BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.2
(682 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP004184.3| Oryza sativa (japonica cultivar-group) geno... 280 9e-073
gb|AACV01003552.1| Oryza sativa (japonica cultivar-group) c... 280 9e-073
ref|XM_464471.1| Oryza sativa (japonica cultivar-group), mRNA 280 9e-073
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 280 9e-073
dbj|AP004191.3| Oryza sativa (japonica cultivar-group) geno... 280 9e-073
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 280 9e-073
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 280 9e-073
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 280 9e-073
gb|AU082676.1|AU082676 AU082676 Rice panicle at flowering s... 244 5e-062
gb|AU172897.1|AU172897 AU172897 Rice panicle (between 3cm t... 113 1e-022
gb|AU172932.1|AU172932 AU172932 Rice panicle (between 3cm t... 107 8e-021
dbj|AK072708.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 80 2e-012
dbj|AP003626.3| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
dbj|AP003616.4| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
gb|AACV01014531.1| Oryza sativa (japonica cultivar-group) c... 80 2e-012
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
ref|NT_107231.1| Oryza sativa (japonica cultivar-group) 72 4e-010
gb|AACV01014256.1| Oryza sativa (japonica cultivar-group) c... 72 4e-010
dbj|AP005466.2| Oryza sativa (japonica cultivar-group) geno... 72 4e-010
dbj|AP003608.3| Oryza sativa (japonica cultivar-group) geno... 72 4e-010
dbj|AP003867.1| Oryza sativa (japonica cultivar-group) chro... 66 3e-008
dbj|AK069803.1| Oryza sativa (japonica cultivar-group) cDNA... 66 3e-008
dbj|AP003884.2| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
dbj|AP004759.3| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|AACV01018116.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
ref|XM_481636.1| Oryza sativa (japonica cultivar-group), mRNA 66 3e-008
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 66 3e-008
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|AU094117.1|AU094117 AU094117 Rice panicle at flowering s... 64 1e-007
gb|AU312180.1|AU312180 AU312180 Oryza sativa anther cDNA Or... 64 1e-007
dbj|AK072748.1| Oryza sativa (japonica cultivar-group) cDNA... 64 1e-007
gb|AQ866067.1|AQ866067 nbeb0027E01r CUGI Rice BAC Library (... 56 3e-005
gb|AQ912147.1|AQ912147 nbeb0017M24f CUGI Rice BAC Library (... 56 3e-005
gb|AQ954683.1|AQ954683 nbeb0071F05r CUGI Rice BAC Library (... 56 3e-005
dbj|AK119501.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
gb|AU222575.1|AU222575 AU222575 Rice panicle at flowering s... 54 1e-004
dbj|AK103106.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 54 1e-004
dbj|AP002819.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AP005929.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AACV01001867.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
gb|AACV01014109.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
ref|NM_192870.1| Oryza sativa (japonica cultivar-group), p... 54 1e-004
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 54 1e-004
gb|CH401214.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AP003837.2| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|AACV01015402.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|XM_477087.1| Oryza sativa (japonica cultivar-group), mRNA 52 4e-004
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
dbj|AG212995.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.002
gb|AU094002.1|AU094002 AU094002 Rice panicle at flowering s... 50 0.002
dbj|AK069989.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK119482.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AACV01001330.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|XM_463287.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|XM_477090.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
dbj|AP003562.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01002829.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|NM_190223.1| Oryza sativa (japonica cultivar-group), p... 48 0.006
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 48 0.006
dbj|AP003407.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|AACV01000807.1| Oryza sativa (japonica cultivar-group) c... 44 0.098
ref|NM_183645.1| Oryza sativa (japonica cultivar-group), p... 44 0.098
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 44 0.098
dbj|AP003140.2| Oryza sativa (japonica cultivar-group) geno... 44 0.098
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.098
gb|AQ051588.2|AQ051588 nbxb0002cB01r CUGI Rice BAC Library ... 42 0.39
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1225_F07
Length = 142772
Score = 280 bits (141), Expect = 9e-073
Identities = 258/297 (86%)
Strand = Plus / Plus
Query: 82 ggcaccacgaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 141
||||||||||||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 139641 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 139700
