BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115474.2.1
(798 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK067355.1| Oryza sativa (japonica cultivar-group) cDNA... 547 e-153
ref|XM_463649.1| Oryza sativa (japonica cultivar-group), p... 547 e-153
dbj|AK067580.1| Oryza sativa (japonica cultivar-group) cDNA... 539 e-151
dbj|AK121135.1| Oryza sativa (japonica cultivar-group) cDNA... 519 e-145
gb|AACV01002960.1| Oryza sativa (japonica cultivar-group) c... 414 e-113
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 414 e-113
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 414 e-113
dbj|AP004672.3| Oryza sativa (japonica cultivar-group) geno... 414 e-113
dbj|AP006167.3| Oryza sativa (japonica cultivar-group) geno... 414 e-113
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 414 e-113
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 414 e-113
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 414 e-113
gb|CB678613.1|CB678613 OSJNEe16O18.f OSJNEe Oryza sativa (j... 331 3e-088
gb|D24949.1|D24949 RICR2833A Rice root Oryza sativa (japoni... 165 5e-038
gb|CB649580.1|CB649580 OSJNEb13J09.r OSJNEb Oryza sativa (j... 111 6e-022
gb|AU064044.1|AU064044 AU064044 Rice panicle at flowering s... 98 9e-018
gb|AU064899.1|AU064899 AU064899 Rice panicle (between 3cm t... 98 9e-018
gb|AU094972.1|AU094972 AU094972 Rice panicle (between 3cm t... 98 9e-018
gb|CB678614.1|CB678614 OSJNEe16O18.r OSJNEe Oryza sativa (j... 70 2e-009
gb|D22220.1|D22220 RICC10521A Rice callus Oryza sativa (jap... 68 8e-009
gb|D47151.1|D47151 RICS12303A Rice green shoot Oryza sativa... 60 2e-006
gb|CB676673.1|CB676673 OSJNEe13A19.f OSJNEe Oryza sativa (j... 60 2e-006
ref|NM_196042.1| Oryza sativa (japonica cultivar-group) put... 60 2e-006
gb|D47801.1|D47801 RICS13496A Rice green shoot Oryza sativa... 56 3e-005
dbj|AK121000.1| Oryza sativa (japonica cultivar-group) cDNA... 52 5e-004
dbj|AK060709.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L0... 50 0.002
gb|AACV01021333.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 50 0.002
ref|XM_469566.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AC083945.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP005112.3| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|AACV01005369.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
ref|XM_467688.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.007
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 48 0.007
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|AC130599.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|AC104705.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|AACV01011144.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
ref|NT_107225.1| Oryza sativa (japonica cultivar-group) 44 0.11
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|AU092363.1|AU092363 AU092363 Rice callus Oryza sativa (j... 42 0.45
>dbj|AK067355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L13, full
insert sequence
Length = 1829
Score = 547 bits (276), Expect = e-153
Identities = 655/780 (83%), Gaps = 1/780 (0%)
Strand = Plus / Minus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 1251 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 1192
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
||||||||||| ||||| || ||||| |||||||||||| | ||| | | ||||||
Sbjct: 1191 ataacatctgccgtcatcgccaatataggagttcgccacctctgaatactagcacattct 1132
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatcctt 197
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1131 ggtggcgcctctccgcgttctattcgctcatttagatctctttccatcactctaatcctt 1072
Query: 198 tttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaa 257
| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1071 ctagtggcttcaaacccatccatttctggcatctgtatgtccatgaaacaagcatcaaaa 1012
Query: 258 ttgtgaggaggtttcagcagtgtgattgcttccttcccactgtcagcacaagttacttcc 317
||||| || ||||| |||| ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 1011 ttgtgcgggggttttagcaatgtgattgcttttttcccgctgtctgcacaagtaacttcg 952
Query: 318 gcgccatatttctttagagcgcctgcagcaaccttgagatttacaatattatcatcaacc 377
|| ||||| ||||| ||||| || ||||| ||||| || || || ||||| || || ||
Sbjct: 951 gcaccatacttcttaagagcaccagcagccaccttcaggttaacgatattgtcgtcgaca 892
Query: 378 actatgattcgcttcttgtgaagaaggctgcccagtgttgaattgccgactactccattc 437
|| |||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 891 acaatgatttgcttcttgtgaagaaggctgcccaatgttgaattgccaactactccattc 832
Query: 438 ctgcaatgcagtttatctatcccacccaatgctctttgtagcgaaacctgaagcatgctt 497
||||| |||| ||||| | |||||| | ||||| | |||| || |||||||||||||||
Sbjct: 831 ctgcagtgcaccttatcgaccccacctagtgctcgtcgtagtgagacctgaagcatgctt 772
Query: 498 gcacgaagtggcttcataattacattcaagttatattccctgaatatatgtgaattgctc 557
|||||||| |||||||| |||||||||||||||| ||||||| || ||| |||| || |
Sbjct: 771 gcacgaagcggcttcattattacattcaagttatgttccctggatgtatctgaaccgccc 712
Query: 558 ttgacagaacttttagggttctccaaaagaaataactttgtagagtctggctgatacaat 617
||| ||||||| || | || |||||||||||||||| | ||||||||||| | || |
Sbjct: 711 ttgggagaacttgcagagctccccaaaagaaataacttaggagagtctggcttgt-catt 653
Query: 618 gttcctcaatttagtaaccaaaagaggcatggagtgggattctttcagccaggtttcttt 677
||||||||||| |||||| ||||||| || | |||||||| || ||||||||||| ||
Sbjct: 652 attcctcaatttgttaaccagaagaggcgtgcaatgggattccttaagccaggtttcctt 593
Query: 678 gtcaatgagcacaagctttgcaatctgtgatccacaattatttttagaaatatactgatc 737
||| || ||||| ||||||||| || |||||||| | || ||||||||| ||||||
Sbjct: 592 gtctattagcactagctttgcagtcagtgatccagagtttaatttagaaatgaactgatt 533
Query: 738 taggtcagttgtcaattcagtctgaactcccagtctttgcaaatgatacttagtaacctt 797
||| |||| ||||| ||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct: 532 tagctcagctgtcagttcggtcttaactccaagtctttgcaagtgatacttggtaacctt 473
>ref|XM_463649.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3072
Score = 547 bits (276), Expect = e-153
Identities = 655/780 (83%), Gaps = 1/780 (0%)
Strand = Plus / Minus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 3008 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 2949
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
||||||||||| ||||| || ||||| |||||||||||| | ||| | | ||||||
Sbjct: 2948 ataacatctgccgtcatcgccaatataggagttcgccacctctgaatactagcacattct 2889
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatcctt 197
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2888 ggtggcgcctctccgcgttctattcgctcatttagatctctttccatcactctaatcctt 2829
Query: 198 tttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaa 257
| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2828 ctagtggcttcaaacccatccatttctggcatctgtatgtccatgaaacaagcatcaaaa 2769
Query: 258 ttgtgaggaggtttcagcagtgtgattgcttccttcccactgtcagcacaagttacttcc 317
||||| || ||||| |||| ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 2768 ttgtgcgggggttttagcaatgtgattgcttttttcccgctgtctgcacaagtaacttcg 2709
Query: 318 gcgccatatttctttagagcgcctgcagcaaccttgagatttacaatattatcatcaacc 377
|| ||||| ||||| ||||| || ||||| ||||| || || || ||||| || || ||
Sbjct: 2708 gcaccatacttcttaagagcaccagcagccaccttcaggttaacgatattgtcgtcgaca 2649
Query: 378 actatgattcgcttcttgtgaagaaggctgcccagtgttgaattgccgactactccattc 437
