BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3185308.2.2
(697 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK071328.1| Oryza sativa (japonica cultivar-group) cDNA... 222 2e-055
gb|AY100692.1| Oryza sativa (japonica cultivar-group) alpha... 222 2e-055
gb|AQ863234.1|AQ863234 nbeb0020H17f CUGI Rice BAC Library (... 212 2e-052
emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC O... 212 2e-052
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 212 2e-052
gb|AACV01025197.1| Oryza sativa (japonica cultivar-group) c... 212 2e-052
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 212 2e-052
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
gb|AU172682.1|AU172682 AU172682 Rice panicle at flowering s... 210 7e-052
dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA... 131 6e-028
dbj|AP004587.3| Oryza sativa (japonica cultivar-group) geno... 131 6e-028
dbj|AP005544.3| Oryza sativa (japonica cultivar-group) geno... 131 6e-028
gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) c... 131 6e-028
ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA 131 6e-028
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 131 6e-028
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 131 6e-028
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 131 6e-028
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 131 6e-028
gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (j... 54 1e-004
gb|CB645780.1|CB645780 OSJNEb07L24.r OSJNEb Oryza sativa (j... 54 1e-004
dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA 54 1e-004
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 54 1e-004
ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-... 54 1e-004
dbj|AP004114.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AP005297.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AC133338.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 ... 46 0.025
gb|AACV01000668.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
gb|AACV01006741.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.025
ref|XM_470717.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.025
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 46 0.025
ref|XM_493787.1| Oryza sativa (japonica cultivar-group), Oz... 46 0.025
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 46 0.025
dbj|AP000837.1| Oryza sativa (japonica cultivar-group) geno... 46 0.025
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|DQ061062.1| Oryza sativa (japonica cultivar-group) alpha... 46 0.025
gb|DQ062981.1| Oryza sativa (japonica cultivar-group) alpha... 46 0.025
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.025
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.025
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CZ557622.1|CZ557622 M0035374 AS_TRIM_TDNA_B1 Oryza sativ... 44 0.100
dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.100
dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.100
gb|AC144737.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.100
gb|AACV01012416.1| Oryza sativa (japonica cultivar-group) c... 44 0.100
gb|AACV01022825.1| Oryza sativa (japonica cultivar-group) c... 44 0.100
ref|XM_475418.1| Oryza sativa (japonica cultivar-group), p... 44 0.100
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 44 0.100
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.100
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.100
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.100
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.100
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.100
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.100
gb|AC120308.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.100
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.100
gb|AACV01004780.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
dbj|AP005800.3| Oryza sativa (japonica cultivar-group) geno... 42 0.39
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 42 0.39
>dbj|AK071328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087C24, full
insert sequence
Length = 1175
Score = 222 bits (112), Expect = 2e-055
Identities = 280/337 (83%)
Strand = Plus / Minus
Query: 191 ctagaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtg 250
|||||||||||| |||||||||| || ||| || | |||||||||||| | |||| |
Sbjct: 890 ctagaagttcttcttggcctggtaggtgttgtcgtaggtccagtcgcggggggcgacgcg 831
Query: 251 ccaggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggt 310
||||||||| ||||||||||||||| |||||||||| ||||| || ||||||||||||||
Sbjct: 830 ccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccggt 771
Query: 311 gaggtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgac 370
||||| | ||||||| |||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 770 gaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttcac 711
