BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3183567.2.1
(681 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC099403.1| Oryza sativa (japonica cultivar-group) chrom... 412 e-112
gb|AC108757.1| Oryza sativa (japonica cultivar-group) chrom... 412 e-112
gb|AACV01020330.1| Oryza sativa (japonica cultivar-group) c... 412 e-112
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 412 e-112
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 412 e-112
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 412 e-112
gb|CB652613.1|CB652613 OSJNEc02N02.f OSJNEc Oryza sativa (j... 404 e-110
dbj|AK069564.1| Oryza sativa (japonica cultivar-group) cDNA... 404 e-110
dbj|AK103755.1| Oryza sativa (japonica cultivar-group) cDNA... 404 e-110
gb|CB680440.1|CB680440 OSJNEf05C13.r OSJNEf Oryza sativa (j... 379 e-102
gb|CB652614.1|CB652614 OSJNEc02N02.r OSJNEc Oryza sativa (j... 361 3e-097
gb|C72113.1|C72113 C72113 Rice panicle at flowering stage O... 123 1e-025
gb|CB000285.1|CB000285 S345U_A06 Rice cold stress germinati... 119 2e-024
emb|AL713939.6|CNS07YPL Oryza sativa chromosome 12, . BAC O... 107 8e-021
ref|NT_107160.1| Oryza sativa (japonica cultivar-group) 107 8e-021
gb|AACV01024221.1| Oryza sativa (japonica cultivar-group) c... 107 8e-021
gb|CH401273.1| Oryza sativa (japonica cultivar-group) chrom... 107 8e-021
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 107 8e-021
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 107 8e-021
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 107 8e-021
>gb|AC099403.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNBa0005C18, *** SEQUENCING IN PROGRESS ***, 5 ordered
pieces
Length = 145550
Score = 412 bits (208), Expect = e-112
Identities = 308/342 (90%)
Strand = Plus / Plus
Query: 309 ggaggggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggcc 368
|||||||||||| | |||||||||||||| || ||||||||||| |||||||| |||||
Sbjct: 33867 ggaggggttgaaggcggcctgctcggcgcagtcgcggttgtcgccggagtgctcgcggcc 33926
Query: 369 gacgcccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgac 428
||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||
Sbjct: 33927 gacgcccatgaggtcgaggtagtactggtagtgcgagatgatgacgttcatgtcgtcgat 33986
Query: 429 gtatcccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccagg 488
||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||
Sbjct: 33987 gtagcccttgccgcagatctggtcgccgtagagcacgttcatggtggcgccgaacccggg 34046
Query: 489 caggcgtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtg 548
||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 34047 gaggcgcttggcgagcgtgtcgttcttggtgggcttccagttgcccacgaacacgtcgtg 34106
Query: 549 cgccgacggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgc 608
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 34107 cgccgacggctgcttcttcttcatcggcgtcatccaccgccacatcgccgccatgaacgc 34166
Query: 609 cagcgtcgcgttctgctccaggtactctgggnggnggagcag 650
|| |||||||||||||||||||||||| ||| || |||||||
Sbjct: 34167 catcgtcgcgttctgctccaggtactccgggtggtggagcag 34208
>gb|AC108757.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNba0056P13, *** SEQUENCING IN PROGRESS ***, 9 ordered
pieces
Length = 173729
Score = 412 bits (208), Expect = e-112
Identities = 308/342 (90%)
Strand = Plus / Minus
Query: 309 ggaggggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggcc 368
|||||||||||| | |||||||||||||| || ||||||||||| |||||||| |||||
Sbjct: 53899 ggaggggttgaaggcggcctgctcggcgcagtcgcggttgtcgccggagtgctcgcggcc 53840
Query: 369 gacgcccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgac 428
||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||
Sbjct: 53839 gacgcccatgaggtcgaggtagtactggtagtgcgagatgatgacgttcatgtcgtcgat 53780
Query: 429 gtatcccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccagg 488
||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||
Sbjct: 53779 gtagcccttgccgcagatctggtcgccgtagagcacgttcatggtggcgccgaacccggg 53720