Query: 142 agcaagttcctgtacgagggcatcaccatggacaatgtctcctaccccatcatcatcgac 201
| ||||||||||||||| ||||||||||||||||| || |||||| ||||||||||||
Sbjct: 139701 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 139760
Query: 202 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 261
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 139761 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 139820
Query: 262 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 321
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 139821 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 139880
Query: 322 tgcgccaacaacctgccatgccagggcgtgcagctcgtcaacgtcgacatcaagtac 378
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 139881 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 139937
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tacaaggacgagaaggacgtgga 50
|||||||||||||||||||||||
Sbjct: 139587 tacaaggacgagaaggacgtgga 139609
>gb|AACV01003552.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003552, whole
genome shotgun sequence
Length = 23711
Score = 280 bits (141), Expect = 9e-073
Identities = 258/297 (86%)
Strand = Plus / Plus
Query: 82 ggcaccacgaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 141
||||||||||||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 1008 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 1067
Query: 142 agcaagttcctgtacgagggcatcaccatggacaatgtctcctaccccatcatcatcgac 201
| ||||||||||||||| ||||||||||||||||| || |||||| ||||||||||||
Sbjct: 1068 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 1127
Query: 202 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 261
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 1128 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 1187
Query: 262 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 321
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 1188 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 1247
Query: 322 tgcgccaacaacctgccatgccagggcgtgcagctcgtcaacgtcgacatcaagtac 378
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 1248 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 1304
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tacaaggacgagaaggacgtgga 50
|||||||||||||||||||||||
Sbjct: 954 tacaaggacgagaaggacgtgga 976
>ref|XM_464471.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1269
Score = 280 bits (141), Expect = 9e-073
Identities = 258/297 (86%)
Strand = Plus / Plus
Query: 82 ggcaccacgaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 141
||||||||||||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 886 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 945
Query: 142 agcaagttcctgtacgagggcatcaccatggacaatgtctcctaccccatcatcatcgac 201
| ||||||||||||||| ||||||||||||||||| || |||||| ||||||||||||
Sbjct: 946 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 1005
Query: 202 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 261
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 1006 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 1065
Query: 262 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 321
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 1066 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 1125
Query: 322 tgcgccaacaacctgccatgccagggcgtgcagctcgtcaacgtcgacatcaagtac 378
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 1126 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 1182
Score = 60.0 bits (30), Expect = 2e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 9 cgtcggcagcctggggcgctacaaggacgagaaggacgtgga 50
|||||||||||| || || |||||||||||||||||||||||
Sbjct: 813 cgtcggcagcctcggccggtacaaggacgagaaggacgtgga 854
>ref|NT_107177.1| Oryza sativa (japonica cultivar-group)
Length = 1341590
Score = 280 bits (141), Expect = 9e-073
Identities = 258/297 (86%)
Strand = Plus / Plus
Query: 82 ggcaccacgaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 141
||||||||||||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 785410 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 785469
Query: 142 agcaagttcctgtacgagggcatcaccatggacaatgtctcctaccccatcatcatcgac 201
| ||||||||||||||| ||||||||||||||||| || |||||| ||||||||||||
Sbjct: 785470 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 785529
Query: 202 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 261
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 785530 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 785589
Query: 262 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 321
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 785590 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 785649
Query: 322 tgcgccaacaacctgccatgccagggcgtgcagctcgtcaacgtcgacatcaagtac 378
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 785650 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 785706
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tacaaggacgagaaggacgtgga 50
|||||||||||||||||||||||
Sbjct: 785356 tacaaggacgagaaggacgtgga 785378
>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1524_D08
