BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115097.2.2
(1086 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA... 256 2e-065
ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA 256 2e-065
dbj|AP004587.3| Oryza sativa (japonica cultivar-group) geno... 178 4e-042
dbj|AP005544.3| Oryza sativa (japonica cultivar-group) geno... 178 4e-042
gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) c... 178 4e-042
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 178 4e-042
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 178 4e-042
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 178 4e-042
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 178 4e-042
dbj|AK071328.1| Oryza sativa (japonica cultivar-group) cDNA... 117 1e-023
gb|AY100692.1| Oryza sativa (japonica cultivar-group) alpha... 117 1e-023
gb|AACV01000668.1| Oryza sativa (japonica cultivar-group) c... 111 8e-022
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 111 8e-022
ref|XM_493787.1| Oryza sativa (japonica cultivar-group), Oz... 111 8e-022
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 111 8e-022
dbj|AP000837.1| Oryza sativa (japonica cultivar-group) geno... 111 8e-022
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 111 8e-022
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 111 8e-022
gb|DQ062981.1| Oryza sativa (japonica cultivar-group) alpha... 111 8e-022
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 111 8e-022
gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (j... 90 3e-015
dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA... 90 3e-015
dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA... 90 3e-015
ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA 90 3e-015
ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-... 90 3e-015
gb|AQ863234.1|AQ863234 nbeb0020H17f CUGI Rice BAC Library (... 82 7e-013
gb|AU172682.1|AU172682 AU172682 Rice panicle at flowering s... 82 7e-013
emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC O... 82 7e-013
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 82 7e-013
gb|AACV01025197.1| Oryza sativa (japonica cultivar-group) c... 82 7e-013
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 82 7e-013
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 82 7e-013
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 82 7e-013
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 82 7e-013
ref|XM_470717.1| Oryza sativa (japonica cultivar-group), mRNA 70 3e-009
gb|DQ061062.1| Oryza sativa (japonica cultivar-group) alpha... 70 3e-009
gb|AU222840.1|AU222840 AU222840 Rice shoot Oryza sativa (ja... 66 4e-008
gb|CV723142.1|CV723142 root--02-K01.g1 Rice root lambda pha... 66 4e-008
emb|Y07782.1|OSEXPANSI Oryza sativa expansin (Os-EXP-1) mRN... 66 4e-008
dbj|AK060313.1| Oryza sativa (japonica cultivar-group) cDNA... 66 4e-008
dbj|AK069548.1| Oryza sativa (japonica cultivar-group) cDNA... 66 4e-008
gb|AC130731.2| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|AC145273.2| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
gb|AACV01008335.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
gb|AACV01011538.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
gb|AACV01025196.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
ref|XM_474982.1| Oryza sativa (japonica cultivar-group), p... 66 4e-008
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 66 4e-008
ref|NT_107205.1| Oryza sativa (japonica cultivar-group) 66 4e-008
