BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3184927.2.1
(1157 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP184676.1|BP184676 BP184676 pNS rice panicle cDNA, germ... 163 3e-037
dbj|AK099770.1| Oryza sativa (japonica cultivar-group) cDNA... 163 3e-037
dbj|AB110186.1| Oryza sativa (japonica cultivar-group) mRNA... 163 3e-037
gb|AU312203.1|AU312203 AU312203 Oryza sativa anther cDNA Or... 161 1e-036
gb|C73757.1|C73757 C73757 Rice panicle (longer than 10cm) O... 115 6e-023
gb|AC099403.1| Oryza sativa (japonica cultivar-group) chrom... 98 1e-017
gb|AC108757.1| Oryza sativa (japonica cultivar-group) chrom... 98 1e-017
gb|AACV01020329.1| Oryza sativa (japonica cultivar-group) c... 98 1e-017
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 98 1e-017
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 98 1e-017
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 98 1e-017
dbj|AP003903.2| Oryza sativa (japonica cultivar-group) chro... 84 2e-013
dbj|AP004761.3| Oryza sativa (japonica cultivar-group) geno... 84 2e-013
gb|AACV01018850.1| Oryza sativa (japonica cultivar-group) c... 84 2e-013
ref|XM_483338.1| Oryza sativa (japonica cultivar-group), mRNA 84 2e-013
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 84 2e-013
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 84 2e-013
ref|NM_189001.1| Oryza sativa (japonica cultivar-group), mRNA 64 2e-007
gb|AQ867193.1|AQ867193 nbeb0031C01f CUGI Rice BAC Library (... 58 1e-005
>gb|BP184676.1|BP184676 BP184676 pNS rice panicle cDNA, germ cell generating stage Oryza
sativa (japonica cultivar-group) cDNA clone 14FPG037,
mRNA sequence
Length = 1210
Score = 163 bits (82), Expect = 3e-037
Identities = 247/302 (81%)
Strand = Plus / Minus
Query: 418 tcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttccg 477
||||||||||| ||||||| |||||| || ||||||||||| || || |||||||| ||
Sbjct: 748 tcgtacaccagaatgtggcagctcgccacatcgtcgatgtgaacatatcccattctccca 689
Query: 478 tacgagctgaaccttgccgtgtcgccttggaataggcctaggacgtctgaagcggtaacg 537
|||||| |||| || | ||||| ||||| | || ||| |||| ||||||||| || ||
Sbjct: 688 tacgagatgaatctatctgtgtcaccttgaagtaagccaaggatgtctgaagcagtgaca 629
Query: 538 catagttcgtgggacaaactgggcccgatcacgaacgacgggaggacagtcacaaggtcg 597
| ||||| || || ||||||||||| ||||| || || || || ||||| ||||||||
Sbjct: 628 gacagttcatgtgataaactgggcccaatcacaaatgatggaagaacagttacaaggtca 569
Query: 598 atgccgttctccttggcgaactcccacgccgctttctctgcaaataccttggctagggca 657
||| |||||||||||| |||||||| ||||||||||||||| ||| ||| || ||||||
Sbjct: 568 atgttgttctccttggcaaactcccatgccgctttctctgcagatatctttgccagggca 509
Query: 658 taccatagatgcatcttctcgcagagtggcacggagctccatgtcgtttcgtccagcgag 717
|||||||| || | ||| || ||||||| ||| ||||||||| | ||||| ||||| |||
Sbjct: 508 taccatagctgtagcttttcacagagtgccacagagctccatattgtttcatccagtgag 449
Query: 718 at 719
||
Sbjct: 448 at 447
Score = 121 bits (61), Expect = 9e-025
Identities = 292/369 (79%)
Strand = Plus / Minus
Query: 772 gtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttcagagta 831
||||| || ||||||||||| || || ||||||||||| ||| ||||||| |||||||||
Sbjct: 397 gtaagaacaacccttttcagaaatggattcttcttgcaagatttcagcacattcagagta 338
Query: 832 ccgttcaccgcagggacgagcgtgtcctccttgctagtagagtcgggtttagcgaggacg 891
|| || | |||||| || ||| | || ||||||| | | || || | ||| || |||||
Sbjct: 337 ccatttatcgcaggaacaagcatttcttccttgcaattggaatcagatttggcaaggaca 278
Query: 892 ggggatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttct 951
|| |||||||||||||| || || || || |||||||| || ||| ||||||||||||
Sbjct: 277 ggcgatgcagtgtggaagacgccttcgcaagccatcacagcatcgtcaaagctcccttct 218
Query: 952 tccaacagatcagctcgcacgatttgcagcctctctttagcgccaggtaatttccaaagg 1011
|||| ||||||||||| ||| | |||||||||||| || || | |||||| ||||||||
Sbjct: 217 tccatcagatcagctctcacaagttgcagcctctcctttgcacttggtaatctccaaagg 158
Query: 1012 tgggctgtcttttggtgatttcctgggtccctgacagtccctaccacatgatatccagac 1071
|| | || | | |||| | |||||| || ||||| |||| ||||||||| || | |
Sbjct: 157 tgtgacactttatcgcgattgcttgggtctctcacagttcctatcacatgatagcccgcc 98
Query: 1072 tcgaggagccgtttgataagccaagaggcaacaaagcctgaggccccggttacgcatacc 1131
|| || |||| ||||| ||||||||||| || |||||||| || || ||||| || ||
Sbjct: 97 tcaagaagcctcttgatgagccaagaggcgacgaagcctgaagcaccagttacacacact 38
Query: 1132 ttgcccttg 1140
|||||||||
Sbjct: 37 ttgcccttg 29
Score = 69.9 bits (35), Expect = 3e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 166 gggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaacatctcc 225
||||||||||||| ||||||||| ||||| ||||||| || || || | ||||||||
Sbjct: 1000 gggcactccagcaagtgtccctgatctttcagcgactcgacacaatcaccaaacatctct 941
Query: 226 tgcacccctctgaacttgaagcccagc 252
||||||||| |||||||||| ||||||
Sbjct: 940 tgcacccctttgaacttgaaacccagc 914
>dbj|AK099770.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095D01, full
insert sequence
Length = 2836
Score = 163 bits (82), Expect = 3e-037
Identities = 247/302 (81%)
Strand = Plus / Minus
Query: 418 tcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttccg 477
||||||||||| ||||||| |||||| || ||||||||||| || || |||||||| ||
Sbjct: 2366 tcgtacaccagaatgtggcagctcgccacatcgtcgatgtgaacatatcccattctccca 2307
Query: 478 tacgagctgaaccttgccgtgtcgccttggaataggcctaggacgtctgaagcggtaacg 537
|||||| |||| || | ||||| ||||| | || ||| |||| ||||||||| || ||
Sbjct: 2306 tacgagatgaatctatctgtgtcaccttgaagtaagccaaggatgtctgaagcagtgaca 2247
Query: 538 catagttcgtgggacaaactgggcccgatcacgaacgacgggaggacagtcacaaggtcg 597
| ||||| || || ||||||||||| ||||| || || || || ||||| ||||||||
Sbjct: 2246 gacagttcatgtgataaactgggcccaatcacaaatgatggaagaacagttacaaggtca 2187
Query: 598 atgccgttctccttggcgaactcccacgccgctttctctgcaaataccttggctagggca 657
||| |||||||||||| |||||||| ||||||||||||||| ||| ||| || ||||||
Sbjct: 2186 atgttgttctccttggcaaactcccatgccgctttctctgcagatatctttgccagggca 2127
Query: 658 taccatagatgcatcttctcgcagagtggcacggagctccatgtcgtttcgtccagcgag 717
|||||||| || | ||| || ||||||| ||| ||||||||| | ||||| ||||| |||
Sbjct: 2126 taccatagctgtagcttttcacagagtgccacagagctccatattgtttcatccagtgag 2067
Query: 718 at 719
||
Sbjct: 2066 at 2065
Score = 121 bits (61), Expect = 9e-025
Identities = 292/369 (79%)
Strand = Plus / Minus
Query: 772 gtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttcagagta 831
||||| || ||||||||||| || || ||||||||||| ||| ||||||| |||||||||
Sbjct: 2015 gtaagaacaacccttttcagaaatggattcttcttgcaagatttcagcacattcagagta 1956
Query: 832 ccgttcaccgcagggacgagcgtgtcctccttgctagtagagtcgggtttagcgaggacg 891