|| |||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 2648 acaatgatttgcttcttgtgaagaaggctgcccaatgttgaattgccaactactccattc 2589
Query: 438 ctgcaatgcagtttatctatcccacccaatgctctttgtagcgaaacctgaagcatgctt 497
||||| |||| ||||| | |||||| | ||||| | |||| || |||||||||||||||
Sbjct: 2588 ctgcagtgcaccttatcgaccccacctagtgctcgtcgtagtgagacctgaagcatgctt 2529
Query: 498 gcacgaagtggcttcataattacattcaagttatattccctgaatatatgtgaattgctc 557
|||||||| |||||||| |||||||||||||||| ||||||| || ||| |||| || |
Sbjct: 2528 gcacgaagcggcttcattattacattcaagttatgttccctggatgtatctgaaccgccc 2469
Query: 558 ttgacagaacttttagggttctccaaaagaaataactttgtagagtctggctgatacaat 617
||| ||||||| || | || |||||||||||||||| | ||||||||||| | || |
Sbjct: 2468 ttgggagaacttgcagagctccccaaaagaaataacttaggagagtctggcttgt-catt 2410
Query: 618 gttcctcaatttagtaaccaaaagaggcatggagtgggattctttcagccaggtttcttt 677
||||||||||| |||||| ||||||| || | |||||||| || ||||||||||| ||
Sbjct: 2409 attcctcaatttgttaaccagaagaggcgtgcaatgggattccttaagccaggtttcctt 2350
Query: 678 gtcaatgagcacaagctttgcaatctgtgatccacaattatttttagaaatatactgatc 737
||| || ||||| ||||||||| || |||||||| | || ||||||||| ||||||
Sbjct: 2349 gtctattagcactagctttgcagtcagtgatccagagtttaatttagaaatgaactgatt 2290
Query: 738 taggtcagttgtcaattcagtctgaactcccagtctttgcaaatgatacttagtaacctt 797
||| |||| ||||| ||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct: 2289 tagctcagctgtcagttcggtcttaactccaagtctttgcaagtgatacttggtaacctt 2230
>dbj|AK067580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112K17, full
insert sequence
Length = 2629
Score = 539 bits (272), Expect = e-151
Identities = 655/780 (83%), Gaps = 2/780 (0%)
Strand = Plus / Minus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 1995 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 1936
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
||||||||||| ||||| || ||||| |||||||||||| | ||| | | ||||||
Sbjct: 1935 ataacatctgccgtcatcgccaatataggagttcgccacctctgaatactagcacattct 1876
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatcctt 197
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1875 ggtggcgcctctccgcgttctattcgctcatttagatctctttccatcactctaatcctt 1816
Query: 198 tttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaa 257
| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1815 ctagtggcttcaaacccatccatttctggcatctgtatgtccatgaaacaagcatcaaaa 1756
Query: 258 ttgtgaggaggtttcagcagtgtgattgcttccttcccactgtcagcacaagttacttcc 317
||||| || ||||| |||| ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 1755 ttgtgcgggggttttagcaatgtgattgcttttttccc-ctgtctgcacaagtaacttcg 1697
Query: 318 gcgccatatttctttagagcgcctgcagcaaccttgagatttacaatattatcatcaacc 377
|| ||||| ||||| ||||| || ||||| ||||| || || || ||||| || || ||
Sbjct: 1696 gcaccatacttcttaagagcaccagcagccaccttcaggttaacgatattgtcgtcgaca 1637
Query: 378 actatgattcgcttcttgtgaagaaggctgcccagtgttgaattgccgactactccattc 437
|| |||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 1636 acaatgatttgcttcttgtgaagaaggctgcccaatgttgaattgccaactactccattc 1577
Query: 438 ctgcaatgcagtttatctatcccacccaatgctctttgtagcgaaacctgaagcatgctt 497
||||| |||| ||||| | |||||| | ||||| | |||| || |||||||||||||||
Sbjct: 1576 ctgcagtgcaccttatcgaccccacctagtgctcgtcgtagtgagacctgaagcatgctt 1517
Query: 498 gcacgaagtggcttcataattacattcaagttatattccctgaatatatgtgaattgctc 557
|||||||| |||||||| |||||||||||||||| ||||||| || ||| |||| || |
Sbjct: 1516 gcacgaagcggcttcattattacattcaagttatgttccctggatgtatctgaaccgccc 1457
Query: 558 ttgacagaacttttagggttctccaaaagaaataactttgtagagtctggctgatacaat 617
||| ||||||| || | || |||||||||||||||| | ||||||||||| | || |
Sbjct: 1456 ttgggagaacttgcagagctccccaaaagaaataacttaggagagtctggcttgt-catt 1398
Query: 618 gttcctcaatttagtaaccaaaagaggcatggagtgggattctttcagccaggtttcttt 677
||||||||||| |||||| ||||||| || | |||||||| || ||||||||||| ||
Sbjct: 1397 attcctcaatttgttaaccagaagaggcgtgcaatgggattccttaagccaggtttcctt 1338
Query: 678 gtcaatgagcacaagctttgcaatctgtgatccacaattatttttagaaatatactgatc 737
||| || ||||| ||||||||| || |||||||| | || ||||||||| ||||||
Sbjct: 1337 gtctattagcactagctttgcagtcagtgatccagagtttaatttagaaatgaactgatt 1278
Query: 738 taggtcagttgtcaattcagtctgaactcccagtctttgcaaatgatacttagtaacctt 797
||| |||| ||||| ||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct: 1277 tagctcagctgtcagttcggtcttaactccaagtctttgcaagtgatacttggtaacctt 1218
>dbj|AK121135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077D19, full
insert sequence
Length = 4044
Score = 519 bits (262), Expect = e-145
Identities = 652/780 (83%), Gaps = 4/780 (0%)
Strand = Plus / Minus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 3412 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 3353
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
|||||||| || ||||| || ||||| |||||||||||| | ||| | | ||||||
Sbjct: 3352 ataacatccgccgtcatcgccaatataggagttcgccacctctgaatactagcacattct 3293
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatcctt 197
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3292 ggtggcgcctctccgcgttctattcgctcatttagatctctttccatcactctaatcctt 3233
Query: 198 tttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaa 257
| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3232 ctagtggcttcaaacccatccatttctggcatctgtatgtccatgaaacaagcatcaaaa 3173
Query: 258 ttgtgaggaggtttcagcagtgtgattgcttccttcccactgtcagcacaagttacttcc 317
||||| || ||||| |||| ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 3172 ttgtgcgggggttttagcaatgtgattgcttttttcccgctgtctgcacaagtaacttcg 3113
Query: 318 gcgccatatttctttagagcgcctgcagcaaccttgagatttacaatattatcatcaacc 377
|| ||||| ||||| ||||| | |||| ||||| || || || ||||| || || ||
Sbjct: 3112 gcaccatacttcttaagagcac---cagccaccttcaggttaacgatattgtcgtcgaca 3056
Query: 378 actatgattcgcttcttgtgaagaaggctgcccagtgttgaattgccgactactccattc 437
|| |||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 3055 acaatgatttgcttcttgtgaagaaggctgcccaatgttgaattgccaactactccattc 2996
Query: 438 ctgcaatgcagtttatctatcccacccaatgctctttgtagcgaaacctgaagcatgctt 497
||||| |||| ||||| | |||||| | ||||| | |||| || |||||||||||||||
Sbjct: 2995 ctgcagtgcaccttatcgaccccacctagtgctcgtcgtagtgagacctgaagcatgctt 2936
Query: 498 gcacgaagtggcttcataattacattcaagttatattccctgaatatatgtgaattgctc 557
|||||||| |||||||| |||||||||||||||| ||||||| || ||| |||| || |
Sbjct: 2935 gcacgaagcggcttcattattacattcaagttatgttccctggatgtatctgaaccgccc 2876
Query: 558 ttgacagaacttttagggttctccaaaagaaataactttgtagagtctggctgatacaat 617
||| ||||||| || | || |||||||||||||||| | ||||||||||| | || |
Sbjct: 2875 ttgggagaacttgcagagctccccaaaagaaataacttaggagagtctggcttgt-catt 2817
Query: 618 gttcctcaatttagtaaccaaaagaggcatggagtgggattctttcagccaggtttcttt 677
||||||||||| |||||| ||||||| || | |||||||| || ||||||||||| ||
Sbjct: 2816 attcctcaatttgttaaccagaagaggcgtgcaatgggattccttaagccaggtttcctt 2757
Query: 678 gtcaatgagcacaagctttgcaatctgtgatccacaattatttttagaaatatactgatc 737
||| || ||||| ||||||||| || |||||||| | || ||||||||| ||||||
Sbjct: 2756 gtctattagcactagctttgcagtcagtgatccagagtttaatttagaaatgaactgatt 2697
Query: 738 taggtcagttgtcaattcagtctgaactcccagtctttgcaaatgatacttagtaacctt 797
||| |||| ||||| ||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct: 2696 tagctcagctgtcagttcggtcttaactccaagtctttgcaagtgatacttggtaacctt 2637