ref|NT_107229.1| Oryza sativa (japonica cultivar-group) 66 4e-008
dbj|AP004114.3| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
dbj|AP005297.3| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
gb|CH401200.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|CH401180.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
emb|AL731598.2|OSJN00248 Oryza sativa genomic DNA, chromoso... 66 4e-008
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
gb|C72427.1|C72427 C72427 Rice panicle at flowering stage O... 62 7e-007
dbj|AK070463.1| Oryza sativa (japonica cultivar-group) cDNA... 62 7e-007
dbj|AK101784.1| Oryza sativa (japonica cultivar-group) cDNA... 62 7e-007
dbj|AK119215.1| Oryza sativa (japonica cultivar-group) cDNA... 62 7e-007
gb|U30477.1|OSU30477 Oryza sativa (japonica cultivar-group)... 62 7e-007
ref|NM_185168.1| Oryza sativa (japonica cultivar-group), mRNA 62 7e-007
ref|NM_190380.1| Oryza sativa (japonica cultivar-group), p... 62 7e-007
dbj|AK111273.1| Oryza sativa (japonica cultivar-group) cDNA... 60 3e-006
gb|AC087550.3| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 ... 60 3e-006
ref|NM_196686.1| Oryza sativa (japonica cultivar-group) put... 60 3e-006
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 60 3e-006
ref|XM_468791.1| Oryza sativa (japonica cultivar-group), mRNA 60 3e-006
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 60 3e-006
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05... 58 1e-005
gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 ... 58 1e-005
gb|U30479.1|OSU30479 Oryza sativa (japonica cultivar-group)... 58 1e-005
gb|AACV01006741.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|AACV01021998.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
ref|NM_197539.1| Oryza sativa (japonica cultivar-group) put... 58 1e-005
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 58 1e-005
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 58 1e-005
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|D42004.1|D42004 RICS5074A Rice shoot Oryza sativa (japon... 56 4e-005
gb|AU172681.1|AU172681 AU172681 Rice panicle at flowering s... 54 2e-004
gb|AU182573.1|AU182573 AU182573 Rice panicle at flowering s... 54 2e-004
dbj|AP004128.1| Oryza sativa (japonica cultivar-group) chro... 52 6e-004
gb|AACV01003830.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
gb|AACV01006963.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
dbj|AP005428.2| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 52 6e-004
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
gb|CG408353.1|CG408353 Ds43 Ds insertion lines Oryza sativa... 50 0.003
gb|AU069455.1|AU069455 AU069455 Rice callus Oryza sativa (j... 50 0.003
gb|AU069463.1|AU069463 AU069463 Rice callus Oryza sativa (j... 50 0.003
gb|CB645780.1|CB645780 OSJNEb07L24.r OSJNEb Oryza sativa (j... 50 0.003
gb|C25440.2|C25440 C25440 Rice shoot Oryza sativa (japonica... 50 0.003
dbj|AB033663.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.003
dbj|AK062225.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
dbj|AK066414.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
dbj|AK070133.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
dbj|AK107698.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic seque... 50 0.003
gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 gen... 50 0.003
gb|AC105730.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|AC134233.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
