BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3197099.2.1
(631 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU091754.1|AU091754 AU091754 Rice callus Oryza sativa (j... 327 4e-087
gb|CB641950.1|CB641950 OSJNEb01N22.r OSJNEb Oryza sativa (j... 327 4e-087
gb|CB671136.1|CB671136 OSJNEe04I24.r OSJNEe Oryza sativa (j... 327 4e-087
dbj|AB081950.1| Oryza sativa (japonica cultivar-group) OsPN... 327 4e-087
gb|CB641981.1|CB641981 OSJNEb01O19.r OSJNEb Oryza sativa (j... 311 2e-082
gb|CA999687.1|CA999687 S234I_A02 Rice cold stress germinati... 281 2e-073
dbj|AP003986.1| Oryza sativa (japonica cultivar-group) chro... 135 3e-029
dbj|AK060277.1| Oryza sativa (japonica cultivar-group) cDNA... 135 3e-029
dbj|AP004236.3| Oryza sativa (japonica cultivar-group) geno... 135 3e-029
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 135 3e-029
gb|AACV01014478.1| Oryza sativa (japonica cultivar-group) c... 135 3e-029
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 135 3e-029
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 135 3e-029
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 135 3e-029
gb|CB644930.1|CB644930 OSJNEb06F17.f OSJNEb Oryza sativa (j... 82 4e-013
gb|CB664150.1|CB664150 OSJNEd09L10.r OSJNEd Oryza sativa (j... 82 4e-013
gb|CB670123.1|CB670123 OSJNEe03A22.r OSJNEe Oryza sativa (j... 82 4e-013
gb|CB670855.1|CB670855 OSJNEe04C12.r OSJNEe Oryza sativa (j... 82 4e-013
dbj|AK111504.1| Oryza sativa (japonica cultivar-group) cDNA... 82 4e-013
dbj|AK111587.1| Oryza sativa (japonica cultivar-group) cDNA... 82 4e-013
dbj|AK111996.1| Oryza sativa (japonica cultivar-group) cDNA... 82 4e-013
ref|XM_473529.1| Oryza sativa (japonica cultivar-group), p... 82 4e-013
gb|CF312777.1|CF312777 ABF--08-K18.b1 ABF3-overexpressing t... 74 1e-010
dbj|AG025273.1| Oryza sativa (japonica cultivar-group) DNA,... 72 4e-010
gb|CB653344.1|CB653344 OSJNEc04E11.r OSJNEc Oryza sativa (j... 64 1e-007
gb|CB665755.1|CB665755 OSJNEd12F14.r OSJNEd Oryza sativa (j... 64 1e-007
dbj|AK111553.1| Oryza sativa (japonica cultivar-group) cDNA... 64 1e-007
dbj|AK112025.1| Oryza sativa (japonica cultivar-group) cDNA... 64 1e-007
dbj|AB155171.1| Oryza sativa (japonica cultivar-group) DNA,... 62 4e-007
gb|AACV01010310.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 56 2e-005
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromoso... 56 2e-005
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
ref|NM_185035.1| Oryza sativa (japonica cultivar-group), mRNA 54 9e-005
gb|CF312778.1|CF312778 ABF--08-K18.g1 ABF3-overexpressing t... 52 4e-004
gb|C29031.1|C29031 C29031 Rice callus cDNA Oryza sativa (ja... 50 0.001
dbj|AK100285.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
dbj|AK103279.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
ref|XM_468547.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.001
ref|XM_476934.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.001
dbj|AK111500.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.023
dbj|AK111833.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.023
dbj|AB081951.1| Oryza sativa (japonica cultivar-group) OsAG... 44 0.090
dbj|AP004188.3| Oryza sativa (japonica cultivar-group) geno... 42 0.36
gb|AACV01005121.1| Oryza sativa (japonica cultivar-group) c... 42 0.36
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 42 0.36
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.36
>gb|AU091754.1|AU091754 AU091754 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12560, mRNA sequence
Length = 714
Score = 327 bits (165), Expect = 4e-087
Identities = 302/347 (87%), Gaps = 3/347 (0%)
Strand = Plus / Minus
Query: 288 cagtagaacatcatccttttcaccttctccttcacagcaggcaggggcttcaccgagact 347
||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 470 cagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccgaggtt 411
Query: 348 ccgctcgggccattggaggtcttggacgtc---tggttgtccaacatctctggttccatg 404
||| ||| ||| ||||| |||| |||||| ||||| ||| |||||||||| ||||||
Sbjct: 410 ccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctccatg 351
Query: 405 tagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaacacaaacc 464
|||||||| || || || || |||| || || ||||||||||| || |||||| ||||
Sbjct: 350 tagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtggaacaacagaaaca 291
Query: 465 gagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatttcgtct 524
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 290 gagcgtgtgcaccgtgcataagtgtagcaaaggttgtttgtcaatgtctgcatttcgtct 231
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|| |||||||||||||||||||| ||||| ||| ||||||| |||||||| ||||||||
Sbjct: 230 gcagtgaaattgttctcatcccaaaggacgtggtagtgagctggcctacttgttccctga 171
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 170 attccagcatggctacagaggtagaaatcaaactctgatgggtggca 124