Length = 143046
Score = 280 bits (141), Expect = 9e-073
Identities = 258/297 (86%)
Strand = Plus / Plus
Query: 82 ggcaccacgaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 141
||||||||||||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 66919 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 66978
Query: 142 agcaagttcctgtacgagggcatcaccatggacaatgtctcctaccccatcatcatcgac 201
| ||||||||||||||| ||||||||||||||||| || |||||| ||||||||||||
Sbjct: 66979 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 67038
Query: 202 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 261
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 67039 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 67098
Query: 262 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 321
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 67099 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 67158
Query: 322 tgcgccaacaacctgccatgccagggcgtgcagctcgtcaacgtcgacatcaagtac 378
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 67159 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 67215
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tacaaggacgagaaggacgtgga 50
|||||||||||||||||||||||
Sbjct: 66865 tacaaggacgagaaggacgtgga 66887
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 280 bits (141), Expect = 9e-073
Identities = 258/297 (86%)
Strand = Plus / Plus
Query: 82 ggcaccacgaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 141
||||||||||||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 5516579 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 5516638
Query: 142 agcaagttcctgtacgagggcatcaccatggacaatgtctcctaccccatcatcatcgac 201
| ||||||||||||||| ||||||||||||||||| || |||||| ||||||||||||
Sbjct: 5516639 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 5516698
Query: 202 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 261
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 5516699 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 5516758
Query: 262 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 321
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 5516759 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 5516818
Query: 322 tgcgccaacaacctgccatgccagggcgtgcagctcgtcaacgtcgacatcaagtac 378
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 5516819 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 5516875
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tacaaggacgagaaggacgtgga 50
|||||||||||||||||||||||
Sbjct: 5516525 tacaaggacgagaaggacgtgga 5516547
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 280 bits (141), Expect = 9e-073
Identities = 258/297 (86%)
Strand = Plus / Plus
Query: 82 ggcaccacgaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 141
||||||||||||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 5516579 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 5516638
Query: 142 agcaagttcctgtacgagggcatcaccatggacaatgtctcctaccccatcatcatcgac 201
| ||||||||||||||| ||||||||||||||||| || |||||| ||||||||||||
Sbjct: 5516639 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 5516698
Query: 202 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 261
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 5516699 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 5516758
Query: 262 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 321
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 5516759 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 5516818
Query: 322 tgcgccaacaacctgccatgccagggcgtgcagctcgtcaacgtcgacatcaagtac 378
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 5516819 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 5516875
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tacaaggacgagaaggacgtgga 50
|||||||||||||||||||||||
Sbjct: 5516525 tacaaggacgagaaggacgtgga 5516547
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 280 bits (141), Expect = 9e-073
Identities = 258/297 (86%)
Strand = Plus / Plus
Query: 82 ggcaccacgaacggcctgcgcatcaagtcgtacgaggactccaagtcgtcgctcaaggcc 141
||||||||||||||||| || ||||||||||||||||||||||||||| ||| | |||
Sbjct: 5413338 ggcaccacgaacggcctccggatcaagtcgtacgaggactccaagtcgcagctgagggcg 5413397
Query: 142 agcaagttcctgtacgagggcatcaccatggacaatgtctcctaccccatcatcatcgac 201
| ||||||||||||||| ||||||||||||||||| || |||||| ||||||||||||
Sbjct: 5413398 accaagttcctgtacgacggcatcaccatggacaacgtgagctacccgatcatcatcgac 5413457
Query: 202 cagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtcaac 261
||||||||||||||||||||||||||| | ||||||| | |||||||| ||||||| |
Sbjct: 5413458 cagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtcacc 5413517
Query: 262 gacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctcaac 321
||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||||
Sbjct: 5413518 gacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctcaac 5413577
Query: 322 tgcgccaacaacctgccatgccagggcgtgcagctcgtcaacgtcgacatcaagtac 378
||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 5413578 tgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 5413634
