BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3148257.2.1
(675 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) c... 387 e-105
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 387 e-105
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 387 e-105
dbj|AP003249.3| Oryza sativa (japonica cultivar-group) geno... 387 e-105
dbj|AP003268.4| Oryza sativa (japonica cultivar-group) geno... 387 e-105
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 387 e-105
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 387 e-105
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 387 e-105
dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA... 385 e-104
dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA... 385 e-104
dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA... 385 e-104
ref|NM_191270.1| Oryza sativa (japonica cultivar-group), p... 381 e-103
dbj|AK099834.1| Oryza sativa (japonica cultivar-group) cDNA... 357 5e-096
gb|CV722452.1|CV722452 YTPSP--01-E18.b1 TPSP-overexpression... 44 0.097
gb|CD670847.1|CD670847 OsMR267 5MT resistant rice mutant cD... 42 0.38
gb|CV722297.1|CV722297 YDARK--01-C09.g1 Etiolated rice leaf... 42 0.38
>gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002367, whole
genome shotgun sequence
Length = 23038
Score = 387 bits (195), Expect = e-105
Identities = 357/411 (86%)
Strand = Plus / Plus
Query: 15 gctcgagacaagtatgccgcaaagcagcacctttactaccgggttgttcaaactgctgtc 74
||||||||||||||||| ||||| || ||||||||||||||||| | ||| ||| ||||
Sbjct: 12942 gctcgagacaagtatgctgcaaaacaacacctttactaccgggtcatccaatctggtgtc 13001
Query: 75 atcactcttgtagtgctagtgctggttttgtttctgaagttcacggaatttcaaatcatt 134
|| | ||||| ||||||||||||| | | |||||||| || || ||||||||||||||
Sbjct: 13002 attattcttgcagtgctagtgctgataatatttctgaaatttactaaatttcaaatcatt 13061
Query: 135 gacatcttcactagtcttttggcatttattcctactggttggggcttgatttcgatcgct 194
||||||||||| || ||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 13062 gacatcttcacaagccttttggcattcattcctactggttggggcttgatttccattgct 13121
Query: 195 caagtaattcggccattcatcgaatccactgtggtctgggacagtattatttctgtggct 254
||||| ||| | |||||||| || || ||||||||||||| |||| || ||||||||||
Sbjct: 13122 caagtgattagaccattcattgagtctactgtggtctgggccagtgttgtttctgtggca 13181
Query: 255 cgtttgtatgagatactgcttggagtgttcattatggcaccagttgcattgctgtcctgg 314
||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||
Sbjct: 13182 cgtttgtatgagatactgcttggggtgtttgttatggcgccagttgcattcttttcctgg 13241
Query: 315 ttgccgggatttcaagaaatgcagacaagggtacttttcaatgaaggttttagcaggggc 374
||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |||
Sbjct: 13242 ttgcctggatttcaggaaatgcagacgagggtacttttcaatgaagctttcagcagaggc 13301
Query: 375 ctccagatatcccgtattcttactgggaaaagaacaaatacagtttgaggt 425
|||||||||||||| |||||| |||| || | ||||| | |||||||||||
Sbjct: 13302 ctccagatatcccgcattcttgctggcaagaaaacaattgcagtttgaggt 13352
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 502 ggctttgtgcttactgatatagcttagatccatattgaac 541
|||||| || ||||||||||||||||||||||||||||||
Sbjct: 14418 ggctttctgtttactgatatagcttagatccatattgaac 14457
Score = 44.1 bits (22), Expect = 0.097
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 631 gagctagttgtgtgtagctgattctattgcagca 664
||||||||||| ||||| ||||||| ||||||||
Sbjct: 14550 gagctagttgtatgtagatgattctgttgcagca 14583
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 387 bits (195), Expect = e-105
Identities = 357/411 (86%)
Strand = Plus / Minus
Query: 15 gctcgagacaagtatgccgcaaagcagcacctttactaccgggttgttcaaactgctgtc 74
||||||||||||||||| ||||| || ||||||||||||||||| | ||| ||| ||||
Sbjct: 31717101 gctcgagacaagtatgctgcaaaacaacacctttactaccgggtcatccaatctggtgtc 31717042