>gb|CB641950.1|CB641950 OSJNEb01N22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01N22 3', mRNA sequence
Length = 813
Score = 327 bits (165), Expect = 4e-087
Identities = 302/347 (87%), Gaps = 3/347 (0%)
Strand = Plus / Plus
Query: 288 cagtagaacatcatccttttcaccttctccttcacagcaggcaggggcttcaccgagact 347
||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 285 cagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccgaggtt 344
Query: 348 ccgctcgggccattggaggtcttggacgtc---tggttgtccaacatctctggttccatg 404
||| ||| ||| ||||| |||| |||||| ||||| ||| |||||||||| ||||||
Sbjct: 345 ccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctccatg 404
Query: 405 tagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaacacaaacc 464
|||||||| || || || || |||| || || ||||||||||| || |||||| ||||
Sbjct: 405 tagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtggaacaacagaaaca 464
Query: 465 gagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatttcgtct 524
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 465 gagcgtgtgcaccgtgcataagtgtagcaaaggttgtttgtcaatgtctgcatttcgtct 524
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|| |||||||||||||||||||| ||||| ||| ||||||| |||||||| ||||||||
Sbjct: 525 gcagtgaaattgttctcatcccaaaggacgtggtagtgagctggcctacttgttccctga 584
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 585 attccagcatggctacagaggtagaaatcaaactctgatgggtggca 631
>gb|CB671136.1|CB671136 OSJNEe04I24.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04I24 3', mRNA sequence
Length = 827
Score = 327 bits (165), Expect = 4e-087
Identities = 302/347 (87%), Gaps = 3/347 (0%)
Strand = Plus / Plus
Query: 288 cagtagaacatcatccttttcaccttctccttcacagcaggcaggggcttcaccgagact 347
||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 228 cagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccgaggtt 287
Query: 348 ccgctcgggccattggaggtcttggacgtc---tggttgtccaacatctctggttccatg 404
||| ||| ||| ||||| |||| |||||| ||||| ||| |||||||||| ||||||
Sbjct: 288 ccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctccatg 347
Query: 405 tagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaacacaaacc 464
|||||||| || || || || |||| || || ||||||||||| || |||||| ||||
Sbjct: 348 tagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtggaacaacagaaaca 407
Query: 465 gagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatttcgtct 524
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 408 gagcgtgtgcaccgtgcataagtgtagcaaaggttgtttgtcaatgtctgcatttcgtct 467
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|| |||||||||||||||||||| ||||| ||| ||||||| |||||||| ||||||||
Sbjct: 468 gcagtgaaattgttctcatcccaaaggacgtggtagtgagctggcctacttgttccctga 527
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 528 attccagcatggctacagaggtagaaatcaaactctgatgggtggca 574
>dbj|AB081950.1| Oryza sativa (japonica cultivar-group) OsPNH1 mRNA for ZLL/PNH
homologous protein, complete cds
Length = 3548
Score = 327 bits (165), Expect = 4e-087
Identities = 302/347 (87%), Gaps = 3/347 (0%)
Strand = Plus / Minus
Query: 288 cagtagaacatcatccttttcaccttctccttcacagcaggcaggggcttcaccgagact 347
||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 3256 cagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccgaggtt 3197
Query: 348 ccgctcgggccattggaggtcttggacgtc---tggttgtccaacatctctggttccatg 404
||| ||| ||| ||||| |||| |||||| ||||| ||| |||||||||| ||||||
Sbjct: 3196 ccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctccatg 3137
Query: 405 tagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaacacaaacc 464
|||||||| || || || || |||| || || ||||||||||| || |||||| ||||
Sbjct: 3136 tagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtggaacaacagaaaca 3077
Query: 465 gagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatttcgtct 524
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 3076 gagcgtgtgcaccgtgcataagtgtagcaaaggttgtttgtcaatgtctgcatttcgtct 3017
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|| |||||||||||||||||||| ||||| ||| ||||||| |||||||| ||||||||
Sbjct: 3016 gcagtgaaattgttctcatcccaaaggacgtggtagtgagctggcctacttgttccctga 2957
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 2956 attccagcatggctacagaggtagaaatcaaactctgatgggtggca 2910
>gb|CB641981.1|CB641981 OSJNEb01O19.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01O19 3', mRNA sequence
Length = 804
Score = 311 bits (157), Expect = 2e-082
Identities = 300/347 (86%), Gaps = 3/347 (0%)
Strand = Plus / Plus
Query: 288 cagtagaacatcatccttttcaccttctccttcacagcaggcaggggcttcaccgagact 347
||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 235 cagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccgaggtt 294
Query: 348 ccgctcgggccattggaggtcttggacgtc---tggttgtccaacatctctggttccatg 404
||| ||| ||| ||||| |||| |||||| ||||| ||| |||||||||| ||||||
Sbjct: 295 ccgttcgtcccaatggagctcttcgacgtcgtctggttctccgacatctctggctccatg 354