Query: 371 gcgcttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcac 430
|||||| | ||||||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct: 710 ccgcttggtccccttcaccgtcagcttcaccacgtcccccgcgccgcccacgttcttcac 651
Query: 431 cttcacctcgctgtagtgctggttccctgtgatcgtgtaccggatgccgcctttccnnnc 490
| ||||| | |||| | ||||||| || ||||||||| || ||||| | || |
Sbjct: 650 catcaccatgttgtacgacgggttccccgttatcgtgtactttatcccgccctgcctcac 591
Query: 491 gcacgccaccttgcggtaggtgatgggcacgatgccg 527
|||||||||||| ||||||| || |||||||| ||||
Sbjct: 590 gcacgccacctttcggtaggagacgggcacgacgccg 554
>gb|AY100692.1| Oryza sativa (japonica cultivar-group) alpha expansin 26 (EXPA26)
mRNA, complete cds
Length = 1011
Score = 222 bits (112), Expect = 2e-055
Identities = 280/337 (83%)
Strand = Plus / Minus
Query: 191 ctagaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtg 250
|||||||||||| |||||||||| || ||| || | |||||||||||| | |||| |
Sbjct: 871 ctagaagttcttcttggcctggtaggtgttgtcgtaggtccagtcgcggggggcgacgcg 812
Query: 251 ccaggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggt 310
||||||||| ||||||||||||||| |||||||||| ||||| || ||||||||||||||
Sbjct: 811 ccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccggt 752
Query: 311 gaggtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgac 370
||||| | ||||||| |||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 751 gaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttcac 692
Query: 371 gcgcttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcac 430
|||||| | ||||||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct: 691 ccgcttggtccccttcaccgtcagcttcaccacgtcccccgcgccgcccacgttcttcac 632
Query: 431 cttcacctcgctgtagtgctggttccctgtgatcgtgtaccggatgccgcctttccnnnc 490
| ||||| | |||| | ||||||| || ||||||||| || ||||| | || |
Sbjct: 631 catcaccatgttgtacgacgggttccccgttatcgtgtactttatcccgccctgcctcac 572
Query: 491 gcacgccaccttgcggtaggtgatgggcacgatgccg 527
|||||||||||| ||||||| || |||||||| ||||
Sbjct: 571 gcacgccacctttcggtaggagacgggcacgacgccg 535
>gb|AQ863234.1|AQ863234 nbeb0020H17f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0020H17f, DNA sequence
Length = 477
Score = 212 bits (107), Expect = 2e-052
Identities = 212/247 (85%)
Strand = Plus / Plus
Query: 191 ctagaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtg 250
|||||||||||| |||||||||| || ||| || | |||||||||||| | |||| |
Sbjct: 194 ctagaagttcttcttggcctggtaggtgttgtcgtaagtccagtcgcggggggcgacgcg 253
Query: 251 ccaggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggt 310
||||||||| ||||||||||||||| |||||||||| ||||| || ||||||||||||||
Sbjct: 254 ccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccggt 313
Query: 311 gaggtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgac 370
||||| | ||||||| |||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 314 gaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttcac 373
Query: 371 gcgcttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcac 430
|||||| | ||||||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct: 374 ccgcttggtccccttcaccgtcagcttcaccacgtcccccgcgccgcccacgttcttcac 433
Query: 431 cttcacc 437
| |||||
Sbjct: 434 catcacc 440
>emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC OJ1123_B09 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 155585
Score = 212 bits (107), Expect = 2e-052
Identities = 212/247 (85%)
Strand = Plus / Plus
Query: 191 ctagaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtg 250
|||||||||||| |||||||||| || ||| || | |||||||||||| | |||| |
Sbjct: 127680 ctagaagttcttcttggcctggtaggtgttgtcgtaggtccagtcgcggggggcgacgcg 127739
Query: 251 ccaggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggt 310
||||||||| ||||||||||||||| |||||||||| ||||| || ||||||||||||||
Sbjct: 127740 ccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccggt 127799
Query: 311 gaggtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgac 370
||||| | ||||||| |||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 127800 gaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttcac 127859
Query: 371 gcgcttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcac 430
|||||| | ||||||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct: 127860 ccgcttggtccccttcaccgtcagcttcaccacgtcccccgcgccgcccacgttcttcac 127919
Query: 431 cttcacc 437
| |||||
Sbjct: 127920 catcacc 127926
>ref|NT_107150.1| Oryza sativa (japonica cultivar-group)
Length = 2060995
Score = 212 bits (107), Expect = 2e-052
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 191 ctagaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtg 250
|||||||||||| |||||||||| || ||| || | |||||||||||| | |||| |
Sbjct: 637485 ctagaagttcttcttggcctggtaggtgttgtcgtaggtccagtcgcggggggcgacgcg 637426
Query: 251 ccaggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggt 310
