BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3185308.2.1
(1019 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK071328.1| Oryza sativa (japonica cultivar-group) cDNA... 339 2e-090
gb|AY100692.1| Oryza sativa (japonica cultivar-group) alpha... 339 2e-090
gb|AQ863234.1|AQ863234 nbeb0020H17f CUGI Rice BAC Library (... 212 3e-052
emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC O... 212 3e-052
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 212 3e-052
gb|AACV01025197.1| Oryza sativa (japonica cultivar-group) c... 212 3e-052
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 212 3e-052
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 212 3e-052
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 212 3e-052
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 212 3e-052
gb|AU172682.1|AU172682 AU172682 Rice panicle at flowering s... 210 1e-051
dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA... 131 8e-028
dbj|AP004587.3| Oryza sativa (japonica cultivar-group) geno... 131 8e-028
dbj|AP005544.3| Oryza sativa (japonica cultivar-group) geno... 131 8e-028
gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) c... 131 8e-028
gb|AACV01025196.1| Oryza sativa (japonica cultivar-group) c... 131 8e-028
ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA 131 8e-028
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 131 8e-028
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 131 8e-028
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 131 8e-028
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 131 8e-028
gb|AU172681.1|AU172681 AU172681 Rice panicle at flowering s... 70 3e-009
gb|AU182573.1|AU182573 AU182573 Rice panicle at flowering s... 70 3e-009
gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (j... 54 2e-004
gb|CB645780.1|CB645780 OSJNEb07L24.r OSJNEb Oryza sativa (j... 54 2e-004
dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-004
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 54 2e-004
ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-... 54 2e-004
dbj|AP004114.3| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
dbj|AP005297.3| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
dbj|AP003262.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01002974.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 50 0.002
ref|XM_463676.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 50 0.002
dbj|AP004332.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AU173825.1|AU173825 AU173825 Rice root Oryza sativa (jap... 48 0.009
gb|CB670393.1|CB670393 OSJNEe03H01.f OSJNEe Oryza sativa (j... 48 0.009
dbj|AK061062.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
dbj|AK069996.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
dbj|AK109983.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
dbj|AK111456.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
dbj|AP004464.3| Oryza sativa (japonica cultivar-group) geno... 48 0.009
emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC O... 48 0.009
dbj|AP005093.3| Oryza sativa (japonica cultivar-group) geno... 48 0.009
dbj|AP003817.3| Oryza sativa (japonica cultivar-group) geno... 48 0.009
ref|NT_107124.1| Oryza sativa (japonica cultivar-group) 48 0.009
gb|AACV01018931.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
gb|AACV01019972.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
gb|AACV01022216.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
ref|XM_479509.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.009
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 48 0.009
dbj|AP004592.3| Oryza sativa (japonica cultivar-group) geno... 48 0.009
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.009
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|AC146523.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|C19347.1|C19347 C19347 Rice panicle at ripening stage Or... 46 0.037
gb|AU067971.1|AU067971 AU067971 Rice callus Oryza sativa (j... 46 0.037
gb|C23613.2|C23613 C23613 Rice green shoot Oryza sativa (ja... 46 0.037
gb|CB672804.1|CB672804 OSJNEe07A19.f OSJNEe Oryza sativa (j... 46 0.037
gb|AC133338.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.037
dbj|AK061418.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.037
dbj|AK103614.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.037
dbj|AK104440.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.037
gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 ... 46 0.037
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 46 0.037
dbj|AP004279.1| Oryza sativa (japonica cultivar-group) geno... 46 0.037
gb|AACV01000443.1| Oryza sativa (japonica cultivar-group) c... 46 0.037
gb|AACV01000668.1| Oryza sativa (japonica cultivar-group) c... 46 0.037
gb|AACV01006741.1| Oryza sativa (japonica cultivar-group) c... 46 0.037
gb|AACV01014521.1| Oryza sativa (japonica cultivar-group) c... 46 0.037
gb|AACV01017013.1| Oryza sativa (japonica cultivar-group) c... 46 0.037
ref|XM_470717.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.037
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 46 0.037
ref|NM_188436.1| Oryza sativa (japonica cultivar-group), p... 46 0.037
ref|XM_493787.1| Oryza sativa (japonica cultivar-group), Oz... 46 0.037
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 46 0.037
dbj|AP001633.2| Oryza sativa (japonica cultivar-group) geno... 46 0.037
dbj|AP003104.2| Oryza sativa (japonica cultivar-group) geno... 46 0.037
dbj|AP000837.1| Oryza sativa (japonica cultivar-group) geno... 46 0.037
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.037
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.037
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.037
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.037
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.037
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.037
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.037
gb|DQ061062.1| Oryza sativa (japonica cultivar-group) alpha... 46 0.037
gb|DQ062981.1| Oryza sativa (japonica cultivar-group) alpha... 46 0.037
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.037
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 46 0.037
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.037
gb|D39929.1|D39929 RICS1605A Rice shoot Oryza sativa (japon... 44 0.15
gb|D40238.1|D40238 RICS2069A Rice shoot Oryza sativa (japon... 44 0.15
gb|D40737.1|D40737 RICS2875A Rice shoot Oryza sativa (japon... 44 0.15
gb|D40785.1|D40785 RICS2935A Rice shoot Oryza sativa (japon... 44 0.15
gb|D40798.1|D40798 RICS2950A Rice shoot Oryza sativa (japon... 44 0.15
gb|D41144.1|D41144 RICS3443A Rice shoot Oryza sativa (japon... 44 0.15
gb|AU082484.1|AU082484 AU082484 Rice panicle at flowering s... 44 0.15
gb|AU166331.1|AU166331 AU166331 Rice callus (2001) Oryza sa... 44 0.15
gb|CA755892.1|CA755892 BR030030000_PLATE_G05_39_038.ab1 OA ... 44 0.15
gb|CB661816.1|CB661816 OSJNEd05C17.f OSJNEd Oryza sativa (j... 44 0.15
gb|CB661817.1|CB661817 OSJNEd05C17.r OSJNEd Oryza sativa (j... 44 0.15
gb|CB674139.1|CB674139 OSJNEe09A20.f OSJNEe Oryza sativa (j... 44 0.15
gb|CF323496.1|CF323496 HDN--04-A03.g1 OsHDAC1-overexpressin... 44 0.15
dbj|AK065311.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