|| || | |||||| || ||| | || ||||||| | | || || | ||| || |||||
Sbjct: 1955 ccatttatcgcaggaacaagcatttcttccttgcaattggaatcagatttggcaaggaca 1896
Query: 892 ggggatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttct 951
|| |||||||||||||| || || || || |||||||| || ||| ||||||||||||
Sbjct: 1895 ggcgatgcagtgtggaagacgccttcgcaagccatcacagcatcgtcaaagctcccttct 1836
Query: 952 tccaacagatcagctcgcacgatttgcagcctctctttagcgccaggtaatttccaaagg 1011
|||| ||||||||||| ||| | |||||||||||| || || | |||||| ||||||||
Sbjct: 1835 tccatcagatcagctctcacaagttgcagcctctcctttgcacttggtaatctccaaagg 1776
Query: 1012 tgggctgtcttttggtgatttcctgggtccctgacagtccctaccacatgatatccagac 1071
|| | || | | |||| | |||||| || ||||| |||| ||||||||| || | |
Sbjct: 1775 tgtgacactttatcgcgattgcttgggtctctcacagttcctatcacatgatagcccgcc 1716
Query: 1072 tcgaggagccgtttgataagccaagaggcaacaaagcctgaggccccggttacgcatacc 1131
|| || |||| ||||| ||||||||||| || |||||||| || || ||||| || ||
Sbjct: 1715 tcaagaagcctcttgatgagccaagaggcgacgaagcctgaagcaccagttacacacact 1656
Query: 1132 ttgcccttg 1140
|||||||||
Sbjct: 1655 ttgcccttg 1647
Score = 69.9 bits (35), Expect = 3e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 166 gggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaacatctcc 225
||||||||||||| ||||||||| ||||| ||||||| || || || | ||||||||
Sbjct: 2618 gggcactccagcaagtgtccctgatctttcagcgactcgacacaatcaccaaacatctct 2559
Query: 226 tgcacccctctgaacttgaagcccagc 252
||||||||| |||||||||| ||||||
Sbjct: 2558 tgcacccctttgaacttgaaacccagc 2532
>dbj|AB110186.1| Oryza sativa (japonica cultivar-group) mRNA for dihydroflavonol
reductase, complete cds, clone: 14FPG037
Length = 1194
Score = 163 bits (82), Expect = 3e-037
Identities = 247/302 (81%)
Strand = Plus / Minus
Query: 418 tcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttccg 477
||||||||||| ||||||| |||||| || ||||||||||| || || |||||||| ||
Sbjct: 748 tcgtacaccagaatgtggcagctcgccacatcgtcgatgtgaacatatcccattctccca 689
Query: 478 tacgagctgaaccttgccgtgtcgccttggaataggcctaggacgtctgaagcggtaacg 537
|||||| |||| || | ||||| ||||| | || ||| |||| ||||||||| || ||
Sbjct: 688 tacgagatgaatctatctgtgtcaccttgaagtaagccaaggatgtctgaagcagtgaca 629
Query: 538 catagttcgtgggacaaactgggcccgatcacgaacgacgggaggacagtcacaaggtcg 597
| ||||| || || ||||||||||| ||||| || || || || ||||| ||||||||
Sbjct: 628 gacagttcatgtgataaactgggcccaatcacaaatgatggaagaacagttacaaggtca 569
Query: 598 atgccgttctccttggcgaactcccacgccgctttctctgcaaataccttggctagggca 657
||| |||||||||||| |||||||| ||||||||||||||| ||| ||| || ||||||
Sbjct: 568 atgttgttctccttggcaaactcccatgccgctttctctgcagatatctttgccagggca 509
Query: 658 taccatagatgcatcttctcgcagagtggcacggagctccatgtcgtttcgtccagcgag 717
|||||||| || | ||| || ||||||| ||| ||||||||| | ||||| ||||| |||
Sbjct: 508 taccatagctgtagcttttcacagagtgccacagagctccatattgtttcatccagtgag 449
Query: 718 at 719
||
Sbjct: 448 at 447
Score = 121 bits (61), Expect = 9e-025
Identities = 292/369 (79%)
Strand = Plus / Minus
Query: 772 gtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttcagagta 831
||||| || ||||||||||| || || ||||||||||| ||| ||||||| |||||||||
Sbjct: 397 gtaagaacaacccttttcagaaatggattcttcttgcaagatttcagcacattcagagta 338
Query: 832 ccgttcaccgcagggacgagcgtgtcctccttgctagtagagtcgggtttagcgaggacg 891
|| || | |||||| || ||| | || ||||||| | | || || | ||| || |||||
Sbjct: 337 ccatttatcgcaggaacaagcatttcttccttgcaattggaatcagatttggcaaggaca 278
Query: 892 ggggatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttct 951
|| |||||||||||||| || || || || |||||||| || ||| ||||||||||||
Sbjct: 277 ggcgatgcagtgtggaagacgccttcgcaagccatcacagcatcgtcaaagctcccttct 218
Query: 952 tccaacagatcagctcgcacgatttgcagcctctctttagcgccaggtaatttccaaagg 1011
|||| ||||||||||| ||| | |||||||||||| || || | |||||| ||||||||
Sbjct: 217 tccatcagatcagctctcacaagttgcagcctctcctttgcacttggtaatctccaaagg 158
Query: 1012 tgggctgtcttttggtgatttcctgggtccctgacagtccctaccacatgatatccagac 1071
|| | || | | |||| | |||||| || ||||| |||| ||||||||| || | |
Sbjct: 157 tgtgacactttatcgcgattgcttgggtctctcacagttcctatcacatgatagcccgcc 98
Query: 1072 tcgaggagccgtttgataagccaagaggcaacaaagcctgaggccccggttacgcatacc 1131
|| || |||| ||||| ||||||||||| || |||||||| || || ||||| || ||
Sbjct: 97 tcaagaagcctcttgatgagccaagaggcgacgaagcctgaagcaccagttacacacact 38
Query: 1132 ttgcccttg 1140
|||||||||
Sbjct: 37 ttgcccttg 29
Score = 69.9 bits (35), Expect = 3e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 166 gggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaacatctcc 225
||||||||||||| ||||||||| ||||| ||||||| || || || | ||||||||
Sbjct: 1000 gggcactccagcaagtgtccctgatctttcagcgactcgacacaatcaccaaacatctct 941
Query: 226 tgcacccctctgaacttgaagcccagc 252
||||||||| |||||||||| ||||||
Sbjct: 940 tgcacccctttgaacttgaaacccagc 914
>gb|AU312203.1|AU312203 AU312203 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1891, mRNA sequence
Length = 757
Score = 161 bits (81), Expect = 1e-036
Identities = 246/301 (81%)
Strand = Plus / Plus
Query: 418 tcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttccg 477
||||||||||| ||||||| |||||| || ||||||||||| || || |||||||| ||
Sbjct: 443 tcgtacaccagaatgtggcagctcgccacatcgtcgatgtgaacatatcccattctccca 502
Query: 478 tacgagctgaaccttgccgtgtcgccttggaataggcctaggacgtctgaagcggtaacg 537
|||||| |||| || | ||||| ||||| | || ||| |||| ||||||||| || ||
Sbjct: 503 tacgagatgaatctatctgtgtcaccttgaagtaagccaaggatgtctgaagcagtgaca 562
Query: 538 catagttcgtgggacaaactgggcccgatcacgaacgacgggaggacagtcacaaggtcg 597
| ||||| || || ||||||||||| ||||| || || || || ||||| ||||||||
Sbjct: 563 gacagttcatgtgataaactgggcccaatcacaaatgatggaagaacagttacaaggtca 622
Query: 598 atgccgttctccttggcgaactcccacgccgctttctctgcaaataccttggctagggca 657
||| |||||||||||| |||||||| ||||||||||||||| ||| ||| || ||||||
Sbjct: 623 atgttgttctccttggcaaactcccatgccgctttctctgcagatatctttgccagggca 682
Query: 658 taccatagatgcatcttctcgcagagtggcacggagctccatgtcgtttcgtccagcgag 717
|||||||| || | ||| || ||||||| ||| ||||||||| | ||||| ||||| |||
Sbjct: 683 taccatagctgtagcttttcacagagtgccacagagctccatattgtttcatccagtgag 742
Query: 718 a 718
|
Sbjct: 743 a 743
Score = 69.9 bits (35), Expect = 3e-009
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 166 gggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaacatctcc 225
||||||||||||| ||||||||| ||||| ||||||| || || || | ||||||||
Sbjct: 191 gggcactccagcaagtgtccctgatctttcagcgactcgacacaatcaccaaacatctct 250
Query: 226 tgcacccctctgaacttgaagcccagc 252
||||||||| |||||||||| ||||||
Sbjct: 251 tgcacccctttgaacttgaaacccagc 277
