BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115139.2.1
(1079 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_483338.1| Oryza sativa (japonica cultivar-group), mRNA 246 2e-062
gb|C73757.1|C73757 C73757 Rice panicle (longer than 10cm) O... 121 8e-025
gb|BP184676.1|BP184676 BP184676 pNS rice panicle cDNA, germ... 121 8e-025
gb|AC099403.1| Oryza sativa (japonica cultivar-group) chrom... 121 8e-025
gb|AC108757.1| Oryza sativa (japonica cultivar-group) chrom... 121 8e-025
dbj|AK099770.1| Oryza sativa (japonica cultivar-group) cDNA... 121 8e-025
gb|AACV01020329.1| Oryza sativa (japonica cultivar-group) c... 121 8e-025
dbj|AB110186.1| Oryza sativa (japonica cultivar-group) mRNA... 121 8e-025
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 121 8e-025
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 121 8e-025
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 121 8e-025
dbj|AP003903.2| Oryza sativa (japonica cultivar-group) chro... 119 3e-024
dbj|AP004761.3| Oryza sativa (japonica cultivar-group) geno... 119 3e-024
gb|AACV01018850.1| Oryza sativa (japonica cultivar-group) c... 119 3e-024
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 119 3e-024
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 119 3e-024
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 119 3e-024
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 119 3e-024
gb|AQ867193.1|AQ867193 nbeb0031C01f CUGI Rice BAC Library (... 107 1e-020
ref|NM_189001.1| Oryza sativa (japonica cultivar-group), mRNA 62 7e-007
gb|AU312203.1|AU312203 AU312203 Oryza sativa anther cDNA Or... 56 4e-005
gb|AACV01020321.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AC108762.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
dbj|AP004655.2| Oryza sativa (japonica cultivar-group) chro... 46 0.040
dbj|AK106439.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.040
dbj|AP005415.2| Oryza sativa (japonica cultivar-group) geno... 46 0.040
gb|AACV01017860.1| Oryza sativa (japonica cultivar-group) c... 46 0.040
ref|XM_481219.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.040
>ref|XM_483338.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1086
Score = 246 bits (124), Expect = 2e-062
Identities = 349/424 (82%)
Strand = Plus / Plus
Query: 296 tgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaagaagaacccat 355
||||||||||||| ||||||||||| ||||||| || | || ||||||||||||||||
Sbjct: 392 tgcttgattcagcgataaacggcaccctgaacgttctgagatcatgcaagaagaacccat 451
Query: 356 cgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaaggacgaagccg 415
| ||||||||||| ||||| || || || || || || |||||| |||| || ||||| |
Sbjct: 452 ccctcaagagggtagtcctcacctcttcatcatcaaccgtgaggctcaaagatgaagctg 511
Query: 416 acctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagttctgcgaaa 475
| ||||| || |||||| ||||||| || | || ||||||||||| ||||||||||| |
Sbjct: 512 atctgccacccaacgtgttgctggatgagacatcatggagctccatggagttctgcgaga 571
Query: 476 gtctccagatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcg 535
|||||||||||||||||||| | || |||| || || ||||||||||||||||||||||
Sbjct: 572 gtctccagatatggtacgccattgccaagacacttgcagagaaggcagcctgggagttcg 631
Query: 536 ccggagagcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactc 595
|| ||| || | |||||||| || | |||||||| |||||||| || ||||| | ||
Sbjct: 632 ccaaggagaacggcatcgaccttgtggctgttcttccaaccttcgtggttggacccaatc 691
Query: 596 tgtctcctgagctcggccccaccgcttctgatgtcctcggcctgttccaaggagagacgg 655
|||||| ||| | | ||||| | | |||||||||||||| |||||||| |||||
Sbjct: 692 tgtctcatgaattaagtcccactaccaccgatgtcctcggcctattccaaggtgagacaa 751
Query: 656 ggaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcc 715
||||||||| | ||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct: 752 cgaagttcaccatgtacgggaggatggggtacgtccacatcgacgatgtcgcgagctgcc 811
Query: 716 acat 719
||||
Sbjct: 812 acat 815
Score = 174 bits (88), Expect = 6e-041
Identities = 223/268 (83%)
Strand = Plus / Plus
Query: 7 aacactgctaagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctggctc 66
|||||| | ||||| ||||| |||||||||||||| ||||| | | ||||| |||||
Sbjct: 7 aacactaccaagggcaaggtgtgtgtcactggggcttctggctatgttgcctcttggctt 66
Query: 67 gtcaagcggcttcttgagtctgggtaccatgtcctgggaacagtcagagacccagggaat 126
|| ||||| ||||||||||| ||||| ||||| || || ||||||||||||||||| |||
Sbjct: 67 gtgaagcgacttcttgagtcagggtatcatgttcttgggacagtcagagacccaggcaat 126
Query: 127 ggcaagaaagtagggcacctctggggcctggaaggcgcaaaggaaaggctgcagctcgtg 186
|||||||||||||||||| ||| | ||| ||||||||||||||| |||| |||
Sbjct: 127 cacaagaaagtagggcacctgtggaatttaacaggtgcaaaggaaaggctggagcttgtg 186
Query: 187 agagctgatctcttggaggaagggagcttcgacgacgctgtgatggcttgcgagggcgtc 246
|||||||| |||||||| ||||||||||| || || |||||||||||||| ||||| |||
Sbjct: 187 agagctgacctcttggaagaagggagctttgatgatgctgtgatggcttgtgagggtgtc 246
Query: 247 ttccacaccgcatcgcccgtcgtcaccg 274
||||| || ||||| || ||| ||||||
Sbjct: 247 ttccatactgcatcacctgtcatcaccg 274
Score = 52.0 bits (26), Expect = 6e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 925 gaggagatgttcgacgacgccgtcgcctcg 954
||||||||||||||||||||||||| ||||
Sbjct: 1018 gaggagatgttcgacgacgccgtcgactcg 1047
