BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191495.2.1
(1277 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK072792.1| Oryza sativa (japonica cultivar-group) cDNA... 101 9e-019
gb|AC107224.2| Oryza sativa (japonica cultivar-group) chrom... 101 9e-019
gb|AACV01005740.1| Oryza sativa (japonica cultivar-group) c... 101 9e-019
ref|NM_187639.1| Oryza sativa (japonica cultivar-group), p... 101 9e-019
ref|NM_187643.1| Oryza sativa (japonica cultivar-group), p... 101 9e-019
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 101 9e-019
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 101 9e-019
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 101 9e-019
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 101 9e-019
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 101 9e-019
gb|BP184832.1|BP184832 BP184832 pNS rice panicle cDNA, flow... 96 6e-017
gb|AACV01005737.1| Oryza sativa (japonica cultivar-group) c... 94 2e-016
gb|AU182569.1|AU182569 AU182569 Rice panicle at flowering s... 86 5e-014
dbj|AK070187.1| Oryza sativa (japonica cultivar-group) cDNA... 86 5e-014
dbj|AK099112.1| Oryza sativa (japonica cultivar-group) cDNA... 86 5e-014
gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15... 86 5e-014
gb|AACV01022050.1| Oryza sativa (japonica cultivar-group) c... 86 5e-014
ref|NM_197637.1| Oryza sativa (japonica cultivar-group) bet... 86 5e-014
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 86 5e-014
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 86 5e-014
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 86 5e-014
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 86 5e-014
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 86 5e-014
gb|AACV01005739.1| Oryza sativa (japonica cultivar-group) c... 80 3e-012
dbj|AK069853.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
gb|AACV01005738.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
ref|NM_187642.1| Oryza sativa (japonica cultivar-group), p... 74 2e-010
gb|AU063778.1|AU063778 AU063778 Rice panicle at flowering s... 72 8e-010
gb|AU311940.1|AU311940 AU311940 Oryza sativa anther cDNA Or... 72 8e-010
gb|AU165487.1|AU165487 AU165487 Rice panicle at flowering s... 68 1e-008
gb|C71918.1|C71918 C71918 Rice panicle at flowering stage O... 66 5e-008
gb|C72628.1|C72628 C72628 Rice panicle at flowering stage O... 66 5e-008
gb|C98558.1|C98558 C98558 Rice panicle at flowering stage O... 66 5e-008
gb|C72276.1|C72276 C72276 Rice panicle at flowering stage O... 62 8e-007
gb|C72950.1|C72950 C72950 Rice panicle at flowering stage O... 62 8e-007
gb|AU069745.1|AU069745 AU069745 Rice panicle at flowering s... 62 8e-007
gb|AU030829.1|AU030829 AU030829 Rice cDNA from immature lea... 54 2e-004
gb|CF276870.1|CF276870 14ETL--02-D03.b1 Rice etiolated leaf... 54 2e-004
gb|CF277133.1|CF277133 14ETL--02-I21.b1 Rice etiolated leaf... 54 2e-004
gb|CF293831.1|CF293831 30DGS--03-C11.b1 Rice leaf plasmid c... 54 2e-004
gb|CF311056.1|CF311056 ABF--06-C03.b1 ABF3-overexpressing t... 54 2e-004
gb|CF311548.1|CF311548 ABF--06-M21.g1 ABF3-overexpressing t... 54 2e-004
gb|CF328550.1|CF328550 NACL--03-I06.b1 Rice callus plasmid ... 54 2e-004
gb|CF332237.1|CF332237 NACL--08-K17.g1 Rice callus plasmid ... 54 2e-004
gb|CF333825.1|CF333825 JMT--02-N24.b1 AtJMT-overexpressing ... 54 2e-004
gb|CD670675.1|CD670675 OsMR090 5MT resistant rice mutant cD... 54 2e-004
gb|CV720797.1|CV720797 YBH--01-O04.b1 Rice before heading y... 54 2e-004
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 54 2e-004
dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK100959.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK105318.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11... 54 2e-004
gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I1... 54 2e-004
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 54 2e-004
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 54 2e-004
dbj|AP003875.3| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|AACV01005724.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AACV01017536.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
ref|NM_197698.1| Oryza sativa (japonica cultivar-group) bet... 54 2e-004
ref|NM_197700.1| Oryza sativa (japonica cultivar-group) bet... 54 2e-004
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 54 2e-004
gb|CH401229.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|C72059.1|C72059 C72059 Rice panicle at flowering stage O... 52 8e-004
gb|AU063919.1|AU063919 AU063919 Rice panicle at flowering s... 52 8e-004
gb|AU063925.1|AU063925 AU063925 Rice panicle at flowering s... 52 8e-004
gb|AU063981.1|AU063981 AU063981 Rice panicle at flowering s... 52 8e-004
gb|CD670632.1|CD670632 OsMR047 5MT resistant rice mutant cD... 52 8e-004
gb|AU093947.2|AU093947 AU093947 Rice panicle at flowering s... 52 8e-004
gb|AU094059.1|AU094059 AU094059 Rice panicle at flowering s... 50 0.003
gb|AU165453.1|AU165453 AU165453 Rice panicle at flowering s... 50 0.003
ref|NM_187641.1| Oryza sativa (japonica cultivar-group), p... 50 0.003
gb|AZ134444.1|AZ134444 OSJNBb0112C04f CUGI Rice BAC Library... 48 0.012
gb|D39077.1|D39077 RICR1787A Rice root Oryza sativa (japoni... 46 0.047
gb|C72448.1|C72448 C72448 Rice panicle at flowering stage O... 46 0.047
gb|C72914.1|C72914 C72914 Rice panicle at flowering stage O... 46 0.047
gb|AU094113.1|AU094113 AU094113 Rice panicle at flowering s... 46 0.047
gb|AU184759.1|AU184759 AU184759 Rice root Oryza sativa (jap... 46 0.047
gb|AU198282.1|AU198282 AU198282 Rice green shoot Oryza sati... 46 0.047
dbj|AK058895.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.047
dbj|AK061068.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.047
dbj|AK104128.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.047
ref|NM_197699.1| Oryza sativa (japonica cultivar-group) bet... 46 0.047
>dbj|AK072792.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142P17, full
insert sequence
Length = 1164
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Plus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 209 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 268
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 269 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 328
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 329 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 388
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 389 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 448
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 449 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 508
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 509 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 568
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 569 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 628
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 629 gtggaaatcaaggagaagggctccga 654
>gb|AC107224.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0009C08,
complete sequence
Length = 137033
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Minus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 107961 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 107902
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 107901 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 107842
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 107841 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 107782
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 107781 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 107722
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 107721 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 107662
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 107661 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 107602
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 107601 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 107542
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 107541 gtggaaatcaaggagaagggctccga 107516
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Plus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 92957 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 93016