>gb|C73757.1|C73757 C73757 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20395_1A, mRNA sequence
Length = 455
Score = 115 bits (58), Expect = 6e-023
Identities = 291/369 (78%)
Strand = Plus / Minus
Query: 772 gtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttcagagta 831
||||| || ||||||||||| || || ||| ||||||| ||| ||||||| |||||||||
Sbjct: 399 gtaagaacaacccttttcagaaatggattcntcttgcaagatttcagcacattcagagta 340
Query: 832 ccgttcaccgcagggacgagcgtgtcctccttgctagtagagtcgggtttagcgaggacg 891
|| || | |||||| || ||| | || ||||||| | | || || | ||| || |||||
Sbjct: 339 ccatttatcgcaggaacaagcatttcttccttgcaattggaatcagatttggcaaggaca 280
Query: 892 ggggatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttct 951
|| |||||||||||||| || || || || |||||||| || ||| ||||||||||||
Sbjct: 279 ggcgatgcagtgtggaagacgccttcgcaagccatcacagcatcgtcaaagctcccttct 220
Query: 952 tccaacagatcagctcgcacgatttgcagcctctctttagcgccaggtaatttccaaagg 1011
|||| ||||||||||| ||| | |||||||||||| || || | |||||| ||||||||
Sbjct: 219 tccatcagatcagctctcacaagttgcagcctctcctttgcacttggtaatctccaaagg 160
Query: 1012 tgggctgtcttttggtgatttcctgggtccctgacagtccctaccacatgatatccagac 1071
|| | || | | |||| | |||||| || ||||| |||| ||||||||| || | |
Sbjct: 159 tgtgacactttatcgcgattgcttgggtctctcacagttcctatcacatgatagcccgcc 100
Query: 1072 tcgaggagccgtttgataagccaagaggcaacaaagcctgaggccccggttacgcatacc 1131
|| || |||| ||||| ||||||||||| || |||||||| || || ||||| || ||
Sbjct: 99 tcaagaagcctcttgatgagccaagaggcgacgaagcctgaagcaccagttacacacact 40
Query: 1132 ttgcccttg 1140
|||||||||
Sbjct: 39 ttgcccttg 31
>gb|AC099403.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNBa0005C18, *** SEQUENCING IN PROGRESS ***, 5 ordered
pieces
Length = 145550
Score = 97.6 bits (49), Expect = 1e-017
Identities = 97/113 (85%)
Strand = Plus / Minus
Query: 553 aaactgggcccgatcacgaacgacgggaggacagtcacaaggtcgatgccgttctccttg 612
||||||||||| ||||| || || || || ||||| |||||||| ||| ||||||||||
Sbjct: 67673 aaactgggcccaatcacaaatgatggaagaacagttacaaggtcaatgttgttctccttg 67614
Query: 613 gcgaactcccacgccgctttctctgcaaataccttggctagggcataccatag 665
|| |||||||| ||||||||||||||| ||| ||| || ||||||||||||||
Sbjct: 67613 gcaaactcccatgccgctttctctgcagatatctttgccagggcataccatag 67561
Score = 79.8 bits (40), Expect = 3e-012
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 886 aggacgggggatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctc 945
||||| || |||||||||||||| || || || || |||||||| || ||| ||||||
Sbjct: 67136 aggacaggcgatgcagtgtggaagacgccttcgcaagccatcacagcatcgtcaaagctc 67077
Query: 946 ccttcttccaacagatcagctcgcacgatttgcagcctctctttagcgccaggtaatttc 1005
|||||||||| ||||||||||| ||| | |||||||||||| || || | |||||| ||
Sbjct: 67076 ccttcttccatcagatcagctctcacaagttgcagcctctcctttgcacttggtaatctc 67017
Query: 1006 caaaggtg 1013
||||||||
Sbjct: 67016 caaaggtg 67009
Score = 69.9 bits (35), Expect = 3e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 166 gggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaacatctcc 225
||||||||||||| ||||||||| ||||| ||||||| || || || | ||||||||
Sbjct: 68339 gggcactccagcaagtgtccctgatctttcagcgactcgacacaatcaccaaacatctct 68280
Query: 226 tgcacccctctgaacttgaagcccagc 252
||||||||| |||||||||| ||||||
Sbjct: 68279 tgcacccctttgaacttgaaacccagc 68253
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 418 tcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttccg 477
||||||||||| ||||||| |||||| || ||||||||||| || || |||||||| ||
Sbjct: 67965 tcgtacaccagaatgtggcagctcgccacatcgtcgatgtgaacatatcccattctccca 67906
Query: 478 tacgagctgaa 488
|||||| ||||
Sbjct: 67905 tacgagatgaa 67895
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 772 gtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttcagagta 831
||||| || ||||||||||| || || ||||||||||| ||| ||||||| |||||||||
Sbjct: 67361 gtaagaacaacccttttcagaaatggattcttcttgcaagatttcagcacattcagagta 67302
Query: 832 cc 833
||
Sbjct: 67301 cc 67300
Score = 52.0 bits (26), Expect = 7e-004
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 1035 tgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagcca 1094
|||||| || ||||| |||| ||||||||| || | ||| || |||| ||||| |||||
Sbjct: 66884 tgggtctctcacagttcctatcacatgatagcccgcctcaagaagcctcttgatgagcca 66825
Query: 1095 agaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||| || |||||||| || || ||||| || || |||||||||
Sbjct: 66824 agaggcgacgaagcctgaagcaccagttacacacactttgcccttg 66779
>gb|AC108757.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNba0056P13, *** SEQUENCING IN PROGRESS ***, 9 ordered
pieces
Length = 173729
Score = 97.6 bits (49), Expect = 1e-017
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 553 aaactgggcccgatcacgaacgacgggaggacagtcacaaggtcgatgccgttctccttg 612
||||||||||| ||||| || || || || ||||| |||||||| ||| ||||||||||
Sbjct: 19892 aaactgggcccaatcacaaatgatggaagaacagttacaaggtcaatgttgttctccttg 19951
Query: 613 gcgaactcccacgccgctttctctgcaaataccttggctagggcataccatag 665
|| |||||||| ||||||||||||||| ||| ||| || ||||||||||||||
Sbjct: 19952 gcaaactcccatgccgctttctctgcagatatctttgccagggcataccatag 20004
Score = 79.8 bits (40), Expect = 3e-012
Identities = 106/128 (82%)
Strand = Plus / Plus
Query: 886 aggacgggggatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctc 945
||||| || |||||||||||||| || || || || |||||||| || ||| ||||||
Sbjct: 20429 aggacaggcgatgcagtgtggaagacgccttcgcaagccatcacagcatcgtcaaagctc 20488
Query: 946 ccttcttccaacagatcagctcgcacgatttgcagcctctctttagcgccaggtaatttc 1005
|||||||||| ||||||||||| ||| | |||||||||||| || || | |||||| ||
Sbjct: 20489 ccttcttccatcagatcagctctcacaagttgcagcctctcctttgcacttggtaatctc 20548
Query: 1006 caaaggtg 1013
||||||||
Sbjct: 20549 caaaggtg 20556
Score = 69.9 bits (35), Expect = 3e-009
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 166 gggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaacatctcc 225
||||||||||||| ||||||||| ||||| ||||||| || || || | ||||||||
Sbjct: 19226 gggcactccagcaagtgtccctgatctttcagcgactcgacacaatcaccaaacatctct 19285
Query: 226 tgcacccctctgaacttgaagcccagc 252
||||||||| |||||||||| ||||||
Sbjct: 19286 tgcacccctttgaacttgaaacccagc 19312
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 418 tcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttccg 477
||||||||||| ||||||| |||||| || ||||||||||| || || |||||||| ||
Sbjct: 19600 tcgtacaccagaatgtggcagctcgccacatcgtcgatgtgaacatatcccattctccca 19659
Query: 478 tacgagctgaa 488
|||||| ||||
Sbjct: 19660 tacgagatgaa 19670
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 772 gtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttcagagta 831
