggcaccaggcggtggcgct 50
|||||||||| |||||||||||||||||||||
Sbjct: 7506194 gccggcgcggcgaggcaccaggcggtggcgct 7506225
Score = 54.0 bits (27), Expect = 9e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||||| | ||| ||||||| |||| |||||| | || ||||
Sbjct: 7506277 ccaggacacgctgtacgcgcacgcgcagcggcagttctaccgcgactgcgacgtcgccgg 7506336
Query: 162 cac 164
|||
Sbjct: 7506337 cac 7506339
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 364 tacctgggccgaccctggaaggagttctcgcgc 396
||||||||||| ||||||||||||| |||||||
Sbjct: 37665971 tacctgggccggccctggaaggagtactcgcgc 37665939
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 364 tacctgggccgaccctggaaggagttctcgcgc 396
||||||||||| ||||||||||||| |||||||
Sbjct: 37664511 tacctgggccggccctggaaggagtactcgcgc 37664479
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccg 53
||||||||||| ||| || |||||||||||||||||||||
Sbjct: 11766355 aacacggccgggccggcgaagcaccaggcggtggcgctccg 11766315
Score = 48.1 bits (24), Expect = 0.005
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 473 tcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggcac 524
|||||||||||| ||||| ||||||| | |||| |||||||||||| ||||
Sbjct: 33115428 tcaagacgctcttctacggcgagtaccagaaccagggccccggcgccagcac 33115479
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgt 56
|||||||| ||||| |||| ||| ||||||||||| ||||||||
Sbjct: 33114965 aacacggcgggcgccgagaagcagcaggcggtggccctccgcgt 33115008
Score = 44.1 bits (22), Expect = 0.084
Identities = 73/90 (81%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| ||||||| ||| ||||||| | | ||| | |||| ||
Sbjct: 37666257 ccaggacacgctgtacgcgcacgccatgcggcagttctacacccggtgccgcgtctctgg 37666198
Query: 162 caccattgacttcatcttcggcaactcggc 191
|||| | |||||| ||||||||||||||||
Sbjct: 37666197 caccgtcgacttcgtcttcggcaactcggc 37666168
Score = 42.1 bits (21), Expect = 0.33
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgc 518
||||||||||||| ||||||| |||| ||||||||||||
Sbjct: 7506668 acgctctactacggcgagtaccgcaactccggccccggcgc 7506708
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 85.7 bits (43), Expect = 2e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||| || ||||| ||| ||| ||||||||||||||| | |||| ||||| |||
Sbjct: 11732805 ccaggacaccctctacgtccactccctccgccagttcttccgcgagtgcgacatctacgg 11732864
Query: 162 caccattgacttcatcttcggcaactc 188
|||||| ||||||||||||||||||||
Sbjct: 11732865 caccatcgacttcatcttcggcaactc 11732891
Score = 79.8 bits (40), Expect = 2e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgccggcaccagcaagagggtc 537
||||||||||||||||||||||||||| |||| |||| || | |||||||| ||||||
Sbjct: 11698614 acgctctactacgccgagtacaacaactccggcgccggggcggacaccagcaggagggtg 11698555
Query: 538 acctggcctgggttccacgt 557
|||||||| |||| ||||||
Sbjct: 11698554 acctggccggggtaccacgt 11698535
Score = 73.8 bits (37), Expect = 9e-011
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
|||||||||||| |||| |||| ||| |||||||||| |||| ||||| | |||||||
Sbjct: 8447307 ccaggacacgctctacgcgcactccctccgccagttctaccgcgactgccgcgtctccgg 8447248
Query: 162 caccattgacttcatcttcggcaac 186
|||| | ||||||||||||||||||
Sbjct: 8447247 caccgtcgacttcatcttcggcaac 8447223
Score = 58.0 bits (29), Expect = 6e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 454 tggaacggcgacttcggcatcaagacgctctactacgccgagtac 498
|||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 38200552 tggaacggcgacttcgcgctcaagacgctctactacggcgagtac 38200508
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 19 gccggcgcggagaggcaccaggcggtggcgct 50
|||||||||| |||||||||||||||||||||
Sbjct: 7429673 gccggcgcggcgaggcaccaggcggtggcgct 7429704
Score = 54.0 bits (27), Expect = 9e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||||| | ||| ||||||| |||| |||||| | || ||||