dbj|AK121266.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC O... 44 0.15
dbj|AP005294.3| Oryza sativa (japonica cultivar-group) geno... 44 0.15
emb|AL662997.3|OSJN00205 Oryza sativa genomic DNA, chromoso... 44 0.15
gb|AC137588.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|AC144737.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC O... 44 0.15
ref|NT_107131.1| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_107157.1| Oryza sativa (japonica cultivar-group) 44 0.15
gb|AC148814.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
dbj|AP005905.3| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP003635.2| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP002069.2| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP003633.3| Oryza sativa (japonica cultivar-group) geno... 44 0.15
gb|AC150698.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|AACV01003309.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01009062.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01009630.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01010877.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01012416.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01014761.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01019251.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|AACV01023374.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
ref|XM_450287.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.15
ref|XM_464087.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.15
ref|XM_471448.1| Oryza sativa (japonica cultivar-group), p... 44 0.15
ref|XM_472326.1| Oryza sativa (japonica cultivar-group), p... 44 0.15
ref|XM_475418.1| Oryza sativa (japonica cultivar-group), p... 44 0.15
ref|NT_079855.2| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_079859.2| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 44 0.15
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 44 0.15
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401233.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromoso... 44 0.15
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 44 0.15
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.15
>dbj|AK071328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087C24, full
insert sequence
Length = 1175
Score = 339 bits (171), Expect = 2e-090
Identities = 378/447 (84%)
Strand = Plus / Plus
Query: 366 accgtggtggtgacggccaccaacgaggccccgccgccggtgagcgggcagaagggcgag 425
||||| |||||||||||||||||| |||| |||||||| |||| |||| ||||||||||
Sbjct: 444 accgtcgtggtgacggccaccaaccaggcgccgccgccagtgaacgggatgaagggcgag 503
Query: 426 cactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggcatcgtg 485
||||| ||||||||||| |||||||||||| ||||||||||||||| |||| |||||
Sbjct: 504 cacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtcgtg 563
Query: 486 cccatcacctaccgcaaggtggcgtgcgagaggaaaggcggcatccggtacacgatcaca 545
||| || ||||||| ||||||||||||| |||| | ||||| || ||||||||| ||
Sbjct: 564 cccgtctcctaccgaaaggtggcgtgcgtgaggcagggcgggataaagtacacgataacg 623
Query: 546 gggaaccagcactacagcgaggtgaaggtgaccaacgtgggcggcgccggggacgtggtg 605
||||||| | |||| | ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 624 gggaacccgtcgtacaacatggtgatggtgaagaacgtgggcggcgcgggggacgtggtg 683
Query: 606 gcgctgtgggtgaagggcaacaagcgcgtcaagtggacgccgatgaagcgcagctggggc 665
|||| ||||||||| | |||||| || |||||||||||| || ||||||||||||||
Sbjct: 684 aagctgacggtgaaggggaccaagcgggtgaagtggacgccgctgcagcgcagctggggc 743
Query: 666 cagctctggaccacggaggtcgacctcaccggcgagtcgctgacgttccgcgtcatgacc 725
|||||||||| ||||||| | ||||||||||||||||||| || ||||| |||||||||
Sbjct: 744 cagctctggaagacggaggccaacctcaccggcgagtcgctcaccttccgggtcatgacc 803
Query: 726 gccgaccaccgcaaggctacctcctggcacgtcacgccccgcgactggcagttcggcaaa 785
| ||||||||||||||| |||||||||| |||| | |||||||||||| | || |||
Sbjct: 804 ggcgaccaccgcaaggccacctcctggcgcgtcgccccccgcgactggacctacgacaac 863
Query: 786 acgtaccaggccaccaagaacttctag 812
|| |||||||||| ||||||||||||
Sbjct: 864 acctaccaggccaagaagaacttctag 890
Score = 69.9 bits (35), Expect = 3e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 317 caacggcaccgggtgcggcgcgtgctacgagctcaaggg 355
||||||| |||||||||||||||||||||||||||||||
Sbjct: 392 caacggcgccgggtgcggcgcgtgctacgagctcaaggg 430
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 173 gccgtggacggacgggcacgcgacgtactacggcgggcgcgacg 216
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 257 gccgtgggtggacgggcacgcgacgttctacggcgggcgcgacg 300
>gb|AY100692.1| Oryza sativa (japonica cultivar-group) alpha expansin 26 (EXPA26)
mRNA, complete cds
Length = 1011
Score = 339 bits (171), Expect = 2e-090
Identities = 378/447 (84%)
Strand = Plus / Plus
Query: 366 accgtggtggtgacggccaccaacgaggccccgccgccggtgagcgggcagaagggcgag 425
||||| |||||||||||||||||| |||| |||||||| |||| |||| ||||||||||
Sbjct: 425 accgtcgtggtgacggccaccaaccaggcgccgccgccagtgaacgggatgaagggcgag 484
Query: 426 cactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggcatcgtg 485
||||| ||||||||||| |||||||||||| ||||||||||||||| |||| |||||
Sbjct: 485 cacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtcgtg 544
Query: 486 cccatcacctaccgcaaggtggcgtgcgagaggaaaggcggcatccggtacacgatcaca 545
||| || ||||||| ||||||||||||| |||| | ||||| || ||||||||| ||
Sbjct: 545 cccgtctcctaccgaaaggtggcgtgcgtgaggcagggcgggataaagtacacgataacg 604
Query: 546 gggaaccagcactacagcgaggtgaaggtgaccaacgtgggcggcgccggggacgtggtg 605
||||||| | |||| | ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 605 gggaacccgtcgtacaacatggtgatggtgaagaacgtgggcggcgcgggggacgtggtg 664
Query: 606 gcgctgtgggtgaagggcaacaagcgcgtcaagtggacgccgatgaagcgcagctggggc 665
|||| ||||||||| | |||||| || |||||||||||| || ||||||||||||||
Sbjct: 665 aagctgacggtgaaggggaccaagcgggtgaagtggacgccgctgcagcgcagctggggc 724
Query: 666 cagctctggaccacggaggtcgacctcaccggcgagtcgctgacgttccgcgtcatgacc 725
|||||||||| ||||||| | ||||||||||||||||||| || ||||| |||||||||
Sbjct: 725 cagctctggaagacggaggccaacctcaccggcgagtcgctcaccttccgggtcatgacc 784
Query: 726 gccgaccaccgcaaggctacctcctggcacgtcacgccccgcgactggcagttcggcaaa 785
| ||||||||||||||| |||||||||| |||| | |||||||||||| | || |||
Sbjct: 785 ggcgaccaccgcaaggccacctcctggcgcgtcgccccccgcgactggacctacgacaac 844
Query: 786 acgtaccaggccaccaagaacttctag 812
|| |||||||||| ||||||||||||
Sbjct: 845 acctaccaggccaagaagaacttctag 871
Score = 69.9 bits (35), Expect = 3e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 317 caacggcaccgggtgcggcgcgtgctacgagctcaaggg 355
||||||| |||||||||||||||||||||||||||||||
Sbjct: 373 caacggcgccgggtgcggcgcgtgctacgagctcaaggg 411
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 173 gccgtggacggacgggcacgcgacgtactacggcgggcgcgacg 216
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 238 gccgtgggtggacgggcacgcgacgttctacggcgggcgcgacg 281
>gb|AQ863234.1|AQ863234 nbeb0020H17f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0020H17f, DNA sequence
Length = 477
Score = 212 bits (107), Expect = 3e-052
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 566 ggtgaaggtgaccaacgtgggcggcgccggggacgtggtggcgctgtgggtgaagggcaa 625
||||| ||||| |||||||||||||| |||||||||||| |||| ||||||||| |
Sbjct: 440 ggtgatggtgaagaacgtgggcggcgcgggggacgtggtgaagctgacggtgaaggggac 381
Query: 626 caagcgcgtcaagtggacgccgatgaagcgcagctggggccagctctggaccacggaggt 685
|||||| || |||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 380 caagcgggtgaagtggacgccgctgcagcgcagctggggccagctctggaagacggaggc 321