||||||||| ||||||||||||||| |||||||||| ||||| || ||||||||||||||
Sbjct: 637425 ccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccggt 637366
Query: 311 gaggtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgac 370
||||| | ||||||| |||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 637365 gaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttcac 637306
Query: 371 gcgcttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcac 430
|||||| | ||||||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct: 637305 ccgcttggtccccttcaccgtcagcttcaccacgtcccccgcgccgcccacgttcttcac 637246
Query: 431 cttcacc 437
| |||||
Sbjct: 637245 catcacc 637239
>gb|AACV01025197.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025197, whole
genome shotgun sequence
Length = 12082
Score = 212 bits (107), Expect = 2e-052
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 191 ctagaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtg 250
|||||||||||| |||||||||| || ||| || | |||||||||||| | |||| |
Sbjct: 1178 ctagaagttcttcttggcctggtaggtgttgtcgtaggtccagtcgcggggggcgacgcg 1119
Query: 251 ccaggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggt 310
||||||||| ||||||||||||||| |||||||||| ||||| || ||||||||||||||
Sbjct: 1118 ccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccggt 1059
Query: 311 gaggtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgac 370
||||| | ||||||| |||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 1058 gaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttcac 999
Query: 371 gcgcttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcac 430
|||||| | ||||||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct: 998 ccgcttggtccccttcaccgtcagcttcaccacgtcccccgcgccgcccacgttcttcac 939
Query: 431 cttcacc 437
| |||||
Sbjct: 938 catcacc 932
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118 genomic
scaffold, whole genome shotgun sequence
Length = 3660441
Score = 212 bits (107), Expect = 2e-052
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 191 ctagaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtg 250
|||||||||||| |||||||||| || ||| || | |||||||||||| | |||| |
Sbjct: 2800641 ctagaagttcttcttggcctggtaggtgttgtcgtaggtccagtcgcggggggcgacgcg 2800582
Query: 251 ccaggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggt 310
||||||||| ||||||||||||||| |||||||||| ||||| || ||||||||||||||
Sbjct: 2800581 ccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccggt 2800522
Query: 311 gaggtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgac 370
||||| | ||||||| |||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 2800521 gaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttcac 2800462
Query: 371 gcgcttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcac 430
|||||| | ||||||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct: 2800461 ccgcttggtccccttcaccgtcagcttcaccacgtcccccgcgccgcccacgttcttcac 2800402
Query: 431 cttcacc 437
| |||||
Sbjct: 2800401 catcacc 2800395
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 212 bits (107), Expect = 2e-052
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 191 ctagaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtg 250
|||||||||||| |||||||||| || ||| || | |||||||||||| | |||| |
Sbjct: 18323746 ctagaagttcttcttggcctggtaggtgttgtcgtaggtccagtcgcggggggcgacgcg 18323687
Query: 251 ccaggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggt 310
||||||||| ||||||||||||||| |||||||||| ||||| || ||||||||||||||
Sbjct: 18323686 ccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccggt 18323627
Query: 311 gaggtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgac 370
||||| | ||||||| |||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 18323626 gaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttcac 18323567
Query: 371 gcgcttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcac 430
|||||| | ||||||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct: 18323566 ccgcttggtccccttcaccgtcagcttcaccacgtcccccgcgccgcccacgttcttcac 18323507
Query: 431 cttcacc 437
| |||||
Sbjct: 18323506 catcacc 18323500
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 212 bits (107), Expect = 2e-052
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 191 ctagaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtg 250
|||||||||||| |||||||||| || ||| || | |||||||||||| | |||| |
Sbjct: 22125330 ctagaagttcttcttggcctggtaggtgttgtcgtaggtccagtcgcggggggcgacgcg 22125271
Query: 251 ccaggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggt 310
||||||||| ||||||||||||||| |||||||||| ||||| || ||||||||||||||
Sbjct: 22125270 ccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccggt 22125211
Query: 311 gaggtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgac 370