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 93017 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 93076
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 93077 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 93136
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 93137 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 93196
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 93197 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 93256
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 93257 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 93316
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 93317 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 93376
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 93377 gtggaaatcaaggagaagggctccga 93402
Score = 79.8 bits (40), Expect = 3e-012
Identities = 297/383 (77%), Gaps = 6/383 (1%)
Strand = Plus / Plus
Query: 297 tgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatcaag 356
||||||||| ||||||||||||||| || ||| || || || |||||||||||||||
Sbjct: 97683 tgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatcaag 97742
Query: 357 tgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatgaac 416
||| ||||| || ||||||| ||||||||| | | ||| |||| |||||||||
Sbjct: 97743 tgctccaagccaaaggcatgctccgacaagcccgtccttatccacgtcaccgacatgaac 97802
Query: 417 tatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatggcc 476
| ||||| ||||| || ||||||||||| | ||| || ||||||||||||||
Sbjct: 97803 gacgagcccatcgctgcctaccacttcgacctcttcggccttgccttcggcgccatggct 97862
Query: 477 aagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccgaagg 536
||| | ||| |||| ||| |||| || ||||| ||||||||||||| | ||||||| |
Sbjct: 97863 aaggatggcaaggatgaggagctccgtaaggccggcatcatcgacacgtagttccgccgc 97922
Query: 537 gttaagtgcaagtac------gactccaaggtcaccttccaccttgaaaaggggtgcggc 590
| |||||||||||| ||| ||||| ||||||||||| | || |||| | | |
Sbjct: 97923 ttcaagtgcaagtaccctgccgacaccaagatcaccttccacatcgagaaggcctccaac 97982
Query: 591 cccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggcagtg 650
||||||||||| || ||||| ||||||||||||| || || |||||| | |||| |||
Sbjct: 97983 cccaactaccttgcactgctagtcaagtacgtcgctggtgatggtgacgtcgtggaggtg 98042
Query: 651 gacgtcaaggagaagggctccga 673
|| |||||||||||||||||||
Sbjct: 98043 gaaatcaaggagaagggctccga 98065
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggtacaag 260
||||| |||||||| | ||||||||| |||||||||||||| |||| || |||||||||
Sbjct: 103391 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 103450
Query: 261 gacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatcttcaag 320
||| | ||||| | |||||| ||||| | |||| ||||| ||| |||||||||
Sbjct: 103451 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 103510
Query: 321 gatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagtgctcc 380
||||| ||| || || |||||||| ||| ||||||| ||||| | || ||||||
Sbjct: 103511 gatggcaagggctgcggctcctgctttgaggtcaagtgttccaagccagaggcctgctcc 103570
Query: 381 ggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgtaccac 440
| ||||||||| | | |||||||| ||||||||| |||||||||||| || ||||||
Sbjct: 103571 gacaagcccgtcatcatccacatcaccgacatgaacactgagcctatcgccgcctaccac 103630
Query: 441 ttcga 445
|||||
Sbjct: 103631 ttcga 103635
Score = 48.1 bits (24), Expect = 0.012
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| |||| ||||| | | |||||||||| | || |||| ||||||
Sbjct: 103754 aaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaag 103813
Query: 618 tacgtcgacggcgacggtga 637
||||||| || ||||||||
Sbjct: 103814 tacgtcggtggtgacggtga 103833
>gb|AACV01005740.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005740,
whole genome shotgun sequence
Length = 10656
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Minus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 639 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 580
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 579 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 520
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 519 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 460
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 459 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 400
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 399 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 340
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 339 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 280
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 279 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 220
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 219 gtggaaatcaaggagaagggctccga 194
>ref|NM_187639.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 804
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Plus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 175 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 234
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 235 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 294
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 295 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 354
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 355 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 414
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 415 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 474
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 475 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 534
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 535 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 594
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 595 gtggaaatcaaggagaagggctccga 620
>ref|NM_187643.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 804
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Plus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 175 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 234
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 235 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 294
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 295 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 354
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 355 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 414
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 415 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 474
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 475 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 534
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 535 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 594
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 595 gtggaaatcaaggagaagggctccga 620
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Minus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 380431 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 380372
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 380371 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 380312
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 380311 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 380252
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 380251 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 380192
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 380191 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 380132
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 380131 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 380072
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 380071 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 380012
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 380011 gtggaaatcaaggagaagggctccga 379986
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Plus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 365427 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 365486
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 365487 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 365546
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 365547 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 365606
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 365607 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 365666