Query: 686 cgacctcaccggcgagtcgctgacgttccgcgtcatgaccgccgaccaccgcaaggctac 745
| ||||||||||||||||||| || ||||| |||||||||| ||||||||||||||| ||
Sbjct: 320 caacctcaccggcgagtcgctcaccttccgggtcatgaccggcgaccaccgcaaggccac 261
Query: 746 ctcctggcacgtcacgccccgcgactggcagttcggcaaaacgtaccaggccaccaagaa 805
|||||||| |||| | |||||||||||| | || ||| || |||||||||| |||||
Sbjct: 260 ctcctggcgcgtcgccccccgcgactggacttacgacaacacctaccaggccaagaagaa 201
Query: 806 cttctag 812
|||||||
Sbjct: 200 cttctag 194
>emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC OJ1123_B09 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 155585
Score = 212 bits (107), Expect = 3e-052
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 566 ggtgaaggtgaccaacgtgggcggcgccggggacgtggtggcgctgtgggtgaagggcaa 625
||||| ||||| |||||||||||||| |||||||||||| |||| ||||||||| |
Sbjct: 127926 ggtgatggtgaagaacgtgggcggcgcgggggacgtggtgaagctgacggtgaaggggac 127867
Query: 626 caagcgcgtcaagtggacgccgatgaagcgcagctggggccagctctggaccacggaggt 685
|||||| || |||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 127866 caagcgggtgaagtggacgccgctgcagcgcagctggggccagctctggaagacggaggc 127807
Query: 686 cgacctcaccggcgagtcgctgacgttccgcgtcatgaccgccgaccaccgcaaggctac 745
| ||||||||||||||||||| || ||||| |||||||||| ||||||||||||||| ||
Sbjct: 127806 caacctcaccggcgagtcgctcaccttccgggtcatgaccggcgaccaccgcaaggccac 127747
Query: 746 ctcctggcacgtcacgccccgcgactggcagttcggcaaaacgtaccaggccaccaagaa 805
|||||||| |||| | |||||||||||| | || ||| || |||||||||| |||||
Sbjct: 127746 ctcctggcgcgtcgccccccgcgactggacctacgacaacacctaccaggccaagaagaa 127687
Query: 806 cttctag 812
|||||||
Sbjct: 127686 cttctag 127680
Score = 131 bits (66), Expect = 8e-028
Identities = 117/134 (87%)
Strand = Plus / Minus
Query: 366 accgtggtggtgacggccaccaacgaggccccgccgccggtgagcgggcagaagggcgag 425
||||| |||||||||||||||||| |||| |||||||| |||| |||| ||||||||||
Sbjct: 129386 accgtcgtggtgacggccaccaaccaggcgccgccgccagtgaacgggatgaagggcgag 129327
Query: 426 cactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggcatcgtg 485
||||| ||||||||||| |||||||||||| ||||||||||||||| |||| |||||
Sbjct: 129326 cacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtcgtg 129267
Query: 486 cccatcacctaccg 499
||| || |||||||
Sbjct: 129266 cccgtctcctaccg 129253
Score = 69.9 bits (35), Expect = 3e-009
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 317 caacggcaccgggtgcggcgcgtgctacgagctcaaggg 355
||||||| |||||||||||||||||||||||||||||||
Sbjct: 129438 caacggcgccgggtgcggcgcgtgctacgagctcaaggg 129400
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 173 gccgtggacggacgggcacgcgacgtactacggcgggcgcgacg 216
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 129573 gccgtgggtggacgggcacgcgacgttctacggcgggcgcgacg 129530
>ref|NT_107150.1| Oryza sativa (japonica cultivar-group)
Length = 2060995
Score = 212 bits (107), Expect = 3e-052
Identities = 212/247 (85%)
Strand = Plus / Plus
Query: 566 ggtgaaggtgaccaacgtgggcggcgccggggacgtggtggcgctgtgggtgaagggcaa 625
||||| ||||| |||||||||||||| |||||||||||| |||| ||||||||| |
Sbjct: 637239 ggtgatggtgaagaacgtgggcggcgcgggggacgtggtgaagctgacggtgaaggggac 637298
Query: 626 caagcgcgtcaagtggacgccgatgaagcgcagctggggccagctctggaccacggaggt 685
|||||| || |||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 637299 caagcgggtgaagtggacgccgctgcagcgcagctggggccagctctggaagacggaggc 637358
Query: 686 cgacctcaccggcgagtcgctgacgttccgcgtcatgaccgccgaccaccgcaaggctac 745
| ||||||||||||||||||| || ||||| |||||||||| ||||||||||||||| ||
Sbjct: 637359 caacctcaccggcgagtcgctcaccttccgggtcatgaccggcgaccaccgcaaggccac 637418
Query: 746 ctcctggcacgtcacgccccgcgactggcagttcggcaaaacgtaccaggccaccaagaa 805
|||||||| |||| | |||||||||||| | || ||| || |||||||||| |||||
Sbjct: 637419 ctcctggcgcgtcgccccccgcgactggacctacgacaacacctaccaggccaagaagaa 637478
Query: 806 cttctag 812
|||||||
Sbjct: 637479 cttctag 637485
Score = 131 bits (66), Expect = 8e-028
Identities = 117/134 (87%)
Strand = Plus / Plus
Query: 366 accgtggtggtgacggccaccaacgaggccccgccgccggtgagcgggcagaagggcgag 425
||||| |||||||||||||||||| |||| |||||||| |||| |||| ||||||||||
Sbjct: 635779 accgtcgtggtgacggccaccaaccaggcgccgccgccagtgaacgggatgaagggcgag 635838
Query: 426 cactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggcatcgtg 485
||||| ||||||||||| |||||||||||| ||||||||||||||| |||| |||||
Sbjct: 635839 cacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtcgtg 635898
Query: 486 cccatcacctaccg 499
||| || |||||||
Sbjct: 635899 cccgtctcctaccg 635912
Score = 69.9 bits (35), Expect = 3e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 317 caacggcaccgggtgcggcgcgtgctacgagctcaaggg 355
||||||| |||||||||||||||||||||||||||||||
Sbjct: 635727 caacggcgccgggtgcggcgcgtgctacgagctcaaggg 635765
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 173 gccgtggacggacgggcacgcgacgtactacggcgggcgcgacg 216
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 635592 gccgtgggtggacgggcacgcgacgttctacggcgggcgcgacg 635635
>gb|AACV01025197.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025197, whole
genome shotgun sequence
Length = 12082
Score = 212 bits (107), Expect = 3e-052
Identities = 212/247 (85%)
Strand = Plus / Plus
Query: 566 ggtgaaggtgaccaacgtgggcggcgccggggacgtggtggcgctgtgggtgaagggcaa 625
||||| ||||| |||||||||||||| |||||||||||| |||| ||||||||| |
Sbjct: 932 ggtgatggtgaagaacgtgggcggcgcgggggacgtggtgaagctgacggtgaaggggac 991
Query: 626 caagcgcgtcaagtggacgccgatgaagcgcagctggggccagctctggaccacggaggt 685
|||||| || |||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 992 caagcgggtgaagtggacgccgctgcagcgcagctggggccagctctggaagacggaggc 1051
Query: 686 cgacctcaccggcgagtcgctgacgttccgcgtcatgaccgccgaccaccgcaaggctac 745
| ||||||||||||||||||| || ||||| |||||||||| ||||||||||||||| ||
Sbjct: 1052 caacctcaccggcgagtcgctcaccttccgggtcatgaccggcgaccaccgcaaggccac 1111
Query: 746 ctcctggcacgtcacgccccgcgactggcagttcggcaaaacgtaccaggccaccaagaa 805
|||||||| |||| | |||||||||||| | || ||| || |||||||||| |||||
Sbjct: 1112 ctcctggcgcgtcgccccccgcgactggacctacgacaacacctaccaggccaagaagaa 1171
Query: 806 cttctag 812
|||||||
Sbjct: 1172 cttctag 1178
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118 genomic
scaffold, whole genome shotgun sequence
Length = 3660441
Score = 212 bits (107), Expect = 3e-052
Identities = 212/247 (85%)
Strand = Plus / Plus
Query: 566 ggtgaaggtgaccaacgtgggcggcgccggggacgtggtggcgctgtgggtgaagggcaa 625
||||| ||||| |||||||||||||| |||||||||||| |||| ||||||||| |
Sbjct: 2800395 ggtgatggtgaagaacgtgggcggcgcgggggacgtggtgaagctgacggtgaaggggac 2800454
Query: 626 caagcgcgtcaagtggacgccgatgaagcgcagctggggccagctctggaccacggaggt 685
|||||| || |||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 2800455 caagcgggtgaagtggacgccgctgcagcgcagctggggccagctctggaagacggaggc 2800514
Query: 686 cgacctcaccggcgagtcgctgacgttccgcgtcatgaccgccgaccaccgcaaggctac 745
| ||||||||||||||||||| || ||||| |||||||||| ||||||||||||||| ||
Sbjct: 2800515 caacctcaccggcgagtcgctcaccttccgggtcatgaccggcgaccaccgcaaggccac 2800574
Query: 746 ctcctggcacgtcacgccccgcgactggcagttcggcaaaacgtaccaggccaccaagaa 805
|||||||| |||| | |||||||||||| | || ||| || |||||||||| |||||
Sbjct: 2800575 ctcctggcgcgtcgccccccgcgactggacctacgacaacacctaccaggccaagaagaa 2800634
Query: 806 cttctag 812
|||||||
Sbjct: 2800635 cttctag 2800641
Score = 131 bits (66), Expect = 8e-028
Identities = 117/134 (87%)
Strand = Plus / Plus