||||| | ||||||| |||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 22125210 gaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttcac 22125151
Query: 371 gcgcttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcac 430
|||||| | ||||||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct: 22125150 ccgcttggtccccttcaccgtcagcttcaccacgtcccccgcgccgcccacgttcttcac 22125091
Query: 431 cttcacc 437
| |||||
Sbjct: 22125090 catcacc 22125084
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 212 bits (107), Expect = 2e-052
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 191 ctagaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtg 250
|||||||||||| |||||||||| || ||| || | |||||||||||| | |||| |
Sbjct: 22053675 ctagaagttcttcttggcctggtaggtgttgtcgtaggtccagtcgcggggggcgacgcg 22053616
Query: 251 ccaggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggt 310
||||||||| ||||||||||||||| |||||||||| ||||| || ||||||||||||||
Sbjct: 22053615 ccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccggt 22053556
Query: 311 gaggtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgac 370
||||| | ||||||| |||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 22053555 gaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttcac 22053496
Query: 371 gcgcttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcac 430
|||||| | ||||||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct: 22053495 ccgcttggtccccttcaccgtcagcttcaccacgtcccccgcgccgcccacgttcttcac 22053436
Query: 431 cttcacc 437
| |||||
Sbjct: 22053435 catcacc 22053429
>gb|AU172682.1|AU172682 AU172682 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4381, mRNA sequence
Length = 441
Score = 210 bits (106), Expect = 7e-052
Identities = 202/234 (86%)
Strand = Plus / Minus
Query: 191 ctagaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtg 250
|||||||||||| |||||||||| || ||| || | |||||||||||| | |||| |
Sbjct: 300 ctagaagttcttcttggcctggtaggtgttgtcgtaggtccagtcgcggggggcgacgcg 241
Query: 251 ccaggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggt 310
||||||||| ||||||||||||||| |||||||||| ||||| || ||||||||||||||
Sbjct: 240 ccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccggt 181
Query: 311 gaggtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgac 370
||||| | ||||||| |||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 180 gaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttcac 121
Query: 371 gcgcttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgtt 424
|||||| | ||||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 120 ccgcttggtccccttcaccgtcagcttcaccacgtcccccgcgccgcccacgtt 67
>dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052B04, full
insert sequence
Length = 1088
Score = 131 bits (66), Expect = 6e-028
Identities = 225/278 (80%)
Strand = Plus / Minus
Query: 194 gaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtgcca 253
|||||||||||| |||||||| || |||||||||||||||| |||| |||||||||
Sbjct: 883 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 824
Query: 254 ggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggtgag 313
|||||| ||||||||||||||| ||||||| || | ||||||||||||||| ||||||||
Sbjct: 823 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 764
Query: 314 gtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgacgcg 373
| | || ||| ||| ||| |||||| ||||||||| ||| |||||||| || |
Sbjct: 763 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 704
Query: 374 cttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcacctt 433
|||||| ||||||||| | ||| | ||||||| || || ||||||||||| | |||| |
Sbjct: 703 cttgttccccttcaccgatagccctgccacgtcacccgccccgcccacgttcgacaccat 644
Query: 434 cacctcgctgtagtgctggttccctgtgatcgtgtacc 471
|||| | || ||| | ||||||| || ||||||||||
Sbjct: 643 caccaggttgaagtacgggttcccggttatcgtgtacc 606
Score = 44.1 bits (22), Expect = 0.100
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 513 atgggcacgatgccggccttnncctnngcgatct 546
|||||||||||||||||||| ||| |||||||
Sbjct: 564 atgggcacgatgccggccttctcctgcgcgatct 531
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0543D10
Length = 134866
Score = 131 bits (66), Expect = 6e-028
Identities = 225/278 (80%)
Strand = Plus / Minus
Query: 194 gaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtgcca 253
|||||||||||| |||||||| || |||||||||||||||| |||| |||||||||
Sbjct: 14736 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 14677
Query: 254 ggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggtgag 313
|||||| ||||||||||||||| ||||||| || | ||||||||||||||| ||||||||
Sbjct: 14676 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 14617
Query: 314 gtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgacgcg 373
| | || ||| ||| ||| |||||| ||||||||| ||| |||||||| || |
Sbjct: 14616 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 14557