Query: 75 atcactcttgtagtgctagtgctggttttgtttctgaagttcacggaatttcaaatcatt 134
|| | ||||| ||||||||||||| | | |||||||| || || ||||||||||||||
Sbjct: 31717041 attattcttgcagtgctagtgctgataatatttctgaaatttactaaatttcaaatcatt 31716982
Query: 135 gacatcttcactagtcttttggcatttattcctactggttggggcttgatttcgatcgct 194
||||||||||| || ||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 31716981 gacatcttcacaagccttttggcattcattcctactggttggggcttgatttccattgct 31716922
Query: 195 caagtaattcggccattcatcgaatccactgtggtctgggacagtattatttctgtggct 254
||||| ||| | |||||||| || || ||||||||||||| |||| || ||||||||||
Sbjct: 31716921 caagtgattagaccattcattgagtctactgtggtctgggccagtgttgtttctgtggca 31716862
Query: 255 cgtttgtatgagatactgcttggagtgttcattatggcaccagttgcattgctgtcctgg 314
||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||
Sbjct: 31716861 cgtttgtatgagatactgcttggggtgtttgttatggcgccagttgcattcttttcctgg 31716802
Query: 315 ttgccgggatttcaagaaatgcagacaagggtacttttcaatgaaggttttagcaggggc 374
||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |||
Sbjct: 31716801 ttgcctggatttcaggaaatgcagacgagggtacttttcaatgaagctttcagcagaggc 31716742
Query: 375 ctccagatatcccgtattcttactgggaaaagaacaaatacagtttgaggt 425
|||||||||||||| |||||| |||| || | ||||| | |||||||||||
Sbjct: 31716741 ctccagatatcccgcattcttgctggcaagaaaacaattgcagtttgaggt 31716691
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 502 ggctttgtgcttactgatatagcttagatccatattgaac 541
|||||| || ||||||||||||||||||||||||||||||
Sbjct: 31715625 ggctttctgtttactgatatagcttagatccatattgaac 31715586
Score = 44.1 bits (22), Expect = 0.097
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 631 gagctagttgtgtgtagctgattctattgcagca 664
||||||||||| ||||| ||||||| ||||||||
Sbjct: 31715493 gagctagttgtatgtagatgattctgttgcagca 31715460
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 387 bits (195), Expect = e-105
Identities = 357/411 (86%)
Strand = Plus / Minus
Query: 15 gctcgagacaagtatgccgcaaagcagcacctttactaccgggttgttcaaactgctgtc 74
||||||||||||||||| ||||| || ||||||||||||||||| | ||| ||| ||||
Sbjct: 6164484 gctcgagacaagtatgctgcaaaacaacacctttactaccgggtcatccaatctggtgtc 6164425
Query: 75 atcactcttgtagtgctagtgctggttttgtttctgaagttcacggaatttcaaatcatt 134
|| | ||||| ||||||||||||| | | |||||||| || || ||||||||||||||
Sbjct: 6164424 attattcttgcagtgctagtgctgataatatttctgaaatttactaaatttcaaatcatt 6164365
Query: 135 gacatcttcactagtcttttggcatttattcctactggttggggcttgatttcgatcgct 194
||||||||||| || ||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 6164364 gacatcttcacaagccttttggcattcattcctactggttggggcttgatttccattgct 6164305
Query: 195 caagtaattcggccattcatcgaatccactgtggtctgggacagtattatttctgtggct 254
||||| ||| | |||||||| || || ||||||||||||| |||| || ||||||||||
Sbjct: 6164304 caagtgattagaccattcattgagtctactgtggtctgggccagtgttgtttctgtggca 6164245
Query: 255 cgtttgtatgagatactgcttggagtgttcattatggcaccagttgcattgctgtcctgg 314
||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||
Sbjct: 6164244 cgtttgtatgagatactgcttggggtgtttgttatggcgccagttgcattcttttcctgg 6164185
Query: 315 ttgccgggatttcaagaaatgcagacaagggtacttttcaatgaaggttttagcaggggc 374
||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |||
Sbjct: 6164184 ttgcctggatttcaggaaatgcagacgagggtacttttcaatgaagctttcagcagaggc 6164125
Query: 375 ctccagatatcccgtattcttactgggaaaagaacaaatacagtttgaggt 425
|||||||||||||| |||||| |||| || | ||||| | |||||||||||
Sbjct: 6164124 ctccagatatcccgcattcttgctggcaagaaaacaattgcagtttgaggt 6164074
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 502 ggctttgtgcttactgatatagcttagatccatattgaac 541
|||||| || ||||||||||||||||||||||||||||||
Sbjct: 6163008 ggctttctgtttactgatatagcttagatccatattgaac 6162969
Score = 44.1 bits (22), Expect = 0.097