Query: 489 caggcgtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtg 548
||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 53719 gaggcgcttggcgagcgtgtcgttcttggtgggcttccagttgcccacgaacacgtcgtg 53660
Query: 549 cgccgacggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgc 608
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 53659 cgccgacggctgcttcttcttcatcggcgtcatccaccgccacatcgccgccatgaacgc 53600
Query: 609 cagcgtcgcgttctgctccaggtactctgggnggnggagcag 650
|| |||||||||||||||||||||||| ||| || |||||||
Sbjct: 53599 catcgtcgcgttctgctccaggtactccgggtggtggagcag 53558
>gb|AACV01020330.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020330, whole
genome shotgun sequence
Length = 20978
Score = 412 bits (208), Expect = e-112
Identities = 308/342 (90%)
Strand = Plus / Minus
Query: 309 ggaggggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggcc 368
|||||||||||| | |||||||||||||| || ||||||||||| |||||||| |||||
Sbjct: 16425 ggaggggttgaaggcggcctgctcggcgcagtcgcggttgtcgccggagtgctcgcggcc 16366
Query: 369 gacgcccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgac 428
||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||
Sbjct: 16365 gacgcccatgaggtcgaggtagtactggtagtgcgagatgatgacgttcatgtcgtcgat 16306
Query: 429 gtatcccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccagg 488
||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||
Sbjct: 16305 gtagcccttgccgcagatctggtcgccgtagagcacgttcatggtggcgccgaacccggg 16246
Query: 489 caggcgtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtg 548
||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 16245 gaggcgcttggcgagcgtgtcgttcttggtgggcttccagttgcccacgaacacgtcgtg 16186
Query: 549 cgccgacggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgc 608
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 16185 cgccgacggctgcttcttcttcatcggcgtcatccaccgccacatcgccgccatgaacgc 16126
Query: 609 cagcgtcgcgttctgctccaggtactctgggnggnggagcag 650
|| |||||||||||||||||||||||| ||| || |||||||
Sbjct: 16125 catcgtcgcgttctgctccaggtactccgggtggtggagcag 16084
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 412 bits (208), Expect = e-112
Identities = 308/342 (90%)
Strand = Plus / Minus
Query: 309 ggaggggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggcc 368
|||||||||||| | |||||||||||||| || ||||||||||| |||||||| |||||
Sbjct: 8386547 ggaggggttgaaggcggcctgctcggcgcagtcgcggttgtcgccggagtgctcgcggcc 8386488
Query: 369 gacgcccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgac 428
||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||
Sbjct: 8386487 gacgcccatgaggtcgaggtagtactggtagtgcgagatgatgacgttcatgtcgtcgat 8386428
Query: 429 gtatcccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccagg 488
||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||
Sbjct: 8386427 gtagcccttgccgcagatctggtcgccgtagagcacgttcatggtggcgccgaacccggg 8386368
Query: 489 caggcgtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtg 548
||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 8386367 gaggcgcttggcgagcgtgtcgttcttggtgggcttccagttgcccacgaacacgtcgtg 8386308
Query: 549 cgccgacggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgc 608
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 8386307 cgccgacggctgcttcttcttcatcggcgtcatccaccgccacatcgccgccatgaacgc 8386248
Query: 609 cagcgtcgcgttctgctccaggtactctgggnggnggagcag 650
|| |||||||||||||||||||||||| ||| || |||||||
Sbjct: 8386247 catcgtcgcgttctgctccaggtactccgggtggtggagcag 8386206
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 412 bits (208), Expect = e-112
Identities = 308/342 (90%)
Strand = Plus / Minus
Query: 309 ggaggggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggcc 368
|||||||||||| | |||||||||||||| || ||||||||||| |||||||| |||||
Sbjct: 17860358 ggaggggttgaaggcggcctgctcggcgcagtcgcggttgtcgccggagtgctcgcggcc 17860299
Query: 369 gacgcccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgac 428