Query: 405 tagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaacacaaacc 464
|||||||| || || || || |||| || || ||||||||||| || |||||| ||||
Sbjct: 355 tagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtggaacaacagaaaca 414
Query: 465 gagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatttcgtct 524
|||||||||||||| ||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct: 415 gagcgtgtgcaccgtgcataagtgtaccaaaggttgtttgtcaatgtctgcatttcgtct 474
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|| |||||||||||||||||||| ||||| ||| ||||||| |||||||| ||||||||
Sbjct: 475 gcagtgaaattgttctcatcccaaaggacgtggtagtgagctggcctacttgttccctga 534
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||||||||| ||||||||||| ||||||||||| | |||||||||
Sbjct: 535 attccagcatggctacagaggtataaatcaaactctgatgggtggca 581
>gb|CA999687.1|CA999687 S234I_A02 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 463
Score = 281 bits (142), Expect = 2e-073
Identities = 229/258 (88%)
Strand = Plus / Minus
Query: 374 cgtctggttgtccaacatctctggttccatgtagaaccgagcccgcaatgctgccaagtg 433
||||||||| ||| |||||||||| |||||||||||||| || || || || |||| ||
Sbjct: 406 cgtctggttctccgacatctctggctccatgtagaaccgcgctcgaaacgcagccagatg 347
Query: 434 tgcgtagtatgcaggagggacaacacaaaccgagcgtgtgcaccgggcataagtgtagca 493
|| ||||||||||| || |||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 346 cgcatagtatgcaggtggaacaacagaaacagagcgtgtgcaccgtgcataagtgtagca 287
Query: 494 aaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcccagaggac 553
||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 286 aaggttgtttgtcaatgtctgcatttcgtctgcagtgaaattgttctcatcccaaaggac 227
Query: 554 atgggagtgagcaggcctactcgttccctggattccagcatgactacagaggtagaaatc 613
||| ||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct: 226 gtggtagtgagctggcctacttgttccctgaattccagcatggctacagaggtagaaatc 167
Query: 614 aaactccgttgggtggca 631
|||||| | |||||||||
Sbjct: 166 aaactctgatgggtggca 149
>dbj|AP003986.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1057_A09,
*** SEQUENCING IN PROGRESS ***
Length = 105649
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 55254 gtgtagcaaaggttgtttgtcaatgtctgcatttcgtctgcagtgaaattgttctcatcc 55313
Query: 546 cagaggacatgggagtgagcaggcctactcgttccctgga 585
|| ||||| ||| ||||||| |||||||| ||||||||||
Sbjct: 55314 caaaggacgtggtagtgagctggcctacttgttccctgga 55353
Score = 99.6 bits (50), Expect = 2e-018
Identities = 136/164 (82%), Gaps = 3/164 (1%)
Strand = Plus / Plus
Query: 288 cagtagaacatcatccttttcaccttctccttcacagcaggcaggggcttcaccgagact 347
||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 54840 cagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccgaggtt 54899
Query: 348 ccgctcgggccattggaggtcttggacgtc---tggttgtccaacatctctggttccatg 404
||| ||| ||| ||||| |||| |||||| ||||| ||| |||||||||| ||||||
Sbjct: 54900 ccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctccatg 54959
Query: 405 tagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcagg 448
|||||||| || || || || |||| || || |||||||||||
Sbjct: 54960 tagaaccgcgctcgaaacgcagccagatgcgcatagtatgcagg 55003
Score = 71.9 bits (36), Expect = 4e-010
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 580 cctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||| ||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 55915 cctgaattccagcatggctacagaggtagaaatcaaactctgatgggtggca 55966
>dbj|AK060277.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-005-H07, full
insert sequence
Length = 1740
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 1114 gtgtagcaaaggttgtttgtcaatgtctgcatttcgtctgcagtgaaattgttctcatcc 1173
Query: 546 cagaggacatgggagtgagcaggcctactcgttccctgga 585
|| ||||| ||| ||||||| |||||||| ||||||||||
Sbjct: 1174 caaaggacgtggtagtgagctggcctacttgttccctgga 1213
Score = 54.0 bits (27), Expect = 9e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 374 cgtctggttgtccaacatctctggttccatgtagaaccgagcccgcaatgctgccaagtg 433
||||||||| ||| |||||||||| |||||||||||||| || || || || |||| ||
Sbjct: 789 cgtctggttctccgacatctctggctccatgtagaaccgcgctcgaaacgcagccagatg 848
Query: 434 tgcgtagtatgcagg 448
|| |||||||||||
Sbjct: 849 cgcatagtatgcagg 863
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0417D05
Length = 165752
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Minus
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 113506 gtgtagcaaaggttgtttgtcaatgtctgcatttcgtctgcagtgaaattgttctcatcc 113447
Query: 546 cagaggacatgggagtgagcaggcctactcgttccctgga 585
|| ||||| ||| ||||||| |||||||| ||||||||||
Sbjct: 113446 caaaggacgtggtagtgagctggcctacttgttccctgga 113407
Score = 99.6 bits (50), Expect = 2e-018
Identities = 136/164 (82%), Gaps = 3/164 (1%)
Strand = Plus / Minus
Query: 288 cagtagaacatcatccttttcaccttctccttcacagcaggcaggggcttcaccgagact 347