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 631 gagctagttgtgtgtagctgattctattgcagca 664
||||||||||| ||||| ||||||| ||||||||
Sbjct: 6162876 gagctagttgtatgtagatgattctgttgcagca 6162843
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0435B05
Length = 150997
Score = 387 bits (195), Expect = e-105
Identities = 357/411 (86%)
Strand = Plus / Minus
Query: 15 gctcgagacaagtatgccgcaaagcagcacctttactaccgggttgttcaaactgctgtc 74
||||||||||||||||| ||||| || ||||||||||||||||| | ||| ||| ||||
Sbjct: 149454 gctcgagacaagtatgctgcaaaacaacacctttactaccgggtcatccaatctggtgtc 149395
Query: 75 atcactcttgtagtgctagtgctggttttgtttctgaagttcacggaatttcaaatcatt 134
|| | ||||| ||||||||||||| | | |||||||| || || ||||||||||||||
Sbjct: 149394 attattcttgcagtgctagtgctgataatatttctgaaatttactaaatttcaaatcatt 149335
Query: 135 gacatcttcactagtcttttggcatttattcctactggttggggcttgatttcgatcgct 194
||||||||||| || ||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 149334 gacatcttcacaagccttttggcattcattcctactggttggggcttgatttccattgct 149275
Query: 195 caagtaattcggccattcatcgaatccactgtggtctgggacagtattatttctgtggct 254
||||| ||| | |||||||| || || ||||||||||||| |||| || ||||||||||
Sbjct: 149274 caagtgattagaccattcattgagtctactgtggtctgggccagtgttgtttctgtggca 149215
Query: 255 cgtttgtatgagatactgcttggagtgttcattatggcaccagttgcattgctgtcctgg 314
||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||
Sbjct: 149214 cgtttgtatgagatactgcttggggtgtttgttatggcgccagttgcattcttttcctgg 149155
Query: 315 ttgccgggatttcaagaaatgcagacaagggtacttttcaatgaaggttttagcaggggc 374
||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |||
Sbjct: 149154 ttgcctggatttcaggaaatgcagacgagggtacttttcaatgaagctttcagcagaggc 149095
Query: 375 ctccagatatcccgtattcttactgggaaaagaacaaatacagtttgaggt 425
|||||||||||||| |||||| |||| || | ||||| | |||||||||||
Sbjct: 149094 ctccagatatcccgcattcttgctggcaagaaaacaattgcagtttgaggt 149044
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 502 ggctttgtgcttactgatatagcttagatccatattgaac 541
|||||| || ||||||||||||||||||||||||||||||
Sbjct: 147978 ggctttctgtttactgatatagcttagatccatattgaac 147939
Score = 44.1 bits (22), Expect = 0.097
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 631 gagctagttgtgtgtagctgattctattgcagca 664
||||||||||| ||||| ||||||| ||||||||
Sbjct: 147846 gagctagttgtatgtagatgattctgttgcagca 147813
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0503C12
Length = 147180
Score = 387 bits (195), Expect = e-105
Identities = 357/411 (86%)
Strand = Plus / Minus
Query: 15 gctcgagacaagtatgccgcaaagcagcacctttactaccgggttgttcaaactgctgtc 74
||||||||||||||||| ||||| || ||||||||||||||||| | ||| ||| ||||
Sbjct: 50163 gctcgagacaagtatgctgcaaaacaacacctttactaccgggtcatccaatctggtgtc 50104
Query: 75 atcactcttgtagtgctagtgctggttttgtttctgaagttcacggaatttcaaatcatt 134
|| | ||||| ||||||||||||| | | |||||||| || || ||||||||||||||
Sbjct: 50103 attattcttgcagtgctagtgctgataatatttctgaaatttactaaatttcaaatcatt 50044
Query: 135 gacatcttcactagtcttttggcatttattcctactggttggggcttgatttcgatcgct 194
||||||||||| || ||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 50043 gacatcttcacaagccttttggcattcattcctactggttggggcttgatttccattgct 49984
Query: 195 caagtaattcggccattcatcgaatccactgtggtctgggacagtattatttctgtggct 254
||||| ||| | |||||||| || || ||||||||||||| |||| || ||||||||||
Sbjct: 49983 caagtgattagaccattcattgagtctactgtggtctgggccagtgttgtttctgtggca 49924
Query: 255 cgtttgtatgagatactgcttggagtgttcattatggcaccagttgcattgctgtcctgg 314
||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||
Sbjct: 49923 cgtttgtatgagatactgcttggggtgtttgttatggcgccagttgcattcttttcctgg 49864
Query: 315 ttgccgggatttcaagaaatgcagacaagggtacttttcaatgaaggttttagcaggggc 374
||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |||