Sbjct: 7429756 ccaggacacgctgtacgcgcacgcgcagcggcagttctaccgcgactgcgacgtcgccgg 7429815
Query: 162 cac 164
|||
Sbjct: 7429816 cac 7429818
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 364 tacctgggccgaccctggaaggagttctcgcgc 396
||||||||||| ||||||||||||| |||||||
Sbjct: 38200642 tacctgggccggccctggaaggagtactcgcgc 38200610
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccg 53
||||||||||| ||| || |||||||||||||||||||||
Sbjct: 11699082 aacacggccgggccggcgaagcaccaggcggtggcgctccg 11699042
Score = 48.1 bits (24), Expect = 0.005
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 473 tcaagacgctctactacgccgagtacaacaaccgcggccccggcgccggcac 524
|||||||||||| ||||| ||||||| | |||| |||||||||||| ||||
Sbjct: 33452989 tcaagacgctcttctacggcgagtaccagaaccagggccccggcgccagcac 33453040
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgt 56
|||||||| ||||| |||| ||| ||||||||||| ||||||||
Sbjct: 33452526 aacacggcgggcgccgagaagcagcaggcggtggccctccgcgt 33452569
Score = 44.1 bits (22), Expect = 0.084
Identities = 73/90 (81%)
Strand = Plus / Minus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| ||||||| ||| ||||||| | | ||| | |||| ||
Sbjct: 38200928 ccaggacacgctgtacgcgcacgccatgcggcagttctacacccggtgccgcgtctctgg 38200869
Query: 162 caccattgacttcatcttcggcaactcggc 191
|||| | |||||| ||||||||||||||||
Sbjct: 38200868 caccgtcgacttcgtcttcggcaactcggc 38200839
Score = 42.1 bits (21), Expect = 0.33
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 478 acgctctactacgccgagtacaacaaccgcggccccggcgc 518
||||||||||||| ||||||| |||| ||||||||||||
Sbjct: 7430147 acgctctactacggcgagtaccgcaactccggccccggcgc 7430187
>gb|C97105.1|C97105 C97105 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52004_2A, mRNA sequence
Length = 309
Score = 83.8 bits (42), Expect = 1e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 102 ccaggacacgctgtacgtgcacgcccggcgccagttcttccgcaactgcgtcatctccgg 161
||||||||||||||||| |||| | | |||||||||| |||| ||||| | |||||||
Sbjct: 135 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcnactgccgcgtctccgg 194
Query: 162 caccattgacttcatcttcggcaactcggcggcggtgttccagaactgc 210
|||| | |||||| ||||||||||| || | || |||||||||||||||
Sbjct: 195 caccgtcgacttcgtcttcggcaacgcgccagccgtgttccagaactgc 243
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 gcaccaggcggtggcgctccg 53
|||||||||||||||||||||
Sbjct: 66 gcaccaggcggtggcgctccg 86
>dbj|AK071728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112F11, full
insert sequence
Length = 2119
Score = 83.8 bits (42), Expect = 1e-013
Identities = 114/138 (82%)
Strand = Plus / Plus
Query: 13 aacacggccggcgcggagaggcaccaggcggtggcgctccgcgttcagggagacctcgcg 72
|||||||| || |||||| |||||||||||||| ||||||| ||| | ||| | |||
Sbjct: 1135 aacacggcggggccggagaaccaccaggcggtggctctccgcgcgcagagcgacatggcg 1194
Query: 73 gcgttctacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcccggcgc 132
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Sbjct: 1195 gtgttctaccagtgcgagttcgacgggtaccaggacacgctgtacccgcacgcgcagcgc 1254
Query: 133 cagttcttccgcaactgc 150
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Sbjct: 1255 cagttcttccgcgactgc 1272
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 864,787
Number of Sequences: 438736
Number of extensions: 864787
Number of successful extensions: 23663
Number of sequences better than 0.5: 152
Number of HSP's better than 0.5 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20572
Number of HSP's gapped (non-prelim): 3055
length of query: 593
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 572
effective length of database: 2,791,206,460
effective search space: 1596570095120
effective search space used: 1596570095120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)