||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 113920 cagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccgaggtt 113861
Query: 348 ccgctcgggccattggaggtcttggacgtc---tggttgtccaacatctctggttccatg 404
||| ||| ||| ||||| |||| |||||| ||||| ||| |||||||||| ||||||
Sbjct: 113860 ccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctccatg 113801
Query: 405 tagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcagg 448
|||||||| || || || || |||| || || |||||||||||
Sbjct: 113800 tagaaccgcgctcgaaacgcagccagatgcgcatagtatgcagg 113757
Score = 71.9 bits (36), Expect = 4e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 580 cctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||| ||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 112845 cctgaattccagcatggctacagaggtagaaatcaaactctgatgggtggca 112794
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Minus
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 628343 gtgtagcaaaggttgtttgtcaatgtctgcatttcgtctgcagtgaaattgttctcatcc 628284
Query: 546 cagaggacatgggagtgagcaggcctactcgttccctgga 585
|| ||||| ||| ||||||| |||||||| ||||||||||
Sbjct: 628283 caaaggacgtggtagtgagctggcctacttgttccctgga 628244
Score = 99.6 bits (50), Expect = 2e-018
Identities = 136/164 (82%), Gaps = 3/164 (1%)
Strand = Plus / Minus
Query: 288 cagtagaacatcatccttttcaccttctccttcacagcaggcaggggcttcaccgagact 347
||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 628757 cagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccgaggtt 628698
Query: 348 ccgctcgggccattggaggtcttggacgtc---tggttgtccaacatctctggttccatg 404
||| ||| ||| ||||| |||| |||||| ||||| ||| |||||||||| ||||||
Sbjct: 628697 ccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctccatg 628638
Query: 405 tagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcagg 448
|||||||| || || || || |||| || || |||||||||||
Sbjct: 628637 tagaaccgcgctcgaaacgcagccagatgcgcatagtatgcagg 628594
Score = 71.9 bits (36), Expect = 4e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 580 cctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||| ||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 627682 cctgaattccagcatggctacagaggtagaaatcaaactctgatgggtggca 627631
>gb|AACV01014478.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014478, whole
genome shotgun sequence
Length = 23138
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Minus
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 4889 gtgtagcaaaggttgtttgtcaatgtctgcatttcgtctgcagtgaaattgttctcatcc 4830
Query: 546 cagaggacatgggagtgagcaggcctactcgttccctgga 585
|| ||||| ||| ||||||| |||||||| ||||||||||
Sbjct: 4829 caaaggacgtggtagtgagctggcctacttgttccctgga 4790
Score = 99.6 bits (50), Expect = 2e-018
Identities = 136/164 (82%), Gaps = 3/164 (1%)
Strand = Plus / Minus
Query: 288 cagtagaacatcatccttttcaccttctccttcacagcaggcaggggcttcaccgagact 347
||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 5303 cagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccgaggtt 5244
Query: 348 ccgctcgggccattggaggtcttggacgtc---tggttgtccaacatctctggttccatg 404
||| ||| ||| ||||| |||| |||||| ||||| ||| |||||||||| ||||||
Sbjct: 5243 ccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctccatg 5184
Query: 405 tagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcagg 448
|||||||| || || || || |||| || || |||||||||||
Sbjct: 5183 tagaaccgcgctcgaaacgcagccagatgcgcatagtatgcagg 5140
Score = 71.9 bits (36), Expect = 4e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 580 cctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||| ||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 4228 cctgaattccagcatggctacagaggtagaaatcaaactctgatgggtggca 4177
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Minus
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 4503953 gtgtagcaaaggttgtttgtcaatgtctgcatttcgtctgcagtgaaattgttctcatcc 4503894
Query: 546 cagaggacatgggagtgagcaggcctactcgttccctgga 585
|| ||||| ||| ||||||| |||||||| ||||||||||
Sbjct: 4503893 caaaggacgtggtagtgagctggcctacttgttccctgga 4503854
Score = 99.6 bits (50), Expect = 2e-018
Identities = 136/164 (82%), Gaps = 3/164 (1%)
Strand = Plus / Minus
Query: 288 cagtagaacatcatccttttcaccttctccttcacagcaggcaggggcttcaccgagact 347
||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 4504367 cagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccgaggtt 4504308
Query: 348 ccgctcgggccattggaggtcttggacgtc---tggttgtccaacatctctggttccatg 404
||| ||| ||| ||||| |||| |||||| ||||| ||| |||||||||| ||||||
Sbjct: 4504307 ccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctccatg 4504248
Query: 405 tagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcagg 448
|||||||| || || || || |||| || || |||||||||||
Sbjct: 4504247 tagaaccgcgctcgaaacgcagccagatgcgcatagtatgcagg 4504204