>gb|AACV01002960.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002960, whole
genome shotgun sequence
Length = 37306
Score = 414 bits (209), Expect = e-113
Identities = 492/585 (84%), Gaps = 1/585 (0%)
Strand = Plus / Minus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttc 272
||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 16646 ccatccatttctggcatctgtatgtccatgaaacaagcatcaaaattgtgcgggggtttt 16587
Query: 273 agcagtgtgattgcttccttcccactgtcagcacaagttacttccgcgccatatttcttt 332
|||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||| |||||
Sbjct: 16586 agcaatgtgattgcttttttcccgctgtctgcacaagtaacttcggcaccatacttctta 16527
Query: 333 agagcgcctgcagcaaccttgagatttacaatattatcatcaaccactatgattcgcttc 392
||||| || ||||| ||||| || || || ||||| || || || || |||||| |||||
Sbjct: 16526 agagcaccagcagccaccttcaggttaacgatattgtcgtcgacaacaatgatttgcttc 16467
Query: 393 ttgtgaagaaggctgcccagtgttgaattgccgactactccattcctgcaatgcagttta 452
||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||
Sbjct: 16466 ttgtgaagaaggctgcccaatgttgaattgccaactactccattcctgcagtgcacctta 16407
Query: 453 tctatcccacccaatgctctttgtagcgaaacctgaagcatgcttgcacgaagtggcttc 512
|| | |||||| | ||||| | |||| || ||||||||||||||||||||||| ||||||
Sbjct: 16406 tcgaccccacctagtgctcgtcgtagtgagacctgaagcatgcttgcacgaagcggcttc 16347
Query: 513 ataattacattcaagttatattccctgaatatatgtgaattgctcttgacagaactttta 572
|| |||||||||||||||| ||||||| || ||| |||| || |||| ||||||| |
Sbjct: 16346 attattacattcaagttatgttccctggatgtatctgaaccgcccttgggagaacttgca 16287
Query: 573 gggttctccaaaagaaataactttgtagagtctggctgatacaatgttcctcaatttagt 632
| | || |||||||||||||||| | ||||||||||| | || | ||||||||||| |
Sbjct: 16286 gagctccccaaaagaaataacttaggagagtctggcttgt-cattattcctcaatttgtt 16228
Query: 633 aaccaaaagaggcatggagtgggattctttcagccaggtttctttgtcaatgagcacaag 692
||||| ||||||| || | |||||||| || ||||||||||| ||||| || ||||| ||
Sbjct: 16227 aaccagaagaggcgtgcaatgggattccttaagccaggtttccttgtctattagcactag 16168
Query: 693 ctttgcaatctgtgatccacaattatttttagaaatatactgatctaggtcagttgtcaa 752
||||||| || |||||||| | || ||||||||| |||||| ||| |||| |||||
Sbjct: 16167 ctttgcagtcagtgatccagagtttaatttagaaatgaactgatttagctcagctgtcag 16108
Query: 753 ttcagtctgaactcccagtctttgcaaatgatacttagtaacctt 797
||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct: 16107 ttcggtcttaactccaagtctttgcaagtgatacttggtaacctt 16063
Score = 139 bits (70), Expect = 3e-030
Identities = 163/194 (84%)
Strand = Plus / Minus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 16943 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 16884
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
||||||||||| ||||| || ||||| |||||||||||| | ||| | | ||||||
Sbjct: 16883 ataacatctgccgtcatcgccaatataggagttcgccacctctgaatactagcacattct 16824
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatcctt 197
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 16823 ggtggcgcctctccgcgttctattcgctcatttagatctctttccatcactctaatcctt 16764
Query: 198 tttgtggcttcaaa 211
| |||||||||||
Sbjct: 16763 ctagtggcttcaaa 16750
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 414 bits (209), Expect = e-113
Identities = 492/585 (84%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttc 272
||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 40478307 ccatccatttctggcatctgtatgtccatgaaacaagcatcaaaattgtgcgggggtttt 40478366
Query: 273 agcagtgtgattgcttccttcccactgtcagcacaagttacttccgcgccatatttcttt 332
|||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||| |||||
Sbjct: 40478367 agcaatgtgattgcttttttcccgctgtctgcacaagtaacttcggcaccatacttctta 40478426
Query: 333 agagcgcctgcagcaaccttgagatttacaatattatcatcaaccactatgattcgcttc 392
||||| || ||||| ||||| || || || ||||| || || || || |||||| |||||
Sbjct: 40478427 agagcaccagcagccaccttcaggttaacgatattgtcgtcgacaacaatgatttgcttc 40478486
Query: 393 ttgtgaagaaggctgcccagtgttgaattgccgactactccattcctgcaatgcagttta 452
||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||
Sbjct: 40478487 ttgtgaagaaggctgcccaatgttgaattgccaactactccattcctgcagtgcacctta 40478546
Query: 453 tctatcccacccaatgctctttgtagcgaaacctgaagcatgcttgcacgaagtggcttc 512
|| | |||||| | ||||| | |||| || ||||||||||||||||||||||| ||||||
Sbjct: 40478547 tcgaccccacctagtgctcgtcgtagtgagacctgaagcatgcttgcacgaagcggcttc 40478606
Query: 513 ataattacattcaagttatattccctgaatatatgtgaattgctcttgacagaactttta 572
|| |||||||||||||||| ||||||| || ||| |||| || |||| ||||||| |
Sbjct: 40478607 attattacattcaagttatgttccctggatgtatctgaaccgcccttgggagaacttgca 40478666
Query: 573 gggttctccaaaagaaataactttgtagagtctggctgatacaatgttcctcaatttagt 632
| | || |||||||||||||||| | ||||||||||| | || | ||||||||||| |
Sbjct: 40478667 gagctccccaaaagaaataacttaggagagtctggcttgt-cattattcctcaatttgtt 40478725
Query: 633 aaccaaaagaggcatggagtgggattctttcagccaggtttctttgtcaatgagcacaag 692
||||| ||||||| || | |||||||| || ||||||||||| ||||| || ||||| ||
Sbjct: 40478726 aaccagaagaggcgtgcaatgggattccttaagccaggtttccttgtctattagcactag 40478785
Query: 693 ctttgcaatctgtgatccacaattatttttagaaatatactgatctaggtcagttgtcaa 752
||||||| || |||||||| | || ||||||||| |||||| ||| |||| |||||
Sbjct: 40478786 ctttgcagtcagtgatccagagtttaatttagaaatgaactgatttagctcagctgtcag 40478845
Query: 753 ttcagtctgaactcccagtctttgcaaatgatacttagtaacctt 797
||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct: 40478846 ttcggtcttaactccaagtctttgcaagtgatacttggtaacctt 40478890
Score = 139 bits (70), Expect = 3e-030
Identities = 163/194 (84%)
Strand = Plus / Plus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 40478010 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 40478069
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
||||||||||| ||||| || ||||| |||||||||||| | ||| | | ||||||
Sbjct: 40478070 ataacatctgccgtcatcgccaatataggagttcgccacctctgaatactagcacattct 40478129
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatcctt 197
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 40478130 ggtggcgcctctccgcgttctattcgctcatttagatctctttccatcactctaatcctt 40478189
Query: 198 tttgtggcttcaaa 211
| |||||||||||
Sbjct: 40478190 ctagtggcttcaaa 40478203
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 414 bits (209), Expect = e-113
Identities = 492/585 (84%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttc 272
||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 106601 ccatccatttctggcatctgtatgtccatgaaacaagcatcaaaattgtgcgggggtttt 106660
Query: 273 agcagtgtgattgcttccttcccactgtcagcacaagttacttccgcgccatatttcttt 332
|||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||| |||||
Sbjct: 106661 agcaatgtgattgcttttttcccgctgtctgcacaagtaacttcggcaccatacttctta 106720
Query: 333 agagcgcctgcagcaaccttgagatttacaatattatcatcaaccactatgattcgcttc 392
||||| || ||||| ||||| || || || ||||| || || || || |||||| |||||
Sbjct: 106721 agagcaccagcagccaccttcaggttaacgatattgtcgtcgacaacaatgatttgcttc 106780
Query: 393 ttgtgaagaaggctgcccagtgttgaattgccgactactccattcctgcaatgcagttta 452
||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||
Sbjct: 106781 ttgtgaagaaggctgcccaatgttgaattgccaactactccattcctgcagtgcacctta 106840
Query: 453 tctatcccacccaatgctctttgtagcgaaacctgaagcatgcttgcacgaagtggcttc 512
|| | |||||| | ||||| | |||| || ||||||||||||||||||||||| ||||||