dbj|AP007206.1| Oryza sativa (japonica cultivar-group) chro... 50 0.003
dbj|AP003769.3| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|AACV01000580.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01003829.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01005896.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01010380.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01011535.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01014938.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01019807.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
dbj|AP000616.2| Oryza sativa (japonica cultivar-group) geno... 50 0.003
ref|XM_473658.1| Oryza sativa (japonica cultivar-group), p... 50 0.003
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 50 0.003
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 50 0.003
ref|NM_188792.1| Oryza sativa (japonica cultivar-group), p... 50 0.003
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 50 0.003
ref|NM_185356.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.003
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 50 0.003
dbj|AP002865.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromoso... 50 0.003
gb|DQ061054.1| Oryza sativa (japonica cultivar-group) alpha... 50 0.003
gb|DQ061055.1| Oryza sativa (japonica cultivar-group) alpha... 50 0.003
gb|DQ061058.1| Oryza sativa (japonica cultivar-group) alpha... 50 0.003
gb|DQ061068.1| Oryza sativa (japonica cultivar-group) alpha... 50 0.003
gb|AC125496.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|D41419.1|D41419 RICS3911A Rice shoot Oryza sativa (japon... 48 0.010
gb|AU078737.1|AU078737 AU078737 Rice shoot Oryza sativa (ja... 48 0.010
dbj|AK111100.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.010
dbj|AP005176.3| Oryza sativa (japonica cultivar-group) geno... 48 0.010
gb|AACV01002595.1| Oryza sativa (japonica cultivar-group) c... 48 0.010
gb|AACV01016370.1| Oryza sativa (japonica cultivar-group) c... 48 0.010
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 48 0.010
ref|NM_188790.1| Oryza sativa (japonica cultivar-group), p... 48 0.010
dbj|AP003348.3| Oryza sativa (japonica cultivar-group) geno... 48 0.010
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.010
dbj|AP003230.4| Oryza sativa (japonica cultivar-group) geno... 48 0.010
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.010
gb|D39423.1|D39423 RICS0736A Rice shoot Oryza sativa (japon... 46 0.040
gb|AU069357.1|AU069357 AU069357 Rice callus Oryza sativa (j... 46 0.040
gb|CV730571.1|CV730571 FLO--04-C21.b1 Rice flower lambda ph... 46 0.040
dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.040
dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.040
gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OS... 46 0.040
gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OS... 46 0.040
gb|AC114828.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.040
emb|AL731578.2|OSJN00229 Oryza sativa genomic DNA, chromoso... 46 0.040
dbj|AP005766.3| Oryza sativa (japonica cultivar-group) geno... 46 0.040
dbj|AP005100.4| Oryza sativa (japonica cultivar-group) geno... 46 0.040
ref|NT_107132.1| Oryza sativa (japonica cultivar-group) 46 0.040
ref|NT_107144.1| Oryza sativa (japonica cultivar-group) 46 0.040
ref|NT_107099.1| Oryza sativa (japonica cultivar-group) chr... 46 0.040
gb|AACV01009012.1| Oryza sativa (japonica cultivar-group) c... 46 0.040