Score = 71.9 bits (36), Expect = 4e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 580 cctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||| ||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 4503292 cctgaattccagcatggctacagaggtagaaatcaaactctgatgggtggca 4503241
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Minus
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 22202690 gtgtagcaaaggttgtttgtcaatgtctgcatttcgtctgcagtgaaattgttctcatcc 22202631
Query: 546 cagaggacatgggagtgagcaggcctactcgttccctgga 585
|| ||||| ||| ||||||| |||||||| ||||||||||
Sbjct: 22202630 caaaggacgtggtagtgagctggcctacttgttccctgga 22202591
Score = 99.6 bits (50), Expect = 2e-018
Identities = 136/164 (82%), Gaps = 3/164 (1%)
Strand = Plus / Minus
Query: 288 cagtagaacatcatccttttcaccttctccttcacagcaggcaggggcttcaccgagact 347
||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 22203104 cagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccgaggtt 22203045
Query: 348 ccgctcgggccattggaggtcttggacgtc---tggttgtccaacatctctggttccatg 404
||| ||| ||| ||||| |||| |||||| ||||| ||| |||||||||| ||||||
Sbjct: 22203044 ccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctccatg 22202985
Query: 405 tagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcagg 448
|||||||| || || || || |||| || || |||||||||||
Sbjct: 22202984 tagaaccgcgctcgaaacgcagccagatgcgcatagtatgcagg 22202941
Score = 71.9 bits (36), Expect = 4e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 580 cctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||| ||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 22202029 cctgaattccagcatggctacagaggtagaaatcaaactctgatgggtggca 22201978
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 135 bits (68), Expect = 3e-029
Identities = 92/100 (92%)
Strand = Plus / Minus
Query: 486 gtgtagcaaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcc 545
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 23162858 gtgtagcaaaggttgtttgtcaatgtctgcatttcgtctgcagtgaaattgttctcatcc 23162799
Query: 546 cagaggacatgggagtgagcaggcctactcgttccctgga 585
|| ||||| ||| ||||||| |||||||| ||||||||||
Sbjct: 23162798 caaaggacgtggtagtgagctggcctacttgttccctgga 23162759
Score = 99.6 bits (50), Expect = 2e-018
Identities = 136/164 (82%), Gaps = 3/164 (1%)
Strand = Plus / Minus
Query: 288 cagtagaacatcatccttttcaccttctccttcacagcaggcaggggcttcaccgagact 347
||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||| |
Sbjct: 23163272 cagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccgaggtt 23163213
Query: 348 ccgctcgggccattggaggtcttggacgtc---tggttgtccaacatctctggttccatg 404
||| ||| ||| ||||| |||| |||||| ||||| ||| |||||||||| ||||||
Sbjct: 23163212 ccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctccatg 23163153
Query: 405 tagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcagg 448
|||||||| || || || || |||| || || |||||||||||
Sbjct: 23163152 tagaaccgcgctcgaaacgcagccagatgcgcatagtatgcagg 23163109
Score = 71.9 bits (36), Expect = 4e-010
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 580 cctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||| ||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 23162197 cctgaattccagcatggctacagaggtagaaatcaaactctgatgggtggca 23162146
>gb|CB644930.1|CB644930 OSJNEb06F17.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06F17 5', mRNA sequence
Length = 788
Score = 81.8 bits (41), Expect = 4e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|||||||| || || |||||||||||||| || ||||| | |||||||| | || |||
Sbjct: 544 tcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggcttgtt 603
Query: 579 ccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||| || |||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 604 ccctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggca 656
>gb|CB664150.1|CB664150 OSJNEd09L10.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd09L10 3', mRNA sequence
Length = 771
Score = 81.8 bits (41), Expect = 4e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|||||||| || || |||||||||||||| || ||||| | |||||||| | || |||
Sbjct: 553 tcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggcttgtt 612
Query: 579 ccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||| || |||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 613 ccctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggca 665
>gb|CB670123.1|CB670123 OSJNEe03A22.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03A22 3', mRNA sequence
Length = 744
Score = 81.8 bits (41), Expect = 4e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|||||||| || || |||||||||||||| || ||||| | |||||||| | || |||
Sbjct: 524 tcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggcttgtt 583
Query: 579 ccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||| || |||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 584 ccctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggca 636
>gb|CB670855.1|CB670855 OSJNEe04C12.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04C12 3', mRNA sequence