Sbjct: 106841 tcgaccccacctagtgctcgtcgtagtgagacctgaagcatgcttgcacgaagcggcttc 106900
Query: 513 ataattacattcaagttatattccctgaatatatgtgaattgctcttgacagaactttta 572
|| |||||||||||||||| ||||||| || ||| |||| || |||| ||||||| |
Sbjct: 106901 attattacattcaagttatgttccctggatgtatctgaaccgcccttgggagaacttgca 106960
Query: 573 gggttctccaaaagaaataactttgtagagtctggctgatacaatgttcctcaatttagt 632
| | || |||||||||||||||| | ||||||||||| | || | ||||||||||| |
Sbjct: 106961 gagctccccaaaagaaataacttaggagagtctggcttgt-cattattcctcaatttgtt 107019
Query: 633 aaccaaaagaggcatggagtgggattctttcagccaggtttctttgtcaatgagcacaag 692
||||| ||||||| || | |||||||| || ||||||||||| ||||| || ||||| ||
Sbjct: 107020 aaccagaagaggcgtgcaatgggattccttaagccaggtttccttgtctattagcactag 107079
Query: 693 ctttgcaatctgtgatccacaattatttttagaaatatactgatctaggtcagttgtcaa 752
||||||| || |||||||| | || ||||||||| |||||| ||| |||| |||||
Sbjct: 107080 ctttgcagtcagtgatccagagtttaatttagaaatgaactgatttagctcagctgtcag 107139
Query: 753 ttcagtctgaactcccagtctttgcaaatgatacttagtaacctt 797
||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct: 107140 ttcggtcttaactccaagtctttgcaagtgatacttggtaacctt 107184
Score = 139 bits (70), Expect = 3e-030
Identities = 163/194 (84%)
Strand = Plus / Plus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 106304 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 106363
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
||||||||||| ||||| || ||||| |||||||||||| | ||| | | ||||||
Sbjct: 106364 ataacatctgccgtcatcgccaatataggagttcgccacctctgaatactagcacattct 106423
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatcctt 197
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 106424 ggtggcgcctctccgcgttctattcgctcatttagatctctttccatcactctaatcctt 106483
Query: 198 tttgtggcttcaaa 211
| |||||||||||
Sbjct: 106484 ctagtggcttcaaa 106497
>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0592G05
Length = 146220
Score = 414 bits (209), Expect = e-113
Identities = 492/585 (84%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttc 272
||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 48878 ccatccatttctggcatctgtatgtccatgaaacaagcatcaaaattgtgcgggggtttt 48937
Query: 273 agcagtgtgattgcttccttcccactgtcagcacaagttacttccgcgccatatttcttt 332
|||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||| |||||
Sbjct: 48938 agcaatgtgattgcttttttcccgctgtctgcacaagtaacttcggcaccatacttctta 48997
Query: 333 agagcgcctgcagcaaccttgagatttacaatattatcatcaaccactatgattcgcttc 392
||||| || ||||| ||||| || || || ||||| || || || || |||||| |||||
Sbjct: 48998 agagcaccagcagccaccttcaggttaacgatattgtcgtcgacaacaatgatttgcttc 49057
Query: 393 ttgtgaagaaggctgcccagtgttgaattgccgactactccattcctgcaatgcagttta 452
||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||
Sbjct: 49058 ttgtgaagaaggctgcccaatgttgaattgccaactactccattcctgcagtgcacctta 49117
Query: 453 tctatcccacccaatgctctttgtagcgaaacctgaagcatgcttgcacgaagtggcttc 512
|| | |||||| | ||||| | |||| || ||||||||||||||||||||||| ||||||
Sbjct: 49118 tcgaccccacctagtgctcgtcgtagtgagacctgaagcatgcttgcacgaagcggcttc 49177
Query: 513 ataattacattcaagttatattccctgaatatatgtgaattgctcttgacagaactttta 572
|| |||||||||||||||| ||||||| || ||| |||| || |||| ||||||| |
Sbjct: 49178 attattacattcaagttatgttccctggatgtatctgaaccgcccttgggagaacttgca 49237
Query: 573 gggttctccaaaagaaataactttgtagagtctggctgatacaatgttcctcaatttagt 632
| | || |||||||||||||||| | ||||||||||| | || | ||||||||||| |
Sbjct: 49238 gagctccccaaaagaaataacttaggagagtctggcttgt-cattattcctcaatttgtt 49296
Query: 633 aaccaaaagaggcatggagtgggattctttcagccaggtttctttgtcaatgagcacaag 692
||||| ||||||| || | |||||||| || ||||||||||| ||||| || ||||| ||
Sbjct: 49297 aaccagaagaggcgtgcaatgggattccttaagccaggtttccttgtctattagcactag 49356
Query: 693 ctttgcaatctgtgatccacaattatttttagaaatatactgatctaggtcagttgtcaa 752
||||||| || |||||||| | || ||||||||| |||||| ||| |||| |||||
Sbjct: 49357 ctttgcagtcagtgatccagagtttaatttagaaatgaactgatttagctcagctgtcag 49416
Query: 753 ttcagtctgaactcccagtctttgcaaatgatacttagtaacctt 797
||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct: 49417 ttcggtcttaactccaagtctttgcaagtgatacttggtaacctt 49461
Score = 139 bits (70), Expect = 3e-030
Identities = 163/194 (84%)
Strand = Plus / Plus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 48581 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 48640
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
||||||||||| ||||| || ||||| |||||||||||| | ||| | | ||||||
Sbjct: 48641 ataacatctgccgtcatcgccaatataggagttcgccacctctgaatactagcacattct 48700
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatcctt 197
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 48701 ggtggcgcctctccgcgttctattcgctcatttagatctctttccatcactctaatcctt 48760
Query: 198 tttgtggcttcaaa 211
| |||||||||||
Sbjct: 48761 ctagtggcttcaaa 48774
>dbj|AP006167.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1455F06
Length = 140848
Score = 414 bits (209), Expect = e-113
Identities = 492/585 (84%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttc 272
||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 106601 ccatccatttctggcatctgtatgtccatgaaacaagcatcaaaattgtgcgggggtttt 106660
Query: 273 agcagtgtgattgcttccttcccactgtcagcacaagttacttccgcgccatatttcttt 332
|||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||| |||||
Sbjct: 106661 agcaatgtgattgcttttttcccgctgtctgcacaagtaacttcggcaccatacttctta 106720
Query: 333 agagcgcctgcagcaaccttgagatttacaatattatcatcaaccactatgattcgcttc 392
||||| || ||||| ||||| || || || ||||| || || || || |||||| |||||
Sbjct: 106721 agagcaccagcagccaccttcaggttaacgatattgtcgtcgacaacaatgatttgcttc 106780
Query: 393 ttgtgaagaaggctgcccagtgttgaattgccgactactccattcctgcaatgcagttta 452
||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||
Sbjct: 106781 ttgtgaagaaggctgcccaatgttgaattgccaactactccattcctgcagtgcacctta 106840
Query: 453 tctatcccacccaatgctctttgtagcgaaacctgaagcatgcttgcacgaagtggcttc 512
|| | |||||| | ||||| | |||| || ||||||||||||||||||||||| ||||||
Sbjct: 106841 tcgaccccacctagtgctcgtcgtagtgagacctgaagcatgcttgcacgaagcggcttc 106900
Query: 513 ataattacattcaagttatattccctgaatatatgtgaattgctcttgacagaactttta 572
|| |||||||||||||||| ||||||| || ||| |||| || |||| ||||||| |
Sbjct: 106901 attattacattcaagttatgttccctggatgtatctgaaccgcccttgggagaacttgca 106960
Query: 573 gggttctccaaaagaaataactttgtagagtctggctgatacaatgttcctcaatttagt 632
| | || |||||||||||||||| | ||||||||||| | || | ||||||||||| |
Sbjct: 106961 gagctccccaaaagaaataacttaggagagtctggcttgt-cattattcctcaatttgtt 107019
Query: 633 aaccaaaagaggcatggagtgggattctttcagccaggtttctttgtcaatgagcacaag 692
||||| ||||||| || | |||||||| || ||||||||||| ||||| || ||||| ||
Sbjct: 107020 aaccagaagaggcgtgcaatgggattccttaagccaggtttccttgtctattagcactag 107079
Query: 693 ctttgcaatctgtgatccacaattatttttagaaatatactgatctaggtcagttgtcaa 752
||||||| || |||||||| | || ||||||||| |||||| ||| |||| |||||
Sbjct: 107080 ctttgcagtcagtgatccagagtttaatttagaaatgaactgatttagctcagctgtcag 107139
Query: 753 ttcagtctgaactcccagtctttgcaaatgatacttagtaacctt 797
||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct: 107140 ttcggtcttaactccaagtctttgcaagtgatacttggtaacctt 107184
Score = 139 bits (70), Expect = 3e-030
Identities = 163/194 (84%)