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 365667 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 365726
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 365727 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 365786
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 365787 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 365846
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 365847 gtggaaatcaaggagaagggctccga 365872
Score = 79.8 bits (40), Expect = 3e-012
Identities = 297/383 (77%), Gaps = 6/383 (1%)
Strand = Plus / Plus
Query: 297 tgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatcaag 356
||||||||| ||||||||||||||| || ||| || || || |||||||||||||||
Sbjct: 370153 tgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatcaag 370212
Query: 357 tgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatgaac 416
||| ||||| || ||||||| ||||||||| | | ||| |||| |||||||||
Sbjct: 370213 tgctccaagccaaaggcatgctccgacaagcccgtccttatccacgtcaccgacatgaac 370272
Query: 417 tatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatggcc 476
| ||||| ||||| || ||||||||||| | ||| || ||||||||||||||
Sbjct: 370273 gacgagcccatcgctgcctaccacttcgacctcttcggccttgccttcggcgccatggct 370332
Query: 477 aagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccgaagg 536
||| | ||| |||| ||| |||| || ||||| ||||||||||||| | ||||||| |
Sbjct: 370333 aaggatggcaaggatgaggagctccgtaaggccggcatcatcgacacgtagttccgccgc 370392
Query: 537 gttaagtgcaagtac------gactccaaggtcaccttccaccttgaaaaggggtgcggc 590
| |||||||||||| ||| ||||| ||||||||||| | || |||| | | |
Sbjct: 370393 ttcaagtgcaagtaccctgccgacaccaagatcaccttccacatcgagaaggcctccaac 370452
Query: 591 cccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggcagtg 650
||||||||||| || ||||| ||||||||||||| || || |||||| | |||| |||
Sbjct: 370453 cccaactaccttgcactgctagtcaagtacgtcgctggtgatggtgacgtcgtggaggtg 370512
Query: 651 gacgtcaaggagaagggctccga 673
|| |||||||||||||||||||
Sbjct: 370513 gaaatcaaggagaagggctccga 370535
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggtacaag 260
||||| |||||||| | ||||||||| |||||||||||||| |||| || |||||||||
Sbjct: 375861 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 375920
Query: 261 gacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatcttcaag 320
||| | ||||| | |||||| ||||| | |||| ||||| ||| |||||||||
Sbjct: 375921 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 375980
Query: 321 gatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagtgctcc 380
||||| ||| || || |||||||| ||| ||||||| ||||| | || ||||||
Sbjct: 375981 gatggcaagggctgcggctcctgctttgaggtcaagtgttccaagccagaggcctgctcc 376040
Query: 381 ggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgtaccac 440
| ||||||||| | | |||||||| ||||||||| |||||||||||| || ||||||
Sbjct: 376041 gacaagcccgtcatcatccacatcaccgacatgaacactgagcctatcgccgcctaccac 376100
Query: 441 ttcga 445
|||||
Sbjct: 376101 ttcga 376105
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 168669 ggcacggcgttcggcgccatggccaag 168695
Score = 48.1 bits (24), Expect = 0.012
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| |||| ||||| | | |||||||||| | || |||| ||||||
Sbjct: 376224 aaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaag 376283
Query: 618 tacgtcgacggcgacggtga 637
||||||| || ||||||||
Sbjct: 376284 tacgtcggtggtgacggtga 376303
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Minus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 397176 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 397117
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 397116 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 397057
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 397056 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 396997
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 396996 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 396937
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 396936 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 396877
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 396876 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 396817
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 396816 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 396757
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 396756 gtggaaatcaaggagaagggctccga 396731
Score = 93.7 bits (47), Expect = 2e-016
Identities = 175/218 (80%), Gaps = 6/218 (2%)
Strand = Plus / Minus
Query: 462 ttcggcgccatggccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgac 521
|||||||||||||| ||| | ||| |||| || |||| || ||||| ||||||||||||
Sbjct: 383650 ttcggcgccatggctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgac 383591
Query: 522 atgcagttccgaagggttaagtgcaagta------cgactccaaggtcaccttccacctt 575
| ||||||||| | || ||||||||||| |||| ||||| ||||||||||| |
Sbjct: 383590 acgcagttccgccgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatc 383531
Query: 576 gaaaaggggtgcggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggt 635
|| |||| | | |||||||||||| |||||||| ||||||||||||| || || |||
Sbjct: 383530 gagaaggcctccaaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggt 383471
Query: 636 gacattgtggcagtggacgtcaaggagaagggctccga 673
||| | |||| ||||| |||||||||||||||||||
Sbjct: 383470 gacgtcgtggaggtggaaatcaaggagaagggctccga 383433
Score = 79.8 bits (40), Expect = 3e-012
Identities = 297/383 (77%), Gaps = 6/383 (1%)
Strand = Plus / Minus
Query: 297 tgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatcaag 356
||||||||| ||||||||||||||| || ||| || || || |||||||||||||||
Sbjct: 393192 tgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatcaag 393133
Query: 357 tgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatgaac 416
||| ||||| || ||||||| ||||||||| | | ||| |||| |||||||||
Sbjct: 393132 tgctccaagccaaaggcatgctccgacaagcccgtccttatccacgtcaccgacatgaac 393073
Query: 417 tatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatggcc 476
| ||||| ||||| || ||||||||||| | ||| || ||||||||||||||
Sbjct: 393072 gacgagcccatcgctgcctaccacttcgacctcttcggccttgccttcggcgccatggct 393013
Query: 477 aagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccgaagg 536
||| | ||| |||| ||| |||| || ||||| ||||||||||||| | ||||||| |
Sbjct: 393012 aaggatggcaaggatgaggagctccgtaaggccggcatcatcgacacgtagttccgccgc 392953
Query: 537 gttaagtgcaagtac------gactccaaggtcaccttccaccttgaaaaggggtgcggc 590
| |||||||||||| ||| ||||| ||||||||||| | || |||| | | |
Sbjct: 392952 ttcaagtgcaagtaccctgccgacaccaagatcaccttccacatcgagaaggcctccaac 392893
Query: 591 cccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggcagtg 650
||||||||||| || ||||| ||||||||||||| || || |||||| | |||| |||
Sbjct: 392892 cccaactaccttgcactgctagtcaagtacgtcgctggtgatggtgacgtcgtggaggtg 392833
Query: 651 gacgtcaaggagaagggctccga 673
|| |||||||||||||||||||
Sbjct: 392832 gaaatcaaggagaagggctccga 392810
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Minus
Query: 201 tggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggtacaag 260
||||| |||||||| | ||||||||| |||||||||||||| |||| || |||||||||
Sbjct: 387717 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 387658
Query: 261 gacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatcttcaag 320
||| | ||||| | |||||| ||||| | |||| ||||| ||| |||||||||
Sbjct: 387657 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 387598
Query: 321 gatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagtgctcc 380
||||| ||| || || |||||||| ||| ||||||| ||||| | || ||||||
Sbjct: 387597 gatggcaagggctgcggctcctgctttgaggtcaagtgttccaagccagaggcctgctcc 387538
Query: 381 ggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgtaccac 440
| ||||||||| | | |||||||| ||||||||| |||||||||||| || ||||||
Sbjct: 387537 gacaagcccgtcatcatccacatcaccgacatgaacactgagcctatcgccgcctaccac 387478
Query: 441 ttcga 445
|||||
Sbjct: 387477 ttcga 387473
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 197907 ggcacggcgttcggcgccatggccaag 197933
Score = 48.1 bits (24), Expect = 0.012
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| |||| ||||| | | |||||||||| | || |||| ||||||
Sbjct: 387354 aaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaag 387295
Query: 618 tacgtcgacggcgacggtga 637
||||||| || ||||||||
Sbjct: 387294 tacgtcggtggtgacggtga 387275
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Minus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 589538 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 589479