>gb|C73757.1|C73757 C73757 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20395_1A, mRNA sequence
Length = 455
Score = 121 bits (61), Expect = 8e-025
Identities = 91/101 (90%)
Strand = Plus / Plus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
|||||||| |||||||| || |||||||||||||| |||| ||||||||||| |||||
Sbjct: 179 gcaaaggagaggctgcaacttgtgagagctgatctgatggaagaagggagctttgacgat 238
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcc 263
||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 239 gctgtgatggcttgcgaaggcgtcttccacactgcatcgcc 279
>gb|BP184676.1|BP184676 BP184676 pNS rice panicle cDNA, germ cell generating stage Oryza
sativa (japonica cultivar-group) cDNA clone 14FPG037,
mRNA sequence
Length = 1210
Score = 121 bits (61), Expect = 8e-025
Identities = 91/101 (90%)
Strand = Plus / Plus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
|||||||| |||||||| || |||||||||||||| |||| ||||||||||| |||||
Sbjct: 177 gcaaaggagaggctgcaacttgtgagagctgatctgatggaagaagggagctttgacgat 236
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcc 263
||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 237 gctgtgatggcttgcgaaggcgtcttccacactgcatcgcc 277
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 668 cgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgccacatgctggcgt 727
|||| ||||| ||||| || || ||||||||||| |||||||| |||||||| |||| ||
Sbjct: 685 cgtatgggagaatgggatatgttcacatcgacgatgtggcgagctgccacattctggtgt 744
Query: 728 acga 731
||||
Sbjct: 745 acga 748
>gb|AC099403.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNBa0005C18, *** SEQUENCING IN PROGRESS ***, 5 ordered
pieces
Length = 145550
Score = 121 bits (61), Expect = 8e-025
Identities = 91/101 (90%)
Strand = Plus / Plus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
|||||||| |||||||| || |||||||||||||| |||| ||||||||||| |||||
Sbjct: 67030 gcaaaggagaggctgcaacttgtgagagctgatctgatggaagaagggagctttgacgat 67089
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcc 263
||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 67090 gctgtgatggcttgcgaaggcgtcttccacactgcatcgcc 67130
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 668 cgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgccacatgctggcgt 727
|||| ||||| ||||| || || ||||||||||| |||||||| |||||||| |||| ||
Sbjct: 67902 cgtatgggagaatgggatatgttcacatcgacgatgtggcgagctgccacattctggtgt 67961
Query: 728 acga 731
||||
Sbjct: 67962 acga 67965
>gb|AC108757.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNba0056P13, *** SEQUENCING IN PROGRESS ***, 9 ordered
pieces
Length = 173729
Score = 121 bits (61), Expect = 8e-025
Identities = 91/101 (90%)
Strand = Plus / Minus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
|||||||| |||||||| || |||||||||||||| |||| ||||||||||| |||||
Sbjct: 20535 gcaaaggagaggctgcaacttgtgagagctgatctgatggaagaagggagctttgacgat 20476
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcc 263
||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 20475 gctgtgatggcttgcgaaggcgtcttccacactgcatcgcc 20435
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 668 cgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgccacatgctggcgt 727
|||| ||||| ||||| || || ||||||||||| |||||||| |||||||| |||| ||
Sbjct: 19663 cgtatgggagaatgggatatgttcacatcgacgatgtggcgagctgccacattctggtgt 19604
Query: 728 acga 731
||||
Sbjct: 19603 acga 19600
>dbj|AK099770.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095D01, full
insert sequence
Length = 2836
Score = 121 bits (61), Expect = 8e-025
Identities = 91/101 (90%)
Strand = Plus / Plus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
|||||||| |||||||| || |||||||||||||| |||| ||||||||||| |||||
Sbjct: 1795 gcaaaggagaggctgcaacttgtgagagctgatctgatggaagaagggagctttgacgat 1854
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcc 263
||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 1855 gctgtgatggcttgcgaaggcgtcttccacactgcatcgcc 1895
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 668 cgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgccacatgctggcgt 727
|||| ||||| ||||| || || ||||||||||| |||||||| |||||||| |||| ||
Sbjct: 2303 cgtatgggagaatgggatatgttcacatcgacgatgtggcgagctgccacattctggtgt 2362
Query: 728 acga 731
||||
Sbjct: 2363 acga 2366
>gb|AACV01020329.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020329, whole
genome shotgun sequence
Length = 22170
Score = 121 bits (61), Expect = 8e-025
Identities = 91/101 (90%)
Strand = Plus / Minus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
|||||||| |||||||| || |||||||||||||| |||| ||||||||||| |||||
Sbjct: 5796 gcaaaggagaggctgcaacttgtgagagctgatctgatggaagaagggagctttgacgat 5737
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcc 263
||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 5736 gctgtgatggcttgcgaaggcgtcttccacactgcatcgcc 5696
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 668 cgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgccacatgctggcgt 727
|||| ||||| ||||| || || ||||||||||| |||||||| |||||||| |||| ||
Sbjct: 4924 cgtatgggagaatgggatatgttcacatcgacgatgtggcgagctgccacattctggtgt 4865
Query: 728 acga 731
||||
Sbjct: 4864 acga 4861
>dbj|AB110186.1| Oryza sativa (japonica cultivar-group) mRNA for dihydroflavonol