Query: 374 cttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcacctt 433
|||||| ||||||||| | ||| | ||||||| || || ||||||||||| | |||| |
Sbjct: 14556 cttgttccccttcaccgatagccctgccacgtcacccgccccgcccacgttcgacaccat 14497
Query: 434 cacctcgctgtagtgctggttccctgtgatcgtgtacc 471
|||| | || ||| | ||||||| || ||||||||||
Sbjct: 14496 caccaggttgaagtacgggttcccggttatcgtgtacc 14459
Score = 44.1 bits (22), Expect = 0.100
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 513 atgggcacgatgccggccttnncctnngcgatct 546
|||||||||||||||||||| ||| |||||||
Sbjct: 14342 atgggcacgatgccggccttctcctgcgcgatct 14309
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0604E01
Length = 159049
Score = 131 bits (66), Expect = 6e-028
Identities = 225/278 (80%)
Strand = Plus / Minus
Query: 194 gaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtgcca 253
|||||||||||| |||||||| || |||||||||||||||| |||| |||||||||
Sbjct: 128758 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 128699
Query: 254 ggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggtgag 313
|||||| ||||||||||||||| ||||||| || | ||||||||||||||| ||||||||
Sbjct: 128698 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 128639
Query: 314 gtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgacgcg 373
| | || ||| ||| ||| |||||| ||||||||| ||| |||||||| || |
Sbjct: 128638 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 128579
Query: 374 cttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcacctt 433
|||||| ||||||||| | ||| | ||||||| || || ||||||||||| | |||| |
Sbjct: 128578 cttgttccccttcaccgatagccctgccacgtcacccgccccgcccacgttcgacaccat 128519
Query: 434 cacctcgctgtagtgctggttccctgtgatcgtgtacc 471
|||| | || ||| | ||||||| || ||||||||||
Sbjct: 128518 caccaggttgaagtacgggttcccggttatcgtgtacc 128481
Score = 44.1 bits (22), Expect = 0.100
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 513 atgggcacgatgccggccttnncctnngcgatct 546
|||||||||||||||||||| ||| |||||||
Sbjct: 128364 atgggcacgatgccggccttctcctgcgcgatct 128331
>gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018997, whole
genome shotgun sequence
Length = 21087
Score = 131 bits (66), Expect = 6e-028
Identities = 225/278 (80%)
Strand = Plus / Plus
Query: 194 gaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtgcca 253
|||||||||||| |||||||| || |||||||||||||||| |||| |||||||||
Sbjct: 12076 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 12135
Query: 254 ggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggtgag 313
|||||| ||||||||||||||| ||||||| || | ||||||||||||||| ||||||||
Sbjct: 12136 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 12195
Query: 314 gtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgacgcg 373
| | || ||| ||| ||| |||||| ||||||||| ||| |||||||| || |
Sbjct: 12196 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 12255
Query: 374 cttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcacctt 433
|||||| ||||||||| | ||| | ||||||| || || ||||||||||| | |||| |
Sbjct: 12256 cttgttccccttcaccgatagccctgccacgtcacccgccccgcccacgttcgacaccat 12315
Query: 434 cacctcgctgtagtgctggttccctgtgatcgtgtacc 471
|||| | || ||| | ||||||| || ||||||||||
Sbjct: 12316 caccaggttgaagtacgggttcccggttatcgtgtacc 12353
Score = 44.1 bits (22), Expect = 0.100
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 513 atgggcacgatgccggccttnncctnngcgatct 546
|||||||||||||||||||| ||| |||||||
Sbjct: 12470 atgggcacgatgccggccttctcctgcgcgatct 12503
>ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1088
Score = 131 bits (66), Expect = 6e-028
Identities = 225/278 (80%)
Strand = Plus / Minus
Query: 194 gaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtgcca 253
|||||||||||| |||||||| || |||||||||||||||| |||| |||||||||
Sbjct: 883 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 824
Query: 254 ggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggtgag 313
|||||| ||||||||||||||| ||||||| || | ||||||||||||||| ||||||||
Sbjct: 823 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 764
Query: 314 gtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgacgcg 373
| | || ||| ||| ||| |||||| ||||||||| ||| |||||||| || |
Sbjct: 763 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 704
Query: 374 cttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcacctt 433
|||||| ||||||||| | ||| | ||||||| || || ||||||||||| | |||| |
Sbjct: 703 cttgttccccttcaccgatagccctgccacgtcacccgccccgcccacgttcgacaccat 644
Query: 434 cacctcgctgtagtgctggttccctgtgatcgtgtacc 471
|||| | || ||| | ||||||| || ||||||||||
Sbjct: 643 caccaggttgaagtacgggttcccggttatcgtgtacc 606
Score = 44.1 bits (22), Expect = 0.100
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 513 atgggcacgatgccggccttnncctnngcgatct 546
|||||||||||||||||||| ||| |||||||
Sbjct: 564 atgggcacgatgccggccttctcctgcgcgatct 531
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 131 bits (66), Expect = 6e-028