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 589478 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 589419
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 589418 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 589359
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 589358 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 589299
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 589298 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 589239
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 589238 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 589179
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 589178 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 589119
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 589118 gtggaaatcaaggagaagggctccga 589093
Score = 93.7 bits (47), Expect = 2e-016
Identities = 175/218 (80%), Gaps = 6/218 (2%)
Strand = Plus / Minus
Query: 462 ttcggcgccatggccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgac 521
|||||||||||||| ||| | ||| |||| || |||| || ||||| ||||||||||||
Sbjct: 576012 ttcggcgccatggctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgac 575953
Query: 522 atgcagttccgaagggttaagtgcaagta------cgactccaaggtcaccttccacctt 575
| ||||||||| | || ||||||||||| |||| ||||| ||||||||||| |
Sbjct: 575952 acgcagttccgccgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatc 575893
Query: 576 gaaaaggggtgcggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggt 635
|| |||| | | |||||||||||| |||||||| ||||||||||||| || || |||
Sbjct: 575892 gagaaggcctccaaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggt 575833
Query: 636 gacattgtggcagtggacgtcaaggagaagggctccga 673
||| | |||| ||||| |||||||||||||||||||
Sbjct: 575832 gacgtcgtggaggtggaaatcaaggagaagggctccga 575795
Score = 79.8 bits (40), Expect = 3e-012
Identities = 297/383 (77%), Gaps = 6/383 (1%)
Strand = Plus / Minus
Query: 297 tgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatcaag 356
||||||||| ||||||||||||||| || ||| || || || |||||||||||||||
Sbjct: 585554 tgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatcaag 585495
Query: 357 tgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatgaac 416
||| ||||| || ||||||| ||||||||| | | ||| |||| |||||||||
Sbjct: 585494 tgctccaagccaaaggcatgctccgacaagcccgtccttatccacgtcaccgacatgaac 585435
Query: 417 tatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatggcc 476
| ||||| ||||| || ||||||||||| | ||| || ||||||||||||||
Sbjct: 585434 gacgagcccatcgctgcctaccacttcgacctcttcggccttgccttcggcgccatggct 585375
Query: 477 aagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccgaagg 536
||| | ||| |||| ||| |||| || ||||| ||||||||||||| | ||||||| |
Sbjct: 585374 aaggatggcaaggatgaggagctccgtaaggccggcatcatcgacacgtagttccgccgc 585315
Query: 537 gttaagtgcaagtac------gactccaaggtcaccttccaccttgaaaaggggtgcggc 590
| |||||||||||| ||| ||||| ||||||||||| | || |||| | | |
Sbjct: 585314 ttcaagtgcaagtaccctgccgacaccaagatcaccttccacatcgagaaggcctccaac 585255
Query: 591 cccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggcagtg 650
||||||||||| || ||||| ||||||||||||| || || |||||| | |||| |||
Sbjct: 585254 cccaactaccttgcactgctagtcaagtacgtcgctggtgatggtgacgtcgtggaggtg 585195
Query: 651 gacgtcaaggagaagggctccga 673
|| |||||||||||||||||||
Sbjct: 585194 gaaatcaaggagaagggctccga 585172
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Minus
Query: 201 tggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggtacaag 260
||||| |||||||| | ||||||||| |||||||||||||| |||| || |||||||||
Sbjct: 580079 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 580020
Query: 261 gacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatcttcaag 320
||| | ||||| | |||||| ||||| | |||| ||||| ||| |||||||||
Sbjct: 580019 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 579960
Query: 321 gatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagtgctcc 380
||||| ||| || || |||||||| ||| ||||||| ||||| | || ||||||
Sbjct: 579959 gatggcaagggctgcggctcctgctttgaggtcaagtgttccaagccagaggcctgctcc 579900
Query: 381 ggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgtaccac 440
| ||||||||| | | |||||||| ||||||||| |||||||||||| || ||||||
Sbjct: 579899 gacaagcccgtcatcatccacatcaccgacatgaacactgagcctatcgccgcctaccac 579840
Query: 441 ttcga 445
|||||
Sbjct: 579839 ttcga 579835
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 390269 ggcacggcgttcggcgccatggccaag 390295
Score = 48.1 bits (24), Expect = 0.012
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| |||| ||||| | | |||||||||| | || |||| ||||||
Sbjct: 579716 aaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaag 579657
Query: 618 tacgtcgacggcgacggtga 637
||||||| || ||||||||
Sbjct: 579656 tacgtcggtggtgacggtga 579637
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Minus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 380431 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 380372
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 380371 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 380312
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 380311 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 380252
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 380251 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 380192
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 380191 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 380132
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 380131 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 380072
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 380071 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 380012
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 380011 gtggaaatcaaggagaagggctccga 379986
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Plus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 365427 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 365486
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 365487 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 365546
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 365547 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 365606
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 365607 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 365666
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 365667 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 365726
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 365727 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 365786
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 365787 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 365846
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 365847 gtggaaatcaaggagaagggctccga 365872
Score = 79.8 bits (40), Expect = 3e-012
Identities = 297/383 (77%), Gaps = 6/383 (1%)
Strand = Plus / Plus
Query: 297 tgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatcaag 356
||||||||| ||||||||||||||| || ||| || || || |||||||||||||||
Sbjct: 370153 tgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatcaag 370212
Query: 357 tgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatgaac 416
||| ||||| || ||||||| ||||||||| | | ||| |||| |||||||||
Sbjct: 370213 tgctccaagccaaaggcatgctccgacaagcccgtccttatccacgtcaccgacatgaac 370272
Query: 417 tatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatggcc 476
| ||||| ||||| || ||||||||||| | ||| || ||||||||||||||
Sbjct: 370273 gacgagcccatcgctgcctaccacttcgacctcttcggccttgccttcggcgccatggct 370332
Query: 477 aagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccgaagg 536
||| | ||| |||| ||| |||| || ||||| ||||||||||||| | ||||||| |
Sbjct: 370333 aaggatggcaaggatgaggagctccgtaaggccggcatcatcgacacgtagttccgccgc 370392
Query: 537 gttaagtgcaagtac------gactccaaggtcaccttccaccttgaaaaggggtgcggc 590
| |||||||||||| ||| ||||| ||||||||||| | || |||| | | |
Sbjct: 370393 ttcaagtgcaagtaccctgccgacaccaagatcaccttccacatcgagaaggcctccaac 370452
Query: 591 cccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggcagtg 650
||||||||||| || ||||| ||||||||||||| || || |||||| | |||| |||
Sbjct: 370453 cccaactaccttgcactgctagtcaagtacgtcgctggtgatggtgacgtcgtggaggtg 370512
Query: 651 gacgtcaaggagaagggctccga 673
|| |||||||||||||||||||
Sbjct: 370513 gaaatcaaggagaagggctccga 370535