reductase, complete cds, clone: 14FPG037
Length = 1194
Score = 121 bits (61), Expect = 8e-025
Identities = 91/101 (90%)
Strand = Plus / Plus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
|||||||| |||||||| || |||||||||||||| |||| ||||||||||| |||||
Sbjct: 177 gcaaaggagaggctgcaacttgtgagagctgatctgatggaagaagggagctttgacgat 236
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcc 263
||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 237 gctgtgatggcttgcgaaggcgtcttccacactgcatcgcc 277
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 668 cgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgccacatgctggcgt 727
|||| ||||| ||||| || || ||||||||||| |||||||| |||||||| |||| ||
Sbjct: 685 cgtatgggagaatgggatatgttcacatcgacgatgtggcgagctgccacattctggtgt 744
Query: 728 acga 731
||||
Sbjct: 745 acga 748
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 121 bits (61), Expect = 8e-025
Identities = 91/101 (90%)
Strand = Plus / Minus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
|||||||| |||||||| || |||||||||||||| |||| ||||||||||| |||||
Sbjct: 8353648 gcaaaggagaggctgcaacttgtgagagctgatctgatggaagaagggagctttgacgat 8353589
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcc 263
||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 8353588 gctgtgatggcttgcgaaggcgtcttccacactgcatcgcc 8353548
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 668 cgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgccacatgctggcgt 727
|||| ||||| ||||| || || ||||||||||| |||||||| |||||||| |||| ||
Sbjct: 8352776 cgtatgggagaatgggatatgttcacatcgacgatgtggcgagctgccacattctggtgt 8352717
Query: 728 acga 731
||||
Sbjct: 8352716 acga 8352713
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||||
Sbjct: 8276412 ttcatcgcctcctggctcgtcaagc 8276388
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 121 bits (61), Expect = 8e-025
Identities = 91/101 (90%)
Strand = Plus / Minus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
|||||||| |||||||| || |||||||||||||| |||| ||||||||||| |||||
Sbjct: 17827459 gcaaaggagaggctgcaacttgtgagagctgatctgatggaagaagggagctttgacgat 17827400
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcc 263
||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 17827399 gctgtgatggcttgcgaaggcgtcttccacactgcatcgcc 17827359
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 668 cgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgccacatgctggcgt 727
|||| ||||| ||||| || || ||||||||||| |||||||| |||||||| |||| ||
Sbjct: 17826587 cgtatgggagaatgggatatgttcacatcgacgatgtggcgagctgccacattctggtgt 17826528
Query: 728 acga 731
||||
Sbjct: 17826527 acga 17826524
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||||
Sbjct: 17750223 ttcatcgcctcctggctcgtcaagc 17750199
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 121 bits (61), Expect = 8e-025
Identities = 91/101 (90%)
Strand = Plus / Minus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
|||||||| |||||||| || |||||||||||||| |||| ||||||||||| |||||
Sbjct: 18825022 gcaaaggagaggctgcaacttgtgagagctgatctgatggaagaagggagctttgacgat 18824963
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcc 263
||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 18824962 gctgtgatggcttgcgaaggcgtcttccacactgcatcgcc 18824922
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 668 cgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgccacatgctggcgt 727
|||| ||||| ||||| || || ||||||||||| |||||||| |||||||| |||| ||
Sbjct: 18824150 cgtatgggagaatgggatatgttcacatcgacgatgtggcgagctgccacattctggtgt 18824091
Query: 728 acga 731
||||
Sbjct: 18824090 acga 18824087
>dbj|AP003903.2| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1047_H11,
*** SEQUENCING IN PROGRESS ***
Length = 123495
Score = 119 bits (60), Expect = 3e-024
Identities = 156/188 (82%)
Strand = Plus / Minus
Query: 296 tgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaagaagaacccat 355
||||||||||||| ||||||||||| ||||||| || | || ||||||||||||||||
Sbjct: 87956 tgcttgattcagcgataaacggcaccctgaacgttctgagatcatgcaagaagaacccat 87897
Query: 356 cgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaaggacgaagccg 415
| ||||||||||| ||||| || || || || || || |||||| |||| || ||||| |
Sbjct: 87896 ccctcaagagggtagtcctcacctcttcatcatcaaccgtgaggctcaaagatgaagctg 87837
Query: 416 acctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagttctgcgaaa 475
| ||||| || |||||| ||||||| || | || ||||||||||| ||||||||||| |
Sbjct: 87836 atctgccacccaacgtgttgctggatgagacatcatggagctccatggagttctgcgaga 87777
Query: 476 gtctccag 483
||||||||
Sbjct: 87776 gtctccag 87769
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
||||||||||||||| |||| ||||||||||| |||||||| ||||||||||| || ||
Sbjct: 88229 gcaaaggaaaggctggagcttgtgagagctgacctcttggaagaagggagctttgatgat 88170
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcccgtcgtcaccg 274
|||||||||||||| ||||| |||||||| || ||||| || ||| ||||||
Sbjct: 88169 gctgtgatggcttgtgagggtgtcttccatactgcatcacctgtcatcaccg 88118
Score = 85.7 bits (43), Expect = 5e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 657 gaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcca 716