Sbjct: 49863 ttgcctggatttcaggaaatgcagacgagggtacttttcaatgaagctttcagcagaggc 49804
Query: 375 ctccagatatcccgtattcttactgggaaaagaacaaatacagtttgaggt 425
|||||||||||||| |||||| |||| || | ||||| | |||||||||||
Sbjct: 49803 ctccagatatcccgcattcttgctggcaagaaaacaattgcagtttgaggt 49753
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 502 ggctttgtgcttactgatatagcttagatccatattgaac 541
|||||| || ||||||||||||||||||||||||||||||
Sbjct: 48687 ggctttctgtttactgatatagcttagatccatattgaac 48648
Score = 44.1 bits (22), Expect = 0.097
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 631 gagctagttgtgtgtagctgattctattgcagca 664
||||||||||| ||||| ||||||| ||||||||
Sbjct: 48555 gagctagttgtatgtagatgattctgttgcagca 48522
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 387 bits (195), Expect = e-105
Identities = 357/411 (86%)
Strand = Plus / Minus
Query: 15 gctcgagacaagtatgccgcaaagcagcacctttactaccgggttgttcaaactgctgtc 74
||||||||||||||||| ||||| || ||||||||||||||||| | ||| ||| ||||
Sbjct: 6067127 gctcgagacaagtatgctgcaaaacaacacctttactaccgggtcatccaatctggtgtc 6067068
Query: 75 atcactcttgtagtgctagtgctggttttgtttctgaagttcacggaatttcaaatcatt 134
|| | ||||| ||||||||||||| | | |||||||| || || ||||||||||||||
Sbjct: 6067067 attattcttgcagtgctagtgctgataatatttctgaaatttactaaatttcaaatcatt 6067008
Query: 135 gacatcttcactagtcttttggcatttattcctactggttggggcttgatttcgatcgct 194
||||||||||| || ||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 6067007 gacatcttcacaagccttttggcattcattcctactggttggggcttgatttccattgct 6066948
Query: 195 caagtaattcggccattcatcgaatccactgtggtctgggacagtattatttctgtggct 254
||||| ||| | |||||||| || || ||||||||||||| |||| || ||||||||||
Sbjct: 6066947 caagtgattagaccattcattgagtctactgtggtctgggccagtgttgtttctgtggca 6066888
Query: 255 cgtttgtatgagatactgcttggagtgttcattatggcaccagttgcattgctgtcctgg 314
||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||
Sbjct: 6066887 cgtttgtatgagatactgcttggggtgtttgttatggcgccagttgcattcttttcctgg 6066828
Query: 315 ttgccgggatttcaagaaatgcagacaagggtacttttcaatgaaggttttagcaggggc 374
||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |||
Sbjct: 6066827 ttgcctggatttcaggaaatgcagacgagggtacttttcaatgaagctttcagcagaggc 6066768
Query: 375 ctccagatatcccgtattcttactgggaaaagaacaaatacagtttgaggt 425
|||||||||||||| |||||| |||| || | ||||| | |||||||||||
Sbjct: 6066767 ctccagatatcccgcattcttgctggcaagaaaacaattgcagtttgaggt 6066717
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 502 ggctttgtgcttactgatatagcttagatccatattgaac 541
|||||| || ||||||||||||||||||||||||||||||
Sbjct: 6065651 ggctttctgtttactgatatagcttagatccatattgaac 6065612
Score = 44.1 bits (22), Expect = 0.097
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 631 gagctagttgtgtgtagctgattctattgcagca 664
||||||||||| ||||| ||||||| ||||||||
Sbjct: 6065519 gagctagttgtatgtagatgattctgttgcagca 6065486
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 387 bits (195), Expect = e-105
Identities = 357/411 (86%)
Strand = Plus / Minus
Query: 15 gctcgagacaagtatgccgcaaagcagcacctttactaccgggttgttcaaactgctgtc 74
||||||||||||||||| ||||| || ||||||||||||||||| | ||| ||| ||||
Sbjct: 31268848 gctcgagacaagtatgctgcaaaacaacacctttactaccgggtcatccaatctggtgtc 31268789
Query: 75 atcactcttgtagtgctagtgctggttttgtttctgaagttcacggaatttcaaatcatt 134
|| | ||||| ||||||||||||| | | |||||||| || || ||||||||||||||
Sbjct: 31268788 attattcttgcagtgctagtgctgataatatttctgaaatttactaaatttcaaatcatt 31268729
Query: 135 gacatcttcactagtcttttggcatttattcctactggttggggcttgatttcgatcgct 194
||||||||||| || ||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 31268728 gacatcttcacaagccttttggcattcattcctactggttggggcttgatttccattgct 31268669
Query: 195 caagtaattcggccattcatcgaatccactgtggtctgggacagtattatttctgtggct 254