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tacaaggacgagaaggacgtgga 50
|||||||||||||||||||||||
Sbjct: 5413284 tacaaggacgagaaggacgtgga 5413306
>gb|AU082676.1|AU082676 AU082676 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3796, mRNA sequence
Length = 637
Score = 244 bits (123), Expect = 5e-062
Identities = 257/299 (85%), Gaps = 2/299 (0%)
Strand = Plus / Plus
Query: 82 ggcaccacgaacggcctgc-gcatcaagtcgtacgaggactccaagtcgtcgctcaaggc 140
|||||||||||||| || | | ||||||||||||||||||||||||||| ||| | |||
Sbjct: 46 ggcaccacgaacgggcttccggatcaagtcgtacgaggactccaagtcgcagctgagggc 105
Query: 141 cagcaagttcctgtacgagggcatcaccatggac-aatgtctcctaccccatcatcatcg 199
| ||||||||||||||| ||||||||||||||| || || |||||| ||||||||||
Sbjct: 106 gaccaagttcctgtacgacggcatcaccatggacgaacgtgagctacccgatcatcatcg 165
Query: 200 accagaagtactgccccaacaacatctgcgtcaagtccggcgcctccaaggtggccgtca 259
||||||||||||||||||||||||||||| | ||||||| | |||||||| |||||||
Sbjct: 166 accagaagtactgccccaacaacatctgctccgcgtccggcacgtccaaggtcgccgtca 225
Query: 260 acgacgtcgtcttcaagaacatccacggcacctccaacacgccggaggccatcacgctca 319
|||| ||||||||||||||||| |||||| || ||||| |||||| |||||||||
Sbjct: 226 ccgacatcgtcttcaagaacatcgtcggcacgtcggcgacgcccgaggccgtcacgctca 285
Query: 320 actgcgccaacaacctgccatgccagggcgtgcagctcgtcaacgtcgacatcaagtac 378
||||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 286 actgcgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 344
>gb|AU172897.1|AU172897 AU172897 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E40585, mRNA sequence
Length = 449
Score = 113 bits (57), Expect = 1e-022
Identities = 123/145 (84%)
Strand = Plus / Plus
Query: 234 gtccggcgcctccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctc 293
||||||| | |||||||| ||||||| |||| | ||||||||||||||| |||||| ||
Sbjct: 12 gtccggcacgtccaaggtcgccgtcaccgacatggtcttcaagaacatcgtcggcacgtc 71
Query: 294 caacacgccggaggccatcacgctcaactgcgccaacaacctgccatgccagggcgtgca 353
||||| |||||| |||||||||||||||||||||||||||| ||||||||| | ||
Sbjct: 72 ggcgacgcccgaggccgtcacgctcaactgcgccaacaacctgccgtgccagggcatcca 131
Query: 354 gctcgtcaacgtcgacatcaagtac 378
||| |||||||||| ||||||||
Sbjct: 132 gctgcacaacgtcgacctcaagtac 156
>gb|AU172932.1|AU172932 AU172932 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E41143, mRNA sequence
Length = 441
Score = 107 bits (54), Expect = 8e-021
Identities = 122/145 (84%)
Strand = Plus / Plus
Query: 234 gtccggcgcctccaaggtggccgtcaacgacgtcgtcttcaagaacatccacggcacctc 293
||||||| | |||||||| ||||||| |||| | ||||||||||||||| |||||| ||
Sbjct: 4 gtccggcacgtccaaggtcgccgtcaccgacatggtcttcaagaacatcgtcggcacgtc 63
Query: 294 caacacgccggaggccatcacgctcaactgcgccaacaacctgccatgccagggcgtgca 353
||||| ||||| |||||||||||||||||||||||||||| ||||||||| | ||
Sbjct: 64 ggcgacgcccnaggccgtcacgctcaactgcgccaacaacctgccgtgccagggcatcca 123
Query: 354 gctcgtcaacgtcgacatcaagtac 378
||| |||||||||| ||||||||
Sbjct: 124 gctgcacaacgtcgacctcaagtac 148
>dbj|AK072708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142F24, full
insert sequence
Length = 1503
Score = 79.8 bits (40), Expect = 2e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1048 accccatcatcatcgaccagaagtactgccccaacagcatctgc 1091
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 85 accacgaacggcctgcgcatcaagtcgtacgaggactcc 123
||||| || ||||| || |||||||||||||||||||||
Sbjct: 948 accaccaatggcctccggatcaagtcgtacgaggactcc 986
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgag 39
||||||||| |||||||||| || || ||||||||||||
Sbjct: 864 ggcatcagcatcggcagcctcggccggtacaaggacgag 902
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 79.8 bits (40), Expect = 2e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1467442 accccatcatcatcgaccagaagtactgccccaacagcatctgc 1467485
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgcccc 216
|||||||||||||||||||| |||||||||||
Sbjct: 1463203 accccatcatcatcgaccaggagtactgcccc 1463234
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 85 accacgaacggcctgcgcatcaagtcgtacgaggactcc 123
||||| || ||||| || |||||||||||||||||||||
Sbjct: 1467342 accaccaatggcctccggatcaagtcgtacgaggactcc 1467380
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgag 39
||||||||| |||||||||| || || ||||||||||||
Sbjct: 1467258 ggcatcagcatcggcagcctcggccggtacaaggacgag 1467296
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0429G06
Length = 158321
Score = 79.8 bits (40), Expect = 2e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11650 accccatcatcatcgaccagaagtactgccccaacagcatctgc 11693
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgcccc 216
|||||||||||||||||||| |||||||||||
Sbjct: 7411 accccatcatcatcgaccaggagtactgcccc 7442
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 85 accacgaacggcctgcgcatcaagtcgtacgaggactcc 123
||||| || ||||| || |||||||||||||||||||||
Sbjct: 11550 accaccaatggcctccggatcaagtcgtacgaggactcc 11588
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgag 39
||||||||| |||||||||| || || ||||||||||||
Sbjct: 11466 ggcatcagcatcggcagcctcggccggtacaaggacgag 11504