Query: 366 accgtggtggtgacggccaccaacgaggccccgccgccggtgagcgggcagaagggcgag 425
||||| |||||||||||||||||| |||| |||||||| |||| |||| ||||||||||
Sbjct: 2798068 accgtcgtggtgacggccaccaaccaggcgccgccgccagtgaacgggatgaagggcgag 2798127
Query: 426 cactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggcatcgtg 485
||||| ||||||||||| |||||||||||| ||||||||||||||| |||| |||||
Sbjct: 2798128 cacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtcgtg 2798187
Query: 486 cccatcacctaccg 499
||| || |||||||
Sbjct: 2798188 cccgtctcctaccg 2798201
Score = 69.9 bits (35), Expect = 3e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 317 caacggcaccgggtgcggcgcgtgctacgagctcaaggg 355
||||||| |||||||||||||||||||||||||||||||
Sbjct: 2798016 caacggcgccgggtgcggcgcgtgctacgagctcaaggg 2798054
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 173 gccgtggacggacgggcacgcgacgtactacggcgggcgcgacg 216
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 2797881 gccgtgggtggacgggcacgcgacgttctacggcgggcgcgacg 2797924
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 212 bits (107), Expect = 3e-052
Identities = 212/247 (85%)
Strand = Plus / Plus
Query: 566 ggtgaaggtgaccaacgtgggcggcgccggggacgtggtggcgctgtgggtgaagggcaa 625
||||| ||||| |||||||||||||| |||||||||||| |||| ||||||||| |
Sbjct: 18323500 ggtgatggtgaagaacgtgggcggcgcgggggacgtggtgaagctgacggtgaaggggac 18323559
Query: 626 caagcgcgtcaagtggacgccgatgaagcgcagctggggccagctctggaccacggaggt 685
|||||| || |||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 18323560 caagcgggtgaagtggacgccgctgcagcgcagctggggccagctctggaagacggaggc 18323619
Query: 686 cgacctcaccggcgagtcgctgacgttccgcgtcatgaccgccgaccaccgcaaggctac 745
| ||||||||||||||||||| || ||||| |||||||||| ||||||||||||||| ||
Sbjct: 18323620 caacctcaccggcgagtcgctcaccttccgggtcatgaccggcgaccaccgcaaggccac 18323679
Query: 746 ctcctggcacgtcacgccccgcgactggcagttcggcaaaacgtaccaggccaccaagaa 805
|||||||| |||| | |||||||||||| | || ||| || |||||||||| |||||
Sbjct: 18323680 ctcctggcgcgtcgccccccgcgactggacctacgacaacacctaccaggccaagaagaa 18323739
Query: 806 cttctag 812
|||||||
Sbjct: 18323740 cttctag 18323746
Score = 131 bits (66), Expect = 8e-028
Identities = 117/134 (87%)
Strand = Plus / Plus
Query: 366 accgtggtggtgacggccaccaacgaggccccgccgccggtgagcgggcagaagggcgag 425
||||| |||||||||||||||||| |||| |||||||| |||| |||| ||||||||||
Sbjct: 18321173 accgtcgtggtgacggccaccaaccaggcgccgccgccagtgaacgggatgaagggcgag 18321232
Query: 426 cactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggcatcgtg 485
||||| ||||||||||| |||||||||||| ||||||||||||||| |||| |||||
Sbjct: 18321233 cacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtcgtg 18321292
Query: 486 cccatcacctaccg 499
||| || |||||||
Sbjct: 18321293 cccgtctcctaccg 18321306
Score = 69.9 bits (35), Expect = 3e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 317 caacggcaccgggtgcggcgcgtgctacgagctcaaggg 355
||||||| |||||||||||||||||||||||||||||||
Sbjct: 18321121 caacggcgccgggtgcggcgcgtgctacgagctcaaggg 18321159
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 173 gccgtggacggacgggcacgcgacgtactacggcgggcgcgacg 216
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 18320986 gccgtgggtggacgggcacgcgacgttctacggcgggcgcgacg 18321029
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 212 bits (107), Expect = 3e-052
Identities = 212/247 (85%)
Strand = Plus / Plus
Query: 566 ggtgaaggtgaccaacgtgggcggcgccggggacgtggtggcgctgtgggtgaagggcaa 625
||||| ||||| |||||||||||||| |||||||||||| |||| ||||||||| |
Sbjct: 22125084 ggtgatggtgaagaacgtgggcggcgcgggggacgtggtgaagctgacggtgaaggggac 22125143
Query: 626 caagcgcgtcaagtggacgccgatgaagcgcagctggggccagctctggaccacggaggt 685
|||||| || |||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 22125144 caagcgggtgaagtggacgccgctgcagcgcagctggggccagctctggaagacggaggc 22125203
Query: 686 cgacctcaccggcgagtcgctgacgttccgcgtcatgaccgccgaccaccgcaaggctac 745
| ||||||||||||||||||| || ||||| |||||||||| ||||||||||||||| ||
Sbjct: 22125204 caacctcaccggcgagtcgctcaccttccgggtcatgaccggcgaccaccgcaaggccac 22125263
Query: 746 ctcctggcacgtcacgccccgcgactggcagttcggcaaaacgtaccaggccaccaagaa 805
|||||||| |||| | |||||||||||| | || ||| || |||||||||| |||||
Sbjct: 22125264 ctcctggcgcgtcgccccccgcgactggacctacgacaacacctaccaggccaagaagaa 22125323
Query: 806 cttctag 812
|||||||
Sbjct: 22125324 cttctag 22125330
Score = 131 bits (66), Expect = 8e-028
Identities = 117/134 (87%)
Strand = Plus / Plus
Query: 366 accgtggtggtgacggccaccaacgaggccccgccgccggtgagcgggcagaagggcgag 425
||||| |||||||||||||||||| |||| |||||||| |||| |||| ||||||||||
Sbjct: 22123624 accgtcgtggtgacggccaccaaccaggcgccgccgccagtgaacgggatgaagggcgag 22123683
Query: 426 cactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggcatcgtg 485
||||| ||||||||||| |||||||||||| ||||||||||||||| |||| |||||
Sbjct: 22123684 cacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtcgtg 22123743
Query: 486 cccatcacctaccg 499
||| || |||||||
Sbjct: 22123744 cccgtctcctaccg 22123757
Score = 69.9 bits (35), Expect = 3e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 317 caacggcaccgggtgcggcgcgtgctacgagctcaaggg 355
||||||| |||||||||||||||||||||||||||||||
Sbjct: 22123572 caacggcgccgggtgcggcgcgtgctacgagctcaaggg 22123610
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 173 gccgtggacggacgggcacgcgacgtactacggcgggcgcgacg 216
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 22123437 gccgtgggtggacgggcacgcgacgttctacggcgggcgcgacg 22123480
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 gaggaggaggaggacggcggcg 129
||||||||||||||||||||||
Sbjct: 4058218 gaggaggaggaggacggcggcg 4058239
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 212 bits (107), Expect = 3e-052
Identities = 212/247 (85%)
Strand = Plus / Plus
Query: 566 ggtgaaggtgaccaacgtgggcggcgccggggacgtggtggcgctgtgggtgaagggcaa 625
||||| ||||| |||||||||||||| |||||||||||| |||| ||||||||| |
Sbjct: 22053429 ggtgatggtgaagaacgtgggcggcgcgggggacgtggtgaagctgacggtgaaggggac 22053488
Query: 626 caagcgcgtcaagtggacgccgatgaagcgcagctggggccagctctggaccacggaggt 685
|||||| || |||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 22053489 caagcgggtgaagtggacgccgctgcagcgcagctggggccagctctggaagacggaggc 22053548
Query: 686 cgacctcaccggcgagtcgctgacgttccgcgtcatgaccgccgaccaccgcaaggctac 745
| ||||||||||||||||||| || ||||| |||||||||| ||||||||||||||| ||
Sbjct: 22053549 caacctcaccggcgagtcgctcaccttccgggtcatgaccggcgaccaccgcaaggccac 22053608
Query: 746 ctcctggcacgtcacgccccgcgactggcagttcggcaaaacgtaccaggccaccaagaa 805
|||||||| |||| | |||||||||||| | || ||| || |||||||||| |||||
Sbjct: 22053609 ctcctggcgcgtcgccccccgcgactggacctacgacaacacctaccaggccaagaagaa 22053668
Query: 806 cttctag 812
|||||||
Sbjct: 22053669 cttctag 22053675
Score = 131 bits (66), Expect = 8e-028
Identities = 117/134 (87%)
Strand = Plus / Plus
Query: 366 accgtggtggtgacggccaccaacgaggccccgccgccggtgagcgggcagaagggcgag 425
||||| |||||||||||||||||| |||| |||||||| |||| |||| ||||||||||
Sbjct: 22051969 accgtcgtggtgacggccaccaaccaggcgccgccgccagtgaacgggatgaagggcgag 22052028
Query: 426 cactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggcatcgtg 485
||||| ||||||||||| |||||||||||| ||||||||||||||| |||| |||||
Sbjct: 22052029 cacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtcgtg 22052088
Query: 486 cccatcacctaccg 499
||| || |||||||
Sbjct: 22052089 cccgtctcctaccg 22052102
Score = 69.9 bits (35), Expect = 3e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 317 caacggcaccgggtgcggcgcgtgctacgagctcaaggg 355