||||| || ||||||||||| || || ||||||||||| ||| ||||||| |||||||||
Sbjct: 20204 gtaagaacaacccttttcagaaatggattcttcttgcaagatttcagcacattcagagta 20263
Query: 832 cc 833
||
Sbjct: 20264 cc 20265
Score = 52.0 bits (26), Expect = 7e-004
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 1035 tgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagcca 1094
|||||| || ||||| |||| ||||||||| || | ||| || |||| ||||| |||||
Sbjct: 20681 tgggtctctcacagttcctatcacatgatagcccgcctcaagaagcctcttgatgagcca 20740
Query: 1095 agaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||| || |||||||| || || ||||| || || |||||||||
Sbjct: 20741 agaggcgacgaagcctgaagcaccagttacacacactttgcccttg 20786
>gb|AACV01020329.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020329, whole
genome shotgun sequence
Length = 22170
Score = 97.6 bits (49), Expect = 1e-017
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 553 aaactgggcccgatcacgaacgacgggaggacagtcacaaggtcgatgccgttctccttg 612
||||||||||| ||||| || || || || ||||| |||||||| ||| ||||||||||
Sbjct: 5153 aaactgggcccaatcacaaatgatggaagaacagttacaaggtcaatgttgttctccttg 5212
Query: 613 gcgaactcccacgccgctttctctgcaaataccttggctagggcataccatag 665
|| |||||||| ||||||||||||||| ||| ||| || ||||||||||||||
Sbjct: 5213 gcaaactcccatgccgctttctctgcagatatctttgccagggcataccatag 5265
Score = 79.8 bits (40), Expect = 3e-012
Identities = 106/128 (82%)
Strand = Plus / Plus
Query: 886 aggacgggggatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctc 945
||||| || |||||||||||||| || || || || |||||||| || ||| ||||||
Sbjct: 5690 aggacaggcgatgcagtgtggaagacgccttcgcaagccatcacagcatcgtcaaagctc 5749
Query: 946 ccttcttccaacagatcagctcgcacgatttgcagcctctctttagcgccaggtaatttc 1005
|||||||||| ||||||||||| ||| | |||||||||||| || || | |||||| ||
Sbjct: 5750 ccttcttccatcagatcagctctcacaagttgcagcctctcctttgcacttggtaatctc 5809
Query: 1006 caaaggtg 1013
||||||||
Sbjct: 5810 caaaggtg 5817
Score = 69.9 bits (35), Expect = 3e-009
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 166 gggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaacatctcc 225
||||||||||||| ||||||||| ||||| ||||||| || || || | ||||||||
Sbjct: 4487 gggcactccagcaagtgtccctgatctttcagcgactcgacacaatcaccaaacatctct 4546
Query: 226 tgcacccctctgaacttgaagcccagc 252
||||||||| |||||||||| ||||||
Sbjct: 4547 tgcacccctttgaacttgaaacccagc 4573
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 418 tcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttccg 477
||||||||||| ||||||| |||||| || ||||||||||| || || |||||||| ||
Sbjct: 4861 tcgtacaccagaatgtggcagctcgccacatcgtcgatgtgaacatatcccattctccca 4920
Query: 478 tacgagctgaa 488
|||||| ||||
Sbjct: 4921 tacgagatgaa 4931
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 772 gtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttcagagta 831
||||| || ||||||||||| || || ||||||||||| ||| ||||||| |||||||||
Sbjct: 5465 gtaagaacaacccttttcagaaatggattcttcttgcaagatttcagcacattcagagta 5524
Query: 832 cc 833
||
Sbjct: 5525 cc 5526
Score = 52.0 bits (26), Expect = 7e-004
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 1035 tgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagcca 1094
|||||| || ||||| |||| ||||||||| || | ||| || |||| ||||| |||||
Sbjct: 5942 tgggtctctcacagttcctatcacatgatagcccgcctcaagaagcctcttgatgagcca 6001
Query: 1095 agaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||| || |||||||| || || ||||| || || |||||||||
Sbjct: 6002 agaggcgacgaagcctgaagcaccagttacacacactttgcccttg 6047
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 97.6 bits (49), Expect = 1e-017
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 553 aaactgggcccgatcacgaacgacgggaggacagtcacaaggtcgatgccgttctccttg 612
||||||||||| ||||| || || || || ||||| |||||||| ||| ||||||||||
Sbjct: 8353005 aaactgggcccaatcacaaatgatggaagaacagttacaaggtcaatgttgttctccttg 8353064
Query: 613 gcgaactcccacgccgctttctctgcaaataccttggctagggcataccatag 665
|| |||||||| ||||||||||||||| ||| ||| || ||||||||||||||
Sbjct: 8353065 gcaaactcccatgccgctttctctgcagatatctttgccagggcataccatag 8353117
Score = 79.8 bits (40), Expect = 3e-012
Identities = 106/128 (82%)
Strand = Plus / Plus
Query: 886 aggacgggggatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctc 945
||||| || |||||||||||||| || || || || |||||||| || ||| ||||||
Sbjct: 8353542 aggacaggcgatgcagtgtggaagacgccttcgcaagccatcacagcatcgtcaaagctc 8353601
Query: 946 ccttcttccaacagatcagctcgcacgatttgcagcctctctttagcgccaggtaatttc 1005
|||||||||| ||||||||||| ||| | |||||||||||| || || | |||||| ||
Sbjct: 8353602 ccttcttccatcagatcagctctcacaagttgcagcctctcctttgcacttggtaatctc 8353661
Query: 1006 caaaggtg 1013
||||||||
Sbjct: 8353662 caaaggtg 8353669
Score = 69.9 bits (35), Expect = 3e-009
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 166 gggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaacatctcc 225
||||||||||||| ||||||||| ||||| ||||||| || || || | ||||||||
Sbjct: 8352339 gggcactccagcaagtgtccctgatctttcagcgactcgacacaatcaccaaacatctct 8352398
Query: 226 tgcacccctctgaacttgaagcccagc 252
||||||||| |||||||||| ||||||
Sbjct: 8352399 tgcacccctttgaacttgaaacccagc 8352425
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 418 tcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttccg 477
||||||||||| ||||||| |||||| || ||||||||||| || || |||||||| ||
Sbjct: 8352713 tcgtacaccagaatgtggcagctcgccacatcgtcgatgtgaacatatcccattctccca 8352772
Query: 478 tacgagctgaa 488
|||||| ||||
Sbjct: 8352773 tacgagatgaa 8352783
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 772 gtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttcagagta 831
||||| || ||||||||||| || || ||||||||||| ||| ||||||| |||||||||
Sbjct: 8353317 gtaagaacaacccttttcagaaatggattcttcttgcaagatttcagcacattcagagta 8353376
Query: 832 cc 833
||
Sbjct: 8353377 cc 8353378
Score = 52.0 bits (26), Expect = 7e-004
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 1035 tgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagcca 1094
|||||| || ||||| |||| ||||||||| || | ||| || |||| ||||| |||||
Sbjct: 8353794 tgggtctctcacagttcctatcacatgatagcccgcctcaagaagcctcttgatgagcca 8353853
Query: 1095 agaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||| || |||||||| || || ||||| || || |||||||||
Sbjct: 8353854 agaggcgacgaagcctgaagcaccagttacacacactttgcccttg 8353899
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 97.6 bits (49), Expect = 1e-017
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 553 aaactgggcccgatcacgaacgacgggaggacagtcacaaggtcgatgccgttctccttg 612