||||| ||| | |||||||| || || ||||||||||||| |||| || ||||||||||
Sbjct: 31268668 caagtgattagaccattcattgagtctactgtggtctgggccagtgttgtttctgtggca 31268609
Query: 255 cgtttgtatgagatactgcttggagtgttcattatggcaccagttgcattgctgtcctgg 314
||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||
Sbjct: 31268608 cgtttgtatgagatactgcttggggtgtttgttatggcgccagttgcattcttttcctgg 31268549
Query: 315 ttgccgggatttcaagaaatgcagacaagggtacttttcaatgaaggttttagcaggggc 374
||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |||
Sbjct: 31268548 ttgcctggatttcaggaaatgcagacgagggtacttttcaatgaagctttcagcagaggc 31268489
Query: 375 ctccagatatcccgtattcttactgggaaaagaacaaatacagtttgaggt 425
|||||||||||||| |||||| |||| || | ||||| | |||||||||||
Sbjct: 31268488 ctccagatatcccgcattcttgctggcaagaaaacaattgcagtttgaggt 31268438
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 502 ggctttgtgcttactgatatagcttagatccatattgaac 541
|||||| || ||||||||||||||||||||||||||||||
Sbjct: 31267372 ggctttctgtttactgatatagcttagatccatattgaac 31267333
Score = 44.1 bits (22), Expect = 0.097
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 631 gagctagttgtgtgtagctgattctattgcagca 664
||||||||||| ||||| ||||||| ||||||||
Sbjct: 31267240 gagctagttgtatgtagatgattctgttgcagca 31267207
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 387 bits (195), Expect = e-105
Identities = 357/411 (86%)
Strand = Plus / Minus
Query: 15 gctcgagacaagtatgccgcaaagcagcacctttactaccgggttgttcaaactgctgtc 74
||||||||||||||||| ||||| || ||||||||||||||||| | ||| ||| ||||
Sbjct: 31636431 gctcgagacaagtatgctgcaaaacaacacctttactaccgggtcatccaatctggtgtc 31636372
Query: 75 atcactcttgtagtgctagtgctggttttgtttctgaagttcacggaatttcaaatcatt 134
|| | ||||| ||||||||||||| | | |||||||| || || ||||||||||||||
Sbjct: 31636371 attattcttgcagtgctagtgctgataatatttctgaaatttactaaatttcaaatcatt 31636312
Query: 135 gacatcttcactagtcttttggcatttattcctactggttggggcttgatttcgatcgct 194
||||||||||| || ||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 31636311 gacatcttcacaagccttttggcattcattcctactggttggggcttgatttccattgct 31636252
Query: 195 caagtaattcggccattcatcgaatccactgtggtctgggacagtattatttctgtggct 254
||||| ||| | |||||||| || || ||||||||||||| |||| || ||||||||||
Sbjct: 31636251 caagtgattagaccattcattgagtctactgtggtctgggccagtgttgtttctgtggca 31636192
Query: 255 cgtttgtatgagatactgcttggagtgttcattatggcaccagttgcattgctgtcctgg 314
||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||
Sbjct: 31636191 cgtttgtatgagatactgcttggggtgtttgttatggcgccagttgcattcttttcctgg 31636132
Query: 315 ttgccgggatttcaagaaatgcagacaagggtacttttcaatgaaggttttagcaggggc 374
||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |||
Sbjct: 31636131 ttgcctggatttcaggaaatgcagacgagggtacttttcaatgaagctttcagcagaggc 31636072
Query: 375 ctccagatatcccgtattcttactgggaaaagaacaaatacagtttgaggt 425
|||||||||||||| |||||| |||| || | ||||| | |||||||||||
Sbjct: 31636071 ctccagatatcccgcattcttgctggcaagaaaacaattgcagtttgaggt 31636021
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 502 ggctttgtgcttactgatatagcttagatccatattgaac 541
|||||| || ||||||||||||||||||||||||||||||
Sbjct: 31634955 ggctttctgtttactgatatagcttagatccatattgaac 31634916
Score = 44.1 bits (22), Expect = 0.097
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 631 gagctagttgtgtgtagctgattctattgcagca 664
||||||||||| ||||| ||||||| ||||||||
Sbjct: 31634823 gagctagttgtatgtagatgattctgttgcagca 31634790
>dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095O05, full
insert sequence
Length = 5774
Score = 385 bits (194), Expect = e-104
Identities = 356/410 (86%)
Strand = Plus / Plus
Query: 15 gctcgagacaagtatgccgcaaagcagcacctttactaccgggttgttcaaactgctgtc 74
||||||||||||||||| ||||| || ||||||||||||||||| | ||| ||| ||||