gb|AACV01011794.1| Oryza sativa (japonica cultivar-group) c... 46 0.040
gb|AACV01012011.1| Oryza sativa (japonica cultivar-group) c... 46 0.040
gb|AACV01015787.1| Oryza sativa (japonica cultivar-group) c... 46 0.040
gb|AACV01021633.1| Oryza sativa (japonica cultivar-group) c... 46 0.040
gb|AACV01023537.1| Oryza sativa (japonica cultivar-group) c... 46 0.040
gb|AACV01028912.1| Oryza sativa (japonica cultivar-group) C... 46 0.040
gb|AACV01034103.1| Oryza sativa (japonica cultivar-group) C... 46 0.040
gb|AC137747.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.040
gb|AC137748.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.040
ref|XM_475418.1| Oryza sativa (japonica cultivar-group), p... 46 0.040
ref|NT_079855.2| Oryza sativa (japonica cultivar-group) 46 0.040
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 46 0.040
gb|CH402048.1| Oryza sativa (japonica cultivar-group) scaff... 46 0.040
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.040
gb|CH401222.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.040
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.040
gb|CH401205.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.040
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.040
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.040
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 46 0.040
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.040
dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chro... 44 0.16
dbj|AK101940.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.16
dbj|AP005196.4| Oryza sativa (japonica cultivar-group) geno... 44 0.16
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 44 0.16
dbj|AP003539.3| Oryza sativa (japonica cultivar-group) geno... 44 0.16
gb|AACV01006557.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|AACV01009919.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|AACV01014579.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|AACV01016366.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|DQ061056.1| Oryza sativa (japonica cultivar-group) alpha... 44 0.16
gb|DQ061065.1| Oryza sativa (japonica cultivar-group) alpha... 44 0.16
>dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052B04, full
insert sequence
Length = 1088
Score = 256 bits (129), Expect = 2e-065
Identities = 345/417 (82%)
Strand = Plus / Plus
Query: 444 gacagcggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttc 503
|||| |||||| ||||||||||||||||| |||||||| |||||| |||||| || ||
Sbjct: 467 gacaacggcggctggtgcaacccgccgcgcgagcactttgacctctccatgccggccttt 526
Query: 504 ctccagatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgc 563
|| |||||||| |||||||||||||||||||||||||| || ||| | ||||| ||||
Sbjct: 527 ctgcagatcgcgcaggagaaggccggcatcgtgcccatatcgtacagacgggtgccgtgt 586
Query: 564 acgaagcagggcggcatccggtacaccatcaccgggaacaagtacttcaacatggtgacg 623
|||| ||| || ||| ||||||| || ||||||||| |||||||||| |||||| |
Sbjct: 587 gtgaaggtgggtgggatcaggtacacgataaccgggaacccgtacttcaacctggtgatg 646
Query: 624 atcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtgaaggggagcaagcgc 683
| | ||||| ||||| || || ||| | || | | | ||||||||||||| |||| |
Sbjct: 647 gtgtcgaacgtgggcggggcgggtgacgtggcagggctatcggtgaaggggaacaagagg 706
Query: 684 gttaagtggacggagatgaagcgcaactgggggcaagtgtggcagaccggggaggacctc 743
|| |||||||| | ||||||||||||||||||| | ||||||||| ||||| ||||
Sbjct: 707 gtgaagtggactccgctgaagcgcaactgggggcaggagtggcagacgtcggaggtcctc 766