||||||||||| ||||| || || || || ||||| |||||||| ||| ||||||||||
Sbjct: 17826816 aaactgggcccaatcacaaatgatggaagaacagttacaaggtcaatgttgttctccttg 17826875
Query: 613 gcgaactcccacgccgctttctctgcaaataccttggctagggcataccatag 665
|| |||||||| ||||||||||||||| ||| ||| || ||||||||||||||
Sbjct: 17826876 gcaaactcccatgccgctttctctgcagatatctttgccagggcataccatag 17826928
Score = 79.8 bits (40), Expect = 3e-012
Identities = 106/128 (82%)
Strand = Plus / Plus
Query: 886 aggacgggggatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctc 945
||||| || |||||||||||||| || || || || |||||||| || ||| ||||||
Sbjct: 17827353 aggacaggcgatgcagtgtggaagacgccttcgcaagccatcacagcatcgtcaaagctc 17827412
Query: 946 ccttcttccaacagatcagctcgcacgatttgcagcctctctttagcgccaggtaatttc 1005
|||||||||| ||||||||||| ||| | |||||||||||| || || | |||||| ||
Sbjct: 17827413 ccttcttccatcagatcagctctcacaagttgcagcctctcctttgcacttggtaatctc 17827472
Query: 1006 caaaggtg 1013
||||||||
Sbjct: 17827473 caaaggtg 17827480
Score = 69.9 bits (35), Expect = 3e-009
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 166 gggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaacatctcc 225
||||||||||||| ||||||||| ||||| ||||||| || || || | ||||||||
Sbjct: 17826150 gggcactccagcaagtgtccctgatctttcagcgactcgacacaatcaccaaacatctct 17826209
Query: 226 tgcacccctctgaacttgaagcccagc 252
||||||||| |||||||||| ||||||
Sbjct: 17826210 tgcacccctttgaacttgaaacccagc 17826236
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 418 tcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttccg 477
||||||||||| ||||||| |||||| || ||||||||||| || || |||||||| ||
Sbjct: 17826524 tcgtacaccagaatgtggcagctcgccacatcgtcgatgtgaacatatcccattctccca 17826583
Query: 478 tacgagctgaa 488
|||||| ||||
Sbjct: 17826584 tacgagatgaa 17826594
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 772 gtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttcagagta 831
||||| || ||||||||||| || || ||||||||||| ||| ||||||| |||||||||
Sbjct: 17827128 gtaagaacaacccttttcagaaatggattcttcttgcaagatttcagcacattcagagta 17827187
Query: 832 cc 833
||
Sbjct: 17827188 cc 17827189
Score = 52.0 bits (26), Expect = 7e-004
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 1035 tgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagcca 1094
|||||| || ||||| |||| ||||||||| || | ||| || |||| ||||| |||||
Sbjct: 17827605 tgggtctctcacagttcctatcacatgatagcccgcctcaagaagcctcttgatgagcca 17827664
Query: 1095 agaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||| || |||||||| || || ||||| || || |||||||||
Sbjct: 17827665 agaggcgacgaagcctgaagcaccagttacacacactttgcccttg 17827710
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 97.6 bits (49), Expect = 1e-017
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 553 aaactgggcccgatcacgaacgacgggaggacagtcacaaggtcgatgccgttctccttg 612
||||||||||| ||||| || || || || ||||| |||||||| ||| ||||||||||
Sbjct: 18824379 aaactgggcccaatcacaaatgatggaagaacagttacaaggtcaatgttgttctccttg 18824438
Query: 613 gcgaactcccacgccgctttctctgcaaataccttggctagggcataccatag 665
|| |||||||| ||||||||||||||| ||| ||| || ||||||||||||||
Sbjct: 18824439 gcaaactcccatgccgctttctctgcagatatctttgccagggcataccatag 18824491
Score = 79.8 bits (40), Expect = 3e-012
Identities = 106/128 (82%)
Strand = Plus / Plus
Query: 886 aggacgggggatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctc 945
||||| || |||||||||||||| || || || || |||||||| || ||| ||||||
Sbjct: 18824916 aggacaggcgatgcagtgtggaagacgccttcgcaagccatcacagcatcgtcaaagctc 18824975
Query: 946 ccttcttccaacagatcagctcgcacgatttgcagcctctctttagcgccaggtaatttc 1005
|||||||||| ||||||||||| ||| | |||||||||||| || || | |||||| ||
Sbjct: 18824976 ccttcttccatcagatcagctctcacaagttgcagcctctcctttgcacttggtaatctc 18825035
Query: 1006 caaaggtg 1013
||||||||
Sbjct: 18825036 caaaggtg 18825043
Score = 69.9 bits (35), Expect = 3e-009
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 166 gggcactccagcaggtgtccctggtctttgagcgactgtacgcagtcgtcgaacatctcc 225
||||||||||||| ||||||||| ||||| ||||||| || || || | ||||||||
Sbjct: 18823713 gggcactccagcaagtgtccctgatctttcagcgactcgacacaatcaccaaacatctct 18823772
Query: 226 tgcacccctctgaacttgaagcccagc 252
||||||||| |||||||||| ||||||
Sbjct: 18823773 tgcacccctttgaacttgaaacccagc 18823799
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 418 tcgtacaccaggatgtggctgctcgcaacgtcgtcgatgtggacgtaccccattcttccg 477
||||||||||| ||||||| |||||| || ||||||||||| || || |||||||| ||
Sbjct: 18824087 tcgtacaccagaatgtggcagctcgccacatcgtcgatgtgaacatatcccattctccca 18824146
Query: 478 tacgagctgaa 488
|||||| ||||
Sbjct: 18824147 tacgagatgaa 18824157
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 772 gtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttcagagta 831
||||| || ||||||||||| || || ||||||||||| ||| ||||||| |||||||||
Sbjct: 18824691 gtaagaacaacccttttcagaaatggattcttcttgcaagatttcagcacattcagagta 18824750
Query: 832 cc 833
||
Sbjct: 18824751 cc 18824752
Score = 52.0 bits (26), Expect = 7e-004
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 1035 tgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagcca 1094
|||||| || ||||| |||| ||||||||| || | ||| || |||| ||||| |||||
Sbjct: 18825168 tgggtctctcacagttcctatcacatgatagcccgcctcaagaagcctcttgatgagcca 18825227
Query: 1095 agaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||| || |||||||| || || ||||| || || |||||||||
Sbjct: 18825228 agaggcgacgaagcctgaagcaccagttacacacactttgcccttg 18825273
>dbj|AP003903.2| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1047_H11,
*** SEQUENCING IN PROGRESS ***
Length = 123495
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctctgcaa 640
|||| |||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 87603 acagccacaaggtcgatgccgttctccttggcgaactcccaggctgccttctctgcaa 87660
Score = 79.8 bits (40), Expect = 3e-012
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||||||| |||||| || |||||
Sbjct: 87238 gtacctcccggctgcacggggtgtctcgtagagcaggatgtggcagctcgcgacatcgtc 87297
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||||||||| || ||||||
Sbjct: 87298 gatgtggacgtaccccatcctcccgtac 87325
Score = 63.9 bits (32), Expect = 2e-007
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||| ||| |||||| ||||||||
Sbjct: 94434 gtacctcccggctgcacggggtgtctcgtagagcaggatgcggcagctcgcgacgtcgtc 94375
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||| |||| || ||||||
Sbjct: 94374 catgtggacgtacaccatcctcccgtac 94347
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||| ||||| ||||||||||| |||||||| || || |||||||||||||||