||||||||| | ||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 87337 gaagttcaccatgtacgggaggatggggtacgtccacatcgacgatgtcgcgagctgcca 87278
Query: 717 cat 719
|||
Sbjct: 87277 cat 87275
Score = 79.8 bits (40), Expect = 3e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 7 aacactgctaagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctggctc 66
|||||| | ||||| ||||| |||||||||||||| ||||| | | ||||| |||||
Sbjct: 88490 aacactaccaagggcaaggtgtgtgtcactggggcttctggctatgttgcctcttggctt 88431
Query: 67 gtcaagcggcttcttgagtctgggtaccatgtcctgggaacagtcagagacccagg 122
|| ||||| ||||||||||| ||||| ||||| || || |||||||||||||||||
Sbjct: 88430 gtgaagcgacttcttgagtcagggtatcatgttcttgggacagtcagagacccagg 88375
Score = 63.9 bits (32), Expect = 2e-007
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 482 agatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggag 541
|||||||||||||| | || |||| || || |||||||||||||||||||||||| |
Sbjct: 87687 agatatggtacgccattgccaagacacttgcagagaaggcagcctgggagttcgccaagg 87628
Query: 542 agcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctc 601
|| || | |||||||| || | |||||||| |||||||| || ||||| | ||||||||
Sbjct: 87627 agaacggcatcgaccttgtggctgttcttccaaccttcgtggttggacccaatctgtctc 87568
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 669 gtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcc 715
|||||||||||||| |||||||||||| |||||||| ||||| ||||
Sbjct: 94347 gtacgggaggatggtgtacgtccacatggacgacgtcgcgagctgcc 94393
Score = 52.0 bits (26), Expect = 6e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 925 gaggagatgttcgacgacgccgtcgcctcg 954
||||||||||||||||||||||||| ||||
Sbjct: 86965 gaggagatgttcgacgacgccgtcgactcg 86936
>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0686C03
Length = 164529
Score = 119 bits (60), Expect = 3e-024
Identities = 156/188 (82%)
Strand = Plus / Minus
Query: 296 tgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaagaagaacccat 355
||||||||||||| ||||||||||| ||||||| || | || ||||||||||||||||
Sbjct: 71925 tgcttgattcagcgataaacggcaccctgaacgttctgagatcatgcaagaagaacccat 71866
Query: 356 cgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaaggacgaagccg 415
| ||||||||||| ||||| || || || || || || |||||| |||| || ||||| |
Sbjct: 71865 ccctcaagagggtagtcctcacctcttcatcatcaaccgtgaggctcaaagatgaagctg 71806
Query: 416 acctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagttctgcgaaa 475
| ||||| || |||||| ||||||| || | || ||||||||||| ||||||||||| |
Sbjct: 71805 atctgccacccaacgtgttgctggatgagacatcatggagctccatggagttctgcgaga 71746
Query: 476 gtctccag 483
||||||||
Sbjct: 71745 gtctccag 71738
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
||||||||||||||| |||| ||||||||||| |||||||| ||||||||||| || ||
Sbjct: 72198 gcaaaggaaaggctggagcttgtgagagctgacctcttggaagaagggagctttgatgat 72139
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcccgtcgtcaccg 274
|||||||||||||| ||||| |||||||| || ||||| || ||| ||||||
Sbjct: 72138 gctgtgatggcttgtgagggtgtcttccatactgcatcacctgtcatcaccg 72087
Score = 85.7 bits (43), Expect = 5e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 657 gaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcca 716
||||||||| | ||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 71306 gaagttcaccatgtacgggaggatggggtacgtccacatcgacgatgtcgcgagctgcca 71247
Query: 717 cat 719
|||
Sbjct: 71246 cat 71244
Score = 79.8 bits (40), Expect = 3e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 7 aacactgctaagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctggctc 66
|||||| | ||||| ||||| |||||||||||||| ||||| | | ||||| |||||
Sbjct: 72459 aacactaccaagggcaaggtgtgtgtcactggggcttctggctatgttgcctcttggctt 72400
Query: 67 gtcaagcggcttcttgagtctgggtaccatgtcctgggaacagtcagagacccagg 122
|| ||||| ||||||||||| ||||| ||||| || || |||||||||||||||||
Sbjct: 72399 gtgaagcgacttcttgagtcagggtatcatgttcttgggacagtcagagacccagg 72344
Score = 63.9 bits (32), Expect = 2e-007
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 482 agatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggag 541
|||||||||||||| | || |||| || || |||||||||||||||||||||||| |
Sbjct: 71656 agatatggtacgccattgccaagacacttgcagagaaggcagcctgggagttcgccaagg 71597
Query: 542 agcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctc 601
|| || | |||||||| || | |||||||| |||||||| || ||||| | ||||||||
Sbjct: 71596 agaacggcatcgaccttgtggctgttcttccaaccttcgtggttggacccaatctgtctc 71537
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 669 gtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcc 715
|||||||||||||| |||||||||||| |||||||| ||||| ||||
Sbjct: 78316 gtacgggaggatggtgtacgtccacatggacgacgtcgcgagctgcc 78362
Score = 52.0 bits (26), Expect = 6e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 925 gaggagatgttcgacgacgccgtcgcctcg 954
||||||||||||||||||||||||| ||||
Sbjct: 70934 gaggagatgttcgacgacgccgtcgactcg 70905
>gb|AACV01018850.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018850, whole
genome shotgun sequence
Length = 19818
Score = 119 bits (60), Expect = 3e-024
Identities = 156/188 (82%)
Strand = Plus / Minus
Query: 296 tgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaagaagaacccat 355
||||||||||||| ||||||||||| ||||||| || | || ||||||||||||||||