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggtacaag 260
||||| |||||||| | ||||||||| |||||||||||||| |||| || |||||||||
Sbjct: 375861 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 375920
Query: 261 gacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatcttcaag 320
||| | ||||| | |||||| ||||| | |||| ||||| ||| |||||||||
Sbjct: 375921 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 375980
Query: 321 gatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagtgctcc 380
||||| ||| || || |||||||| ||| ||||||| ||||| | || ||||||
Sbjct: 375981 gatggcaagggctgcggctcctgctttgaggtcaagtgttccaagccagaggcctgctcc 376040
Query: 381 ggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgtaccac 440
| ||||||||| | | |||||||| ||||||||| |||||||||||| || ||||||
Sbjct: 376041 gacaagcccgtcatcatccacatcaccgacatgaacactgagcctatcgccgcctaccac 376100
Query: 441 ttcga 445
|||||
Sbjct: 376101 ttcga 376105
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 168669 ggcacggcgttcggcgccatggccaag 168695
Score = 48.1 bits (24), Expect = 0.012
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| |||| ||||| | | |||||||||| | || |||| ||||||
Sbjct: 376224 aaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaag 376283
Query: 618 tacgtcgacggcgacggtga 637
||||||| || ||||||||
Sbjct: 376284 tacgtcggtggtgacggtga 376303
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Minus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 380433 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 380374
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 380373 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 380314
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 380313 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 380254
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 380253 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 380194
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 380193 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 380134
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 380133 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 380074
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 380073 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 380014
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 380013 gtggaaatcaaggagaagggctccga 379988
Score = 101 bits (51), Expect = 9e-019
Identities = 347/446 (77%), Gaps = 6/446 (1%)
Strand = Plus / Plus
Query: 234 gacaacggtggcggctgcgggtacaaggacgtgaacaagccccccttcaatagcatgggc 293
|||||||| |||| ||||||||||||||| || ||||| | |||||| ||||| |
Sbjct: 365429 gacaacggcggcgcctgcgggtacaaggatgtcgacaaggctcccttcctcggcatgaac 365488
Query: 294 gcatgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatc 353
| ||||||||| ||||||||||||||| || ||| || || || ||||||||||||
Sbjct: 365489 tcctgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatc 365548
Query: 354 aagtgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatg 413
|||||| ||||| | || ||||||| |||||||| | | ||| |||| ||||||
Sbjct: 365549 aagtgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatg 365608
Query: 414 aactatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatg 473
||| | ||||| ||||| || |||||||| || | | ||| || ||||||||||||
Sbjct: 365609 aacgacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatg 365668
Query: 474 gccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccga 533
|| ||| | ||| |||| || |||| || ||||| ||||||||||||| |||||||||
Sbjct: 365669 gctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgc 365728
Query: 534 agggttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgc 587
| || ||||||||||| |||| ||||| ||||||||||| | || |||| | |
Sbjct: 365729 cgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctcc 365788
Query: 588 ggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggca 647
|||||||||||| |||||||| ||||||||||||| || || |||||| | ||||
Sbjct: 365789 aaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggag 365848
Query: 648 gtggacgtcaaggagaagggctccga 673
||||| |||||||||||||||||||
Sbjct: 365849 gtggaaatcaaggagaagggctccga 365874
Score = 79.8 bits (40), Expect = 3e-012
Identities = 297/383 (77%), Gaps = 6/383 (1%)
Strand = Plus / Plus
Query: 297 tgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatcaag 356
||||||||| ||||||||||||||| || ||| || || || |||||||||||||||
Sbjct: 370155 tgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatcaag 370214
Query: 357 tgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatgaac 416
||| ||||| || ||||||| ||||||||| | | ||| |||| |||||||||
Sbjct: 370215 tgctccaagccaaaggcatgctccgacaagcccgtccttatccacgtcaccgacatgaac 370274
Query: 417 tatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatggcc 476
| ||||| ||||| || ||||||||||| | ||| || ||||||||||||||
Sbjct: 370275 gacgagcccatcgctgcctaccacttcgacctcttcggccttgccttcggcgccatggct 370334
Query: 477 aagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccgaagg 536
||| | ||| |||| ||| |||| || ||||| ||||||||||||| | ||||||| |
Sbjct: 370335 aaggatggcaaggatgaggagctccgtaaggccggcatcatcgacacgtagttccgccgc 370394
Query: 537 gttaagtgcaagtac------gactccaaggtcaccttccaccttgaaaaggggtgcggc 590
| |||||||||||| ||| ||||| ||||||||||| | || |||| | | |
Sbjct: 370395 ttcaagtgcaagtaccctgccgacaccaagatcaccttccacatcgagaaggcctccaac 370454
Query: 591 cccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggcagtg 650
||||||||||| || ||||| ||||||||||||| || || |||||| | |||| |||
Sbjct: 370455 cccaactaccttgcactgctagtcaagtacgtcgctggtgatggtgacgtcgtggaggtg 370514
Query: 651 gacgtcaaggagaagggctccga 673
|| |||||||||||||||||||
Sbjct: 370515 gaaatcaaggagaagggctccga 370537
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggtacaag 260
||||| |||||||| | ||||||||| |||||||||||||| |||| || |||||||||
Sbjct: 375863 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 375922
Query: 261 gacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatcttcaag 320
||| | ||||| | |||||| ||||| | |||| ||||| ||| |||||||||
Sbjct: 375923 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 375982
Query: 321 gatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagtgctcc 380
||||| ||| || || |||||||| ||| ||||||| ||||| | || ||||||
Sbjct: 375983 gatggcaagggctgcggctcctgctttgaggtcaagtgttccaagccagaggcctgctcc 376042
Query: 381 ggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgtaccac 440
| ||||||||| | | |||||||| ||||||||| |||||||||||| || ||||||
Sbjct: 376043 gacaagcccgtcatcatccacatcaccgacatgaacactgagcctatcgccgcctaccac 376102
Query: 441 ttcga 445
|||||
Sbjct: 376103 ttcga 376107
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 168669 ggcacggcgttcggcgccatggccaag 168695
Score = 48.1 bits (24), Expect = 0.012
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| |||| ||||| | | |||||||||| | || |||| ||||||
Sbjct: 376226 aaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaag 376285
Query: 618 tacgtcgacggcgacggtga 637
||||||| || ||||||||
Sbjct: 376286 tacgtcggtggtgacggtga 376305
>gb|BP184832.1|BP184832 BP184832 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 19YPR012, mRNA
sequence
Length = 629
Score = 95.6 bits (48), Expect = 6e-017
Identities = 299/383 (78%), Gaps = 6/383 (1%)
Strand = Plus / Plus
Query: 297 tgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatcaag 356
||||||||| ||||||||||||||| || ||| || || || |||||||||||||||
Sbjct: 57 tgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatcaag 116
Query: 357 tgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatgaac 416
||| ||||| | || ||||||| |||||||| | | ||| |||| |||||||||
Sbjct: 117 tgctccaagccggaggcctgctccgacaagcccgcccttatccacgtcaccgacatgaac 176
Query: 417 tatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatggcc 476
| ||||| ||||| || |||||||| || | | ||| || ||||||||||||||
Sbjct: 177 gacgagcccatcgctgcctaccactttgacctctccggccttgccttcggcgccatggct 236
Query: 477 aagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccgaagg 536
||| | ||| |||| || |||| || ||||| ||||||||||||| ||||||||| |
Sbjct: 237 aaggatggcaaggacgaagagctccgtaaggccggcatcatcgacacgcagttccgccgc 296
Query: 537 gttaagtgcaagta------cgactccaaggtcaccttccaccttgaaaaggggtgcggc 590
|| ||||||||||| |||| ||||| ||||||||||| | || |||| | | |
Sbjct: 297 gtcaagtgcaagtatcctgccgacaccaagatcaccttccacatcgagaaggcctccaac 356
Query: 591 cccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggcagtg 650