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0490F09
Length = 149542
Score = 79.8 bits (40), Expect = 2e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 131568 accccatcatcatcgaccagaagtactgccccaacagcatctgc 131611
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgcccc 216
|||||||||||||||||||| |||||||||||
Sbjct: 127329 accccatcatcatcgaccaggagtactgcccc 127360
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 85 accacgaacggcctgcgcatcaagtcgtacgaggactcc 123
||||| || ||||| || |||||||||||||||||||||
Sbjct: 131468 accaccaatggcctccggatcaagtcgtacgaggactcc 131506
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgag 39
||||||||| |||||||||| || || ||||||||||||
Sbjct: 131384 ggcatcagcatcggcagcctcggccggtacaaggacgag 131422
>gb|AACV01014531.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014531, whole
genome shotgun sequence
Length = 41492
Score = 79.8 bits (40), Expect = 2e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 32323 accccatcatcatcgaccagaagtactgccccaacagcatctgc 32366
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgcccc 216
|||||||||||||||||||| |||||||||||
Sbjct: 28084 accccatcatcatcgaccaggagtactgcccc 28115
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 85 accacgaacggcctgcgcatcaagtcgtacgaggactcc 123
||||| || ||||| || |||||||||||||||||||||
Sbjct: 32223 accaccaatggcctccggatcaagtcgtacgaggactcc 32261
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgag 39
||||||||| |||||||||| || || ||||||||||||
Sbjct: 32139 ggcatcagcatcggcagcctcggccggtacaaggacgag 32177
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 79.8 bits (40), Expect = 2e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5323255 accccatcatcatcgaccagaagtactgccccaacagcatctgc 5323298
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgtg 48
||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1633922 ggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 1633875
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 1643975 accccatcatcatcgacatgaagtactgccccaacaagatctgc 1643932
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 1643770 caacaagaccatggccgtctgcaagaatgcca 1643739
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 1633738 accccatcatcatcgacatgaagtactgccccaacaagatctgc 1633695
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 1633534 caacaagaccatggccgtctgcaagaatgcca 1633503
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgcccc 216
|||||||||||||||||||| |||||||||||
Sbjct: 5319016 accccatcatcatcgaccaggagtactgcccc 5319047
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
|||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 1644159 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 1644116
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 85 accacgaacggcctgcgcatcaagtcgtacgaggactcc 123
||||| || ||||| || |||||||||||||||||||||
Sbjct: 5323155 accaccaatggcctccggatcaagtcgtacgaggactcc 5323193
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgag 39
||||||||| |||||||||| || || ||||||||||||
Sbjct: 5323071 ggcatcagcatcggcagcctcggccggtacaaggacgag 5323109
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 79.8 bits (40), Expect = 2e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 23021992 accccatcatcatcgaccagaagtactgccccaacagcatctgc 23022035
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgtg 48
||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 19332659 ggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 19332612
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 19342712 accccatcatcatcgacatgaagtactgccccaacaagatctgc 19342669
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 19342507 caacaagaccatggccgtctgcaagaatgcca 19342476
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 19332475 accccatcatcatcgacatgaagtactgccccaacaagatctgc 19332432
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 19332271 caacaagaccatggccgtctgcaagaatgcca 19332240
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgcccc 216
|||||||||||||||||||| |||||||||||
Sbjct: 23017753 accccatcatcatcgaccaggagtactgcccc 23017784
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
|||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 19342896 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 19342853
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 178 gtctcctaccccatcatcatcgaccagaagtactgcccc 216
|||||| |||||||||||||||||||| | |||||||||
Sbjct: 17502922 gtctccaaccccatcatcatcgaccagcattactgcccc 17502960
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 85 accacgaacggcctgcgcatcaagtcgtacgaggactcc 123
||||| || ||||| || |||||||||||||||||||||
Sbjct: 23021892 accaccaatggcctccggatcaagtcgtacgaggactcc 23021930
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgag 39
||||||||| |||||||||| || || ||||||||||||
Sbjct: 23021808 ggcatcagcatcggcagcctcggccggtacaaggacgag 23021846
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 79.8 bits (40), Expect = 2e-012
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24001957 accccatcatcatcgaccagaagtactgccccaacagcatctgc 24002000