Sbjct: 9374 tgcttgattcagcgataaacggcaccctgaacgttctgagatcatgcaagaagaacccat 9315
Query: 356 cgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaaggacgaagccg 415
| ||||||||||| ||||| || || || || || || |||||| |||| || ||||| |
Sbjct: 9314 ccctcaagagggtagtcctcacctcttcatcatcaaccgtgaggctcaaagatgaagctg 9255
Query: 416 acctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagttctgcgaaa 475
| ||||| || |||||| ||||||| || | || ||||||||||| ||||||||||| |
Sbjct: 9254 atctgccacccaacgtgttgctggatgagacatcatggagctccatggagttctgcgaga 9195
Query: 476 gtctccag 483
||||||||
Sbjct: 9194 gtctccag 9187
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
||||||||||||||| |||| ||||||||||| |||||||| ||||||||||| || ||
Sbjct: 9647 gcaaaggaaaggctggagcttgtgagagctgacctcttggaagaagggagctttgatgat 9588
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcccgtcgtcaccg 274
|||||||||||||| ||||| |||||||| || ||||| || ||| ||||||
Sbjct: 9587 gctgtgatggcttgtgagggtgtcttccatactgcatcacctgtcatcaccg 9536
Score = 85.7 bits (43), Expect = 5e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 657 gaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcca 716
||||||||| | ||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 8755 gaagttcaccatgtacgggaggatggggtacgtccacatcgacgatgtcgcgagctgcca 8696
Query: 717 cat 719
|||
Sbjct: 8695 cat 8693
Score = 79.8 bits (40), Expect = 3e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 7 aacactgctaagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctggctc 66
|||||| | ||||| ||||| |||||||||||||| ||||| | | ||||| |||||
Sbjct: 9908 aacactaccaagggcaaggtgtgtgtcactggggcttctggctatgttgcctcttggctt 9849
Query: 67 gtcaagcggcttcttgagtctgggtaccatgtcctgggaacagtcagagacccagg 122
|| ||||| ||||||||||| ||||| ||||| || || |||||||||||||||||
Sbjct: 9848 gtgaagcgacttcttgagtcagggtatcatgttcttgggacagtcagagacccagg 9793
Score = 63.9 bits (32), Expect = 2e-007
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 482 agatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggag 541
|||||||||||||| | || |||| || || |||||||||||||||||||||||| |
Sbjct: 9105 agatatggtacgccattgccaagacacttgcagagaaggcagcctgggagttcgccaagg 9046
Query: 542 agcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctc 601
|| || | |||||||| || | |||||||| |||||||| || ||||| | ||||||||
Sbjct: 9045 agaacggcatcgaccttgtggctgttcttccaaccttcgtggttggacccaatctgtctc 8986
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 669 gtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcc 715
|||||||||||||| |||||||||||| |||||||| ||||| ||||
Sbjct: 15770 gtacgggaggatggtgtacgtccacatggacgacgtcgcgagctgcc 15816
Score = 52.0 bits (26), Expect = 6e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 925 gaggagatgttcgacgacgccgtcgcctcg 954
||||||||||||||||||||||||| ||||
Sbjct: 8383 gaggagatgttcgacgacgccgtcgactcg 8354
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 119 bits (60), Expect = 3e-024
Identities = 156/188 (82%)
Strand = Plus / Minus
Query: 296 tgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaagaagaacccat 355
||||||||||||| ||||||||||| ||||||| || | || ||||||||||||||||
Sbjct: 25347147 tgcttgattcagcgataaacggcaccctgaacgttctgagatcatgcaagaagaacccat 25347088
Query: 356 cgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaaggacgaagccg 415
| ||||||||||| ||||| || || || || || || |||||| |||| || ||||| |
Sbjct: 25347087 ccctcaagagggtagtcctcacctcttcatcatcaaccgtgaggctcaaagatgaagctg 25347028
Query: 416 acctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagttctgcgaaa 475
| ||||| || |||||| ||||||| || | || ||||||||||| ||||||||||| |
Sbjct: 25347027 atctgccacccaacgtgttgctggatgagacatcatggagctccatggagttctgcgaga 25346968
Query: 476 gtctccag 483
||||||||
Sbjct: 25346967 gtctccag 25346960
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
||||||||||||||| |||| ||||||||||| |||||||| ||||||||||| || ||
Sbjct: 25347420 gcaaaggaaaggctggagcttgtgagagctgacctcttggaagaagggagctttgatgat 25347361
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcccgtcgtcaccg 274
|||||||||||||| ||||| |||||||| || ||||| || ||| ||||||
Sbjct: 25347360 gctgtgatggcttgtgagggtgtcttccatactgcatcacctgtcatcaccg 25347309
Score = 85.7 bits (43), Expect = 5e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 657 gaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcca 716
||||||||| | ||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 25346528 gaagttcaccatgtacgggaggatggggtacgtccacatcgacgatgtcgcgagctgcca 25346469
Query: 717 cat 719
|||
Sbjct: 25346468 cat 25346466
Score = 79.8 bits (40), Expect = 3e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 7 aacactgctaagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctggctc 66
|||||| | ||||| ||||| |||||||||||||| ||||| | | ||||| |||||
Sbjct: 25347681 aacactaccaagggcaaggtgtgtgtcactggggcttctggctatgttgcctcttggctt 25347622
Query: 67 gtcaagcggcttcttgagtctgggtaccatgtcctgggaacagtcagagacccagg 122
|| ||||| ||||||||||| ||||| ||||| || || |||||||||||||||||
Sbjct: 25347621 gtgaagcgacttcttgagtcagggtatcatgttcttgggacagtcagagacccagg 25347566
Score = 63.9 bits (32), Expect = 2e-007
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 482 agatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggag 541