Strand = Plus / Plus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 106304 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 106363
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
||||||||||| ||||| || ||||| |||||||||||| | ||| | | ||||||
Sbjct: 106364 ataacatctgccgtcatcgccaatataggagttcgccacctctgaatactagcacattct 106423
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatcctt 197
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 106424 ggtggcgcctctccgcgttctattcgctcatttagatctctttccatcactctaatcctt 106483
Query: 198 tttgtggcttcaaa 211
| |||||||||||
Sbjct: 106484 ctagtggcttcaaa 106497
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 414 bits (209), Expect = e-113
Identities = 492/585 (84%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttc 272
||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 14680801 ccatccatttctggcatctgtatgtccatgaaacaagcatcaaaattgtgcgggggtttt 14680860
Query: 273 agcagtgtgattgcttccttcccactgtcagcacaagttacttccgcgccatatttcttt 332
|||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||| |||||
Sbjct: 14680861 agcaatgtgattgcttttttcccgctgtctgcacaagtaacttcggcaccatacttctta 14680920
Query: 333 agagcgcctgcagcaaccttgagatttacaatattatcatcaaccactatgattcgcttc 392
||||| || ||||| ||||| || || || ||||| || || || || |||||| |||||
Sbjct: 14680921 agagcaccagcagccaccttcaggttaacgatattgtcgtcgacaacaatgatttgcttc 14680980
Query: 393 ttgtgaagaaggctgcccagtgttgaattgccgactactccattcctgcaatgcagttta 452
||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||
Sbjct: 14680981 ttgtgaagaaggctgcccaatgttgaattgccaactactccattcctgcagtgcacctta 14681040
Query: 453 tctatcccacccaatgctctttgtagcgaaacctgaagcatgcttgcacgaagtggcttc 512
|| | |||||| | ||||| | |||| || ||||||||||||||||||||||| ||||||
Sbjct: 14681041 tcgaccccacctagtgctcgtcgtagtgagacctgaagcatgcttgcacgaagcggcttc 14681100
Query: 513 ataattacattcaagttatattccctgaatatatgtgaattgctcttgacagaactttta 572
|| |||||||||||||||| ||||||| || ||| |||| || |||| ||||||| |
Sbjct: 14681101 attattacattcaagttatgttccctggatgtatctgaaccgcccttgggagaacttgca 14681160
Query: 573 gggttctccaaaagaaataactttgtagagtctggctgatacaatgttcctcaatttagt 632
| | || |||||||||||||||| | ||||||||||| | || | ||||||||||| |
Sbjct: 14681161 gagctccccaaaagaaataacttaggagagtctggcttgt-cattattcctcaatttgtt 14681219
Query: 633 aaccaaaagaggcatggagtgggattctttcagccaggtttctttgtcaatgagcacaag 692
||||| ||||||| || | |||||||| || ||||||||||| ||||| || ||||| ||
Sbjct: 14681220 aaccagaagaggcgtgcaatgggattccttaagccaggtttccttgtctattagcactag 14681279
Query: 693 ctttgcaatctgtgatccacaattatttttagaaatatactgatctaggtcagttgtcaa 752
||||||| || |||||||| | || ||||||||| |||||| ||| |||| |||||
Sbjct: 14681280 ctttgcagtcagtgatccagagtttaatttagaaatgaactgatttagctcagctgtcag 14681339
Query: 753 ttcagtctgaactcccagtctttgcaaatgatacttagtaacctt 797
||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct: 14681340 ttcggtcttaactccaagtctttgcaagtgatacttggtaacctt 14681384
Score = 139 bits (70), Expect = 3e-030
Identities = 163/194 (84%)
Strand = Plus / Plus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 14680504 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 14680563
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
||||||||||| ||||| || ||||| |||||||||||| | ||| | | ||||||
Sbjct: 14680564 ataacatctgccgtcatcgccaatataggagttcgccacctctgaatactagcacattct 14680623
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatcctt 197
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14680624 ggtggcgcctctccgcgttctattcgctcatttagatctctttccatcactctaatcctt 14680683
Query: 198 tttgtggcttcaaa 211
| |||||||||||
Sbjct: 14680684 ctagtggcttcaaa 14680697
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 414 bits (209), Expect = e-113
Identities = 492/585 (84%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttc 272
||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 39882522 ccatccatttctggcatctgtatgtccatgaaacaagcatcaaaattgtgcgggggtttt 39882581
Query: 273 agcagtgtgattgcttccttcccactgtcagcacaagttacttccgcgccatatttcttt 332
|||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||| |||||
Sbjct: 39882582 agcaatgtgattgcttttttcccgctgtctgcacaagtaacttcggcaccatacttctta 39882641
Query: 333 agagcgcctgcagcaaccttgagatttacaatattatcatcaaccactatgattcgcttc 392
||||| || ||||| ||||| || || || ||||| || || || || |||||| |||||
Sbjct: 39882642 agagcaccagcagccaccttcaggttaacgatattgtcgtcgacaacaatgatttgcttc 39882701
Query: 393 ttgtgaagaaggctgcccagtgttgaattgccgactactccattcctgcaatgcagttta 452
||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||
Sbjct: 39882702 ttgtgaagaaggctgcccaatgttgaattgccaactactccattcctgcagtgcacctta 39882761
Query: 453 tctatcccacccaatgctctttgtagcgaaacctgaagcatgcttgcacgaagtggcttc 512
|| | |||||| | ||||| | |||| || ||||||||||||||||||||||| ||||||
Sbjct: 39882762 tcgaccccacctagtgctcgtcgtagtgagacctgaagcatgcttgcacgaagcggcttc 39882821
Query: 513 ataattacattcaagttatattccctgaatatatgtgaattgctcttgacagaactttta 572
|| |||||||||||||||| ||||||| || ||| |||| || |||| ||||||| |
Sbjct: 39882822 attattacattcaagttatgttccctggatgtatctgaaccgcccttgggagaacttgca 39882881
Query: 573 gggttctccaaaagaaataactttgtagagtctggctgatacaatgttcctcaatttagt 632
| | || |||||||||||||||| | ||||||||||| | || | ||||||||||| |
Sbjct: 39882882 gagctccccaaaagaaataacttaggagagtctggcttgt-cattattcctcaatttgtt 39882940
Query: 633 aaccaaaagaggcatggagtgggattctttcagccaggtttctttgtcaatgagcacaag 692
||||| ||||||| || | |||||||| || ||||||||||| ||||| || ||||| ||
Sbjct: 39882941 aaccagaagaggcgtgcaatgggattccttaagccaggtttccttgtctattagcactag 39883000
Query: 693 ctttgcaatctgtgatccacaattatttttagaaatatactgatctaggtcagttgtcaa 752
||||||| || |||||||| | || ||||||||| |||||| ||| |||| |||||
Sbjct: 39883001 ctttgcagtcagtgatccagagtttaatttagaaatgaactgatttagctcagctgtcag 39883060
Query: 753 ttcagtctgaactcccagtctttgcaaatgatacttagtaacctt 797
||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct: 39883061 ttcggtcttaactccaagtctttgcaagtgatacttggtaacctt 39883105
Score = 139 bits (70), Expect = 3e-030
Identities = 163/194 (84%)
Strand = Plus / Plus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 39882225 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 39882284
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
||||||||||| ||||| || ||||| |||||||||||| | ||| | | ||||||
Sbjct: 39882285 ataacatctgccgtcatcgccaatataggagttcgccacctctgaatactagcacattct 39882344
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatcctt 197
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 39882345 ggtggcgcctctccgcgttctattcgctcatttagatctctttccatcactctaatcctt 39882404
Query: 198 tttgtggcttcaaa 211
| |||||||||||
Sbjct: 39882405 ctagtggcttcaaa 39882418
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 414 bits (209), Expect = e-113
Identities = 492/585 (84%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttc 272
||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 40397637 ccatccatttctggcatctgtatgtccatgaaacaagcatcaaaattgtgcgggggtttt 40397696
Query: 273 agcagtgtgattgcttccttcccactgtcagcacaagttacttccgcgccatatttcttt 332
|||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||| |||||
Sbjct: 40397697 agcaatgtgattgcttttttcccgctgtctgcacaagtaacttcggcaccatacttctta 40397756