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgtg 48
||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 20234516 ggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 20234469
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 20273917 accccatcatcatcgacatgaagtactgccccaacaagatctgc 20273874
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 20273712 caacaagaccatggccgtctgcaagaatgcca 20273681
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 20244559 accccatcatcatcgacatgaagtactgccccaacaagatctgc 20244516
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 20244354 caacaagaccatggccgtctgcaagaatgcca 20244323
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 20234332 accccatcatcatcgacatgaagtactgccccaacaagatctgc 20234289
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 20234128 caacaagaccatggccgtctgcaagaatgcca 20234097
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgcccc 216
|||||||||||||||||||| |||||||||||
Sbjct: 23997718 accccatcatcatcgaccaggagtactgcccc 23997749
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
|||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 20274101 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 20274058
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
|||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 20244743 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 20244700
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 178 gtctcctaccccatcatcatcgaccagaagtactgcccc 216
|||||| |||||||||||||||||||| | |||||||||
Sbjct: 17969763 gtctccaaccccatcatcatcgaccagcattactgcccc 17969801
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 85 accacgaacggcctgcgcatcaagtcgtacgaggactcc 123
||||| || ||||| || |||||||||||||||||||||
Sbjct: 24001857 accaccaatggcctccggatcaagtcgtacgaggactcc 24001895
Score = 46.1 bits (23), Expect = 0.025
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgag 39
||||||||| |||||||||| || || ||||||||||||
Sbjct: 24001773 ggcatcagcatcggcagcctcggccggtacaaggacgag 24001811
>ref|NT_107231.1| Oryza sativa (japonica cultivar-group)
Length = 1372977
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgtg 48
||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 100516 ggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 100469
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 139917 accccatcatcatcgacatgaagtactgccccaacaagatctgc 139874
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 139712 caacaagaccatggccgtctgcaagaatgcca 139681
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 110559 accccatcatcatcgacatgaagtactgccccaacaagatctgc 110516
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 110354 caacaagaccatggccgtctgcaagaatgcca 110323
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 100332 accccatcatcatcgacatgaagtactgccccaacaagatctgc 100289
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 100128 caacaagaccatggccgtctgcaagaatgcca 100097
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
|||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 140101 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 140058
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
|||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 110743 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 110700
>gb|AACV01014256.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014256, whole
genome shotgun sequence
Length = 44535
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgtg 48
||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 15707 ggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 15660
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 25760 accccatcatcatcgacatgaagtactgccccaacaagatctgc 25717
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 25555 caacaagaccatggccgtctgcaagaatgcca 25524
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 15523 accccatcatcatcgacatgaagtactgccccaacaagatctgc 15480
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 15319 caacaagaccatggccgtctgcaagaatgcca 15288
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
|||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 25944 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 25901
>dbj|AP005466.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1212_H09
Length = 129040
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgtg 48
||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 48026 ggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 47979
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 87427 accccatcatcatcgacatgaagtactgccccaacaagatctgc 87384
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 87222 caacaagaccatggccgtctgcaagaatgcca 87191
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 58069 accccatcatcatcgacatgaagtactgccccaacaagatctgc 58026
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 57864 caacaagaccatggccgtctgcaagaatgcca 57833
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 47842 accccatcatcatcgacatgaagtactgccccaacaagatctgc 47799
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 47638 caacaagaccatggccgtctgcaagaatgcca 47607