||||||| |||||||||||||||||||||||||||||||
Sbjct: 22051917 caacggcgccgggtgcggcgcgtgctacgagctcaaggg 22051955
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 173 gccgtggacggacgggcacgcgacgtactacggcgggcgcgacg 216
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 22051782 gccgtgggtggacgggcacgcgacgttctacggcgggcgcgacg 22051825
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 gaggaggaggaggacggcggcg 129
||||||||||||||||||||||
Sbjct: 4058205 gaggaggaggaggacggcggcg 4058226
>gb|AU172682.1|AU172682 AU172682 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4381, mRNA sequence
Length = 441
Score = 210 bits (106), Expect = 1e-051
Identities = 202/234 (86%)
Strand = Plus / Plus
Query: 579 aacgtgggcggcgccggggacgtggtggcgctgtgggtgaagggcaacaagcgcgtcaag 638
|||||||||||||| |||||||||||| |||| ||||||||| | |||||| || |||
Sbjct: 67 aacgtgggcggcgcgggggacgtggtgaagctgacggtgaaggggaccaagcgggtgaag 126
Query: 639 tggacgccgatgaagcgcagctggggccagctctggaccacggaggtcgacctcaccggc 698
||||||||| || |||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct: 127 tggacgccgctgcagcgcagctggggccagctctggaagacggaggccaacctcaccggc 186
Query: 699 gagtcgctgacgttccgcgtcatgaccgccgaccaccgcaaggctacctcctggcacgtc 758
|||||||| || ||||| |||||||||| ||||||||||||||| |||||||||| ||||
Sbjct: 187 gagtcgctcaccttccgggtcatgaccggcgaccaccgcaaggccacctcctggcgcgtc 246
Query: 759 acgccccgcgactggcagttcggcaaaacgtaccaggccaccaagaacttctag 812
| |||||||||||| | || ||| || |||||||||| ||||||||||||
Sbjct: 247 gccccccgcgactggacctacgacaacacctaccaggccaagaagaacttctag 300
>dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052B04, full
insert sequence
Length = 1088
Score = 131 bits (66), Expect = 8e-028
Identities = 225/278 (80%)
Strand = Plus / Plus
Query: 532 ggtacacgatcacagggaaccagcactacagcgaggtgaaggtgaccaacgtgggcggcg 591
|||||||||| || ||||||| | ||| || | ||||| |||| | ||||||||||| |
Sbjct: 606 ggtacacgataaccgggaacccgtacttcaacctggtgatggtgtcgaacgtgggcgggg 665
Query: 592 ccggggacgtggtggcgctgtgggtgaagggcaacaagcgcgtcaagtggacgccgatga 651
| || ||||||| | ||| | ||||||||| |||||| | || |||||||| ||| |||
Sbjct: 666 cgggtgacgtggcagggctatcggtgaaggggaacaagagggtgaagtggactccgctga 725
Query: 652 agcgcagctggggccagctctggaccacggaggtcgacctcaccggcgagtcgctgacgt 711
|||||| |||||| ||| ||| ||| || | ||||||||| |||||||||||||
Sbjct: 726 agcgcaactgggggcaggagtggcagacgtcggaggtcctcaccggagagtcgctgacgt 785
Query: 712 tccgcgtcatgaccgccgaccaccgcaaggctacctcctggcacgtcacgccccgcgact 771
|| | || ||||||| ||||||||||||||| ||||||||||||||| |||| |||||
Sbjct: 786 tcagggtgatgaccggcgaccaccgcaaggccacctcctggcacgtcctcccccccgact 845
Query: 772 ggcagttcggcaaaacgtaccaggccaccaagaacttc 809
||||||||||| || |||||||| ||||||||||||
Sbjct: 846 ggcagttcggcgtcacctaccaggctaccaagaacttc 883
Score = 75.8 bits (38), Expect = 4e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 421 gcgagcactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggca 480
||||||||||||||||| |||| ||||| || || ||||||| |||||||||||||||
Sbjct: 495 gcgagcactttgacctctccatgccggcctttctgcagatcgcgcaggagaaggccggca 554
Query: 481 tcgtgcccat 490
||||||||||
Sbjct: 555 tcgtgcccat 564
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 150 aaccacggcaagtttaaggcggagccgtggacggacgggcacgcgacgtactacggcggg 209
|||||||||||||| | ||||| ||| |||| | | | ||||||||||| ||||||||||
Sbjct: 176 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 235
Query: 210 cgcgacgggt 219
||||||||||
Sbjct: 236 cgcgacgggt 245
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0543D10
Length = 134866
Score = 131 bits (66), Expect = 8e-028
Identities = 225/278 (80%)
Strand = Plus / Plus
Query: 532 ggtacacgatcacagggaaccagcactacagcgaggtgaaggtgaccaacgtgggcggcg 591
|||||||||| || ||||||| | ||| || | ||||| |||| | ||||||||||| |
Sbjct: 14459 ggtacacgataaccgggaacccgtacttcaacctggtgatggtgtcgaacgtgggcgggg 14518
Query: 592 ccggggacgtggtggcgctgtgggtgaagggcaacaagcgcgtcaagtggacgccgatga 651
| || ||||||| | ||| | ||||||||| |||||| | || |||||||| ||| |||
Sbjct: 14519 cgggtgacgtggcagggctatcggtgaaggggaacaagagggtgaagtggactccgctga 14578
Query: 652 agcgcagctggggccagctctggaccacggaggtcgacctcaccggcgagtcgctgacgt 711
|||||| |||||| ||| ||| ||| || | ||||||||| |||||||||||||
Sbjct: 14579 agcgcaactgggggcaggagtggcagacgtcggaggtcctcaccggagagtcgctgacgt 14638
Query: 712 tccgcgtcatgaccgccgaccaccgcaaggctacctcctggcacgtcacgccccgcgact 771
|| | || ||||||| ||||||||||||||| ||||||||||||||| |||| |||||
Sbjct: 14639 tcagggtgatgaccggcgaccaccgcaaggccacctcctggcacgtcctcccccccgact 14698
Query: 772 ggcagttcggcaaaacgtaccaggccaccaagaacttc 809
||||||||||| || |||||||| ||||||||||||
Sbjct: 14699 ggcagttcggcgtcacctaccaggctaccaagaacttc 14736
Score = 75.8 bits (38), Expect = 4e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 421 gcgagcactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggca 480
||||||||||||||||| |||| ||||| || || ||||||| |||||||||||||||
Sbjct: 14273 gcgagcactttgacctctccatgccggcctttctgcagatcgcgcaggagaaggccggca 14332
Query: 481 tcgtgcccat 490
||||||||||
Sbjct: 14333 tcgtgcccat 14342
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 150 aaccacggcaagtttaaggcggagccgtggacggacgggcacgcgacgtactacggcggg 209
|||||||||||||| | ||||| ||| |||| | | | ||||||||||| ||||||||||
Sbjct: 13954 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 14013
Query: 210 cgcgacgggt 219
||||||||||
Sbjct: 14014 cgcgacgggt 14023
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0604E01
Length = 159049
Score = 131 bits (66), Expect = 8e-028
Identities = 225/278 (80%)
Strand = Plus / Plus
Query: 532 ggtacacgatcacagggaaccagcactacagcgaggtgaaggtgaccaacgtgggcggcg 591
|||||||||| || ||||||| | ||| || | ||||| |||| | ||||||||||| |
Sbjct: 128481 ggtacacgataaccgggaacccgtacttcaacctggtgatggtgtcgaacgtgggcgggg 128540
Query: 592 ccggggacgtggtggcgctgtgggtgaagggcaacaagcgcgtcaagtggacgccgatga 651
| || ||||||| | ||| | ||||||||| |||||| | || |||||||| ||| |||
Sbjct: 128541 cgggtgacgtggcagggctatcggtgaaggggaacaagagggtgaagtggactccgctga 128600
Query: 652 agcgcagctggggccagctctggaccacggaggtcgacctcaccggcgagtcgctgacgt 711
|||||| |||||| ||| ||| ||| || | ||||||||| |||||||||||||
Sbjct: 128601 agcgcaactgggggcaggagtggcagacgtcggaggtcctcaccggagagtcgctgacgt 128660
Query: 712 tccgcgtcatgaccgccgaccaccgcaaggctacctcctggcacgtcacgccccgcgact 771
|| | || ||||||| ||||||||||||||| ||||||||||||||| |||| |||||
Sbjct: 128661 tcagggtgatgaccggcgaccaccgcaaggccacctcctggcacgtcctcccccccgact 128720
Query: 772 ggcagttcggcaaaacgtaccaggccaccaagaacttc 809
||||||||||| || |||||||| ||||||||||||
Sbjct: 128721 ggcagttcggcgtcacctaccaggctaccaagaacttc 128758
Score = 75.8 bits (38), Expect = 4e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 421 gcgagcactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggca 480
||||||||||||||||| |||| ||||| || || ||||||| |||||||||||||||
Sbjct: 128295 gcgagcactttgacctctccatgccggcctttctgcagatcgcgcaggagaaggccggca 128354
Query: 481 tcgtgcccat 490
||||||||||
Sbjct: 128355 tcgtgcccat 128364
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 150 aaccacggcaagtttaaggcggagccgtggacggacgggcacgcgacgtactacggcggg 209
|||||||||||||| | ||||| ||| |||| | | | ||||||||||| ||||||||||
Sbjct: 127976 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 128035
Query: 210 cgcgacgggt 219
||||||||||
Sbjct: 128036 cgcgacgggt 128045
>gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018997, whole
genome shotgun sequence
Length = 21087