Query: 744 acctgcgagtcgctgacgttccgggtgatgactagcgaccaccgcaaggccacctcatgg 803
||| | ||||||||||||||| |||||||||| |||||||||||||||||||||| |||
Sbjct: 767 accggagagtcgctgacgttcagggtgatgaccggcgaccaccgcaaggccacctcctgg 826
Query: 804 cacgttctccccgctgactggaagttcggcgtcacgtaccaggcgtccaagaacttc 860
||||| |||||| | |||||| ||||||||||||| |||||||| |||||||||||
Sbjct: 827 cacgtcctcccccccgactggcagttcggcgtcacctaccaggctaccaagaacttc 883
Score = 137 bits (69), Expect = 1e-029
Identities = 176/212 (83%)
Strand = Plus / Plus
Query: 153 aaccacggcaagttcacggctgggccgnggaaacccgcccacgcgaccttctacggcggg 212
|||||||||||||||||||| ||||| |||| | || |||||||| ||||||||||||
Sbjct: 176 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 235
Query: 213 cgggatgggtccggcaccacggcgggcgcgtgcgggtacaaggacacgcgcgcgcagggg 272
|| || ||||||||||| || |||||||||||||||||||||||| | | | ||
Sbjct: 236 cgcgacgggtccggcacgctggacggcgcgtgcgggtacaaggacacgtccaaggaaggc 295
Query: 273 tatggcgtgcagacggtggccgtgagcacggtgctgttcggtgacggcgcggcctgcggc 332
|| ||||||||||||||||| ||||||||| ||||||||| | |||||| | |||||||
Sbjct: 296 tacggcgtgcagacggtggcggtgagcacgccgctgttcggcgccggcgccggctgcggc 355
Query: 333 gggtgctacgaggtgcgctgcgtggacagccc 364
| ||||||||||| ||||||||||||||
Sbjct: 356 gcctgctacgaggtcaagtgcgtggacagccc 387
>ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1088
Score = 256 bits (129), Expect = 2e-065
Identities = 345/417 (82%)
Strand = Plus / Plus
Query: 444 gacagcggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttc 503
|||| |||||| ||||||||||||||||| |||||||| |||||| |||||| || ||
Sbjct: 467 gacaacggcggctggtgcaacccgccgcgcgagcactttgacctctccatgccggccttt 526
Query: 504 ctccagatcgcacaggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgc 563
|| |||||||| |||||||||||||||||||||||||| || ||| | ||||| ||||
Sbjct: 527 ctgcagatcgcgcaggagaaggccggcatcgtgcccatatcgtacagacgggtgccgtgt 586
Query: 564 acgaagcagggcggcatccggtacaccatcaccgggaacaagtacttcaacatggtgacg 623
|||| ||| || ||| ||||||| || ||||||||| |||||||||| |||||| |
Sbjct: 587 gtgaaggtgggtgggatcaggtacacgataaccgggaacccgtacttcaacctggtgatg 646
Query: 624 atcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtgaaggggagcaagcgc 683
| | ||||| ||||| || || ||| | || | | | ||||||||||||| |||| |
Sbjct: 647 gtgtcgaacgtgggcggggcgggtgacgtggcagggctatcggtgaaggggaacaagagg 706
Query: 684 gttaagtggacggagatgaagcgcaactgggggcaagtgtggcagaccggggaggacctc 743
|| |||||||| | ||||||||||||||||||| | ||||||||| ||||| ||||
Sbjct: 707 gtgaagtggactccgctgaagcgcaactgggggcaggagtggcagacgtcggaggtcctc 766
Query: 744 acctgcgagtcgctgacgttccgggtgatgactagcgaccaccgcaaggccacctcatgg 803
||| | ||||||||||||||| |||||||||| |||||||||||||||||||||| |||
Sbjct: 767 accggagagtcgctgacgttcagggtgatgaccggcgaccaccgcaaggccacctcctgg 826
Query: 804 cacgttctccccgctgactggaagttcggcgtcacgtaccaggcgtccaagaacttc 860
||||| |||||| | |||||| ||||||||||||| |||||||| |||||||||||
Sbjct: 827 cacgtcctcccccccgactggcagttcggcgtcacctaccaggctaccaagaacttc 883
Score = 137 bits (69), Expect = 1e-029
Identities = 176/212 (83%)
Strand = Plus / Plus
Query: 153 aaccacggcaagttcacggctgggccgnggaaacccgcccacgcgaccttctacggcggg 212
|||||||||||||||||||| ||||| |||| | || |||||||| ||||||||||||
Sbjct: 176 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 235
Query: 213 cgggatgggtccggcaccacggcgggcgcgtgcgggtacaaggacacgcgcgcgcagggg 272
|| || ||||||||||| || |||||||||||||||||||||||| | | | ||
Sbjct: 236 cgcgacgggtccggcacgctggacggcgcgtgcgggtacaaggacacgtccaaggaaggc 295
Query: 273 tatggcgtgcagacggtggccgtgagcacggtgctgttcggtgacggcgcggcctgcggc 332