Query: 333 agagcgcctgcagcaaccttgagatttacaatattatcatcaaccactatgattcgcttc 392
||||| || ||||| ||||| || || || ||||| || || || || |||||| |||||
Sbjct: 40397757 agagcaccagcagccaccttcaggttaacgatattgtcgtcgacaacaatgatttgcttc 40397816
Query: 393 ttgtgaagaaggctgcccagtgttgaattgccgactactccattcctgcaatgcagttta 452
||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||
Sbjct: 40397817 ttgtgaagaaggctgcccaatgttgaattgccaactactccattcctgcagtgcacctta 40397876
Query: 453 tctatcccacccaatgctctttgtagcgaaacctgaagcatgcttgcacgaagtggcttc 512
|| | |||||| | ||||| | |||| || ||||||||||||||||||||||| ||||||
Sbjct: 40397877 tcgaccccacctagtgctcgtcgtagtgagacctgaagcatgcttgcacgaagcggcttc 40397936
Query: 513 ataattacattcaagttatattccctgaatatatgtgaattgctcttgacagaactttta 572
|| |||||||||||||||| ||||||| || ||| |||| || |||| ||||||| |
Sbjct: 40397937 attattacattcaagttatgttccctggatgtatctgaaccgcccttgggagaacttgca 40397996
Query: 573 gggttctccaaaagaaataactttgtagagtctggctgatacaatgttcctcaatttagt 632
| | || |||||||||||||||| | ||||||||||| | || | ||||||||||| |
Sbjct: 40397997 gagctccccaaaagaaataacttaggagagtctggcttgt-cattattcctcaatttgtt 40398055
Query: 633 aaccaaaagaggcatggagtgggattctttcagccaggtttctttgtcaatgagcacaag 692
||||| ||||||| || | |||||||| || ||||||||||| ||||| || ||||| ||
Sbjct: 40398056 aaccagaagaggcgtgcaatgggattccttaagccaggtttccttgtctattagcactag 40398115
Query: 693 ctttgcaatctgtgatccacaattatttttagaaatatactgatctaggtcagttgtcaa 752
||||||| || |||||||| | || ||||||||| |||||| ||| |||| |||||
Sbjct: 40398116 ctttgcagtcagtgatccagagtttaatttagaaatgaactgatttagctcagctgtcag 40398175
Query: 753 ttcagtctgaactcccagtctttgcaaatgatacttagtaacctt 797
||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct: 40398176 ttcggtcttaactccaagtctttgcaagtgatacttggtaacctt 40398220
Score = 139 bits (70), Expect = 3e-030
Identities = 163/194 (84%)
Strand = Plus / Plus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 40397340 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 40397399
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
||||||||||| ||||| || ||||| |||||||||||| | ||| | | ||||||
Sbjct: 40397400 ataacatctgccgtcatcgccaatataggagttcgccacctctgaatactagcacattct 40397459
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatcctt 197
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 40397460 ggtggcgcctctccgcgttctattcgctcatttagatctctttccatcactctaatcctt 40397519
Query: 198 tttgtggcttcaaa 211
| |||||||||||
Sbjct: 40397520 ctagtggcttcaaa 40397533
>gb|CB678613.1|CB678613 OSJNEe16O18.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe16O18 5', mRNA sequence
Length = 770
Score = 331 bits (167), Expect = 3e-088
Identities = 441/531 (83%), Gaps = 1/531 (0%)
Strand = Plus / Minus
Query: 267 ggtttcagcagtgtgattgcttccttcccactgtcagcacaagttacttccgcgccatat 326
||||| |||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||
Sbjct: 762 ggttttagcaatgtgattgcttttttcccgctgtctgcacaagtaacttcggcaccatac 703
Query: 327 ttctttagagcgcctgcagcaaccttgagatttacaatattatcatcaaccactatgatt 386
||||| ||||| || ||||| ||||| || || || ||||| || || || || ||||||
Sbjct: 702 ttcttaagagcaccagcagccaccttcaggttaacgatattgtcgtcgacaacaatgatt 643
Query: 387 cgcttcttgtgaagaaggctgcccagtgttgaattgccgactactccattcctgcaatgc 446
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct: 642 tgcttcttgtgaagaaggctgcccaatgttgaattgccaactactccattcctgcagtgc 583
Query: 447 agtttatctatcccacccaatgctctttgtagcgaaacctgaagcatgcttgcacgaagt 506
| ||||| | |||||| | ||||| | |||| || |||||||||||||||||||||||
Sbjct: 582 accttatcgaccccacctagtgctcgtcgtagtgagacctgaagcatgcttgcacgaagc 523
Query: 507 ggcttcataattacattcaagttatattccctgaatatatgtgaattgctcttgacagaa 566
|||||||| |||||||||||||||| ||||||| || ||| |||| || |||| ||||
Sbjct: 522 ggcttcattattacattcaagttatgttccctggatgtatctgaaccgcccttgggagaa 463
Query: 567 cttttagggttctccaaaagaaataactttgtagagtctggctgatacaatgttcctcaa 626
||| || | || |||||||||||||||| | ||||||||||| | || | ||||||||
Sbjct: 462 cttgcagagctccccaaaagaaataacttaggagagtctggcttgt-cattattcctcaa 404
Query: 627 tttagtaaccaaaagaggcatggagtgggattctttcagccaggtttctttgtcaatgag 686
||| |||||| ||||||| || | |||||||| || ||||||||||| ||||| || ||
Sbjct: 403 tttgttaaccagaagaggcgtgcaatgggattccttaagccaggtttccttgtctattag 344
Query: 687 cacaagctttgcaatctgtgatccacaattatttttagaaatatactgatctaggtcagt 746
||| ||||||||| || |||||||| | || ||||||||| |||||| ||| ||||
Sbjct: 343 cactagctttgcagtcagtgatccagagtttaatttagaaatgaactgatttagctcagc 284
Query: 747 tgtcaattcagtctgaactcccagtctttgcaaatgatacttagtaacctt 797
||||| ||| |||| |||||| ||||||||||| |||||||| ||||||||
Sbjct: 283 tgtcagttcggtcttaactccaagtctttgcaagtgatacttggtaacctt 233
>gb|D24949.1|D24949 RICR2833A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2833_1A, mRNA sequence
Length = 404
Score = 165 bits (83), Expect = 5e-038
Identities = 182/215 (84%)
Strand = Plus / Minus
Query: 19 atggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgga 78
|||||||||| ||||| ||||||||||| ||||| ||| | || ||||| ||||| |
Sbjct: 215 atggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgta 156
Query: 79 taacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattctg 138
|||||||||| ||||| || ||||| |||||||||||| | ||| | | |||||||
Sbjct: 155 taacatctgccgtcatcgccaatataggagttcgccacctctgaatactagcacattctg 96
Query: 139 gtggggcttctccacgttctatttgctcatttagatctctttccatcactctaatccttt 198
|||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 95 gtggcgcctctccgcgttctattcgctcatttagatctctttccatcactctaatccttc 36
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgt 233
| ||||||||||| ||||||||||| |||||||||
Sbjct: 35 tagtggcttcaaacccatccatttctggcatctgt 1
>gb|CB649580.1|CB649580 OSJNEb13J09.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13J09 3', mRNA sequence
Length = 848
Score = 111 bits (56), Expect = 6e-022
Identities = 143/172 (83%)
Strand = Plus / Plus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 677 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 736
Query: 78 ataacatctgctgtcatggctaatattggagttcgccactgccgaacccctacgcattct 137
||||||||||| ||||| || ||||| |||||||||||| | ||| | | ||||||
Sbjct: 737 ataacatctgccgtcatcgccaatataggagttcgccacctctgaatactagcacattct 796
Query: 138 ggtggggcttctccacgttctatttgctcatttagatctctttccatcactc 189
||||| || ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 797 ggtggcgcctctccgcgttctattcgctcatttagatctctttccatcactc 848
>gb|AU064044.1|AU064044 AU064044 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3529_1A, mRNA sequence
Length = 461
Score = 97.6 bits (49), Expect = 9e-018
Identities = 58/61 (95%)
Strand = Plus / Minus
Query: 163 gctcatttagatctctttccatcactctaatcctttttgtggcttcaaatccatccattt 222
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 65 gctcatttagatctctttccatcactctaatccttctagtggcttcaaacccatccattt 6
Query: 223 c 223
|
Sbjct: 5 c 5
Score = 63.9 bits (32), Expect = 1e-007
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 159 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 100
Query: 78 ataacatctgctgtcatggctaatattggagttcgc 113
||||||||||| ||||| || ||||| |||||||||
Sbjct: 99 ataacatctgccgtcatcgccaatataggagttcgc 64
>gb|AU064899.1|AU064899 AU064899 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E40763_1A, mRNA sequence
Length = 460
Score = 97.6 bits (49), Expect = 9e-018