Score = 131 bits (66), Expect = 8e-028
Identities = 225/278 (80%)
Strand = Plus / Minus
Query: 532 ggtacacgatcacagggaaccagcactacagcgaggtgaaggtgaccaacgtgggcggcg 591
|||||||||| || ||||||| | ||| || | ||||| |||| | ||||||||||| |
Sbjct: 12353 ggtacacgataaccgggaacccgtacttcaacctggtgatggtgtcgaacgtgggcgggg 12294
Query: 592 ccggggacgtggtggcgctgtgggtgaagggcaacaagcgcgtcaagtggacgccgatga 651
| || ||||||| | ||| | ||||||||| |||||| | || |||||||| ||| |||
Sbjct: 12293 cgggtgacgtggcagggctatcggtgaaggggaacaagagggtgaagtggactccgctga 12234
Query: 652 agcgcagctggggccagctctggaccacggaggtcgacctcaccggcgagtcgctgacgt 711
|||||| |||||| ||| ||| ||| || | ||||||||| |||||||||||||
Sbjct: 12233 agcgcaactgggggcaggagtggcagacgtcggaggtcctcaccggagagtcgctgacgt 12174
Query: 712 tccgcgtcatgaccgccgaccaccgcaaggctacctcctggcacgtcacgccccgcgact 771
|| | || ||||||| ||||||||||||||| ||||||||||||||| |||| |||||
Sbjct: 12173 tcagggtgatgaccggcgaccaccgcaaggccacctcctggcacgtcctcccccccgact 12114
Query: 772 ggcagttcggcaaaacgtaccaggccaccaagaacttc 809
||||||||||| || |||||||| ||||||||||||
Sbjct: 12113 ggcagttcggcgtcacctaccaggctaccaagaacttc 12076
Score = 75.8 bits (38), Expect = 4e-011
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 421 gcgagcactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggca 480
||||||||||||||||| |||| ||||| || || ||||||| |||||||||||||||
Sbjct: 12539 gcgagcactttgacctctccatgccggcctttctgcagatcgcgcaggagaaggccggca 12480
Query: 481 tcgtgcccat 490
||||||||||
Sbjct: 12479 tcgtgcccat 12470
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 150 aaccacggcaagtttaaggcggagccgtggacggacgggcacgcgacgtactacggcggg 209
|||||||||||||| | ||||| ||| |||| | | | ||||||||||| ||||||||||
Sbjct: 12858 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 12799
Query: 210 cgcgacgggt 219
||||||||||
Sbjct: 12798 cgcgacgggt 12789
>gb|AACV01025196.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025196,
whole genome shotgun sequence
Length = 6673
Score = 131 bits (66), Expect = 8e-028
Identities = 117/134 (87%)
Strand = Plus / Minus
Query: 366 accgtggtggtgacggccaccaacgaggccccgccgccggtgagcgggcagaagggcgag 425
||||| |||||||||||||||||| |||| |||||||| |||| |||| ||||||||||
Sbjct: 396 accgtcgtggtgacggccaccaaccaggcgccgccgccagtgaacgggatgaagggcgag 337
Query: 426 cactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggcatcgtg 485
||||| ||||||||||| |||||||||||| ||||||||||||||| |||| |||||
Sbjct: 336 cacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtcgtg 277
Query: 486 cccatcacctaccg 499
||| || |||||||
Sbjct: 276 cccgtctcctaccg 263
Score = 69.9 bits (35), Expect = 3e-009
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 317 caacggcaccgggtgcggcgcgtgctacgagctcaaggg 355
||||||| |||||||||||||||||||||||||||||||
Sbjct: 448 caacggcgccgggtgcggcgcgtgctacgagctcaaggg 410
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 173 gccgtggacggacgggcacgcgacgtactacggcgggcgcgacg 216
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 583 gccgtgggtggacgggcacgcgacgttctacggcgggcgcgacg 540
>ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1088
Score = 131 bits (66), Expect = 8e-028
Identities = 225/278 (80%)
Strand = Plus / Plus
Query: 532 ggtacacgatcacagggaaccagcactacagcgaggtgaaggtgaccaacgtgggcggcg 591
|||||||||| || ||||||| | ||| || | ||||| |||| | ||||||||||| |
Sbjct: 606 ggtacacgataaccgggaacccgtacttcaacctggtgatggtgtcgaacgtgggcgggg 665
Query: 592 ccggggacgtggtggcgctgtgggtgaagggcaacaagcgcgtcaagtggacgccgatga 651
| || ||||||| | ||| | ||||||||| |||||| | || |||||||| ||| |||
Sbjct: 666 cgggtgacgtggcagggctatcggtgaaggggaacaagagggtgaagtggactccgctga 725
Query: 652 agcgcagctggggccagctctggaccacggaggtcgacctcaccggcgagtcgctgacgt 711
|||||| |||||| ||| ||| ||| || | ||||||||| |||||||||||||
Sbjct: 726 agcgcaactgggggcaggagtggcagacgtcggaggtcctcaccggagagtcgctgacgt 785
Query: 712 tccgcgtcatgaccgccgaccaccgcaaggctacctcctggcacgtcacgccccgcgact 771
|| | || ||||||| ||||||||||||||| ||||||||||||||| |||| |||||
Sbjct: 786 tcagggtgatgaccggcgaccaccgcaaggccacctcctggcacgtcctcccccccgact 845
Query: 772 ggcagttcggcaaaacgtaccaggccaccaagaacttc 809
||||||||||| || |||||||| ||||||||||||
Sbjct: 846 ggcagttcggcgtcacctaccaggctaccaagaacttc 883
Score = 75.8 bits (38), Expect = 4e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 421 gcgagcactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggca 480
||||||||||||||||| |||| ||||| || || ||||||| |||||||||||||||
Sbjct: 495 gcgagcactttgacctctccatgccggcctttctgcagatcgcgcaggagaaggccggca 554
Query: 481 tcgtgcccat 490
||||||||||
Sbjct: 555 tcgtgcccat 564
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 150 aaccacggcaagtttaaggcggagccgtggacggacgggcacgcgacgtactacggcggg 209
|||||||||||||| | ||||| ||| |||| | | | ||||||||||| ||||||||||
Sbjct: 176 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 235
Query: 210 cgcgacgggt 219
||||||||||
Sbjct: 236 cgcgacgggt 245
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 131 bits (66), Expect = 8e-028
Identities = 225/278 (80%)
Strand = Plus / Plus
Query: 532 ggtacacgatcacagggaaccagcactacagcgaggtgaaggtgaccaacgtgggcggcg 591
|||||||||| || ||||||| | ||| || | ||||| |||| | ||||||||||| |
Sbjct: 27892899 ggtacacgataaccgggaacccgtacttcaacctggtgatggtgtcgaacgtgggcgggg 27892958
Query: 592 ccggggacgtggtggcgctgtgggtgaagggcaacaagcgcgtcaagtggacgccgatga 651
| || ||||||| | ||| | ||||||||| |||||| | || |||||||| ||| |||
Sbjct: 27892959 cgggtgacgtggcagggctatcggtgaaggggaacaagagggtgaagtggactccgctga 27893018
Query: 652 agcgcagctggggccagctctggaccacggaggtcgacctcaccggcgagtcgctgacgt 711
|||||| |||||| ||| ||| ||| || | ||||||||| |||||||||||||
Sbjct: 27893019 agcgcaactgggggcaggagtggcagacgtcggaggtcctcaccggagagtcgctgacgt 27893078
Query: 712 tccgcgtcatgaccgccgaccaccgcaaggctacctcctggcacgtcacgccccgcgact 771
|| | || ||||||| ||||||||||||||| ||||||||||||||| |||| |||||
Sbjct: 27893079 tcagggtgatgaccggcgaccaccgcaaggccacctcctggcacgtcctcccccccgact 27893138
Query: 772 ggcagttcggcaaaacgtaccaggccaccaagaacttc 809
||||||||||| || |||||||| ||||||||||||
Sbjct: 27893139 ggcagttcggcgtcacctaccaggctaccaagaacttc 27893176
Score = 75.8 bits (38), Expect = 4e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 421 gcgagcactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggca 480
||||||||||||||||| |||| ||||| || || ||||||| |||||||||||||||
Sbjct: 27892713 gcgagcactttgacctctccatgccggcctttctgcagatcgcgcaggagaaggccggca 27892772
Query: 481 tcgtgcccat 490
||||||||||
Sbjct: 27892773 tcgtgcccat 27892782
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 150 aaccacggcaagtttaaggcggagccgtggacggacgggcacgcgacgtactacggcggg 209
|||||||||||||| | ||||| ||| |||| | | | ||||||||||| ||||||||||
Sbjct: 27892394 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 27892453
Query: 210 cgcgacgggt 219
||||||||||
Sbjct: 27892454 cgcgacgggt 27892463
Score = 48.1 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 26661158 gaggaggaggaggacggcggcggc 26661135
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 131 bits (66), Expect = 8e-028
Identities = 225/278 (80%)
Strand = Plus / Plus
Query: 532 ggtacacgatcacagggaaccagcactacagcgaggtgaaggtgaccaacgtgggcggcg 591
|||||||||| || ||||||| | ||| || | ||||| |||| | ||||||||||| |
Sbjct: 19206387 ggtacacgataaccgggaacccgtacttcaacctggtgatggtgtcgaacgtgggcgggg 19206446
Query: 592 ccggggacgtggtggcgctgtgggtgaagggcaacaagcgcgtcaagtggacgccgatga 651
| || ||||||| | ||| | ||||||||| |||||| | || |||||||| ||| |||