|| ||||||||||||||||| ||||||||| ||||||||| | |||||| | |||||||
Sbjct: 296 tacggcgtgcagacggtggcggtgagcacgccgctgttcggcgccggcgccggctgcggc 355
Query: 333 gggtgctacgaggtgcgctgcgtggacagccc 364
| ||||||||||| ||||||||||||||
Sbjct: 356 gcctgctacgaggtcaagtgcgtggacagccc 387
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0543D10
Length = 134866
Score = 178 bits (90), Expect = 4e-042
Identities = 171/198 (86%)
Strand = Plus / Plus
Query: 663 tcggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtg 722
||||||||||||| |||| | || |||||||| | ||||||||||||||||||| | |
Sbjct: 14539 tcggtgaaggggaacaagagggtgaagtggactccgctgaagcgcaactgggggcaggag 14598
Query: 723 tggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgac 782
|||||||| ||||| ||||||| | ||||||||||||||| |||||||||| |||||
Sbjct: 14599 tggcagacgtcggaggtcctcaccggagagtcgctgacgttcagggtgatgaccggcgac 14658
Query: 783 caccgcaaggccacctcatggcacgttctccccgctgactggaagttcggcgtcacgtac 842
||||||||||||||||| |||||||| |||||| | |||||| ||||||||||||| |||
Sbjct: 14659 caccgcaaggccacctcctggcacgtcctcccccccgactggcagttcggcgtcacctac 14718
Query: 843 caggcgtccaagaacttc 860
||||| |||||||||||
Sbjct: 14719 caggctaccaagaacttc 14736
Score = 137 bits (69), Expect = 1e-029
Identities = 176/212 (83%)
Strand = Plus / Plus
Query: 153 aaccacggcaagttcacggctgggccgnggaaacccgcccacgcgaccttctacggcggg 212
|||||||||||||||||||| ||||| |||| | || |||||||| ||||||||||||
Sbjct: 13954 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 14013
Query: 213 cgggatgggtccggcaccacggcgggcgcgtgcgggtacaaggacacgcgcgcgcagggg 272
|| || ||||||||||| || |||||||||||||||||||||||| | | | ||
Sbjct: 14014 cgcgacgggtccggcacgctggacggcgcgtgcgggtacaaggacacgtccaaggaaggc 14073
Query: 273 tatggcgtgcagacggtggccgtgagcacggtgctgttcggtgacggcgcggcctgcggc 332
|| ||||||||||||||||| ||||||||| ||||||||| | |||||| | |||||||
Sbjct: 14074 tacggcgtgcagacggtggcggtgagcacgccgctgttcggcgccggcgccggctgcggc 14133
Query: 333 gggtgctacgaggtgcgctgcgtggacagccc 364
| ||||||||||| ||||||||||||||
Sbjct: 14134 gcctgctacgaggtcaagtgcgtggacagccc 14165
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 444 gacagcggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttc 503
|||| |||||| ||||||||||||||||| |||||||| |||||| |||||| || ||
Sbjct: 14245 gacaacggcggctggtgcaacccgccgcgcgagcactttgacctctccatgccggccttt 14304
Query: 504 ctccagatcgcacaggagaaggccggcatcgtgcccat 541
|| |||||||| ||||||||||||||||||||||||||
Sbjct: 14305 ctgcagatcgcgcaggagaaggccggcatcgtgcccat 14342
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0604E01
Length = 159049
Score = 178 bits (90), Expect = 4e-042
Identities = 171/198 (86%)
Strand = Plus / Plus
Query: 663 tcggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtg 722
||||||||||||| |||| | || |||||||| | ||||||||||||||||||| | |
Sbjct: 128561 tcggtgaaggggaacaagagggtgaagtggactccgctgaagcgcaactgggggcaggag 128620
Query: 723 tggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgac 782
|||||||| ||||| ||||||| | ||||||||||||||| |||||||||| |||||
Sbjct: 128621 tggcagacgtcggaggtcctcaccggagagtcgctgacgttcagggtgatgaccggcgac 128680
Query: 783 caccgcaaggccacctcatggcacgttctccccgctgactggaagttcggcgtcacgtac 842
||||||||||||||||| |||||||| |||||| | |||||| ||||||||||||| |||
Sbjct: 128681 caccgcaaggccacctcctggcacgtcctcccccccgactggcagttcggcgtcacctac 128740
Query: 843 caggcgtccaagaacttc 860
||||| |||||||||||
Sbjct: 128741 caggctaccaagaacttc 128758
Score = 137 bits (69), Expect = 1e-029
Identities = 176/212 (83%)
Strand = Plus / Plus