|||||||||||||| | || |||| || || |||||||||||||||||||||||| |
Sbjct: 25346878 agatatggtacgccattgccaagacacttgcagagaaggcagcctgggagttcgccaagg 25346819
Query: 542 agcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctc 601
|| || | |||||||| || | |||||||| |||||||| || ||||| | ||||||||
Sbjct: 25346818 agaacggcatcgaccttgtggctgttcttccaaccttcgtggttggacccaatctgtctc 25346759
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 669 gtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcc 715
|||||||||||||| |||||||||||| |||||||| ||||| ||||
Sbjct: 25353538 gtacgggaggatggtgtacgtccacatggacgacgtcgcgagctgcc 25353584
Score = 52.0 bits (26), Expect = 6e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 925 gaggagatgttcgacgacgccgtcgcctcg 954
||||||||||||||||||||||||| ||||
Sbjct: 25346156 gaggagatgttcgacgacgccgtcgactcg 25346127
Score = 46.1 bits (23), Expect = 0.040
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 235 tgcgagggcgtcttccacaccgc 257
|||||||||||||||||||||||
Sbjct: 10480868 tgcgagggcgtcttccacaccgc 10480890
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 119 bits (60), Expect = 3e-024
Identities = 156/188 (82%)
Strand = Plus / Minus
Query: 296 tgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaagaagaacccat 355
||||||||||||| ||||||||||| ||||||| || | || ||||||||||||||||
Sbjct: 16821208 tgcttgattcagcgataaacggcaccctgaacgttctgagatcatgcaagaagaacccat 16821149
Query: 356 cgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaaggacgaagccg 415
| ||||||||||| ||||| || || || || || || |||||| |||| || ||||| |
Sbjct: 16821148 ccctcaagagggtagtcctcacctcttcatcatcaaccgtgaggctcaaagatgaagctg 16821089
Query: 416 acctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagttctgcgaaa 475
| ||||| || |||||| ||||||| || | || ||||||||||| ||||||||||| |
Sbjct: 16821088 atctgccacccaacgtgttgctggatgagacatcatggagctccatggagttctgcgaga 16821029
Query: 476 gtctccag 483
||||||||
Sbjct: 16821028 gtctccag 16821021
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
||||||||||||||| |||| ||||||||||| |||||||| ||||||||||| || ||
Sbjct: 16821481 gcaaaggaaaggctggagcttgtgagagctgacctcttggaagaagggagctttgatgat 16821422
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcccgtcgtcaccg 274
|||||||||||||| ||||| |||||||| || ||||| || ||| ||||||
Sbjct: 16821421 gctgtgatggcttgtgagggtgtcttccatactgcatcacctgtcatcaccg 16821370
Score = 85.7 bits (43), Expect = 5e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 657 gaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcca 716
||||||||| | ||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 16820589 gaagttcaccatgtacgggaggatggggtacgtccacatcgacgatgtcgcgagctgcca 16820530
Query: 717 cat 719
|||
Sbjct: 16820529 cat 16820527
Score = 79.8 bits (40), Expect = 3e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 7 aacactgctaagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctggctc 66
|||||| | ||||| ||||| |||||||||||||| ||||| | | ||||| |||||
Sbjct: 16821742 aacactaccaagggcaaggtgtgtgtcactggggcttctggctatgttgcctcttggctt 16821683
Query: 67 gtcaagcggcttcttgagtctgggtaccatgtcctgggaacagtcagagacccagg 122
|| ||||| ||||||||||| ||||| ||||| || || |||||||||||||||||
Sbjct: 16821682 gtgaagcgacttcttgagtcagggtatcatgttcttgggacagtcagagacccagg 16821627
Score = 63.9 bits (32), Expect = 2e-007
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 482 agatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggag 541
|||||||||||||| | || |||| || || |||||||||||||||||||||||| |
Sbjct: 16820939 agatatggtacgccattgccaagacacttgcagagaaggcagcctgggagttcgccaagg 16820880
Query: 542 agcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctc 601
|| || | |||||||| || | |||||||| |||||||| || ||||| | ||||||||
Sbjct: 16820879 agaacggcatcgaccttgtggctgttcttccaaccttcgtggttggacccaatctgtctc 16820820
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 669 gtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcc 715
|||||||||||||| |||||||||||| |||||||| ||||| ||||
Sbjct: 16827604 gtacgggaggatggtgtacgtccacatggacgacgtcgcgagctgcc 16827650
Score = 52.0 bits (26), Expect = 6e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 925 gaggagatgttcgacgacgccgtcgcctcg 954
||||||||||||||||||||||||| ||||
Sbjct: 16820217 gaggagatgttcgacgacgccgtcgactcg 16820188
Score = 46.1 bits (23), Expect = 0.040
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 235 tgcgagggcgtcttccacaccgc 257
|||||||||||||||||||||||
Sbjct: 2501579 tgcgagggcgtcttccacaccgc 2501601
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 119 bits (60), Expect = 3e-024
Identities = 156/188 (82%)
Strand = Plus / Minus
Query: 296 tgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaagaagaacccat 355
||||||||||||| ||||||||||| ||||||| || | || ||||||||||||||||
Sbjct: 24423214 tgcttgattcagcgataaacggcaccctgaacgttctgagatcatgcaagaagaacccat 24423155
Query: 356 cgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaaggacgaagccg 415
| ||||||||||| ||||| || || || || || || |||||| |||| || ||||| |
Sbjct: 24423154 ccctcaagagggtagtcctcacctcttcatcatcaaccgtgaggctcaaagatgaagctg 24423095
Query: 416 acctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagttctgcgaaa 475
| ||||| || |||||| ||||||| || | || ||||||||||| ||||||||||| |