||||||||||| |||||||| ||||||||||||| || || |||||| | |||| |||
Sbjct: 357 cccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggaggtg 416
Query: 651 gacgtcaaggagaagggctccga 673
|| |||||||||||||||||||
Sbjct: 417 gaaatcaaggagaagggctccga 439
>gb|AACV01005737.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005737,
whole genome shotgun sequence
Length = 580
Score = 93.7 bits (47), Expect = 2e-016
Identities = 175/218 (80%), Gaps = 6/218 (2%)
Strand = Plus / Plus
Query: 462 ttcggcgccatggccaagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgac 521
|||||||||||||| ||| | ||| |||| || |||| || ||||| ||||||||||||
Sbjct: 168 ttcggcgccatggctaaggatggcaaggacgaagagctccgtaaggccggcatcatcgac 227
Query: 522 atgcagttccgaagggttaagtgcaagta------cgactccaaggtcaccttccacctt 575
| ||||||||| | || ||||||||||| |||| ||||| ||||||||||| |
Sbjct: 228 acgcagttccgccgcgtcaagtgcaagtatcctgccgacaccaagatcaccttccacatc 287
Query: 576 gaaaaggggtgcggccccaactacctggcgctgctggtcaagtacgtcgacggcgacggt 635
|| |||| | | |||||||||||| |||||||| ||||||||||||| || || |||
Sbjct: 288 gagaaggcctccaaccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggt 347
Query: 636 gacattgtggcagtggacgtcaaggagaagggctccga 673
||| | |||| ||||| |||||||||||||||||||
Sbjct: 348 gacgtcgtggaggtggaaatcaaggagaagggctccga 385
>gb|AU182569.1|AU182569 AU182569 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4331, mRNA sequence
Length = 445
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| |||
Sbjct: 143 catcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccggcaaggc 202
Query: 461 gttcggcgccatggc 475
|||||||||||||||
Sbjct: 203 gttcggcgccatggc 217
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 496 agctgcgcaaggcgggcatcatcgacatgcagttc 530
|||| |||||||| |||||||||||||||||||||
Sbjct: 238 agctccgcaaggccggcatcatcgacatgcagttc 272
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| | || ||||| | | |||||||||||| || |||| ||||||
Sbjct: 306 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 365
Query: 618 tacgtcgacggcgacggtgac 638
| ||||| || ||||||||||
Sbjct: 366 ttcgtcgccgacgacggtgac 386
>dbj|AK070187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043G12, full
insert sequence
Length = 1121
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| |||
Sbjct: 415 catcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccggcaaggc 474
Query: 461 gttcggcgccatggc 475
|||||||||||||||
Sbjct: 475 gttcggcgccatggc 489
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 496 agctgcgcaaggcgggcatcatcgacatgcagttc 530
|||| |||||||| |||||||||||||||||||||
Sbjct: 510 agctccgcaaggccggcatcatcgacatgcagttc 544
>dbj|AK099112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033P05, full
insert sequence
Length = 1071
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| |||
Sbjct: 415 catcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccggcaaggc 474
Query: 461 gttcggcgccatggc 475
|||||||||||||||
Sbjct: 475 gttcggcgccatggc 489
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 496 agctgcgcaaggcgggcatcatcgacatgcagttc 530
|||| |||||||| |||||||||||||||||||||
Sbjct: 510 agctccgcaaggccggcatcatcgacatgcagttc 544
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| | || ||||| | | |||||||||||| || |||| ||||||
Sbjct: 578 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 637
Query: 618 tacgtcgacggcgacggtgac 638
| ||||| || ||||||||||
Sbjct: 638 ttcgtcgccgacgacggtgac 658
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
sequence
Length = 158550
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| |||
Sbjct: 117484 catcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccggcaaggc 117425
Query: 461 gttcggcgccatggc 475
|||||||||||||||
Sbjct: 117424 gttcggcgccatggc 117410
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 496 agctgcgcaaggcgggcatcatcgacatgcagttc 530
|||| |||||||| |||||||||||||||||||||
Sbjct: 117389 agctccgcaaggccggcatcatcgacatgcagttc 117355
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| | || ||||| | | |||||||||||| || |||| ||||||
Sbjct: 117321 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 117262
Query: 618 tacgtcgacggcgacggtgac 638
| ||||| || ||||||||||
Sbjct: 117261 ttcgtcgccgacgacggtgac 117241
>gb|AACV01022050.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022050, whole
genome shotgun sequence
Length = 7523
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| |||
Sbjct: 1394 catcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccggcaaggc 1335
Query: 461 gttcggcgccatggc 475
|||||||||||||||
Sbjct: 1334 gttcggcgccatggc 1320
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 496 agctgcgcaaggcgggcatcatcgacatgcagttc 530
|||| |||||||| |||||||||||||||||||||
Sbjct: 1299 agctccgcaaggccggcatcatcgacatgcagttc 1265
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| | || ||||| | | |||||||||||| || |||| ||||||
Sbjct: 1231 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 1172
Query: 618 tacgtcgacggcgacggtgac 638
| ||||| || ||||||||||
Sbjct: 1171 ttcgtcgccgacgacggtgac 1151
>ref|NM_197637.1| Oryza sativa (japonica cultivar-group) beta-expansin
(OSJNBa0082M15.4), mRNA
Length = 1148
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| |||
Sbjct: 399 catcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccggcaaggc 458
Query: 461 gttcggcgccatggc 475
|||||||||||||||
Sbjct: 459 gttcggcgccatggc 473
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 496 agctgcgcaaggcgggcatcatcgacatgcagttc 530
|||| |||||||| |||||||||||||||||||||
Sbjct: 494 agctccgcaaggccggcatcatcgacatgcagttc 528
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| | || ||||| | | |||||||||||| || |||| ||||||
Sbjct: 562 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 621
Query: 618 tacgtcgacggcgacggtgac 638
| ||||| || ||||||||||
Sbjct: 622 ttcgtcgccgacgacggtgac 642
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| |||
Sbjct: 2869101 catcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccggcaaggc 2869160
Query: 461 gttcggcgccatggc 475
|||||||||||||||
Sbjct: 2869161 gttcggcgccatggc 2869175
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 3251997 ggcacggcgttcggcgccatggccaag 3251971
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 3233920 ggcacggcgttcggcgccatggccaag 3233894
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 496 agctgcgcaaggcgggcatcatcgacatgcagttc 530
|||| |||||||| |||||||||||||||||||||
Sbjct: 2869196 agctccgcaaggccggcatcatcgacatgcagttc 2869230
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| | || ||||| | | |||||||||||| || |||| ||||||
Sbjct: 2869264 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 2869323
Query: 618 tacgtcgacggcgacggtgac 638
| ||||| || ||||||||||
Sbjct: 2869324 ttcgtcgccgacgacggtgac 2869344
Score = 46.1 bits (23), Expect = 0.047
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggc 475
|||||||||||||||||||||||
Sbjct: 3239779 ggcacggcgttcggcgccatggc 3239757
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| |||
Sbjct: 8898815 catcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccggcaaggc 8898874
Query: 461 gttcggcgccatggc 475
|||||||||||||||
Sbjct: 8898875 gttcggcgccatggc 8898889
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 9305156 ggcacggcgttcggcgccatggccaag 9305130
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 9287079 ggcacggcgttcggcgccatggccaag 9287053
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 496 agctgcgcaaggcgggcatcatcgacatgcagttc 530
|||| |||||||| |||||||||||||||||||||
Sbjct: 8898910 agctccgcaaggccggcatcatcgacatgcagttc 8898944
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| | || ||||| | | |||||||||||| || |||| ||||||
Sbjct: 8898978 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 8899037
Query: 618 tacgtcgacggcgacggtgac 638
| ||||| || ||||||||||
Sbjct: 8899038 ttcgtcgccgacgacggtgac 8899058
Score = 46.1 bits (23), Expect = 0.047
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggc 475
|||||||||||||||||||||||
Sbjct: 9292938 ggcacggcgttcggcgccatggc 9292916
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| |||
Sbjct: 19764609 catcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccggcaaggc 19764668
Query: 461 gttcggcgccatggc 475
|||||||||||||||
Sbjct: 19764669 gttcggcgccatggc 19764683
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 20170950 ggcacggcgttcggcgccatggccaag 20170924
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 20152873 ggcacggcgttcggcgccatggccaag 20152847