Identities = 225/278 (80%)
Strand = Plus / Minus
Query: 194 gaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtgcca 253
|||||||||||| |||||||| || |||||||||||||||| |||| |||||||||
Sbjct: 27893176 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 27893117
Query: 254 ggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggtgag 313
|||||| ||||||||||||||| ||||||| || | ||||||||||||||| ||||||||
Sbjct: 27893116 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 27893057
Query: 314 gtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgacgcg 373
| | || ||| ||| ||| |||||| ||||||||| ||| |||||||| || |
Sbjct: 27893056 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 27892997
Query: 374 cttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcacctt 433
|||||| ||||||||| | ||| | ||||||| || || ||||||||||| | |||| |
Sbjct: 27892996 cttgttccccttcaccgatagccctgccacgtcacccgccccgcccacgttcgacaccat 27892937
Query: 434 cacctcgctgtagtgctggttccctgtgatcgtgtacc 471
|||| | || ||| | ||||||| || ||||||||||
Sbjct: 27892936 caccaggttgaagtacgggttcccggttatcgtgtacc 27892899
Score = 44.1 bits (22), Expect = 0.100
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 513 atgggcacgatgccggccttnncctnngcgatct 546
|||||||||||||||||||| ||| |||||||
Sbjct: 27892782 atgggcacgatgccggccttctcctgcgcgatct 27892749
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 131 bits (66), Expect = 6e-028
Identities = 225/278 (80%)
Strand = Plus / Minus
Query: 194 gaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtgcca 253
|||||||||||| |||||||| || |||||||||||||||| |||| |||||||||
Sbjct: 19206664 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 19206605
Query: 254 ggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggtgag 313
|||||| ||||||||||||||| ||||||| || | ||||||||||||||| ||||||||
Sbjct: 19206604 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 19206545
Query: 314 gtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgacgcg 373
| | || ||| ||| ||| |||||| ||||||||| ||| |||||||| || |
Sbjct: 19206544 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 19206485
Query: 374 cttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcacctt 433
|||||| ||||||||| | ||| | ||||||| || || ||||||||||| | |||| |
Sbjct: 19206484 cttgttccccttcaccgatagccctgccacgtcacccgccccgcccacgttcgacaccat 19206425
Query: 434 cacctcgctgtagtgctggttccctgtgatcgtgtacc 471
|||| | || ||| | ||||||| || ||||||||||
Sbjct: 19206424 caccaggttgaagtacgggttcccggttatcgtgtacc 19206387
Score = 44.1 bits (22), Expect = 0.100
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 513 atgggcacgatgccggccttnncctnngcgatct 546
|||||||||||||||||||| ||| |||||||
Sbjct: 19206270 atgggcacgatgccggccttctcctgcgcgatct 19206237
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 131 bits (66), Expect = 6e-028
Identities = 225/278 (80%)
Strand = Plus / Minus
Query: 194 gaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtgcca 253
|||||||||||| |||||||| || |||||||||||||||| |||| |||||||||
Sbjct: 26808670 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 26808611
Query: 254 ggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggtgag 313
|||||| ||||||||||||||| ||||||| || | ||||||||||||||| ||||||||
Sbjct: 26808610 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 26808551
Query: 314 gtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgacgcg 373
| | || ||| ||| ||| |||||| ||||||||| ||| |||||||| || |
Sbjct: 26808550 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 26808491
Query: 374 cttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcacctt 433
|||||| ||||||||| | ||| | ||||||| || || ||||||||||| | |||| |
Sbjct: 26808490 cttgttccccttcaccgatagccctgccacgtcacccgccccgcccacgttcgacaccat 26808431
Query: 434 cacctcgctgtagtgctggttccctgtgatcgtgtacc 471
|||| | || ||| | ||||||| || ||||||||||
Sbjct: 26808430 caccaggttgaagtacgggttcccggttatcgtgtacc 26808393
Score = 44.1 bits (22), Expect = 0.100
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 513 atgggcacgatgccggccttnncctnngcgatct 546
|||||||||||||||||||| ||| |||||||
Sbjct: 26808276 atgggcacgatgccggccttctcctgcgcgatct 26808243
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 131 bits (66), Expect = 6e-028
Identities = 225/278 (80%)
Strand = Plus / Minus
Query: 194 gaagttcttggtggcctggtacgttttgccgaactgccagtcgcggggcgtgacgtgcca 253
|||||||||||| |||||||| || |||||||||||||||| |||| |||||||||
Sbjct: 28131263 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 28131204
Query: 254 ggaggtagccttgcggtggtcggcggtcatgacgcggaacgtcagcgactcgccggtgag 313
|||||| ||||||||||||||| ||||||| || | ||||||||||||||| ||||||||
Sbjct: 28131203 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 28131144
Query: 314 gtcgacctccgtggtccagagctggccccagctgcgcttcatcggcgtccacttgacgcg 373