Length = 701
Score = 81.8 bits (41), Expect = 4e-013
Identities = 191/241 (79%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| |||||||| || ||||| || || |||||||| || || ||||| |||||||
Sbjct: 412 tctctggctccatgtaaaagcgagctcggaaggctgccaaatgagcatagtacgcaggag 471
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatg 510
| |||| | || ||||| ||||||| ||||| |||||||| | |||||| | | |
Sbjct: 472 gcacaattgatacagagcgagtgcaccttgcatacgtgtagcacaagttgttcgtgaggg 531
Query: 511 gctgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcc 570
|||| |||||||| || || |||||||||||||| || ||||| | |||||||| |
Sbjct: 532 tttgcaactcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggac 591
Query: 571 tactcgttccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggc 630
|| |||||||| || |||||||| ||||| ||||| ||||||||||| ||||| ||||
Sbjct: 592 ggcttgttccctgtatgccagcatggctacacaggtaaaaatcaaactcggttggatggc 651
Query: 631 a 631
|
Sbjct: 652 a 652
>dbj|AK111504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B21, full
insert sequence
Length = 3746
Score = 81.8 bits (41), Expect = 4e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|||||||| || || |||||||||||||| || ||||| | |||||||| | || |||
Sbjct: 3252 tcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggcttgtt 3193
Query: 579 ccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||| || |||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 3192 ccctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggca 3140
>dbj|AK111587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091C01, full
insert sequence
Length = 3746
Score = 81.8 bits (41), Expect = 4e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|||||||| || || |||||||||||||| || ||||| | |||||||| | || |||
Sbjct: 3167 tcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggcttgtt 3108
Query: 579 ccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||| || |||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 3107 ccctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggca 3055
>dbj|AK111996.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-A12, full
insert sequence
Length = 3641
Score = 81.8 bits (41), Expect = 4e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|||||||| || || |||||||||||||| || ||||| | |||||||| | || |||
Sbjct: 3069 tcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggcttgtt 3010
Query: 579 ccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||| || |||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 3009 ccctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggca 2957
>ref|XM_473529.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3306
Score = 81.8 bits (41), Expect = 4e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|||||||| || || |||||||||||||| || ||||| | |||||||| | || |||
Sbjct: 3029 tcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggcttgtt 2970
Query: 579 ccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||| || |||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 2969 ccctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggca 2917
>gb|CF312777.1|CF312777 ABF--08-K18.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-K18, mRNA sequence
Length = 602
Score = 73.8 bits (37), Expect = 1e-010
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|||||||| || || |||||||||||||| || ||||| | |||||||| | | |||
Sbjct: 533 tcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggcctgtt 474
Query: 579 ccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||| || |||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 473 ccctgtatgccagcatggctacacaggtagaaatcaaactcggttggatggca 421
>dbj|AG025273.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06503T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2724, genomic survey sequence
Length = 316
Score = 71.9 bits (36), Expect = 4e-010
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 580 cctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||| ||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 114 cctgaattccagcatggctacagaggtagaaatcaaactctgatgggtggca 165
>gb|CB653344.1|CB653344 OSJNEc04E11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04E11 3', mRNA sequence
Length = 825
Score = 63.9 bits (32), Expect = 1e-007
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 528 gtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggatt 587
||||| |||||||||||||| || ||||| | || ||||| | ||| |||||||| ||
Sbjct: 520 gtgaacttgttctcatcccacagaacatgataatgtgcagggcgacttgttccctgaatg 579
Query: 588 ccagcatgactacagaggtagaaatcaaactc 619
|| ||||| ||||| |||||||||||||||||
Sbjct: 580 cccgcatggctacacaggtagaaatcaaactc 611
>gb|CB665755.1|CB665755 OSJNEd12F14.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12F14 3', mRNA sequence
Length = 720