Sbjct: 19206447 cgggtgacgtggcagggctatcggtgaaggggaacaagagggtgaagtggactccgctga 19206506
Query: 652 agcgcagctggggccagctctggaccacggaggtcgacctcaccggcgagtcgctgacgt 711
|||||| |||||| ||| ||| ||| || | ||||||||| |||||||||||||
Sbjct: 19206507 agcgcaactgggggcaggagtggcagacgtcggaggtcctcaccggagagtcgctgacgt 19206566
Query: 712 tccgcgtcatgaccgccgaccaccgcaaggctacctcctggcacgtcacgccccgcgact 771
|| | || ||||||| ||||||||||||||| ||||||||||||||| |||| |||||
Sbjct: 19206567 tcagggtgatgaccggcgaccaccgcaaggccacctcctggcacgtcctcccccccgact 19206626
Query: 772 ggcagttcggcaaaacgtaccaggccaccaagaacttc 809
||||||||||| || |||||||| ||||||||||||
Sbjct: 19206627 ggcagttcggcgtcacctaccaggctaccaagaacttc 19206664
Score = 75.8 bits (38), Expect = 4e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 421 gcgagcactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggca 480
||||||||||||||||| |||| ||||| || || ||||||| |||||||||||||||
Sbjct: 19206201 gcgagcactttgacctctccatgccggcctttctgcagatcgcgcaggagaaggccggca 19206260
Query: 481 tcgtgcccat 490
||||||||||
Sbjct: 19206261 tcgtgcccat 19206270
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 150 aaccacggcaagtttaaggcggagccgtggacggacgggcacgcgacgtactacggcggg 209
|||||||||||||| | ||||| ||| |||| | | | ||||||||||| ||||||||||
Sbjct: 19205882 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 19205941
Query: 210 cgcgacgggt 219
||||||||||
Sbjct: 19205942 cgcgacgggt 19205951
Score = 48.1 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 18080661 gaggaggaggaggacggcggcggc 18080638
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 131 bits (66), Expect = 8e-028
Identities = 225/278 (80%)
Strand = Plus / Plus
Query: 532 ggtacacgatcacagggaaccagcactacagcgaggtgaaggtgaccaacgtgggcggcg 591
|||||||||| || ||||||| | ||| || | ||||| |||| | ||||||||||| |
Sbjct: 26808393 ggtacacgataaccgggaacccgtacttcaacctggtgatggtgtcgaacgtgggcgggg 26808452
Query: 592 ccggggacgtggtggcgctgtgggtgaagggcaacaagcgcgtcaagtggacgccgatga 651
| || ||||||| | ||| | ||||||||| |||||| | || |||||||| ||| |||
Sbjct: 26808453 cgggtgacgtggcagggctatcggtgaaggggaacaagagggtgaagtggactccgctga 26808512
Query: 652 agcgcagctggggccagctctggaccacggaggtcgacctcaccggcgagtcgctgacgt 711
|||||| |||||| ||| ||| ||| || | ||||||||| |||||||||||||
Sbjct: 26808513 agcgcaactgggggcaggagtggcagacgtcggaggtcctcaccggagagtcgctgacgt 26808572
Query: 712 tccgcgtcatgaccgccgaccaccgcaaggctacctcctggcacgtcacgccccgcgact 771
|| | || ||||||| ||||||||||||||| ||||||||||||||| |||| |||||
Sbjct: 26808573 tcagggtgatgaccggcgaccaccgcaaggccacctcctggcacgtcctcccccccgact 26808632
Query: 772 ggcagttcggcaaaacgtaccaggccaccaagaacttc 809
||||||||||| || |||||||| ||||||||||||
Sbjct: 26808633 ggcagttcggcgtcacctaccaggctaccaagaacttc 26808670
Score = 75.8 bits (38), Expect = 4e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 421 gcgagcactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggca 480
||||||||||||||||| |||| ||||| || || ||||||| |||||||||||||||
Sbjct: 26808207 gcgagcactttgacctctccatgccggcctttctgcagatcgcgcaggagaaggccggca 26808266
Query: 481 tcgtgcccat 490
||||||||||
Sbjct: 26808267 tcgtgcccat 26808276
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 150 aaccacggcaagtttaaggcggagccgtggacggacgggcacgcgacgtactacggcggg 209
|||||||||||||| | ||||| ||| |||| | | | ||||||||||| ||||||||||
Sbjct: 26807888 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 26807947
Query: 210 cgcgacgggt 219
||||||||||
Sbjct: 26807948 cgcgacgggt 26807957
Score = 48.1 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 25682667 gaggaggaggaggacggcggcggc 25682644
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 131 bits (66), Expect = 8e-028
Identities = 225/278 (80%)
Strand = Plus / Plus
Query: 532 ggtacacgatcacagggaaccagcactacagcgaggtgaaggtgaccaacgtgggcggcg 591
|||||||||| || ||||||| | ||| || | ||||| |||| | ||||||||||| |
Sbjct: 28130986 ggtacacgataaccgggaacccgtacttcaacctggtgatggtgtcgaacgtgggcgggg 28131045
Query: 592 ccggggacgtggtggcgctgtgggtgaagggcaacaagcgcgtcaagtggacgccgatga 651
| || ||||||| | ||| | ||||||||| |||||| | || |||||||| ||| |||
Sbjct: 28131046 cgggtgacgtggcagggctatcggtgaaggggaacaagagggtgaagtggactccgctga 28131105
Query: 652 agcgcagctggggccagctctggaccacggaggtcgacctcaccggcgagtcgctgacgt 711
|||||| |||||| ||| ||| ||| || | ||||||||| |||||||||||||
Sbjct: 28131106 agcgcaactgggggcaggagtggcagacgtcggaggtcctcaccggagagtcgctgacgt 28131165
Query: 712 tccgcgtcatgaccgccgaccaccgcaaggctacctcctggcacgtcacgccccgcgact 771
|| | || ||||||| ||||||||||||||| ||||||||||||||| |||| |||||
Sbjct: 28131166 tcagggtgatgaccggcgaccaccgcaaggccacctcctggcacgtcctcccccccgact 28131225
Query: 772 ggcagttcggcaaaacgtaccaggccaccaagaacttc 809
||||||||||| || |||||||| ||||||||||||
Sbjct: 28131226 ggcagttcggcgtcacctaccaggctaccaagaacttc 28131263
Score = 75.8 bits (38), Expect = 4e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 421 gcgagcactttgacctcaccataccggcgttcctcaagatcgccgaggagaaggccggca 480
||||||||||||||||| |||| ||||| || || ||||||| |||||||||||||||
Sbjct: 28130800 gcgagcactttgacctctccatgccggcctttctgcagatcgcgcaggagaaggccggca 28130859
Query: 481 tcgtgcccat 490
||||||||||
Sbjct: 28130860 tcgtgcccat 28130869
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 150 aaccacggcaagtttaaggcggagccgtggacggacgggcacgcgacgtactacggcggg 209
|||||||||||||| | ||||| ||| |||| | | | ||||||||||| ||||||||||
Sbjct: 28130481 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 28130540
Query: 210 cgcgacgggt 219
||||||||||
Sbjct: 28130541 cgcgacgggt 28130550
Score = 48.1 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 26899245 gaggaggaggaggacggcggcggc 26899222
>gb|AU172681.1|AU172681 AU172681 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4381, mRNA sequence
Length = 446
Score = 69.9 bits (35), Expect = 3e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 317 caacggcaccgggtgcggcgcgtgctacgagctcaaggg 355
||||||| |||||||||||||||||||||||||||||||
Sbjct: 372 caacggcgccgggtgcggcgcgtgctacgagctcaaggg 410
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 173 gccgtggacggacgggcacgcgacgtactacggcgggcgcgacg 216
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 237 gccgtgggtggacgggcacgcgacgttctacggcgggcgcgacg 280
>gb|AU182573.1|AU182573 AU182573 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4432, mRNA sequence
Length = 443
Score = 69.9 bits (35), Expect = 3e-009
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 317 caacggcaccgggtgcggcgcgtgctacgagctcaaggg 355
||||||| |||||||||||||||||||||||||||||||
Sbjct: 372 caacggcgccgggtgcggcgcgtgctacgagctcaaggg 410
Score = 63.9 bits (32), Expect = 2e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 173 gccgtggacggacgggcacgcgacgtactacggcgggcgcgacg 216
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 237 gccgtgggtggacgggcacgcgacgttctacggcgggcgcgacg 280
>gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07L24 5', mRNA sequence
Length = 838
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 684 ggtgaccaacgtgggcggcgccggcgacgtg 714
>gb|CB645780.1|CB645780 OSJNEb07L24.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07L24 3', mRNA sequence
Length = 735
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 671 ggtgaccaacgtgggcggcgccggcgacgtg 641
>dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044E11, full
insert sequence
Length = 1416
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 715 ggtgaccaacgtgggcggcgccggcgacgtg 745
>dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-F08, full
insert sequence
Length = 1290
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 710 ggtgaccaacgtgggcggcgccggcgacgtg 740
>gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005399, whole
genome shotgun sequence
Length = 41834
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 21362 ggtgaccaacgtgggcggcgccggcgacgtg 21392
>ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1289
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 710 ggtgaccaacgtgggcggcgccggcgacgtg 740
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 6404963 ggtgaccaacgtgggcggcgccggcgacgtg 6404993
>ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1734_E02.30
mRNA
Length = 1417
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 716 ggtgaccaacgtgggcggcgccggcgacgtg 746
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1118_G04
Length = 134464
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 9832 ggtgaccaacgtgggcggcgccggcgacgtg 9862
>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1734_E02
Length = 168566
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 119807 ggtgaccaacgtgggcggcgccggcgacgtg 119837
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 17796127 ggtgaccaacgtgggcggcgccggcgacgtg 17796157
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 31249191 ggtgaccaacgtgggcggcgccggcgacgtg 31249221
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 110 ggaggaggaggacggcggcggc 131
||||||||||||||||||||||
Sbjct: 2149714 ggaggaggaggacggcggcggc 2149735
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 572 ggtgaccaacgtgggcggcgccggggacgtg 602
|||||||||||||||||||||||| ||||||
Sbjct: 31239964 ggtgaccaacgtgggcggcgccggcgacgtg 31239994
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 110 ggaggaggaggacggcggcggc 131
||||||||||||||||||||||
Sbjct: 2125333 ggaggaggaggacggcggcggc 2125354
>dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0482D04
Length = 144583
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 107 cgaggaggaggaggacggcggcggc 131
|||||||||||||||||||||||||
Sbjct: 73679 cgaggaggaggaggacggcggcggc 73703
>gb|AACV01002974.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002974, whole
genome shotgun sequence
Length = 29145
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 107 cgaggaggaggaggacggcggcggc 131
|||||||||||||||||||||||||
Sbjct: 4845 cgaggaggaggaggacggcggcggc 4821
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 107 cgaggaggaggaggacggcggcggc 131
|||||||||||||||||||||||||
Sbjct: 40674334 cgaggaggaggaggacggcggcggc 40674358
Score = 46.1 bits (23), Expect = 0.037
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 576 accaacgtgggcggcgccggggacgtggtggcgctgtgggtgaaggg 622
|||||||| ||||||||||| |||||| |||| ||| |||||||||
Sbjct: 9523452 accaacgtcggcggcgccggcgacgtgacggcggtgtcggtgaaggg 9523498
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 363 ggcaccgtggtggtgacggccaccaac 389
|||||||||| ||||||||||||||||
Sbjct: 9523212 ggcaccgtggcggtgacggccaccaac 9523238
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 107 cgaggaggaggaggacggcggcg 129
|||||||||||||||||||||||
Sbjct: 6264393 cgaggaggaggaggacggcggcg 6264371
>ref|XM_463676.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 363
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 107 cgaggaggaggaggacggcggcggc 131
|||||||||||||||||||||||||
Sbjct: 195 cgaggaggaggaggacggcggcggc 219
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 107 cgaggaggaggaggacggcggcggc 131
|||||||||||||||||||||||||
Sbjct: 302628 cgaggaggaggaggacggcggcggc 302652
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0093F16
Length = 160925
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 107 cgaggaggaggaggacggcggcggc 131
|||||||||||||||||||||||||
Sbjct: 35642 cgaggaggaggaggacggcggcggc 35666
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 107 cgaggaggaggaggacggcggcggc 131
|||||||||||||||||||||||||
Sbjct: 14871813 cgaggaggaggaggacggcggcggc 14871837
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 107 cgaggaggaggaggacggcggcggc 131
|||||||||||||||||||||||||
Sbjct: 40073534 cgaggaggaggaggacggcggcggc 40073558
Score = 46.1 bits (23), Expect = 0.037
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 576 accaacgtgggcggcgccggggacgtggtggcgctgtgggtgaaggg 622
|||||||| ||||||||||| |||||| |||| ||| |||||||||
Sbjct: 9573166 accaacgtcggcggcgccggcgacgtgacggcggtgtcggtgaaggg 9573212
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 363 ggcaccgtggtggtgacggccaccaac 389
|||||||||| ||||||||||||||||
Sbjct: 9572925 ggcaccgtggcggtgacggccaccaac 9572951
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 107 cgaggaggaggaggacggcggcg 129
|||||||||||||||||||||||
Sbjct: 6330123 cgaggaggaggaggacggcggcg 6330101
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 107 cgaggaggaggaggacggcggcggc 131
|||||||||||||||||||||||||
Sbjct: 40593664 cgaggaggaggaggacggcggcggc 40593688
Score = 46.1 bits (23), Expect = 0.037
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 576 accaacgtgggcggcgccggggacgtggtggcgctgtgggtgaaggg 622
|||||||| ||||||||||| |||||| |||| ||| |||||||||
Sbjct: 9525670 accaacgtcggcggcgccggcgacgtgacggcggtgtcggtgaaggg 9525716
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 363 ggcaccgtggtggtgacggccaccaac 389
|||||||||| ||||||||||||||||
Sbjct: 9525430 ggcaccgtggcggtgacggccaccaac 9525456
Score = 46.1 bits (23), Expect = 0.037
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 107 cgaggaggaggaggacggcggcg 129
|||||||||||||||||||||||
Sbjct: 6266611 cgaggaggaggaggacggcggcg 6266589
>gb|AU173825.1|AU173825 AU173825 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3956, mRNA sequence
Length = 286
Score = 48.1 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 108 gaggaggaggaggacggcggcggc 85
>gb|CB670393.1|CB670393 OSJNEe03H01.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03H01 5', mRNA sequence
Length = 801
Score = 48.1 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 489 gaggaggaggaggacggcggcggc 512
>dbj|AK061062.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A06, full
insert sequence
Length = 1681
Score = 48.1 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 120 gaggaggaggaggacggcggcggc 97
>dbj|AK069996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040B08, full
insert sequence
Length = 1502
Score = 48.1 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 337 gaggaggaggaggacggcggcggc 360
>dbj|AK109983.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-D10, full
insert sequence
Length = 1576
Score = 48.1 bits (24), Expect = 0.009
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 gaggaggaggaggacggcggcggc 131
||||||||||||||||||||||||
Sbjct: 1059 gaggaggaggaggacggcggcggc 1082
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,016,037
Number of Sequences: 438736
Number of extensions: 2016037
Number of successful extensions: 34274
Number of sequences better than 0.5: 170
Number of HSP's better than 0.5 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29421
Number of HSP's gapped (non-prelim): 4799
length of query: 1019
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 998
effective length of database: 2,791,206,460
effective search space: 2785624047080
effective search space used: 2785624047080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)