| | || ||| ||| ||| |||||| ||||||||| ||| |||||||| || |
Sbjct: 28131143 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 28131084
Query: 374 cttgttgcccttcacccacagcgccaccacgtccccggcgccgcccacgttggtcacctt 433
|||||| ||||||||| | ||| | ||||||| || || ||||||||||| | |||| |
Sbjct: 28131083 cttgttccccttcaccgatagccctgccacgtcacccgccccgcccacgttcgacaccat 28131024
Query: 434 cacctcgctgtagtgctggttccctgtgatcgtgtacc 471
|||| | || ||| | ||||||| || ||||||||||
Sbjct: 28131023 caccaggttgaagtacgggttcccggttatcgtgtacc 28130986
Score = 44.1 bits (22), Expect = 0.100
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 513 atgggcacgatgccggccttnncctnngcgatct 546
|||||||||||||||||||| ||| |||||||
Sbjct: 28130869 atgggcacgatgccggccttctcctgcgcgatct 28130836
>gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07L24 5', mRNA sequence
Length = 838
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| ||||||||||||||||||||||||
Sbjct: 714 cacgtcgccggcgccgcccacgttggtcacc 684
>gb|CB645780.1|CB645780 OSJNEb07L24.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07L24 3', mRNA sequence
Length = 735
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| ||||||||||||||||||||||||
Sbjct: 641 cacgtcgccggcgccgcccacgttggtcacc 671
>dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044E11, full
insert sequence
Length = 1416
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| ||||||||||||||||||||||||
Sbjct: 745 cacgtcgccggcgccgcccacgttggtcacc 715
>dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-F08, full
insert sequence
Length = 1290
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| ||||||||||||||||||||||||
Sbjct: 740 cacgtcgccggcgccgcccacgttggtcacc 710
>gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005399, whole
genome shotgun sequence
Length = 41834
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| ||||||||||||||||||||||||
Sbjct: 21392 cacgtcgccggcgccgcccacgttggtcacc 21362
>ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1289
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| ||||||||||||||||||||||||
Sbjct: 740 cacgtcgccggcgccgcccacgttggtcacc 710
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| ||||||||||||||||||||||||
Sbjct: 6404993 cacgtcgccggcgccgcccacgttggtcacc 6404963
>ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1734_E02.30
mRNA
Length = 1417
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| ||||||||||||||||||||||||
Sbjct: 746 cacgtcgccggcgccgcccacgttggtcacc 716
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1118_G04
Length = 134464
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| ||||||||||||||||||||||||
Sbjct: 9862 cacgtcgccggcgccgcccacgttggtcacc 9832
>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1734_E02
Length = 168566
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| ||||||||||||||||||||||||
Sbjct: 119837 cacgtcgccggcgccgcccacgttggtcacc 119807
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| ||||||||||||||||||||||||
Sbjct: 17796157 cacgtcgccggcgccgcccacgttggtcacc 17796127
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 130 ctgcatgcatatatatacata 150
|||||||||||||||||||||
Sbjct: 8839586 ctgcatgcatatatatacata 8839566
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| ||||||||||||||||||||||||
Sbjct: 31249221 cacgtcgccggcgccgcccacgttggtcacc 31249191
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 130 ctgcatgcatatatatacata 150
|||||||||||||||||||||
Sbjct: 22292650 ctgcatgcatatatatacata 22292630
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| ||||||||||||||||||||||||
Sbjct: 31239994 cacgtcgccggcgccgcccacgttggtcacc 31239964
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 130 ctgcatgcatatatatacata 150
|||||||||||||||||||||
Sbjct: 22498123 ctgcatgcatatatatacata 22498103
>gb|AC133338.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0031P06, 29 unordered pieces
Length = 132484
Score = 46.1 bits (23), Expect = 0.025
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| |||||||||||||||||| |||||
Sbjct: 93408 cacgtcgccggcgccgcccacgttgctcacc 93378
>gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genomic sequence, complete
sequence
Length = 130306
Score = 46.1 bits (23), Expect = 0.025
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| |||||||||||||||||| |||||
Sbjct: 72925 cacgtcgccggcgccgcccacgttgctcacc 72895
>gb|AACV01000668.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000668, whole
genome shotgun sequence
Length = 31747
Score = 46.1 bits (23), Expect = 0.025
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 381 cccttcacccacagcgccaccacgtccccggcgccgcccacgttggt 427
||||||||| ||| |||| |||||| ||||||||||| ||||||||
Sbjct: 5481 cccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggt 5527
>gb|AACV01006741.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006741, whole
genome shotgun sequence