Sbjct: 88132 gatgcagtatggaagacaccctcacaagccatcacagcatcatcaaagctcccttcttcc 88191
Query: 955 aacagatcagctc 967
|| || |||||||
Sbjct: 88192 aagaggtcagctc 88204
Score = 56.0 bits (28), Expect = 4e-005
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 1033 cctgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagc 1092
|||||||| ||||| ||||| | |||||||| || ||||| || || || || | ||||
Sbjct: 88375 cctgggtctctgactgtcccaagaacatgataccctgactcaagaagtcgcttcacaagc 88434
Query: 1093 caagaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||||||||| |||| || ||||| || || || ||||||||||||
Sbjct: 88435 caagaggcaacatagccagaagccccagtgacacacaccttgcccttg 88482
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 766 gaagacgtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttc 825
||||| || ||||| ||||| || ||| | |||||||||||||| |||||||| ||||||
Sbjct: 87869 gaagaggtgaggactaccctcttgagggatgggttcttcttgcatgatctcagaacgttc 87928
Query: 826 agagtaccgtt 836
|| || |||||
Sbjct: 87929 agggtgccgtt 87939
Score = 46.1 bits (23), Expect = 0.042
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 210 gtcgtcgaacatctcctgcacccctctgaacttgaagcccagc 252
||||||||||||||||| ||| |||||||||| | |||||||
Sbjct: 86948 gtcgtcgaacatctcctccacatctctgaacttcatgcccagc 86990
>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0686C03
Length = 164529
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctctgcaa 640
|||| |||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 71572 acagccacaaggtcgatgccgttctccttggcgaactcccaggctgccttctctgcaa 71629
Score = 79.8 bits (40), Expect = 3e-012
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||||||| |||||| || |||||
Sbjct: 71207 gtacctcccggctgcacggggtgtctcgtagagcaggatgtggcagctcgcgacatcgtc 71266
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||||||||| || ||||||
Sbjct: 71267 gatgtggacgtaccccatcctcccgtac 71294
Score = 63.9 bits (32), Expect = 2e-007
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||| ||| |||||| ||||||||
Sbjct: 78403 gtacctcccggctgcacggggtgtctcgtagagcaggatgcggcagctcgcgacgtcgtc 78344
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||| |||| || ||||||
Sbjct: 78343 catgtggacgtacaccatcctcccgtac 78316
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||| ||||| ||||||||||| |||||||| || || |||||||||||||||
Sbjct: 72101 gatgcagtatggaagacaccctcacaagccatcacagcatcatcaaagctcccttcttcc 72160
Query: 955 aacagatcagctc 967
|| || |||||||
Sbjct: 72161 aagaggtcagctc 72173
Score = 56.0 bits (28), Expect = 4e-005
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 1033 cctgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagc 1092
|||||||| ||||| ||||| | |||||||| || ||||| || || || || | ||||
Sbjct: 72344 cctgggtctctgactgtcccaagaacatgataccctgactcaagaagtcgcttcacaagc 72403
Query: 1093 caagaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||||||||| |||| || ||||| || || || ||||||||||||
Sbjct: 72404 caagaggcaacatagccagaagccccagtgacacacaccttgcccttg 72451
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 766 gaagacgtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttc 825
||||| || ||||| ||||| || ||| | |||||||||||||| |||||||| ||||||
Sbjct: 71838 gaagaggtgaggactaccctcttgagggatgggttcttcttgcatgatctcagaacgttc 71897
Query: 826 agagtaccgtt 836
|| || |||||
Sbjct: 71898 agggtgccgtt 71908
Score = 46.1 bits (23), Expect = 0.042
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 210 gtcgtcgaacatctcctgcacccctctgaacttgaagcccagc 252
||||||||||||||||| ||| |||||||||| | |||||||
Sbjct: 70917 gtcgtcgaacatctcctccacatctctgaacttcatgcccagc 70959
>gb|AACV01018850.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018850, whole
genome shotgun sequence
Length = 19818
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctctgcaa 640
|||| |||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 9021 acagccacaaggtcgatgccgttctccttggcgaactcccaggctgccttctctgcaa 9078
Score = 79.8 bits (40), Expect = 3e-012
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||||||| |||||| || |||||
Sbjct: 8656 gtacctcccggctgcacggggtgtctcgtagagcaggatgtggcagctcgcgacatcgtc 8715
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||||||||| || ||||||
Sbjct: 8716 gatgtggacgtaccccatcctcccgtac 8743
Score = 63.9 bits (32), Expect = 2e-007
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||| ||| |||||| ||||||||
Sbjct: 15857 gtacctcccggctgcacggggtgtctcgtagagcaggatgcggcagctcgcgacgtcgtc 15798
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||| |||| || ||||||
Sbjct: 15797 catgtggacgtacaccatcctcccgtac 15770
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||| ||||| ||||||||||| |||||||| || || |||||||||||||||
Sbjct: 9550 gatgcagtatggaagacaccctcacaagccatcacagcatcatcaaagctcccttcttcc 9609
Query: 955 aacagatcagctc 967
|| || |||||||
Sbjct: 9610 aagaggtcagctc 9622
Score = 56.0 bits (28), Expect = 4e-005
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 1033 cctgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagc 1092
|||||||| ||||| ||||| | |||||||| || ||||| || || || || | ||||
Sbjct: 9793 cctgggtctctgactgtcccaagaacatgataccctgactcaagaagtcgcttcacaagc 9852
Query: 1093 caagaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||||||||| |||| || ||||| || || || ||||||||||||
Sbjct: 9853 caagaggcaacatagccagaagccccagtgacacacaccttgcccttg 9900
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 766 gaagacgtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttc 825
||||| || ||||| ||||| || ||| | |||||||||||||| |||||||| ||||||
Sbjct: 9287 gaagaggtgaggactaccctcttgagggatgggttcttcttgcatgatctcagaacgttc 9346
Query: 826 agagtaccgtt 836
|| || |||||
Sbjct: 9347 agggtgccgtt 9357
Score = 46.1 bits (23), Expect = 0.042
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 210 gtcgtcgaacatctcctgcacccctctgaacttgaagcccagc 252
||||||||||||||||| ||| |||||||||| | |||||||
Sbjct: 8366 gtcgtcgaacatctcctccacatctctgaacttcatgcccagc 8408
>ref|XM_483338.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1086
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctctgcaa 640
|||| |||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 662 acagccacaaggtcgatgccgttctccttggcgaactcccaggctgccttctctgcaa 605
Score = 81.8 bits (41), Expect = 8e-013
Identities = 107/129 (82%)
Strand = Plus / Minus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||||||| |||||| || |||||
Sbjct: 852 gtacctcccggctgcacggggtgtctcgtagagcaggatgtggcagctcgcgacatcgtc 793
Query: 453 gatgtggacgtaccccattcttccgtacgagctgaaccttgccgtgtcgccttggaatag 512