||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||
Sbjct: 17860298 gacgcccatgaggtcgaggtagtactggtagtgcgagatgatgacgttcatgtcgtcgat 17860239
Query: 429 gtatcccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccagg 488
||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||
Sbjct: 17860238 gtagcccttgccgcagatctggtcgccgtagagcacgttcatggtggcgccgaacccggg 17860179
Query: 489 caggcgtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtg 548
||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 17860178 gaggcgcttggcgagcgtgtcgttcttggtgggcttccagttgcccacgaacacgtcgtg 17860119
Query: 549 cgccgacggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgc 608
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 17860118 cgccgacggctgcttcttcttcatcggcgtcatccaccgccacatcgccgccatgaacgc 17860059
Query: 609 cagcgtcgcgttctgctccaggtactctgggnggnggagcag 650
|| |||||||||||||||||||||||| ||| || |||||||
Sbjct: 17860058 catcgtcgcgttctgctccaggtactccgggtggtggagcag 17860017
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 412 bits (208), Expect = e-112
Identities = 308/342 (90%)
Strand = Plus / Minus
Query: 309 ggaggggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggcc 368
|||||||||||| | |||||||||||||| || ||||||||||| |||||||| |||||
Sbjct: 18858185 ggaggggttgaaggcggcctgctcggcgcagtcgcggttgtcgccggagtgctcgcggcc 18858126
Query: 369 gacgcccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgac 428
||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||
Sbjct: 18858125 gacgcccatgaggtcgaggtagtactggtagtgcgagatgatgacgttcatgtcgtcgat 18858066
Query: 429 gtatcccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccagg 488
||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||
Sbjct: 18858065 gtagcccttgccgcagatctggtcgccgtagagcacgttcatggtggcgccgaacccggg 18858006
Query: 489 caggcgtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtg 548
||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 18858005 gaggcgcttggcgagcgtgtcgttcttggtgggcttccagttgcccacgaacacgtcgtg 18857946
Query: 549 cgccgacggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgc 608
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 18857945 cgccgacggctgcttcttcttcatcggcgtcatccaccgccacatcgccgccatgaacgc 18857886
Query: 609 cagcgtcgcgttctgctccaggtactctgggnggnggagcag 650
|| |||||||||||||||||||||||| ||| || |||||||
Sbjct: 18857885 catcgtcgcgttctgctccaggtactccgggtggtggagcag 18857844
>gb|CB652613.1|CB652613 OSJNEc02N02.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02N02 5', mRNA sequence
Length = 808
Score = 404 bits (204), Expect = e-110
Identities = 307/342 (89%)
Strand = Plus / Minus
Query: 309 ggaggggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggcc 368
|||||||||||| | |||||||||||||| || ||||||||||| |||||||| |||||
Sbjct: 695 ggaggggttgaaggcggcctgctcggcgcagtcgcggttgtcgccggagtgctcgcggcc 636
Query: 369 gacgcccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgac 428
||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||
Sbjct: 635 gacgcccatgaggtcgaggtagtactggtagtgcgagatgatgacgttcatgtcgtcgat 576
Query: 429 gtatcccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccagg 488
||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||
Sbjct: 575 gtagcccttgccgcagatctggtcgccgtagagcacgttcatggtggcgccgaacccggg 516
Query: 489 caggcgtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtg 548
||||| ||| |||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 515 gaggcgcttggcgagcgtgtcgttcttggtgggcttccagttgcccccgaacacgtcgtg 456
Query: 549 cgccgacggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgc 608
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 455 cgccgacggctgcttcttcttcatcggcgtcatccaccgccacatcgccgccatgaacgc 396
Query: 609 cagcgtcgcgttctgctccaggtactctgggnggnggagcag 650
|| |||||||||||||||||||||||| ||| || |||||||
Sbjct: 395 catcgtcgcgttctgctccaggtactccgggtggtggagcag 354
>dbj|AK069564.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019G16, full
insert sequence