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
|||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 87611 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 87568
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
|||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 58253 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 58210
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0007G12
Length = 111819
Score = 71.9 bits (36), Expect = 4e-010
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaaggacgtg 48
||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 100516 ggcatcagcgtcggcagcctgggcagatacaaggacgagaaggacgtg 100469
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 110559 accccatcatcatcgacatgaagtactgccccaacaagatctgc 110516
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 110354 caacaagaccatggccgtctgcaagaatgcca 110323
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 100332 accccatcatcatcgacatgaagtactgccccaacaagatctgc 100289
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 100128 caacaagaccatggccgtctgcaagaatgcca 100097
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
|||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 110743 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 110700
>dbj|AP003867.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1111_B02,
*** SEQUENCING IN PROGRESS ***
Length = 96360
Score = 65.9 bits (33), Expect = 3e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 51869 accccatcatcatcgaccagaagtactgcccctactacaactgcg 51825
>dbj|AK069803.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027O10, full
insert sequence
Length = 1946
Score = 65.9 bits (33), Expect = 3e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 1263 accccatcatcatcgaccagaagtactgcccctactacaactgcg 1307
>dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1136_A10
Length = 101249
Score = 65.9 bits (33), Expect = 3e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 100759 accccatcatcatcgaccagaagtactgcccctactacaactgcg 100715
>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0670E08
Length = 133106
Score = 65.9 bits (33), Expect = 3e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 41962 accccatcatcatcgaccagaagtactgcccctactacaactgcg 41918
>gb|AACV01018116.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018116, whole
genome shotgun sequence
Length = 36630
Score = 65.9 bits (33), Expect = 3e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 7223 accccatcatcatcgaccagaagtactgcccctactacaactgcg 7179
>ref|XM_481636.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1947
Score = 65.9 bits (33), Expect = 3e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 1263 accccatcatcatcgaccagaagtactgcccctactacaactgcg 1307
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 65.9 bits (33), Expect = 3e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 14159592 accccatcatcatcgaccagaagtactgcccctactacaactgcg 14159548
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 65.9 bits (33), Expect = 3e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 5775412 accccatcatcatcgaccagaagtactgcccctactacaactgcg 5775368
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 65.9 bits (33), Expect = 3e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 13377418 accccatcatcatcgaccagaagtactgcccctactacaactgcg 13377374
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 65.9 bits (33), Expect = 3e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgcg 229
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 14397679 accccatcatcatcgaccagaagtactgcccctactacaactgcg 14397635
>gb|AU094117.1|AU094117 AU094117 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2591, mRNA sequence
Length = 478
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 141 caacaagaccatggccgtctgcaagaatgcca 172
>gb|AU312180.1|AU312180 AU312180 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1658, mRNA sequence
Length = 356
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 86 caacaagaccatggccgtctgcaagaatgcca 117
>dbj|AK072748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140O11, full
insert sequence
Length = 1559
Score = 63.9 bits (32), Expect = 1e-007
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 390 caacaagaccatggccgtctgcaagaatgcca 421
||||||||||||||||||||||||||||||||
Sbjct: 1215 caacaagaccatggccgtctgcaagaatgcca 1246
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaacaacatctgc 228
||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 1010 accccatcatcatcgacatgaagtactgccccaacaagatctgc 1053
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1 ggcatcagcgtcggcagcctggggcgctacaaggacgagaagga 44
|||||||||||||| |||||||| | |||||||||||||||||
Sbjct: 826 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaagga 869
>gb|AQ866067.1|AQ866067 nbeb0027E01r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0027E01r, DNA sequence
Length = 842
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgcccc 216
|||||||||||||||||||| |||||||||||