Identities = 58/61 (95%)
Strand = Plus / Minus
Query: 163 gctcatttagatctctttccatcactctaatcctttttgtggcttcaaatccatccattt 222
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 65 gctcatttagatctctttccatcactctaatccttctagtggcttcaaacccatccattt 6
Query: 223 c 223
|
Sbjct: 5 c 5
Score = 63.9 bits (32), Expect = 1e-007
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 159 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 100
Query: 78 ataacatctgctgtcatggctaatattggagttcgc 113
||||||||||| ||||| || ||||| |||||||||
Sbjct: 99 ataacatctgccgtcatcgccaatataggagttcgc 64
>gb|AU094972.1|AU094972 AU094972 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E41254, mRNA sequence
Length = 414
Score = 97.6 bits (49), Expect = 9e-018
Identities = 58/61 (95%)
Strand = Plus / Minus
Query: 163 gctcatttagatctctttccatcactctaatcctttttgtggcttcaaatccatccattt 222
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 65 gctcatttagatctctttccatcactctaatccttctagtggcttcaaacccatccattt 6
Query: 223 c 223
|
Sbjct: 5 c 5
Score = 63.9 bits (32), Expect = 1e-007
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 159 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 100
Query: 78 ataacatctgctgtcatggctaatattggagttcgc 113
||||||||||| ||||| || ||||| |||||||||
Sbjct: 99 ataacatctgccgtcatcgccaatataggagttcgc 64
>gb|CB678614.1|CB678614 OSJNEe16O18.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe16O18 3', mRNA sequence
Length = 791
Score = 69.9 bits (35), Expect = 2e-009
Identities = 83/99 (83%)
Strand = Plus / Plus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||| ||||| ||||||||||| ||||| ||| | || ||||| |||||
Sbjct: 642 aatggcttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgt 701
Query: 78 ataacatctgctgtcatggctaatattggagttcgccac 116
||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 702 ataacatctgccgtcatcgccaatataggagttcgccac 740
>gb|D22220.1|D22220 RICC10521A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10521_1A, mRNA sequence
Length = 356
Score = 67.9 bits (34), Expect = 8e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 720 tttagaaatatactgatctaggtcagttgtcaattcagtctgaactcccagtctttgcaa 779
||||||||| |||||| ||| |||| ||||| ||| |||| |||||| |||||||||||
Sbjct: 329 tttagaaatgaactgatttagctcagctgtcagttcggtcttaactccaagtctttgcaa 270
Query: 780 atgatacttagtaacctt 797
|||||||| ||||||||
Sbjct: 269 gtgatacttggtaacctt 252
>gb|D47151.1|D47151 RICS12303A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 439
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 204 gcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtga 263
|||||||| |||||||| ||||||||||| | ||||| |||||||||||||| || |||
Sbjct: 144 gcttcaaacccatccatctcaggcatctgaacatccataaaacaagcatcaaatttatga 85
Query: 264 gg 265
||
Sbjct: 84 gg 83
>gb|CB676673.1|CB676673 OSJNEe13A19.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe13A19 5', mRNA sequence
Length = 714
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 204 gcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtga 263
|||||||| |||||||| ||||||||||| | ||||| |||||||||||||| || |||
Sbjct: 635 gcttcaaacccatccatctcaggcatctgaacatccataaaacaagcatcaaatttatga 576
Query: 264 gg 265
||
Sbjct: 575 gg 574
>ref|NM_196042.1| Oryza sativa (japonica cultivar-group) putative histidine kinase
(OSJNBa0073L01.1), mRNA
Length = 3161
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 204 gcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtga 263
|||||||| |||||||| ||||||||||| | ||||| |||||||||||||| || |||
Sbjct: 2570 gcttcaaacccatccatctcaggcatctgaacatccataaaacaagcatcaaatttatga 2511
Query: 264 gg 265
||
Sbjct: 2510 gg 2509
>gb|D47801.1|D47801 RICS13496A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 406
Score = 56.0 bits (28), Expect = 3e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 204 gcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtga 263
|||||||| |||||||| ||||||||||| | ||||| |||||||||| ||| || |||
Sbjct: 144 gcttcaaacccatccatntcaggcatctgaacatccataaaacaagcatnaaatttatga 85
Query: 264 gg 265
||
Sbjct: 84 gg 83
>dbj|AK121000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044K19, full
insert sequence
Length = 4802
Score = 52.0 bits (26), Expect = 5e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 204 gcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtga 263
|||||||| |||||||| ||| ||||||| | ||||| |||||||||||||| || |||
Sbjct: 3956 gcttcaaacccatccatctcaagcatctgaacatccataaaacaagcatcaaatttatga 3897
Query: 264 gg 265
||
Sbjct: 3896 gg 3895
>dbj|AK060709.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H10, full
insert sequence
Length = 1432
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 207 tcaaatccatccatttcaggcatctgtatgtccatga 243
|||||||||||||| || |||||||| ||||||||||
Sbjct: 618 tcaaatccatccatctccggcatctgaatgtccatga 582
>gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L01 genomic sequence,
complete sequence
Length = 179199
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
|||||||| ||||||||||| | ||||| |||||||||||||| || |||||
Sbjct: 9462 ccatccatctcaggcatctgaacatccataaaacaagcatcaaatttatgagg 9514
>gb|AACV01021333.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021333, whole
genome shotgun sequence
Length = 43761
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
|||||||| ||||||||||| | ||||| |||||||||||||| || |||||
Sbjct: 19912 ccatccatctcaggcatctgaacatccataaaacaagcatcaaatttatgagg 19964
>ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2206062
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
|||||||| ||||||||||| | ||||| |||||||||||||| || |||||
Sbjct: 1312190 ccatccatctcaggcatctgaacatccataaaacaagcatcaaatttatgagg 1312242
>ref|XM_469566.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3042
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 207 tcaaatccatccatttcaggcatctgtatgtccatga 243
|||||||||||||| || |||||||| ||||||||||
Sbjct: 2789 tcaaatccatccatctccggcatctgaatgtccatga 2753
>gb|CH401253.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000090 genomic
scaffold, whole genome shotgun sequence
Length = 2475376
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
|||||||| ||||||||||| | ||||| |||||||||||||| || |||||
Sbjct: 1496586 ccatccatctcaggcatctgaacatccataaaacaagcatcaaatttatgagg 1496638
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
|||||||| ||||||||||| | ||||| |||||||||||||| || |||||
Sbjct: 9886904 ccatccatctcaggcatctgaacatccataaaacaagcatcaaatttatgagg 9886956
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
|||||||| ||||||||||| | ||||| |||||||||||||| || |||||
Sbjct: 10678694 ccatccatctcaggcatctgaacatccataaaacaagcatcaaatttatgagg 10678746
>gb|AC083945.3| Oryza sativa (japonica cultivar-group) chromosome X clone
OSJNBa0058E19, complete sequence
Length = 147706
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
|||||||| ||||||||||| | ||||| |||||||||||||| || |||||
Sbjct: 2157 ccatccatctcaggcatctgaacatccataaaacaagcatcaaatttatgagg 2105
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
|||||||| ||||||||||| | ||||| |||||||||||||| || |||||
Sbjct: 10684733 ccatccatctcaggcatctgaacatccataaaacaagcatcaaatttatgagg 10684785
>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0684F11