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 496 agctgcgcaaggcgggcatcatcgacatgcagttc 530
|||| |||||||| |||||||||||||||||||||
Sbjct: 19764704 agctccgcaaggccggcatcatcgacatgcagttc 19764738
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| | || ||||| | | |||||||||||| || |||| ||||||
Sbjct: 19764772 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 19764831
Query: 618 tacgtcgacggcgacggtgac 638
| ||||| || ||||||||||
Sbjct: 19764832 ttcgtcgccgacgacggtgac 19764852
Score = 46.1 bits (23), Expect = 0.047
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggc 475
|||||||||||||||||||||||
Sbjct: 20158732 ggcacggcgttcggcgccatggc 20158710
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| |||
Sbjct: 20946907 catcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccggcaaggc 20946966
Query: 461 gttcggcgccatggc 475
|||||||||||||||
Sbjct: 20946967 gttcggcgccatggc 20946981
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 21329803 ggcacggcgttcggcgccatggccaag 21329777
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 21311726 ggcacggcgttcggcgccatggccaag 21311700
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 496 agctgcgcaaggcgggcatcatcgacatgcagttc 530
|||| |||||||| |||||||||||||||||||||
Sbjct: 20947002 agctccgcaaggccggcatcatcgacatgcagttc 20947036
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| | || ||||| | | |||||||||||| || |||| ||||||
Sbjct: 20947070 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 20947129
Query: 618 tacgtcgacggcgacggtgac 638
| ||||| || ||||||||||
Sbjct: 20947130 ttcgtcgccgacgacggtgac 20947150
Score = 46.1 bits (23), Expect = 0.047
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggc 475
|||||||||||||||||||||||
Sbjct: 21317585 ggcacggcgttcggcgccatggc 21317563
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 85.7 bits (43), Expect = 5e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| |||
Sbjct: 20958171 catcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccggcaaggc 20958230
Query: 461 gttcggcgccatggc 475
|||||||||||||||
Sbjct: 20958231 gttcggcgccatggc 20958245
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 21341067 ggcacggcgttcggcgccatggccaag 21341041
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 21322990 ggcacggcgttcggcgccatggccaag 21322964
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 496 agctgcgcaaggcgggcatcatcgacatgcagttc 530
|||| |||||||| |||||||||||||||||||||
Sbjct: 20958266 agctccgcaaggccggcatcatcgacatgcagttc 20958300
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| | || ||||| | | |||||||||||| || |||| ||||||
Sbjct: 20958334 aaggtcaccttccacgtcgagaagggctccaaccccaactacctcgccgtgctcgtcaag 20958393
Query: 618 tacgtcgacggcgacggtgac 638
| ||||| || ||||||||||
Sbjct: 20958394 ttcgtcgccgacgacggtgac 20958414
Score = 46.1 bits (23), Expect = 0.047
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggc 475
|||||||||||||||||||||||
Sbjct: 21328849 ggcacggcgttcggcgccatggc 21328827
>gb|AACV01005739.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005739,
whole genome shotgun sequence
Length = 3939
Score = 79.8 bits (40), Expect = 3e-012
Identities = 297/383 (77%), Gaps = 6/383 (1%)
Strand = Plus / Minus
Query: 297 tgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatcaag 356
||||||||| ||||||||||||||| || ||| || || || |||||||||||||||
Sbjct: 644 tgcggcaacgaccccatcttcaaggacggcaagggctgcggctcatgcttcgagatcaag 585
Query: 357 tgcgataagcctgtggagtgctccggcaagcccgtggtggtgcacatcacggacatgaac 416
||| ||||| || ||||||| ||||||||| | | ||| |||| |||||||||
Sbjct: 584 tgctccaagccaaaggcatgctccgacaagcccgtccttatccacgtcaccgacatgaac 525
Query: 417 tatgagcctatcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatggcc 476
| ||||| ||||| || ||||||||||| | ||| || ||||||||||||||
Sbjct: 524 gacgagcccatcgctgcctaccacttcgacctcttcggccttgccttcggcgccatggct 465
Query: 477 aagaagggcgaggaggagaagctgcgcaaggcgggcatcatcgacatgcagttccgaagg 536
||| | ||| |||| ||| |||| || ||||| ||||||||||||| | ||||||| |
Sbjct: 464 aaggatggcaaggatgaggagctccgtaaggccggcatcatcgacacgtagttccgccgc 405
Query: 537 gttaagtgcaagtac------gactccaaggtcaccttccaccttgaaaaggggtgcggc 590
| |||||||||||| ||| ||||| ||||||||||| | || |||| | | |
Sbjct: 404 ttcaagtgcaagtaccctgccgacaccaagatcaccttccacatcgagaaggcctccaac 345
Query: 591 cccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggcagtg 650
||||||||||| || ||||| ||||||||||||| || || |||||| | |||| |||
Sbjct: 344 cccaactaccttgcactgctagtcaagtacgtcgctggtgatggtgacgtcgtggaggtg 285
Query: 651 gacgtcaaggagaagggctccga 673
|| |||||||||||||||||||
Sbjct: 284 gaaatcaaggagaagggctccga 262
>dbj|AK069853.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036C07, full
insert sequence
Length = 1101
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggtacaag 260
||||| |||||||| | ||||||||| |||||||||||||| |||| || |||||||||
Sbjct: 177 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 236
Query: 261 gacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatcttcaag 320
||| | ||||| | |||||| ||||| | |||| ||||| ||| |||||||||
Sbjct: 237 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 296
Query: 321 gatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagtgctcc 380
||||| ||| || || |||||||| ||| ||||||| ||||| | || ||||||
Sbjct: 297 gatggcaagggctgcggctcctgctttgaggtcaagtgttccaagccagaggcctgctcc 356
Query: 381 ggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgtaccac 440
| ||||||||| | | |||||||| ||||||||| |||||||||||| || ||||||
Sbjct: 357 gacaagcccgtcatcatccacatcaccgacatgaacactgagcctatcgccgcctaccac 416
Query: 441 ttcga 445
|||||
Sbjct: 417 ttcga 421
Score = 48.1 bits (24), Expect = 0.012
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| |||| ||||| | | |||||||||| | || |||| ||||||
Sbjct: 540 aaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaag 599
Query: 618 tacgtcgacggcgacggtga 637
||||||| || ||||||||
Sbjct: 600 tacgtcggtggtgacggtga 619
>gb|AACV01005738.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005738, whole
genome shotgun sequence
Length = 8631
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Minus
Query: 201 tggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggtacaag 260
||||| |||||||| | ||||||||| |||||||||||||| |||| || |||||||||
Sbjct: 3850 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 3791
Query: 261 gacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatcttcaag 320
||| | ||||| | |||||| ||||| | |||| ||||| ||| |||||||||
Sbjct: 3790 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 3731
Query: 321 gatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagtgctcc 380
||||| ||| || || |||||||| ||| ||||||| ||||| | || ||||||
Sbjct: 3730 gatggcaagggctgcggctcctgctttgaggtcaagtgttccaagccagaggcctgctcc 3671
Query: 381 ggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgtaccac 440
| ||||||||| | | |||||||| ||||||||| |||||||||||| || ||||||
Sbjct: 3670 gacaagcccgtcatcatccacatcaccgacatgaacactgagcctatcgccgcctaccac 3611
Query: 441 ttcga 445
|||||
Sbjct: 3610 ttcga 3606
Score = 48.1 bits (24), Expect = 0.012
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| |||| ||||| | | |||||||||| | || |||| ||||||
Sbjct: 3487 aaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaag 3428
Query: 618 tacgtcgacggcgacggtga 637
||||||| || ||||||||
Sbjct: 3427 tacgtcggtggtgacggtga 3408
>ref|NM_187642.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 804
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggtacaag 260
||||| |||||||| | ||||||||| |||||||||||||| |||| || |||||||||
Sbjct: 142 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 201
Query: 261 gacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatcttcaag 320
||| | ||||| | |||||| ||||| | |||| ||||| ||| |||||||||
Sbjct: 202 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 261
Query: 321 gatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagtgctcc 380
||||| ||| || || |||||||| ||| ||||||| ||||| | || ||||||
Sbjct: 262 gatggcaagggctgcggctcctgctttgaggtcaagtgttccaagccagaggcctgctcc 321
Query: 381 ggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgtaccac 440
| ||||||||| | | |||||||| ||||||||| |||||||||||| || ||||||
Sbjct: 322 gacaagcccgtcatcatccacatcaccgacatgaacactgagcctatcgccgcctaccac 381
Query: 441 ttcga 445
|||||
Sbjct: 382 ttcga 386
Score = 48.1 bits (24), Expect = 0.012