Length = 75284
Score = 46.1 bits (23), Expect = 0.025
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| |||||||||||||||||| |||||
Sbjct: 1841 cacgtcgccggcgccgcccacgttgctcacc 1811
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 46.1 bits (23), Expect = 0.025
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 381 cccttcacccacagcgccaccacgtccccggcgccgcccacgttggt 427
||||||||| ||| |||| |||||| ||||||||||| ||||||||
Sbjct: 9523498 cccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggt 9523452
>ref|XM_470717.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 795
Score = 46.1 bits (23), Expect = 0.025
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| |||||||||||||||||| |||||
Sbjct: 579 cacgtcgccggcgccgcccacgttgctcacc 549
>ref|NT_079854.2| Oryza sativa (japonica cultivar-group)
Length = 2592259
Score = 46.1 bits (23), Expect = 0.025
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| |||||||||||||||||| |||||
Sbjct: 1124645 cacgtcgccggcgccgcccacgttgctcacc 1124615
>ref|XM_493787.1| Oryza sativa (japonica cultivar-group), Ozsa8506 predicted mRNA
Length = 747
Score = 46.1 bits (23), Expect = 0.025
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 381 cccttcacccacagcgccaccacgtccccggcgccgcccacgttggt 427
||||||||| ||| |||| |||||| ||||||||||| ||||||||
Sbjct: 563 cccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggt 517
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 46.1 bits (23), Expect = 0.025
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 381 cccttcacccacagcgccaccacgtccccggcgccgcccacgttggt 427
||||||||| ||| |||| |||||| ||||||||||| ||||||||
Sbjct: 9523338 cccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggt 9523292
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0424A08
Length = 151294
Score = 46.1 bits (23), Expect = 0.025
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 381 cccttcacccacagcgccaccacgtccccggcgccgcccacgttggt 427
||||||||| ||| |||| |||||| ||||||||||| ||||||||
Sbjct: 59145 cccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggt 59099
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 46.1 bits (23), Expect = 0.025
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| |||||||||||||||||| |||||
Sbjct: 1350229 cacgtcgccggcgccgcccacgttgctcacc 1350199
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 46.1 bits (23), Expect = 0.025
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 381 cccttcacccacagcgccaccacgtccccggcgccgcccacgttggt 427
||||||||| ||| |||| |||||| ||||||||||| ||||||||
Sbjct: 9573212 cccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggt 9573166
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 46.1 bits (23), Expect = 0.025
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| |||||||||||||||||| |||||
Sbjct: 15400936 cacgtcgccggcgccgcccacgttgctcacc 15400906
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 46.1 bits (23), Expect = 0.025
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 381 cccttcacccacagcgccaccacgtccccggcgccgcccacgttggt 427
||||||||| ||| |||| |||||| ||||||||||| ||||||||
Sbjct: 9573212 cccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggt 9573166
>gb|DQ061062.1| Oryza sativa (japonica cultivar-group) alpha-expansin 21 (EXPA21)
mRNA, partial cds
Length = 727
Score = 46.1 bits (23), Expect = 0.025
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 401 cacgtccccggcgccgcccacgttggtcacc 431
|||||| |||||||||||||||||| |||||
Sbjct: 556 cacgtcgccggcgccgcccacgttgctcacc 526
>gb|DQ062981.1| Oryza sativa (japonica cultivar-group) alpha-expansin 11 (EXPA11)
mRNA, partial cds
Length = 798
Score = 46.1 bits (23), Expect = 0.025
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 381 cccttcacccacagcgccaccacgtccccggcgccgcccacgttggt 427
||||||||| ||| |||| |||||| ||||||||||| ||||||||
Sbjct: 554 cccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggt 508
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 46.1 bits (23), Expect = 0.025
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 381 cccttcacccacagcgccaccacgtccccggcgccgcccacgttggt 427
||||||||| ||| |||| |||||| ||||||||||| ||||||||
Sbjct: 9525716 cccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggt 9525670
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 866,648
Number of Sequences: 438736
Number of extensions: 866648
Number of successful extensions: 25538
Number of sequences better than 0.5: 71
Number of HSP's better than 0.5 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23818
Number of HSP's gapped (non-prelim): 1709
length of query: 697
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 676
effective length of database: 2,791,206,460
effective search space: 1886855566960
effective search space used: 1886855566960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)