Sbjct: 5101 gctcgagacaagtatgctgcaaaacaacacctttactaccgggtcatccaatctggtgtc 5160
Query: 75 atcactcttgtagtgctagtgctggttttgtttctgaagttcacggaatttcaaatcatt 134
|| | ||||| ||||||||||||| | | |||||||| || || ||||||||||||||
Sbjct: 5161 attattcttgcagtgctagtgctgataatatttctgaaatttactaaatttcaaatcatt 5220
Query: 135 gacatcttcactagtcttttggcatttattcctactggttggggcttgatttcgatcgct 194
||||||||||| || ||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 5221 gacatcttcacaagccttttggcattcattcctactggttggggcttgatttccattgct 5280
Query: 195 caagtaattcggccattcatcgaatccactgtggtctgggacagtattatttctgtggct 254
||||| ||| | |||||||| || || ||||||||||||| |||| || ||||||||||
Sbjct: 5281 caagtgattagaccattcattgagtctactgtggtctgggccagtgttgtttctgtggca 5340
Query: 255 cgtttgtatgagatactgcttggagtgttcattatggcaccagttgcattgctgtcctgg 314
||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||
Sbjct: 5341 cgtttgtatgagatactgcttggggtgtttgttatggcgccagttgcattcttttcctgg 5400
Query: 315 ttgccgggatttcaagaaatgcagacaagggtacttttcaatgaaggttttagcaggggc 374
||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |||
Sbjct: 5401 ttgcctggatttcaggaaatgcagacgagggtacttttcaatgaagctttcagcagaggc 5460
Query: 375 ctccagatatcccgtattcttactgggaaaagaacaaatacagtttgagg 424
|||||||||||||| |||||| |||| || | ||||| | ||||||||||
Sbjct: 5461 ctccagatatcccgcattcttgctggcaagaaaacaattgcagtttgagg 5510
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 502 ggctttgtgcttactgatatagcttagatccatattgaac 541
|||||| || ||||||||||||||||||||||||||||||
Sbjct: 5579 ggctttctgtttactgatatagcttagatccatattgaac 5618
Score = 44.1 bits (22), Expect = 0.097
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 631 gagctagttgtgtgtagctgattctattgcagca 664
||||||||||| ||||| ||||||| ||||||||
Sbjct: 5711 gagctagttgtatgtagatgattctgttgcagca 5744
>dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036H01, full
insert sequence
Length = 5949
Score = 385 bits (194), Expect = e-104
Identities = 356/410 (86%)
Strand = Plus / Plus
Query: 15 gctcgagacaagtatgccgcaaagcagcacctttactaccgggttgttcaaactgctgtc 74
||||||||||||||||| ||||| || ||||||||||||||||| | ||| ||| ||||
Sbjct: 5005 gctcgagacaagtatgctgcaaaacaacacctttactaccgggtcatccaatctggtgtc 5064
Query: 75 atcactcttgtagtgctagtgctggttttgtttctgaagttcacggaatttcaaatcatt 134
|| | ||||| ||||||||||||| | | |||||||| || || ||||||||||||||
Sbjct: 5065 attattcttgcagtgctagtgctgataatatttctgaaatttactaaatttcaaatcatt 5124
Query: 135 gacatcttcactagtcttttggcatttattcctactggttggggcttgatttcgatcgct 194
||||||||||| || ||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 5125 gacatcttcacaagccttttggcattcattcctactggttggggcttgatttccattgct 5184
Query: 195 caagtaattcggccattcatcgaatccactgtggtctgggacagtattatttctgtggct 254
||||| ||| | |||||||| || || ||||||||||||| |||| || ||||||||||
Sbjct: 5185 caagtgattagaccattcattgagtctactgtggtctgggccagtgttgtttctgtggca 5244
Query: 255 cgtttgtatgagatactgcttggagtgttcattatggcaccagttgcattgctgtcctgg 314
||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||
Sbjct: 5245 cgtttgtatgagatactgcttggggtgtttgttatggcgccagttgcattcttttcctgg 5304
Query: 315 ttgccgggatttcaagaaatgcagacaagggtacttttcaatgaaggttttagcaggggc 374
||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |||
Sbjct: 5305 ttgcctggatttcaggaaatgcagacgagggtacttttcaatgaagctttcagcagaggc 5364
Query: 375 ctccagatatcccgtattcttactgggaaaagaacaaatacagtttgagg 424
|||||||||||||| |||||| |||| || | ||||| | ||||||||||
Sbjct: 5365 ctccagatatcccgcattcttgctggcaagaaaacaattgcagtttgagg 5414
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 502 ggctttgtgcttactgatatagcttagatccatattgaac 541
|||||| || ||||||||||||||||||||||||||||||
Sbjct: 5483 ggctttctgtttactgatatagcttagatccatattgaac 5522
Score = 44.1 bits (22), Expect = 0.097