Query: 153 aaccacggcaagttcacggctgggccgnggaaacccgcccacgcgaccttctacggcggg 212
|||||||||||||||||||| ||||| |||| | || |||||||| ||||||||||||
Sbjct: 127976 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 128035
Query: 213 cgggatgggtccggcaccacggcgggcgcgtgcgggtacaaggacacgcgcgcgcagggg 272
|| || ||||||||||| || |||||||||||||||||||||||| | | | ||
Sbjct: 128036 cgcgacgggtccggcacgctggacggcgcgtgcgggtacaaggacacgtccaaggaaggc 128095
Query: 273 tatggcgtgcagacggtggccgtgagcacggtgctgttcggtgacggcgcggcctgcggc 332
|| ||||||||||||||||| ||||||||| ||||||||| | |||||| | |||||||
Sbjct: 128096 tacggcgtgcagacggtggcggtgagcacgccgctgttcggcgccggcgccggctgcggc 128155
Query: 333 gggtgctacgaggtgcgctgcgtggacagccc 364
| ||||||||||| ||||||||||||||
Sbjct: 128156 gcctgctacgaggtcaagtgcgtggacagccc 128187
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 444 gacagcggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttc 503
|||| |||||| ||||||||||||||||| |||||||| |||||| |||||| || ||
Sbjct: 128267 gacaacggcggctggtgcaacccgccgcgcgagcactttgacctctccatgccggccttt 128326
Query: 504 ctccagatcgcacaggagaaggccggcatcgtgcccat 541
|| |||||||| ||||||||||||||||||||||||||
Sbjct: 128327 ctgcagatcgcgcaggagaaggccggcatcgtgcccat 128364
>gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018997, whole
genome shotgun sequence
Length = 21087
Score = 178 bits (90), Expect = 4e-042
Identities = 171/198 (86%)
Strand = Plus / Minus
Query: 663 tcggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtg 722
||||||||||||| |||| | || |||||||| | ||||||||||||||||||| | |
Sbjct: 12273 tcggtgaaggggaacaagagggtgaagtggactccgctgaagcgcaactgggggcaggag 12214
Query: 723 tggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgac 782
|||||||| ||||| ||||||| | ||||||||||||||| |||||||||| |||||
Sbjct: 12213 tggcagacgtcggaggtcctcaccggagagtcgctgacgttcagggtgatgaccggcgac 12154
Query: 783 caccgcaaggccacctcatggcacgttctccccgctgactggaagttcggcgtcacgtac 842
||||||||||||||||| |||||||| |||||| | |||||| ||||||||||||| |||
Sbjct: 12153 caccgcaaggccacctcctggcacgtcctcccccccgactggcagttcggcgtcacctac 12094
Query: 843 caggcgtccaagaacttc 860
||||| |||||||||||
Sbjct: 12093 caggctaccaagaacttc 12076
Score = 129 bits (65), Expect = 3e-027
Identities = 175/212 (82%)
Strand = Plus / Minus
Query: 153 aaccacggcaagttcacggctgggccgnggaaacccgcccacgcgaccttctacggcggg 212
|||||||||||||||||||| ||||| |||| | || |||||||| ||||||||||||
Sbjct: 12858 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 12799
Query: 213 cgggatgggtccggcaccacggcgggcgcgtgcgggtacaaggacacgcgcgcgcagggg 272
|| || ||||||||||| || |||||||||||||||||||||||| | | | ||
Sbjct: 12798 cgcgacgggtccggcacgctggacggcgcgtgcgggtacaaggacacgtccaaggaaggc 12739
Query: 273 tatggcgtgcagacggtggccgtgagcacggtgctgttcggtgacggcgcggcctgcggc 332
|| ||||||||||||||||| ||||||||| ||||||||| | | |||| | |||||||
Sbjct: 12738 tacggcgtgcagacggtggcggtgagcacgccgctgttcggcgcctgcgccggctgcggc 12679
Query: 333 gggtgctacgaggtgcgctgcgtggacagccc 364
| ||||||||||| ||||||||||||||
Sbjct: 12678 gcctgctacgaggtcaagtgcgtggacagccc 12647
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 444 gacagcggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttc 503
|||| |||||| ||||||||||||||||| |||||||| |||||| |||||| || ||
Sbjct: 12567 gacaacggcggctggtgcaacccgccgcgcgagcactttgacctctccatgccggccttt 12508
Query: 504 ctccagatcgcacaggagaaggccggcatcgtgcccat 541
|| |||||||| ||||||||||||||||||||||||||
Sbjct: 12507 ctgcagatcgcgcaggagaaggccggcatcgtgcccat 12470
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 178 bits (90), Expect = 4e-042