Score = 63.9 bits (32), Expect = 1e-007
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 528 gtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggatt 587
||||| |||||||||||||| || ||||| | || ||||| | ||| |||||||| ||
Sbjct: 529 gtgaacttgttctcatcccacagaacatgataatgtgcagggcgacttgttccctgaatg 588
Query: 588 ccagcatgactacagaggtagaaatcaaactc 619
|| ||||| ||||| |||||||||||||||||
Sbjct: 589 cccgcatggctacacaggtagaaatcaaactc 620
>dbj|AK111553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050D21, full
insert sequence
Length = 3747
Score = 63.9 bits (32), Expect = 1e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 528 gtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggatt 587
||||| |||||||||||||| || ||||| | || ||||| | ||| |||||||| ||
Sbjct: 3148 gtgaacttgttctcatcccacagaacatgataatgtgcagggcgacttgttccctgaatg 3089
Query: 588 ccagcatgactacagaggtagaaatcaaactc 619
|| ||||| ||||| |||||||||||||||||
Sbjct: 3088 cccgcatggctacacaggtagaaatcaaactc 3057
>dbj|AK112025.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C05, full
insert sequence
Length = 2043
Score = 63.9 bits (32), Expect = 1e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 528 gtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggatt 587
||||| |||||||||||||| || ||||| | || ||||| | ||| |||||||| ||
Sbjct: 1587 gtgaacttgttctcatcccacagaacatgataatgtgcagggcgacttgttccctgaatg 1528
Query: 588 ccagcatgactacagaggtagaaatcaaactc 619
|| ||||| ||||| |||||||||||||||||
Sbjct: 1527 cccgcatggctacacaggtagaaatcaaactc 1496
>dbj|AB155171.1| Oryza sativa (japonica cultivar-group) DNA, clone:T21104T, 3'
flanking sequence of Tos17 insertion in rice strain
NF3739, genomic survey sequence
Length = 733
Score = 61.9 bits (31), Expect = 4e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 585 attccagcatgactacagaggtagaaatcaaactc 619
||||||||||| |||||||||||||||||||||||
Sbjct: 678 attccagcatggctacagaggtagaaatcaaactc 644
>gb|AACV01010310.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010310, whole
genome shotgun sequence
Length = 13371
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 5402 ccagcatggctacacaggtagaaatcaaactcggttggatggca 5445
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 2177371 ccagcatggctacacaggtagaaatcaaactcggttggatggca 2177414
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 6217985 ccagcatggctacacaggtagaaatcaaactcggttggatggca 6218028
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 25362084 ccagcatggctacacaggtagaaatcaaactcggttggatggca 25362127
>emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02,
complete sequence
Length = 175163
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 49395 ccagcatggctacacaggtagaaatcaaactcggttggatggca 49438
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct: 28400720 ccagcatggctacacaggtagaaatcaaactcggttggatggca 28400763
>ref|NM_185035.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3177
Score = 54.0 bits (27), Expect = 9e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
||||| |||| ||||||||| | ||||||||| | |||| ||||| || || |||||
Sbjct: 2921 gctgtaaaatggttctcatcgtaaaggacatggtaatgagttggcctgctagtaccctgt 2862
Query: 585 attccagcatgactacagaggtagaaatcaaactc 619
|| |||||||| ||||| ||||||||||| |||||
Sbjct: 2861 atgccagcatggctacacaggtagaaatcgaactc 2827
>gb|CF312778.1|CF312778 ABF--08-K18.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-K18, mRNA sequence
Length = 661
Score = 52.0 bits (26), Expect = 4e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 519 tcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgtt 578
|||||||| || || |||||||||||||| || ||||| | |||||||| | | |||
Sbjct: 520 tcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggcctgtt 579
Query: 579 ccctggattccagcatgactacagaggtagaaat 612
||||| || |||||||| ||||| ||||||||||
Sbjct: 580 ccctgtatgccagcatggctacacaggtagaaat 613
>gb|C29031.1|C29031 C29031 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C63231_1A, mRNA sequence
Length = 334
Score = 50.1 bits (25), Expect = 0.001
Identities = 127/161 (78%)
Strand = Plus / Minus
Query: 465 gagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatttcgtct 524
||||| ||||||| ||||| ||||||||||||||||| | | ||||| | | ||
Sbjct: 209 gagcgagtgcaccttgcataggtgtagcaaaggttgttggtaagaatctgcaatgcatca 150
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| | |||||| | ||||| || | ||| || ||||
Sbjct: 149 gctgtgaagttgttttcatcccacaagacatgataatgagctggacgactagtaccctta 90
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgg 625
|| |||||||| ||||| |||||||| |||||||| |||||
Sbjct: 89 atgccagcatggctacacaggtagaagtcaaactcagttgg 49
>dbj|AK100285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075D23, full
insert sequence
Length = 3414
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 414 gcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaaca 458
||||| |||||||||| ||| |||||||| || ||||||||||||