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 558 aaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtcaag 617
||||||||||||||| |||| ||||| | | |||||||||| | || |||| ||||||
Sbjct: 505 aaggtcaccttccacgttgagaagggctccaaccccaactactttgcagtgcttgtcaag 564
Query: 618 tacgtcgacggcgacggtga 637
||||||| || ||||||||
Sbjct: 565 tacgtcggtggtgacggtga 584
>gb|AU063778.1|AU063778 AU063778 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0445_5A, mRNA sequence
Length = 475
Score = 71.9 bits (36), Expect = 8e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| |||
Sbjct: 397 catcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccggcaaggc 456
Query: 461 gttcggcg 468
||||||||
Sbjct: 457 gttcggcg 464
>gb|AU311940.1|AU311940 AU311940 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1011, mRNA sequence
Length = 436
Score = 71.9 bits (36), Expect = 8e-010
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 590 ccccaactacctggcgctgctggtcaagtacgtcgacggcgacggtgacattgtggcagt 649
|||||||||||| |||||||| ||||||||||||| || || |||||| | |||| ||
Sbjct: 26 ccccaactaccttgcgctgctagtcaagtacgtcgctggtgatggtgacgtcgtggaggt 85
Query: 650 ggacgtcaaggagaagggctccga 673
||| |||||||||||||||||||
Sbjct: 86 ggaaatcaaggagaagggctccga 109
>gb|AU165487.1|AU165487 AU165487 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1554, mRNA sequence
Length = 492
Score = 67.9 bits (34), Expect = 1e-008
Identities = 67/77 (87%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcga--tttagcaggcacg 458
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| |
Sbjct: 396 catcacggacatgaactacgagcccatctcggcgtaccacttcgactttcttccggcaag 455
Query: 459 gcgttcggcgccatggc 475
|||||||||||||||||
Sbjct: 456 gcgttcggcgccatggc 472
>gb|C71918.1|C71918 C71918 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0610_1A, mRNA sequence
Length = 295
Score = 65.9 bits (33), Expect = 5e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcga 445
|||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct: 226 catcacggacatgaactacgagcccatctcggcgtaccacttcga 270
>gb|C72628.1|C72628 C72628 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1957_1A, mRNA sequence
Length = 456
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||||||||||||||| ||||| ||| |||||||||||||||| || | |||| ||
Sbjct: 320 catcacggacatgaactacgagcccatctcggcgtaccacttcgacttctccggcaaagc 379
Query: 461 gttcggcgc 469
|||||||||
Sbjct: 380 gttcggcgc 388
Score = 46.1 bits (23), Expect = 0.047
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 501 cgcaaggcgggcatcatcgacatgcagttc 530
|||||||| || ||||||||||||||||||
Sbjct: 419 cgcaaggccggnatcatcgacatgcagttc 448
>gb|C98558.1|C98558 C98558 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0407_5A, mRNA sequence
Length = 462
Score = 65.9 bits (33), Expect = 5e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcga 445
|||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct: 401 catcacggacatgaactacgagcccatctcggcgtaccacttcga 445
>gb|C72276.1|C72276 C72276 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1347_1A, mRNA sequence
Length = 443
Score = 61.9 bits (31), Expect = 8e-007
Identities = 189/242 (78%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggtacaag 260
||||| |||||||| | ||||||||| |||||||||||||| |||| || |||||||||
Sbjct: 161 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 220
Query: 261 gacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatcttcaag 320
||| | ||||| | |||||| ||||| | |||| ||||| ||| |||||||||
Sbjct: 221 gacattgacaaggctcccttcctcggcatgaactcatgtggcaatgaccctatcttcaag 280
Query: 321 gatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagtgctcc 380
||||| ||| || || |||||||| ||| ||||||| ||||| | || |||| |
Sbjct: 281 gatggcaagggctgcggctcctgctttgaggtcaagtgttccaagccagaggcctgctnc 340
Query: 381 ggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgtaccac 440
| ||||||||| | | |||||||| ||||||||| |||||||||||| || ||||||
Sbjct: 341 gacaagcccgtcatcatccacatcaccgacatgaacactgagcctatcgccgcctaccac 400
Query: 441 tt 442
||
Sbjct: 401 tt 402
>gb|C72950.1|C72950 C72950 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2534_2A, mRNA sequence
Length = 364
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggtacaag 260
||||| |||||||| | ||||||||| |||||||||||||| |||| || |||||||||
Sbjct: 150 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 209
Query: 261 gac 263
|||
Sbjct: 210 gac 212
>gb|AU069745.1|AU069745 AU069745 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1413_3A, mRNA sequence
Length = 395
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 201 tggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggtacaag 260
||||| |||||||| | ||||||||| |||||||||||||| |||| || |||||||||
Sbjct: 157 tggtacggcaagccaaagggtgccggccccgacgacaacggcggcgcttgtgggtacaag 216
Query: 261 gac 263
|||
Sbjct: 217 gac 219
>gb|AU030829.1|AU030829 AU030829 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60311_1A, mRNA sequence
Length = 378
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 133 ggcacggcgttcggcgccatggccaag 159
>gb|CF276870.1|CF276870 14ETL--02-D03.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-D03, mRNA sequence
Length = 581
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 503 ggcacggcgttcggcgccatggccaag 529
>gb|CF277133.1|CF277133 14ETL--02-I21.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-I21, mRNA sequence
Length = 602
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 527 ggcacggcgttcggcgccatggccaag 553
>gb|CF293831.1|CF293831 30DGS--03-C11.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--03-C11, mRNA sequence
Length = 632
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 506 ggcacggcgttcggcgccatggccaag 532
>gb|CF311056.1|CF311056 ABF--06-C03.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-C03, mRNA sequence
Length = 585
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 505 ggcacggcgttcggcgccatggccaag 531
>gb|CF311548.1|CF311548 ABF--06-M21.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-M21, mRNA sequence
Length = 583
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 505 ggcacggcgttcggcgccatggccaag 531
>gb|CF328550.1|CF328550 NACL--03-I06.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--03-I06, mRNA sequence
Length = 632
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 505 ggcacggcgttcggcgccatggccaag 531
>gb|CF332237.1|CF332237 NACL--08-K17.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--08-K17, mRNA sequence
Length = 587
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 512 ggcacggcgttcggcgccatggccaag 538
>gb|CF333825.1|CF333825 JMT--02-N24.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-N24, mRNA sequence
Length = 577
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 499 ggcacggcgttcggcgccatggccaag 525
>gb|CD670675.1|CD670675 OsMR090 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 636
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 519 ggcacggcgttcggcgccatggccaag 545
>gb|CV720797.1|CV720797 YBH--01-O04.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--01-O04, mRNA sequence
Length = 453
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 322 ggcacggcgttcggcgccatggccaag 348
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence
Length = 162241
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 93997 ggcacggcgttcggcgccatggccaag 93971
>dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G02, full
insert sequence
Length = 1027
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 405 ggcacggcgttcggcgccatggccaag 431
>dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D06, full
insert sequence
Length = 1259
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
|||||||||||||||||||||||||||
Sbjct: 512 ggcacggcgttcggcgccatggccaag 538
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,206,969
Number of Sequences: 438736
Number of extensions: 2206969
Number of successful extensions: 16264
Number of sequences better than 0.5: 92
Number of HSP's better than 0.5 without gapping: 86
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 15450
Number of HSP's gapped (non-prelim): 796
length of query: 1277
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1256
effective length of database: 2,791,206,460
effective search space: 3505755313760
effective search space used: 3505755313760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)