Sbjct: 24423094 atctgccacccaacgtgttgctggatgagacatcatggagctccatggagttctgcgaga 24423035
Query: 476 gtctccag 483
||||||||
Sbjct: 24423034 gtctccag 24423027
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
||||||||||||||| |||| ||||||||||| |||||||| ||||||||||| || ||
Sbjct: 24423487 gcaaaggaaaggctggagcttgtgagagctgacctcttggaagaagggagctttgatgat 24423428
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcccgtcgtcaccg 274
|||||||||||||| ||||| |||||||| || ||||| || ||| ||||||
Sbjct: 24423427 gctgtgatggcttgtgagggtgtcttccatactgcatcacctgtcatcaccg 24423376
Score = 85.7 bits (43), Expect = 5e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 657 gaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcca 716
||||||||| | ||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 24422595 gaagttcaccatgtacgggaggatggggtacgtccacatcgacgatgtcgcgagctgcca 24422536
Query: 717 cat 719
|||
Sbjct: 24422535 cat 24422533
Score = 79.8 bits (40), Expect = 3e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 7 aacactgctaagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctggctc 66
|||||| | ||||| ||||| |||||||||||||| ||||| | | ||||| |||||
Sbjct: 24423748 aacactaccaagggcaaggtgtgtgtcactggggcttctggctatgttgcctcttggctt 24423689
Query: 67 gtcaagcggcttcttgagtctgggtaccatgtcctgggaacagtcagagacccagg 122
|| ||||| ||||||||||| ||||| ||||| || || |||||||||||||||||
Sbjct: 24423688 gtgaagcgacttcttgagtcagggtatcatgttcttgggacagtcagagacccagg 24423633
Score = 63.9 bits (32), Expect = 2e-007
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 482 agatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggag 541
|||||||||||||| | || |||| || || |||||||||||||||||||||||| |
Sbjct: 24422945 agatatggtacgccattgccaagacacttgcagagaaggcagcctgggagttcgccaagg 24422886
Query: 542 agcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctc 601
|| || | |||||||| || | |||||||| |||||||| || ||||| | ||||||||
Sbjct: 24422885 agaacggcatcgaccttgtggctgttcttccaaccttcgtggttggacccaatctgtctc 24422826
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 669 gtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcc 715
|||||||||||||| |||||||||||| |||||||| ||||| ||||
Sbjct: 24429610 gtacgggaggatggtgtacgtccacatggacgacgtcgcgagctgcc 24429656
Score = 52.0 bits (26), Expect = 6e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 925 gaggagatgttcgacgacgccgtcgcctcg 954
||||||||||||||||||||||||| ||||
Sbjct: 24422223 gaggagatgttcgacgacgccgtcgactcg 24422194
Score = 46.1 bits (23), Expect = 0.040
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 235 tgcgagggcgtcttccacaccgc 257
|||||||||||||||||||||||
Sbjct: 10103585 tgcgagggcgtcttccacaccgc 10103607
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 119 bits (60), Expect = 3e-024
Identities = 156/188 (82%)
Strand = Plus / Minus
Query: 296 tgcttgattcagcaataaacggcacgatgaacgtgctacgctcgtgcaagaagaacccat 355
||||||||||||| ||||||||||| ||||||| || | || ||||||||||||||||
Sbjct: 25585234 tgcttgattcagcgataaacggcaccctgaacgttctgagatcatgcaagaagaacccat 25585175
Query: 356 cgctcaagagggttgtcctgacatcctcgtcgtcgacagtgaggatcaaggacgaagccg 415
| ||||||||||| ||||| || || || || || || |||||| |||| || ||||| |
Sbjct: 25585174 ccctcaagagggtagtcctcacctcttcatcatcaaccgtgaggctcaaagatgaagctg 25585115
Query: 416 acctgccccctaacgtgctgctggacgaatcgtcgtggagctccatcgagttctgcgaaa 475
| ||||| || |||||| ||||||| || | || ||||||||||| ||||||||||| |
Sbjct: 25585114 atctgccacccaacgtgttgctggatgagacatcatggagctccatggagttctgcgaga 25585055
Query: 476 gtctccag 483
||||||||
Sbjct: 25585054 gtctccag 25585047
Score = 111 bits (56), Expect = 8e-022
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
||||||||||||||| |||| ||||||||||| |||||||| ||||||||||| || ||
Sbjct: 25585507 gcaaaggaaaggctggagcttgtgagagctgacctcttggaagaagggagctttgatgat 25585448
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatcgcccgtcgtcaccg 274
|||||||||||||| ||||| |||||||| || ||||| || ||| ||||||
Sbjct: 25585447 gctgtgatggcttgtgagggtgtcttccatactgcatcacctgtcatcaccg 25585396
Score = 85.7 bits (43), Expect = 5e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 657 gaagttcacgacgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcca 716
||||||||| | ||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 25584615 gaagttcaccatgtacgggaggatggggtacgtccacatcgacgatgtcgcgagctgcca 25584556
Query: 717 cat 719
|||
Sbjct: 25584555 cat 25584553
Score = 79.8 bits (40), Expect = 3e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 7 aacactgctaagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctggctc 66
|||||| | ||||| ||||| |||||||||||||| ||||| | | ||||| |||||
Sbjct: 25585768 aacactaccaagggcaaggtgtgtgtcactggggcttctggctatgttgcctcttggctt 25585709
Query: 67 gtcaagcggcttcttgagtctgggtaccatgtcctgggaacagtcagagacccagg 122
|| ||||| ||||||||||| ||||| ||||| || || |||||||||||||||||
Sbjct: 25585708 gtgaagcgacttcttgagtcagggtatcatgttcttgggacagtcagagacccagg 25585653
Score = 63.9 bits (32), Expect = 2e-007
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 482 agatatggtacgccgtcgcaaagatcctcgccgagaaggcagcctgggagttcgccggag 541
|||||||||||||| | || |||| || || |||||||||||||||||||||||| |
Sbjct: 25584965 agatatggtacgccattgccaagacacttgcagagaaggcagcctgggagttcgccaagg 25584906