|||||||||||||||||| || |||||| | ||||| | | || || |||||||||||
Sbjct: 792 gatgtggacgtaccccatcctcccgtacatggtgaacttcgttgtctcaccttggaatag 733
Query: 513 gcctaggac 521
||| |||||
Sbjct: 732 gccgaggac 724
Score = 75.8 bits (38), Expect = 5e-011
Identities = 194/246 (78%)
Strand = Plus / Minus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||| ||||| ||||||||||| |||||||| || || |||||||||||||||
Sbjct: 260 gatgcagtatggaagacaccctcacaagccatcacagcatcatcaaagctcccttcttcc 201
Query: 955 aacagatcagctcgcacgatttgcagcctctctttagcgccaggtaatttccaaaggtgg 1014
|| || ||||||| ||| | | |||||| || || || || | ||| ||||| |||||
Sbjct: 200 aagaggtcagctctcacaagctccagcctttcctttgcacctgttaaattccacaggtgc 141
Query: 1015 gctgtcttttggtgatttcctgggtccctgacagtccctaccacatgatatccagactcg 1074
|| || | |||||| |||||||| ||||| ||||| | |||||||| || |||||
Sbjct: 140 cctactttcttgtgattgcctgggtctctgactgtcccaagaacatgataccctgactca 81
Query: 1075 aggagccgtttgataagccaagaggcaacaaagcctgaggccccggttacgcataccttg 1134
|| || || || | |||||||||||||||| |||| || ||||| || || || ||||||
Sbjct: 80 agaagtcgcttcacaagccaagaggcaacatagccagaagccccagtgacacacaccttg 21
Query: 1135 cccttg 1140
||||||
Sbjct: 20 cccttg 15
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 766 gaagacgtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttc 825
||||| || ||||| ||||| || ||| | |||||||||||||| |||||||| ||||||
Sbjct: 479 gaagaggtgaggactaccctcttgagggatgggttcttcttgcatgatctcagaacgttc 420
Query: 826 agagtaccgtt 836
|| || |||||
Sbjct: 419 agggtgccgtt 409
Score = 46.1 bits (23), Expect = 0.042
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 210 gtcgtcgaacatctcctgcacccctctgaacttgaagcccagc 252
||||||||||||||||| ||| |||||||||| | |||||||
Sbjct: 1035 gtcgtcgaacatctcctccacatctctgaacttcatgcccagc 993
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctctgcaa 640
|||| |||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 25346794 acagccacaaggtcgatgccgttctccttggcgaactcccaggctgccttctctgcaa 25346851
Score = 79.8 bits (40), Expect = 3e-012
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||||||| |||||| || |||||
Sbjct: 25346429 gtacctcccggctgcacggggtgtctcgtagagcaggatgtggcagctcgcgacatcgtc 25346488
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||||||||| || ||||||
Sbjct: 25346489 gatgtggacgtaccccatcctcccgtac 25346516
Score = 63.9 bits (32), Expect = 2e-007
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||| ||| |||||| ||||||||
Sbjct: 25353625 gtacctcccggctgcacggggtgtctcgtagagcaggatgcggcagctcgcgacgtcgtc 25353566
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||| |||| || ||||||
Sbjct: 25353565 catgtggacgtacaccatcctcccgtac 25353538
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||| ||||| ||||||||||| |||||||| || || |||||||||||||||
Sbjct: 25347323 gatgcagtatggaagacaccctcacaagccatcacagcatcatcaaagctcccttcttcc 25347382
Query: 955 aacagatcagctc 967
|| || |||||||
Sbjct: 25347383 aagaggtcagctc 25347395
Score = 56.0 bits (28), Expect = 4e-005
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 1033 cctgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagc 1092
|||||||| ||||| ||||| | |||||||| || ||||| || || || || | ||||
Sbjct: 25347566 cctgggtctctgactgtcccaagaacatgataccctgactcaagaagtcgcttcacaagc 25347625
Query: 1093 caagaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||||||||| |||| || ||||| || || || ||||||||||||
Sbjct: 25347626 caagaggcaacatagccagaagccccagtgacacacaccttgcccttg 25347673
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 766 gaagacgtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttc 825
||||| || ||||| ||||| || ||| | |||||||||||||| |||||||| ||||||
Sbjct: 25347060 gaagaggtgaggactaccctcttgagggatgggttcttcttgcatgatctcagaacgttc 25347119
Query: 826 agagtaccgtt 836
|| || |||||
Sbjct: 25347120 agggtgccgtt 25347130
Score = 46.1 bits (23), Expect = 0.042
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 210 gtcgtcgaacatctcctgcacccctctgaacttgaagcccagc 252
||||||||||||||||| ||| |||||||||| | |||||||
Sbjct: 25346139 gtcgtcgaacatctcctccacatctctgaacttcatgcccagc 25346181
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctctgcaa 640
|||| |||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 16820855 acagccacaaggtcgatgccgttctccttggcgaactcccaggctgccttctctgcaa 16820912
Score = 79.8 bits (40), Expect = 3e-012
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||||||| |||||| || |||||
Sbjct: 16820490 gtacctcccggctgcacggggtgtctcgtagagcaggatgtggcagctcgcgacatcgtc 16820549
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||||||||| || ||||||
Sbjct: 16820550 gatgtggacgtaccccatcctcccgtac 16820577
Score = 63.9 bits (32), Expect = 2e-007
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||| ||| |||||| ||||||||
Sbjct: 16827691 gtacctcccggctgcacggggtgtctcgtagagcaggatgcggcagctcgcgacgtcgtc 16827632
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||| |||| || ||||||
Sbjct: 16827631 catgtggacgtacaccatcctcccgtac 16827604
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||| ||||| ||||||||||| |||||||| || || |||||||||||||||
Sbjct: 16821384 gatgcagtatggaagacaccctcacaagccatcacagcatcatcaaagctcccttcttcc 16821443
Query: 955 aacagatcagctc 967
|| || |||||||
Sbjct: 16821444 aagaggtcagctc 16821456
Score = 56.0 bits (28), Expect = 4e-005
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 1033 cctgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagc 1092
|||||||| ||||| ||||| | |||||||| || ||||| || || || || | ||||
Sbjct: 16821627 cctgggtctctgactgtcccaagaacatgataccctgactcaagaagtcgcttcacaagc 16821686
Query: 1093 caagaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||||||||| |||| || ||||| || || || ||||||||||||
Sbjct: 16821687 caagaggcaacatagccagaagccccagtgacacacaccttgcccttg 16821734
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 766 gaagacgtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttc 825
||||| || ||||| ||||| || ||| | |||||||||||||| |||||||| ||||||
Sbjct: 16821121 gaagaggtgaggactaccctcttgagggatgggttcttcttgcatgatctcagaacgttc 16821180
Query: 826 agagtaccgtt 836
|| || |||||
Sbjct: 16821181 agggtgccgtt 16821191
Score = 46.1 bits (23), Expect = 0.042
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 210 gtcgtcgaacatctcctgcacccctctgaacttgaagcccagc 252
||||||||||||||||| ||| |||||||||| | |||||||
Sbjct: 16820200 gtcgtcgaacatctcctccacatctctgaacttcatgcccagc 16820242
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctctgcaa 640
|||| |||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 24422861 acagccacaaggtcgatgccgttctccttggcgaactcccaggctgccttctctgcaa 24422918