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 631 gagctagttgtgtgtagctgattctattgcagca 664
||||||||||| ||||| ||||||| ||||||||
Sbjct: 5615 gagctagttgtatgtagatgattctgttgcagca 5648
>dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088I17, full
insert sequence
Length = 5396
Score = 385 bits (194), Expect = e-104
Identities = 356/410 (86%)
Strand = Plus / Plus
Query: 15 gctcgagacaagtatgccgcaaagcagcacctttactaccgggttgttcaaactgctgtc 74
||||||||||||||||| ||||| || ||||||||||||||||| | ||| ||| ||||
Sbjct: 4690 gctcgagacaagtatgctgcaaaacaacacctttactaccgggtcatccaatctggtgtc 4749
Query: 75 atcactcttgtagtgctagtgctggttttgtttctgaagttcacggaatttcaaatcatt 134
|| | ||||| ||||||||||||| | | |||||||| || || ||||||||||||||
Sbjct: 4750 attattcttgcagtgctagtgctgataatatttctgaaatttactaaatttcaaatcatt 4809
Query: 135 gacatcttcactagtcttttggcatttattcctactggttggggcttgatttcgatcgct 194
||||||||||| || ||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 4810 gacatcttcacaagccttttggcattcattcctactggttggggcttgatttccattgct 4869
Query: 195 caagtaattcggccattcatcgaatccactgtggtctgggacagtattatttctgtggct 254
||||| ||| | |||||||| || || ||||||||||||| |||| || ||||||||||
Sbjct: 4870 caagtgattagaccattcattgagtctactgtggtctgggccagtgttgtttctgtggca 4929
Query: 255 cgtttgtatgagatactgcttggagtgttcattatggcaccagttgcattgctgtcctgg 314
||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||
Sbjct: 4930 cgtttgtatgagatactgcttggggtgtttgttatggcgccagttgcattcttttcctgg 4989
Query: 315 ttgccgggatttcaagaaatgcagacaagggtacttttcaatgaaggttttagcaggggc 374
||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |||
Sbjct: 4990 ttgcctggatttcaggaaatgcagacgagggtacttttcaatgaagctttcagcagaggc 5049
Query: 375 ctccagatatcccgtattcttactgggaaaagaacaaatacagtttgagg 424
|||||||||||||| |||||| |||| || | ||||| | ||||||||||
Sbjct: 5050 ctccagatatcccgcattcttgctggcaagaaaacaattgcagtttgagg 5099
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 502 ggctttgtgcttactgatatagcttagatccatattgaac 541
|||||| || ||||||||||||||||||||||||||||||
Sbjct: 5168 ggctttctgtttactgatatagcttagatccatattgaac 5207
Score = 44.1 bits (22), Expect = 0.097
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 631 gagctagttgtgtgtagctgattctattgcagca 664
||||||||||| ||||| ||||||| ||||||||
Sbjct: 5300 gagctagttgtatgtagatgattctgttgcagca 5333
>ref|NM_191270.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5373
Score = 381 bits (192), Expect = e-103
Identities = 354/408 (86%)
Strand = Plus / Plus
Query: 15 gctcgagacaagtatgccgcaaagcagcacctttactaccgggttgttcaaactgctgtc 74
||||||||||||||||| ||||| || ||||||||||||||||| | ||| ||| ||||
Sbjct: 4966 gctcgagacaagtatgctgcaaaacaacacctttactaccgggtcatccaatctggtgtc 5025
Query: 75 atcactcttgtagtgctagtgctggttttgtttctgaagttcacggaatttcaaatcatt 134
|| | ||||| ||||||||||||| | | |||||||| || || ||||||||||||||
Sbjct: 5026 attattcttgcagtgctagtgctgataatatttctgaaatttactaaatttcaaatcatt 5085
Query: 135 gacatcttcactagtcttttggcatttattcctactggttggggcttgatttcgatcgct 194
||||||||||| || ||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 5086 gacatcttcacaagccttttggcattcattcctactggttggggcttgatttccattgct 5145
Query: 195 caagtaattcggccattcatcgaatccactgtggtctgggacagtattatttctgtggct 254
||||| ||| | |||||||| || || ||||||||||||| |||| || ||||||||||
Sbjct: 5146 caagtgattagaccattcattgagtctactgtggtctgggccagtgttgtttctgtggca 5205
Query: 255 cgtttgtatgagatactgcttggagtgttcattatggcaccagttgcattgctgtcctgg 314
||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||
Sbjct: 5206 cgtttgtatgagatactgcttggggtgtttgttatggcgccagttgcattcttttcctgg 5265
Query: 315 ttgccgggatttcaagaaatgcagacaagggtacttttcaatgaaggttttagcaggggc 374
||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |||
Sbjct: 5266 ttgcctggatttcaggaaatgcagacgagggtacttttcaatgaagctttcagcagaggc 5325