Sbjct: 3098 gcccggaatgctgccaggtgagcgtagtaggctggagggacaaca 3054
>dbj|AK103279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124L10, full
insert sequence
Length = 3432
Score = 50.1 bits (25), Expect = 0.001
Identities = 127/161 (78%)
Strand = Plus / Minus
Query: 465 gagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatttcgtct 524
||||| ||||||| ||||| ||||||||||||||||| | | ||||| | | ||
Sbjct: 2953 gagcgagtgcaccttgcataggtgtagcaaaggttgttggtaagaatctgcaatgcatca 2894
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| | |||||| | ||||| || | ||| || ||||
Sbjct: 2893 gctgtgaagttgttttcatcccacaagacatgataatgagctggacgactagtaccctta 2834
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgg 625
|| |||||||| ||||| |||||||| |||||||| |||||
Sbjct: 2833 atgccagcatggctacacaggtagaagtcaaactcagttgg 2793
>ref|XM_468547.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3430
Score = 50.1 bits (25), Expect = 0.001
Identities = 127/161 (78%)
Strand = Plus / Minus
Query: 465 gagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatggctgcatttcgtct 524
||||| ||||||| ||||| ||||||||||||||||| | | ||||| | | ||
Sbjct: 2953 gagcgagtgcaccttgcataggtgtagcaaaggttgttggtaagaatctgcaatgcatca 2894
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| | |||||| | ||||| || | ||| || ||||
Sbjct: 2893 gctgtgaagttgttttcatcccacaagacatgataatgagctggacgactagtaccctta 2834
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgg 625
|| |||||||| ||||| |||||||| |||||||| |||||
Sbjct: 2833 atgccagcatggctacacaggtagaagtcaaactcagttgg 2793
>ref|XM_476934.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3414
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 414 gcccgcaatgctgccaagtgtgcgtagtatgcaggagggacaaca 458
||||| |||||||||| ||| |||||||| || ||||||||||||
Sbjct: 3098 gcccggaatgctgccaggtgagcgtagtaggctggagggacaaca 3054
>dbj|AK111500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000K24, full
insert sequence
Length = 3638
Score = 46.1 bits (23), Expect = 0.023
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| ||||| ||| | ||||| || | || || |||| |
Sbjct: 3062 gctgtgaagttgttttcatcccacaggacgtggtaatgagcgggacggcttgtgcccttg 3003
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||||||||| || || | | |||| ||||||||||| || |||||
Sbjct: 3002 attccagcatggctgcacaagaagaagtcaaactccgtaggatggca 2956
>dbj|AK111833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K18, full
insert sequence
Length = 1312
Score = 46.1 bits (23), Expect = 0.023
Identities = 86/107 (80%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
|||||||| ||||| |||||||| ||||| ||| | ||||| || | || || |||| |
Sbjct: 748 gctgtgaagttgttttcatcccacaggacgtggtaatgagcgggacggcttgtgcccttg 689
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
||||||||||| || || | | |||| ||||||||||| || |||||
Sbjct: 688 attccagcatggctgcacaagaagaagtcaaactccgtaggatggca 642
>dbj|AB081951.1| Oryza sativa (japonica cultivar-group) OsAGO1 mRNA for AGO1
homologous protein, complete cds
Length = 3306
Score = 44.1 bits (22), Expect = 0.090
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 465 gagcgtgtgcaccgggcataagtgtagcaaaggttgtt 502
||||| ||||||| ||||| |||||||||||||||||
Sbjct: 2804 gagcgagtgcaccttgcataggtgtagcaaaggttgtt 2767
>dbj|AP004188.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1493_H11
Length = 106693
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 591 gcatgactacagaggtagaaatcaaactc 619
||||| ||||| |||||||||||||||||
Sbjct: 64557 gcatggctacacaggtagaaatcaaactc 64585
>gb|AACV01005121.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005121, whole
genome shotgun sequence
Length = 43744
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 591 gcatgactacagaggtagaaatcaaactc 619
||||| ||||| |||||||||||||||||
Sbjct: 12714 gcatggctacacaggtagaaatcaaactc 12686
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 591 gcatgactacagaggtagaaatcaaactc 619
||||| ||||| |||||||||||||||||
Sbjct: 2514623 gcatggctacacaggtagaaatcaaactc 2514651
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 591 gcatgactacagaggtagaaatcaaactc 619
||||| ||||| |||||||||||||||||
Sbjct: 13781194 gcatggctacacaggtagaaatcaaactc 13781222
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 591 gcatgactacagaggtagaaatcaaactc 619
||||| ||||| |||||||||||||||||
Sbjct: 27234258 gcatggctacacaggtagaaatcaaactc 27234286
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 850,269
Number of Sequences: 438736
Number of extensions: 850269
Number of successful extensions: 4886
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4671
Number of HSP's gapped (non-prelim): 208
length of query: 631
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 610
effective length of database: 2,791,206,460
effective search space: 1702635940600
effective search space used: 1702635940600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)