Query: 542 agcacaggatcgacctcgtcaccgttcttccgaccttcgttgtcggacctactctgtctc 601
|| || | |||||||| || | |||||||| |||||||| || ||||| | ||||||||
Sbjct: 25584905 agaacggcatcgaccttgtggctgttcttccaaccttcgtggttggacccaatctgtctc 25584846
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 669 gtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcc 715
|||||||||||||| |||||||||||| |||||||| ||||| ||||
Sbjct: 25591625 gtacgggaggatggtgtacgtccacatggacgacgtcgcgagctgcc 25591671
Score = 52.0 bits (26), Expect = 6e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 925 gaggagatgttcgacgacgccgtcgcctcg 954
||||||||||||||||||||||||| ||||
Sbjct: 25584243 gaggagatgttcgacgacgccgtcgactcg 25584214
Score = 46.1 bits (23), Expect = 0.040
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 235 tgcgagggcgtcttccacaccgc 257
|||||||||||||||||||||||
Sbjct: 10713342 tgcgagggcgtcttccacaccgc 10713364
>gb|AQ867193.1|AQ867193 nbeb0031C01f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0031C01f, DNA sequence
Length = 605
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 163 gcaaaggaaaggctgcagctcgtgagagctgatctcttggaggaagggagcttcgacgac 222
||||||||||||||| |||| ||||||||||| |||||||| ||||||||||| || ||
Sbjct: 221 gcaaaggaaaggctggagcttgtgagagctgacctcttggaagaagggagctttgatgat 162
Query: 223 gctgtgatggcttgcgagggcgtcttccacaccgcatc 260
|||||||||||||| ||||| |||||||| || |||||
Sbjct: 161 gctgtgatggcttgtgagggtgtcttccatactgcatc 124
Score = 79.8 bits (40), Expect = 3e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 7 aacactgctaagggtaaggtctgtgtcactggggcgtctggtttcatcgcctcctggctc 66
|||||| | ||||| ||||| |||||||||||||| ||||| | | ||||| |||||
Sbjct: 482 aacactaccaagggcaaggtgtgtgtcactggggcttctggctatgttgcctcttggctt 423
Query: 67 gtcaagcggcttcttgagtctgggtaccatgtcctgggaacagtcagagacccagg 122
|| ||||| ||||||||||| ||||| ||||| || || |||||||||||||||||
Sbjct: 422 gtgaagcgacttcttgagtcagggtatcatgttcttgggacagtcagagacccagg 367
>ref|NM_189001.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 333
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 669 gtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgcc 715
|||||||||||||| |||||||||||| |||||||| ||||| ||||
Sbjct: 75 gtacgggaggatggtgtacgtccacatggacgacgtcgcgagctgcc 121
>gb|AU312203.1|AU312203 AU312203 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1891, mRNA sequence
Length = 757
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 668 cgtacgggaggatggggtacgtccacatcgacgacgtggcgaggtgccacatgctggcgt 727
|||| ||||| ||||| || || ||||||||||| |||||||| |||||||| |||| ||
Sbjct: 506 cgtatgggagaatgggatatgttcacatcgacgatgtggcgagctgccacattctggtgt 447
Query: 728 acga 731
||||
Sbjct: 446 acga 443
>gb|AACV01020321.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020321, whole
genome shotgun sequence
Length = 5887
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||||
Sbjct: 1878 ttcatcgcctcctggctcgtcaagc 1854
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNBb0052C07, complete sequence
Length = 154528
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 ttcatcgcctcctggctcgtcaagc 73
|||||||||||||||||||||||||
Sbjct: 6434 ttcatcgcctcctggctcgtcaagc 6458
>dbj|AP004655.2| Oryza sativa (japonica cultivar-group) chromosome 8 clone P0019C09, ***
SEQUENCING IN PROGRESS ***
Length = 151928
Score = 46.1 bits (23), Expect = 0.040
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 235 tgcgagggcgtcttccacaccgc 257
|||||||||||||||||||||||
Sbjct: 146606 tgcgagggcgtcttccacaccgc 146584
>dbj|AK106439.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D08, full
insert sequence
Length = 1420
Score = 46.1 bits (23), Expect = 0.040
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 235 tgcgagggcgtcttccacaccgc 257
|||||||||||||||||||||||
Sbjct: 421 tgcgagggcgtcttccacaccgc 443
>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0091M20
Length = 132976
Score = 46.1 bits (23), Expect = 0.040
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 235 tgcgagggcgtcttccacaccgc 257
|||||||||||||||||||||||
Sbjct: 10474 tgcgagggcgtcttccacaccgc 10496
>gb|AACV01017860.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017860, whole
genome shotgun sequence
Length = 40232
Score = 46.1 bits (23), Expect = 0.040
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 235 tgcgagggcgtcttccacaccgc 257
|||||||||||||||||||||||
Sbjct: 33876 tgcgagggcgtcttccacaccgc 33854
>ref|XM_481219.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1420
Score = 46.1 bits (23), Expect = 0.040
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 235 tgcgagggcgtcttccacaccgc 257
|||||||||||||||||||||||
Sbjct: 421 tgcgagggcgtcttccacaccgc 443
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,540,592
Number of Sequences: 438736
Number of extensions: 1540592
Number of successful extensions: 15929
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15528
Number of HSP's gapped (non-prelim): 392
length of query: 1079
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1058
effective length of database: 2,791,206,460
effective search space: 2953096434680
effective search space used: 2953096434680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)