Sbjct: 448 accccatcatcatcgaccaggagtactgcccc 417
>gb|AQ912147.1|AQ912147 nbeb0017M24f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0017M24f, DNA sequence
Length = 799
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgcccc 216
|||||||||||||||||||| |||||||||||
Sbjct: 408 accccatcatcatcgaccaggagtactgcccc 377
>gb|AQ954683.1|AQ954683 nbeb0071F05r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0071F05r, DNA
sequence
Length = 432
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgcccc 216
|||||||||||||||||||| |||||||||||
Sbjct: 377 accccatcatcatcgaccaggagtactgcccc 346
>dbj|AK119501.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-E08, full
insert sequence
Length = 1456
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgcccc 216
|||||||||||||||||||| |||||||||||
Sbjct: 999 accccatcatcatcgaccaggagtactgcccc 1030
>gb|AU222575.1|AU222575 AU222575 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1446, mRNA sequence
Length = 569
Score = 54.0 bits (27), Expect = 1e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 324 cgccaacaacctgccatgccagggcgtgcagctcgtcaacgtcgacatcaagtac 378
||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||
Sbjct: 1 cgccaacaacctgccgtgccagggcatccagctgcacaacgtcgacctcaagtac 55
>dbj|AK103106.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118O22, full
insert sequence
Length = 1594
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaac 219
||||||||||||||||||||| ||||||||||||
Sbjct: 976 accccatcatcatcgaccagagctactgccccaac 1010
>ref|NT_079878.2| Oryza sativa (japonica cultivar-group)
Length = 2996370
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 178 gtctcctaccccatcatcatcgaccagaagtactgcccc 216
|||||| |||||||||||||||||||| | |||||||||
Sbjct: 2702285 gtctccaaccccatcatcatcgaccagcattactgcccc 2702323
>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0501G01
Length = 154561
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaac 219
||||||||||||||||||||| ||||||||||||
Sbjct: 119955 accccatcatcatcgaccagagctactgccccaac 119921
>dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0071G09
Length = 169148
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 178 gtctcctaccccatcatcatcgaccagaagtactgcccc 216
|||||| |||||||||||||||||||| | |||||||||
Sbjct: 36069 gtctccaaccccatcatcatcgaccagcattactgcccc 36107
>gb|AACV01001867.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001867, whole
genome shotgun sequence
Length = 63761
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaac 219
||||||||||||||||||||| ||||||||||||
Sbjct: 10304 accccatcatcatcgaccagagctactgccccaac 10270
>gb|AACV01014109.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014109, whole
genome shotgun sequence
Length = 47054
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 178 gtctcctaccccatcatcatcgaccagaagtactgcccc 216
|||||| |||||||||||||||||||| | |||||||||
Sbjct: 16914 gtctccaaccccatcatcatcgaccagcattactgcccc 16876
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaac 219
||||||||||||||||||||| ||||||||||||
Sbjct: 24975552 accccatcatcatcgaccagagctactgccccaac 24975518
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 285 cggcacctccaacacgccggaggcc 309
|||||||||||||||||||||||||
Sbjct: 18428028 cggcacctccaacacgccggaggcc 18428004
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgcccc 216
|||||||||||||||||||| | |||||||||
Sbjct: 38824393 accccatcatcatcgaccagcactactgcccc 38824424
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgca 412
|||||||||||||||||||||||
Sbjct: 18427923 caacaagaccatggccgtctgca 18427901
Score = 44.1 bits (22), Expect = 0.098
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgcc 214
|||||||||||||||||||| | |||||||
Sbjct: 10827284 accccatcatcatcgaccagtactactgcc 10827313
>ref|NM_192870.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1203
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 185 accccatcatcatcgaccagaagtactgccccaac 219
||||||||||||||||||||| ||||||||||||
Sbjct: 920 accccatcatcatcgaccagagctactgccccaac 954
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 185 accccatcatcatcgaccagaagtactgccccaac 219
||||||||||||||||||||| ||||||||||||
Sbjct: 7893784 accccatcatcatcgaccagagctactgccccaac 7893750
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 285 cggcacctccaacacgccggaggcc 309
|||||||||||||||||||||||||
Sbjct: 1346260 cggcacctccaacacgccggaggcc 1346236
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 390 caacaagaccatggccgtctgca 412
|||||||||||||||||||||||
Sbjct: 1346155 caacaagaccatggccgtctgca 1346133
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 941,525
Number of Sequences: 438736
Number of extensions: 941525
Number of successful extensions: 6071
Number of sequences better than 0.5: 80
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5455
Number of HSP's gapped (non-prelim): 604
length of query: 682
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 661
effective length of database: 2,791,206,460
effective search space: 1844987470060
effective search space used: 1844987470060
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)