Length = 147731
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 15 tcgaatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcc 74
||||| || ||||| ||||||||||||||| | ||||| | |||| ||||| |||||||
Sbjct: 31059 tcgaaaggtttggacacataaccatccattcccgattttatacattcttcatatgtcgcc 31000
Query: 75 tggataacatctgctgtcat 94
|| || ||||| || |||||
Sbjct: 30999 tgaatgacatccgcggtcat 30980
Score = 42.1 bits (21), Expect = 0.45
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 321 ccatatttctttagagcgcctgcagcaaccttgagatttacaatattatcatc 373
||||||||||| || || ||||||||||| ||||||| || ||||||||||
Sbjct: 30567 ccatatttcttgagcgcagctgcagcaaccctgagattgactttattatcatc 30515
>gb|AACV01005369.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005369, whole
genome shotgun sequence
Length = 6338
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 15 tcgaatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcc 74
||||| || ||||| ||||||||||||||| | ||||| | |||| ||||| |||||||
Sbjct: 2399 tcgaaaggtttggacacataaccatccattcccgattttatacattcttcatatgtcgcc 2340
Query: 75 tggataacatctgctgtcat 94
|| || ||||| || |||||
Sbjct: 2339 tgaatgacatccgcggtcat 2320
Score = 42.1 bits (21), Expect = 0.45
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 321 ccatatttctttagagcgcctgcagcaaccttgagatttacaatattatcatc 373
||||||||||| || || ||||||||||| ||||||| || ||||||||||
Sbjct: 1907 ccatatttcttgagcgcagctgcagcaaccctgagattgactttattatcatc 1855
>ref|XM_467688.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2955
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 15 tcgaatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcc 74
||||| || ||||| ||||||||||||||| | ||||| | |||| ||||| |||||||
Sbjct: 2891 tcgaaaggtttggacacataaccatccattcccgattttatacattcttcatatgtcgcc 2832
Query: 75 tggataacatctgctgtcat 94
|| || ||||| || |||||
Sbjct: 2831 tgaatgacatccgcggtcat 2812
Score = 42.1 bits (21), Expect = 0.45
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 321 ccatatttctttagagcgcctgcagcaaccttgagatttacaatattatcatc 373
||||||||||| || || ||||||||||| ||||||| || ||||||||||
Sbjct: 2588 ccatatttcttgagcgcagctgcagcaaccctgagattgactttattatcatc 2536
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 15 tcgaatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcc 74
||||| || ||||| ||||||||||||||| | ||||| | |||| ||||| |||||||
Sbjct: 6012481 tcgaaaggtttggacacataaccatccattcccgattttatacattcttcatatgtcgcc 6012422
Query: 75 tggataacatctgctgtcat 94
|| || ||||| || |||||
Sbjct: 6012421 tgaatgacatccgcggtcat 6012402
Score = 42.1 bits (21), Expect = 0.45
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 321 ccatatttctttagagcgcctgcagcaaccttgagatttacaatattatcatc 373
||||||||||| || || ||||||||||| ||||||| || ||||||||||
Sbjct: 6011989 ccatatttcttgagcgcagctgcagcaaccctgagattgactttattatcatc 6011937
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 15 tcgaatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcc 74
||||| || ||||| ||||||||||||||| | ||||| | |||| ||||| |||||||
Sbjct: 17341560 tcgaaaggtttggacacataaccatccattcccgattttatacattcttcatatgtcgcc 17341501
Query: 75 tggataacatctgctgtcat 94
|| || ||||| || |||||
Sbjct: 17341500 tgaatgacatccgcggtcat 17341481
Score = 42.1 bits (21), Expect = 0.45
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 321 ccatatttctttagagcgcctgcagcaaccttgagatttacaatattatcatc 373
||||||||||| || || ||||||||||| ||||||| || ||||||||||
Sbjct: 17341068 ccatatttcttgagcgcagctgcagcaaccctgagattgactttattatcatc 17341016
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 15 tcgaatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcc 74
||||| || ||||| ||||||||||||||| | ||||| | |||| ||||| |||||||
Sbjct: 30794624 tcgaaaggtttggacacataaccatccattcccgattttatacattcttcatatgtcgcc 30794565
Query: 75 tggataacatctgctgtcat 94
|| || ||||| || |||||
Sbjct: 30794564 tgaatgacatccgcggtcat 30794545
Score = 42.1 bits (21), Expect = 0.45
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 321 ccatatttctttagagcgcctgcagcaaccttgagatttacaatattatcatc 373
||||||||||| || || ||||||||||| ||||||| || ||||||||||
Sbjct: 30794132 ccatatttcttgagcgcagctgcagcaaccctgagattgactttattatcatc 30794080
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 15 tcgaatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcc 74
||||| || ||||| ||||||||||||||| | ||||| | |||| ||||| |||||||
Sbjct: 30847482 tcgaaaggtttggacacataaccatccattcccgattttatacattcttcatatgtcgcc 30847423
Query: 75 tggataacatctgctgtcat 94
|| || ||||| || |||||
Sbjct: 30847422 tgaatgacatccgcggtcat 30847403
Score = 42.1 bits (21), Expect = 0.45
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 321 ccatatttctttagagcgcctgcagcaaccttgagatttacaatattatcatc 373
||||||||||| || || ||||||||||| ||||||| || ||||||||||
Sbjct: 30846990 ccatatttcttgagcgcagctgcagcaaccctgagattgactttattatcatc 30846938
>gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0016G07, complete sequence
Length = 123167
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctg 232
|||| |||||| | ||||||||||||||||||||
Sbjct: 84848 ttgttgcttcatagccatccatttcaggcatctg 84815
>gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1008_D08,
complete sequence
Length = 94286
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctg 232
|||| |||||| | ||||||||||||||||||||
Sbjct: 17947 ttgttgcttcatagccatccatttcaggcatctg 17914
>gb|AACV01011144.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011144, whole
genome shotgun sequence
Length = 73201
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctg 232
|||| |||||| | ||||||||||||||||||||
Sbjct: 28253 ttgttgcttcatagccatccatttcaggcatctg 28220
>ref|NT_107225.1| Oryza sativa (japonica cultivar-group)
Length = 699699
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctg 232
|||| |||||| | ||||||||||||||||||||
Sbjct: 151740 ttgttgcttcatagccatccatttcaggcatctg 151707
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctg 232
|||| |||||| | ||||||||||||||||||||
Sbjct: 6619657 ttgttgcttcatagccatccatttcaggcatctg 6619624
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctg 232
|||| |||||| | ||||||||||||||||||||
Sbjct: 6619657 ttgttgcttcatagccatccatttcaggcatctg 6619624
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 44.1 bits (22), Expect = 0.11
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctg 232
|||| |||||| | ||||||||||||||||||||
Sbjct: 6713686 ttgttgcttcatagccatccatttcaggcatctg 6713653
>gb|AU092363.1|AU092363 AU092363 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12726, mRNA sequence
Length = 712
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 18 aatggcttggaaacataaccatccatttc 46
||||||||||| ||||| |||||||||||
Sbjct: 99 aatggcttggagacatagccatccatttc 71
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,290,183
Number of Sequences: 438736
Number of extensions: 1290183
Number of successful extensions: 8493
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8141
Number of HSP's gapped (non-prelim): 293
length of query: 798
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 777
effective length of database: 2,791,206,460
effective search space: 2168767419420
effective search space used: 2168767419420
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)