Query: 375 ctccagatatcccgtattcttactgggaaaagaacaaatacagtttga 422
|||||||||||||| |||||| |||| || | ||||| | ||||||||
Sbjct: 5326 ctccagatatcccgcattcttgctggcaagaaaacaattgcagtttga 5373
>dbj|AK099834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106H04, full
insert sequence
Length = 1501
Score = 357 bits (180), Expect = 5e-096
Identities = 353/410 (86%), Gaps = 3/410 (0%)
Strand = Plus / Plus
Query: 15 gctcgagacaagtatgccgcaaagcagcacctttactaccgggttgttcaaactgctgtc 74
||||||||||||||||| ||||| || ||||||||||||||||| | ||| ||| ||||
Sbjct: 798 gctcgagacaagtatgctgcaaaacaacacctttactaccgggtcatccaatctggtgtc 857
Query: 75 atcactcttgtagtgctagtgctggttttgtttctgaagttcacggaatttcaaatcatt 134
|| | ||||| ||||||||||||| | | |||||||| || || ||||||||||||||
Sbjct: 858 attattcttgcagtgctagtgctgataatatttctgaaatttactaaatttcaaatcatt 917
Query: 135 gacatcttcactagtcttttggcatttattcctactggttggggcttgatttcgatcgct 194
||||||||||| || ||||||||||| |||||| ||||||||||||||||| || |||
Sbjct: 918 gacatcttcacaagccttttggcattcattcct---ggttggggcttgatttccattgct 974
Query: 195 caagtaattcggccattcatcgaatccactgtggtctgggacagtattatttctgtggct 254
||||| ||| | |||||||| || || ||||||||||||| |||| || ||||||||||
Sbjct: 975 caagtgattagaccattcattgagtctactgtggtctgggccagtgttgtttctgtggca 1034
Query: 255 cgtttgtatgagatactgcttggagtgttcattatggcaccagttgcattgctgtcctgg 314
||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||
Sbjct: 1035 cgtttgtatgagatactgcttggggtgtttgttatggcgccagttgcattcttttcctgg 1094
Query: 315 ttgccgggatttcaagaaatgcagacaagggtacttttcaatgaaggttttagcaggggc 374
||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||| |||
Sbjct: 1095 ttgcctggatttcaggaaatgcagacgagggtacttttcaatgaagctttcagcagaggc 1154
Query: 375 ctccagatatcccgtattcttactgggaaaagaacaaatacagtttgagg 424
|||||||||||||| |||||| |||| || | ||||| | ||||||||||
Sbjct: 1155 ctccagatatcccgcattcttgctggcaagaaaacaattgcagtttgagg 1204
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 502 ggctttgtgcttactgatatagcttagatccatattgaac 541
|||||| || ||||||||||||||||||||||||||||||
Sbjct: 1273 ggctttctgtttactgatatagcttagatccatattgaac 1312
Score = 44.1 bits (22), Expect = 0.097
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 631 gagctagttgtgtgtagctgattctattgcagca 664
||||||||||| ||||| ||||||| ||||||||
Sbjct: 1405 gagctagttgtatgtagatgattctgttgcagca 1438
>gb|CV722452.1|CV722452 YTPSP--01-E18.b1 TPSP-overexpression transgenic rice yeast two
hybrid lambda phage cDNA library (YTPSP) Oryza sativa
(japonica cultivar-group) cDNA clone YTPSP--01-E18,
mRNA sequence
Length = 292
Score = 44.1 bits (22), Expect = 0.097
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgagacaag 26
||||||||||||||| ||||||||||
Sbjct: 7 gaattcggcacgaggatcgagacaag 32
>gb|CD670847.1|CD670847 OsMR267 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 633
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 39 gaattcggcacgaggctcgag 59
>gb|CV722297.1|CV722297 YDARK--01-C09.g1 Etiolated rice leaf yeast two hybrid lambda
phage cDNA library (YDARK) Oryza sativa (japonica
cultivar-group) cDNA clone YDARK--01-C09, mRNA sequence
Length = 488
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 9 gaattcggcacgaggctcgag 29
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 923,266
Number of Sequences: 438736
Number of extensions: 923266
Number of successful extensions: 7886
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7814
Number of HSP's gapped (non-prelim): 71
length of query: 675
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 654
effective length of database: 2,791,206,460
effective search space: 1825449024840
effective search space used: 1825449024840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)