Length = 1455
Score = 404 bits (204), Expect = e-110
Identities = 307/342 (89%)
Strand = Plus / Minus
Query: 309 ggaggggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggcc 368
|||||||||||| | |||||||||||||| || ||||||||||| |||||||| |||||
Sbjct: 1053 ggaggggttgaaggcggcctgctcggcgcagtcgcggttgtcgccggagtgctcgcggcc 994
Query: 369 gacgcccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgac 428
||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||
Sbjct: 993 gacgcccatgaggtcgaggtagtactggtagtgcgagatgatgacgttcatgtcgtcgat 934
Query: 429 gtatcccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccagg 488
||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||
Sbjct: 933 gtagcccttgccgcagatctggtcgccgtagagcacgttcatggtggcgccgaacccggg 874
Query: 489 caggcgtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtg 548
||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 873 gaggcgcttggcgagcgtgtcgttcttggtgggcttccagttgcccacgaacacgtcgtg 814
Query: 549 cgccgacggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgc 608
|||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||
Sbjct: 813 cgccgacggctgcttcttcttcatcggcgtcacccaccgccacatcgccgccatgaacgc 754
Query: 609 cagcgtcgcgttctgctccaggtactctgggnggnggagcag 650
|| |||||||||||||||||||||||| ||| || |||||||
Sbjct: 753 catcgtcgcgttctgctccaggtactccgggtggtggagcag 712
>dbj|AK103755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033143D05, full
insert sequence
Length = 1649
Score = 404 bits (204), Expect = e-110
Identities = 307/342 (89%)
Strand = Plus / Minus
Query: 309 ggaggggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggcc 368
|||||||||||| | |||||||||||||| || ||||||||||| |||||||| |||||
Sbjct: 1270 ggaggggttgaaggcggcctgctcggcgcagtcgcggttgtcgccggagtgctcgcggcc 1211
Query: 369 gacgcccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgac 428
||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||
Sbjct: 1210 gacgcccatgaggtcgaggtagtactggtagtgcgagatgatgacgttcatgtcgtcgat 1151
Query: 429 gtatcccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccagg 488
||| ||||||||||||||| ||||||||| | | ||||||||||||||||||||| ||
Sbjct: 1150 gtagcccttgccgcagatctggtcgccgtagtgcacgttcatggtggcgccgaacccggg 1091
Query: 489 caggcgtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtg 548
||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1090 gaggcgcttggcgagcgtgtcgttcttggtgggcttccagttgcccacgaacacgtcgtg 1031
Query: 549 cgccgacggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgc 608
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 1030 cgccgacggctgcttcttcttcatcggcgtcatccaccgccacatcgccgccatgaacgc 971
Query: 609 cagcgtcgcgttctgctccaggtactctgggnggnggagcag 650
|| |||||||||||||||||||||||| ||| || |||||||
Sbjct: 970 catcgtcgcgttctgctccaggtactccgggtggtggagcag 929
>gb|CB680440.1|CB680440 OSJNEf05C13.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf05C13 3', mRNA sequence
Length = 713
Score = 379 bits (191), Expect = e-102
Identities = 293/327 (89%)
Strand = Plus / Plus
Query: 309 ggaggggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggcc 368
|||||||||||| | |||||||||||||| || ||||||||||| |||||||| |||||
Sbjct: 381 ggaggggttgaaggcggcctgctcggcgcagtcgcggttgtcgccggagtgctcgcggcc 440
Query: 369 gacgcccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgac 428
||||||||||||||| ||||| ||||||||||||||||| || || |||||| ||||||
Sbjct: 441 gacgcccatgaggtcgaggtagtactggtagtgcgagatgatgacattcatgtcgtcgat 500
Query: 429 gtatcccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccagg 488
||| ||||||||||||||| ||||||||||| | ||||||||||||||| ||||| ||
Sbjct: 501 gtagcccttgccgcagatctggtcgccgtagagcacgttcatggtggcgccaaacccggg 560
Query: 489 caggcgtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtg 548
||||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 561 gaggcgcttggcgagcgtgtcattcttggtgggcttccagttgcccacgaacacgtcgtg 620
Query: 549 cgccgacggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgc 608