Score = 79.8 bits (40), Expect = 3e-012
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||||||| |||||| || |||||
Sbjct: 24422496 gtacctcccggctgcacggggtgtctcgtagagcaggatgtggcagctcgcgacatcgtc 24422555
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||||||||| || ||||||
Sbjct: 24422556 gatgtggacgtaccccatcctcccgtac 24422583
Score = 63.9 bits (32), Expect = 2e-007
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||| ||| |||||| ||||||||
Sbjct: 24429697 gtacctcccggctgcacggggtgtctcgtagagcaggatgcggcagctcgcgacgtcgtc 24429638
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||| |||| || ||||||
Sbjct: 24429637 catgtggacgtacaccatcctcccgtac 24429610
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||| ||||| ||||||||||| |||||||| || || |||||||||||||||
Sbjct: 24423390 gatgcagtatggaagacaccctcacaagccatcacagcatcatcaaagctcccttcttcc 24423449
Query: 955 aacagatcagctc 967
|| || |||||||
Sbjct: 24423450 aagaggtcagctc 24423462
Score = 56.0 bits (28), Expect = 4e-005
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 1033 cctgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagc 1092
|||||||| ||||| ||||| | |||||||| || ||||| || || || || | ||||
Sbjct: 24423633 cctgggtctctgactgtcccaagaacatgataccctgactcaagaagtcgcttcacaagc 24423692
Query: 1093 caagaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||||||||| |||| || ||||| || || || ||||||||||||
Sbjct: 24423693 caagaggcaacatagccagaagccccagtgacacacaccttgcccttg 24423740
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 766 gaagacgtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttc 825
||||| || ||||| ||||| || ||| | |||||||||||||| |||||||| ||||||
Sbjct: 24423127 gaagaggtgaggactaccctcttgagggatgggttcttcttgcatgatctcagaacgttc 24423186
Query: 826 agagtaccgtt 836
|| || |||||
Sbjct: 24423187 agggtgccgtt 24423197
Score = 46.1 bits (23), Expect = 0.042
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 210 gtcgtcgaacatctcctgcacccctctgaacttgaagcccagc 252
||||||||||||||||| ||| |||||||||| | |||||||
Sbjct: 24422206 gtcgtcgaacatctcctccacatctctgaacttcatgcccagc 24422248
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 583 acagtcacaaggtcgatgccgttctccttggcgaactcccacgccgctttctctgcaa 640
|||| |||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 25584881 acagccacaaggtcgatgccgttctccttggcgaactcccaggctgccttctctgcaa 25584938
Score = 79.8 bits (40), Expect = 3e-012
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||||||| |||||| || |||||
Sbjct: 25584516 gtacctcccggctgcacggggtgtctcgtagagcaggatgtggcagctcgcgacatcgtc 25584575
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||||||||| || ||||||
Sbjct: 25584576 gatgtggacgtaccccatcctcccgtac 25584603
Score = 63.9 bits (32), Expect = 2e-007
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||| ||| |||||| ||||||||
Sbjct: 25591712 gtacctcccggctgcacggggtgtctcgtagagcaggatgcggcagctcgcgacgtcgtc 25591653
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||| |||| || ||||||
Sbjct: 25591652 catgtggacgtacaccatcctcccgtac 25591625
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||| ||||| ||||||||||| |||||||| || || |||||||||||||||
Sbjct: 25585410 gatgcagtatggaagacaccctcacaagccatcacagcatcatcaaagctcccttcttcc 25585469
Query: 955 aacagatcagctc 967
|| || |||||||
Sbjct: 25585470 aagaggtcagctc 25585482
Score = 56.0 bits (28), Expect = 4e-005
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 1033 cctgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagc 1092
|||||||| ||||| ||||| | |||||||| || ||||| || || || || | ||||
Sbjct: 25585653 cctgggtctctgactgtcccaagaacatgataccctgactcaagaagtcgcttcacaagc 25585712
Query: 1093 caagaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||||||||| |||| || ||||| || || || ||||||||||||
Sbjct: 25585713 caagaggcaacatagccagaagccccagtgacacacaccttgcccttg 25585760
Score = 54.0 bits (27), Expect = 2e-004
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 766 gaagacgtaaggacgacccttttcaggaacgggttcttcttgcacgatctcagcacgttc 825
||||| || ||||| ||||| || ||| | |||||||||||||| |||||||| ||||||
Sbjct: 25585147 gaagaggtgaggactaccctcttgagggatgggttcttcttgcatgatctcagaacgttc 25585206
Query: 826 agagtaccgtt 836
|| || |||||
Sbjct: 25585207 agggtgccgtt 25585217
Score = 46.1 bits (23), Expect = 0.042
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 210 gtcgtcgaacatctcctgcacccctctgaacttgaagcccagc 252
||||||||||||||||| ||| |||||||||| | |||||||
Sbjct: 25584226 gtcgtcgaacatctcctccacatctctgaacttcatgcccagc 25584268
>ref|NM_189001.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 333
Score = 63.9 bits (32), Expect = 2e-007
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 393 gtacctcccggcggcctggggggcctcgtacaccaggatgtggctgctcgcaacgtcgtc 452
|||||||||||| || |||| | |||||| | ||||||| ||| |||||| ||||||||
Sbjct: 162 gtacctcccggctgcacggggtgtctcgtagagcaggatgcggcagctcgcgacgtcgtc 103
Query: 453 gatgtggacgtaccccattcttccgtac 480
|||||||||||| |||| || ||||||
Sbjct: 102 catgtggacgtacaccatcctcccgtac 75
>gb|AQ867193.1|AQ867193 nbeb0031C01f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0031C01f, DNA sequence
Length = 605
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 895 gatgcagtgtggaatacaccctcacaggccatcacggcgctgtcgaagctcccttcttcc 954
|||||||| ||||| ||||||||||| |||||||| || || |||||||||||||||
Sbjct: 124 gatgcagtatggaagacaccctcacaagccatcacagcatcatcaaagctcccttcttcc 183
Query: 955 aacagatcagctc 967
|| || |||||||
Sbjct: 184 aagaggtcagctc 196
Score = 56.0 bits (28), Expect = 4e-005
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 1033 cctgggtccctgacagtccctaccacatgatatccagactcgaggagccgtttgataagc 1092
|||||||| ||||| ||||| | |||||||| || ||||| || || || || | ||||
Sbjct: 367 cctgggtctctgactgtcccaagaacatgataccctgactcaagaagtcgcttcacaagc 426
Query: 1093 caagaggcaacaaagcctgaggccccggttacgcataccttgcccttg 1140
|||||||||||| |||| || ||||| || || || ||||||||||||
Sbjct: 427 caagaggcaacatagccagaagccccagtgacacacaccttgcccttg 474
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,036,308
Number of Sequences: 438736
Number of extensions: 1036308
Number of successful extensions: 4917
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4702
Number of HSP's gapped (non-prelim): 201
length of query: 1157
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1136
effective length of database: 2,791,206,460
effective search space: 3170810538560
effective search space used: 3170810538560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)