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 cgccgacggctgcttcttcttcatcggcgtcatccaccgccacatcgccgccatgaacgc 680
Query: 609 cagcgtcgcgttctgctccaggtactc 635
|| ||||||||||||||||||||||||
Sbjct: 681 catcgtcgcgttctgctccaggtactc 707
>gb|CB652614.1|CB652614 OSJNEc02N02.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02N02 3', mRNA sequence
Length = 797
Score = 361 bits (182), Expect = 3e-097
Identities = 272/302 (90%)
Strand = Plus / Plus
Query: 309 ggaggggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggcc 368
|||||||||||| | |||||||||||||| || ||||||||||| |||||||| |||||
Sbjct: 492 ggaggggttgaaggcggcctgctcggcgcagtcgcggttgtcgccggagtgctcgcggcc 551
Query: 369 gacgcccatgaggtcaaggtaatactggtagtgcgagattataacgttcatggcgtcgac 428
||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||
Sbjct: 552 gacgcccatgaggtcgaggtagtactggtagtgcgagatgatgacgttcatgtcgtcgat 611
Query: 429 gtatcccttgccgcagatcgactcgccgtagagtatgttcatggtggcgccgaacccagg 488
||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||
Sbjct: 612 gtagcccttgccgcagatctggtcgccgtagagcacgttcatggtggcgccgaacccggg 671
Query: 489 caggcgtttgctgagcgtgtcgttcttggtgggcttccagttgcccacgaaggcgtcgtg 548
||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 672 gaggcgcttggcgagcgtgtcgttcttggtgggcttccagttgcccacgaacacgtcgtg 731
Query: 549 cgccgacggctggctcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgc 608
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 732 cgccgacggctgcttcttcttcatcggcgtcatccaccgccacatcgccgccatgaacgc 791
Query: 609 ca 610
||
Sbjct: 792 ca 793
>gb|C72113.1|C72113 C72113 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1014_1A, mRNA sequence
Length = 384
Score = 123 bits (62), Expect = 1e-025
Identities = 80/87 (91%)
Strand = Plus / Minus
Query: 563 tcttcttgatcggcgtcatccaccgccacatcgccgccatgaatgccagcgtcgcgttct 622
||||||| || |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 365 tcttcttcatnggcgtcatccaccgccacatcgccgccatgaacgccatcgtcgcgttct 306
Query: 623 gctccaggtactctgggnggnggagca 649
||||||||||||| ||| || ||||||
Sbjct: 305 gctccaggtactccgggtggtggagca 279
>gb|CB000285.1|CB000285 S345U_A06 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 536
Score = 119 bits (60), Expect = 2e-024
Identities = 96/108 (88%)
Strand = Plus / Minus
Query: 309 ggaggggttgaacggtgcctgctcggcgcaatcacggttgtcgccagagtgctcacggcc 368
|||||||||||| | |||||||||||||| || ||||||||||| |||||||| |||||
Sbjct: 113 ggaggggttgaaggcggcctgctcggcgcagtcgcggttgtcgccggagtgctcgcggcc 54
Query: 369 gacgcccatgaggtcaaggtaatactggtagtgcgagattataacgtt 416
||||||||| ||||| ||||| ||||||||||||||||| || |||||
Sbjct: 53 gacgcccataaggtcgaggtagtactggtagtgcgagatgatgacgtt 6
>emb|AL713939.6|CNS07YPL Oryza sativa chromosome 12, . BAC OJ1722_D03 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 171861
Score = 107 bits (54), Expect = 8e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 326 cctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgcccatgaggtcaa 385
|||||||||||||||| |||||||| ||||||||||| ||| |||| ||||||||||| |
Sbjct: 57781 cctgctcggcgcaatcgcggttgtcaccagagtgctcgcggacgacacccatgaggtcga 57722
Query: 386 ggtaatactggtagtgcgagattataacgttcatggcgtcgacgtatcccttgccgcaga 445
||| |||||||||| ||||| | || ||||||| |||||| ||| ||||||||| |||
Sbjct: 57721 ggttgtactggtagttggagataaaaatgttcatgtcgtcgatgtagcccttgccgtaga 57662
Query: 446 tc 447
||
Sbjct: 57661 tc 57660
>ref|NT_107160.1| Oryza sativa (japonica cultivar-group)
Length = 1294763
Score = 107 bits (54), Expect = 8e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 326 cctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgcccatgaggtcaa 385
|||||||||||||||| |||||||| ||||||||||| ||| |||| ||||||||||| |
Sbjct: 833761 cctgctcggcgcaatcgcggttgtcaccagagtgctcgcggacgacacccatgaggtcga 833702
Query: 386 ggtaatactggtagtgcgagattataacgttcatggcgtcgacgtatcccttgccgcaga 445
||| |||||||||| ||||| | || ||||||| |||||| ||| ||||||||| |||
Sbjct: 833701 ggttgtactggtagttggagataaaaatgttcatgtcgtcgatgtagcccttgccgtaga 833642
Query: 446 tc 447
||
Sbjct: 833641 tc 833640
>gb|AACV01024221.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024221, whole
genome shotgun sequence
Length = 12379
Score = 107 bits (54), Expect = 8e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 326 cctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgcccatgaggtcaa 385
|||||||||||||||| |||||||| ||||||||||| ||| |||| ||||||||||| |
Sbjct: 8700 cctgctcggcgcaatcgcggttgtcaccagagtgctcgcggacgacacccatgaggtcga 8641
Query: 386 ggtaatactggtagtgcgagattataacgttcatggcgtcgacgtatcccttgccgcaga 445
||| |||||||||| ||||| | || ||||||| |||||| ||| ||||||||| |||
Sbjct: 8640 ggttgtactggtagttggagataaaaatgttcatgtcgtcgatgtagcccttgccgtaga 8581
Query: 446 tc 447
||
Sbjct: 8580 tc 8579
>gb|CH401273.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000110
genomic scaffold, whole genome shotgun sequence
Length = 2295345
Score = 107 bits (54), Expect = 8e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 326 cctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgcccatgaggtcaa 385
|||||||||||||||| |||||||| ||||||||||| ||| |||| ||||||||||| |
Sbjct: 73657 cctgctcggcgcaatcgcggttgtcaccagagtgctcgcggacgacacccatgaggtcga 73598
Query: 386 ggtaatactggtagtgcgagattataacgttcatggcgtcgacgtatcccttgccgcaga 445
||| |||||||||| ||||| | || ||||||| |||||| ||| ||||||||| |||
Sbjct: 73597 ggttgtactggtagttggagataaaaatgttcatgtcgtcgatgtagcccttgccgtaga 73538
Query: 446 tc 447
||
Sbjct: 73537 tc 73536
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 107 bits (54), Expect = 8e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 326 cctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgcccatgaggtcaa 385
|||||||||||||||| |||||||| ||||||||||| ||| |||| ||||||||||| |
Sbjct: 5826776 cctgctcggcgcaatcgcggttgtcaccagagtgctcgcggacgacacccatgaggtcga 5826717
Query: 386 ggtaatactggtagtgcgagattataacgttcatggcgtcgacgtatcccttgccgcaga 445
||| |||||||||| ||||| | || ||||||| |||||| ||| ||||||||| |||
Sbjct: 5826716 ggttgtactggtagttggagataaaaatgttcatgtcgtcgatgtagcccttgccgtaga 5826657
Query: 446 tc 447
||
Sbjct: 5826656 tc 5826655
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 107 bits (54), Expect = 8e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 326 cctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgcccatgaggtcaa 385
|||||||||||||||| |||||||| ||||||||||| ||| |||| ||||||||||| |
Sbjct: 6639776 cctgctcggcgcaatcgcggttgtcaccagagtgctcgcggacgacacccatgaggtcga 6639717
Query: 386 ggtaatactggtagtgcgagattataacgttcatggcgtcgacgtatcccttgccgcaga 445
||| |||||||||| ||||| | || ||||||| |||||| ||| ||||||||| |||
Sbjct: 6639716 ggttgtactggtagttggagataaaaatgttcatgtcgtcgatgtagcccttgccgtaga 6639657
Query: 446 tc 447
||
Sbjct: 6639656 tc 6639655
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 107 bits (54), Expect = 8e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 326 cctgctcggcgcaatcacggttgtcgccagagtgctcacggccgacgcccatgaggtcaa 385
|||||||||||||||| |||||||| ||||||||||| ||| |||| ||||||||||| |
Sbjct: 6639651 cctgctcggcgcaatcgcggttgtcaccagagtgctcgcggacgacacccatgaggtcga 6639592
Query: 386 ggtaatactggtagtgcgagattataacgttcatggcgtcgacgtatcccttgccgcaga 445
||| |||||||||| ||||| | || ||||||| |||||| ||| ||||||||| |||
Sbjct: 6639591 ggttgtactggtagttggagataaaaatgttcatgtcgtcgatgtagcccttgccgtaga 6639532
Query: 446 tc 447
||
Sbjct: 6639531 tc 6639530
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 925,999
Number of Sequences: 438736
Number of extensions: 925999
Number of successful extensions: 4537
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4465
Number of HSP's gapped (non-prelim): 72
length of query: 681
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 660
effective length of database: 2,791,206,460
effective search space: 1842196263600
effective search space used: 1842196263600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)