Identities = 171/198 (86%)
Strand = Plus / Plus
Query: 663 tcggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtg 722
||||||||||||| |||| | || |||||||| | ||||||||||||||||||| | |
Sbjct: 27892979 tcggtgaaggggaacaagagggtgaagtggactccgctgaagcgcaactgggggcaggag 27893038
Query: 723 tggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgac 782
|||||||| ||||| ||||||| | ||||||||||||||| |||||||||| |||||
Sbjct: 27893039 tggcagacgtcggaggtcctcaccggagagtcgctgacgttcagggtgatgaccggcgac 27893098
Query: 783 caccgcaaggccacctcatggcacgttctccccgctgactggaagttcggcgtcacgtac 842
||||||||||||||||| |||||||| |||||| | |||||| ||||||||||||| |||
Sbjct: 27893099 caccgcaaggccacctcctggcacgtcctcccccccgactggcagttcggcgtcacctac 27893158
Query: 843 caggcgtccaagaacttc 860
||||| |||||||||||
Sbjct: 27893159 caggctaccaagaacttc 27893176
Score = 137 bits (69), Expect = 1e-029
Identities = 176/212 (83%)
Strand = Plus / Plus
Query: 153 aaccacggcaagttcacggctgggccgnggaaacccgcccacgcgaccttctacggcggg 212
|||||||||||||||||||| ||||| |||| | || |||||||| ||||||||||||
Sbjct: 27892394 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 27892453
Query: 213 cgggatgggtccggcaccacggcgggcgcgtgcgggtacaaggacacgcgcgcgcagggg 272
|| || ||||||||||| || |||||||||||||||||||||||| | | | ||
Sbjct: 27892454 cgcgacgggtccggcacgctggacggcgcgtgcgggtacaaggacacgtccaaggaaggc 27892513
Query: 273 tatggcgtgcagacggtggccgtgagcacggtgctgttcggtgacggcgcggcctgcggc 332
|| ||||||||||||||||| ||||||||| ||||||||| | |||||| | |||||||
Sbjct: 27892514 tacggcgtgcagacggtggcggtgagcacgccgctgttcggcgccggcgccggctgcggc 27892573
Query: 333 gggtgctacgaggtgcgctgcgtggacagccc 364
| ||||||||||| ||||||||||||||
Sbjct: 27892574 gcctgctacgaggtcaagtgcgtggacagccc 27892605
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 444 gacagcggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttc 503
|||| |||||| ||||||||||||||||| |||||||| |||||| |||||| || ||
Sbjct: 27892685 gacaacggcggctggtgcaacccgccgcgcgagcactttgacctctccatgccggccttt 27892744
Query: 504 ctccagatcgcacaggagaaggccggcatcgtgcccat 541
|| |||||||| ||||||||||||||||||||||||||
Sbjct: 27892745 ctgcagatcgcgcaggagaaggccggcatcgtgcccat 27892782
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 178 bits (90), Expect = 4e-042
Identities = 171/198 (86%)
Strand = Plus / Plus
Query: 663 tcggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtg 722
||||||||||||| |||| | || |||||||| | ||||||||||||||||||| | |
Sbjct: 19206467 tcggtgaaggggaacaagagggtgaagtggactccgctgaagcgcaactgggggcaggag 19206526
Query: 723 tggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgac 782
|||||||| ||||| ||||||| | ||||||||||||||| |||||||||| |||||
Sbjct: 19206527 tggcagacgtcggaggtcctcaccggagagtcgctgacgttcagggtgatgaccggcgac 19206586
Query: 783 caccgcaaggccacctcatggcacgttctccccgctgactggaagttcggcgtcacgtac 842
||||||||||||||||| |||||||| |||||| | |||||| ||||||||||||| |||
Sbjct: 19206587 caccgcaaggccacctcctggcacgtcctcccccccgactggcagttcggcgtcacctac 19206646
Query: 843 caggcgtccaagaacttc 860
||||| |||||||||||
Sbjct: 19206647 caggctaccaagaacttc 19206664
Score = 129 bits (65), Expect = 3e-027
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 153 aaccacggcaagttcacggctgggccgnggaaacccgcccacgcgaccttctacggcggg 212
|||||||||||||||||||| ||||| |||| | || |||||||| ||||||||||||
Sbjct: 19205882 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 19205941
Query: 213 cgggatgggtccggcaccacggcgggcgcgtgcgggtacaaggacacgcgcgcgcagggg 272
|| || ||||||||||| || |||||||||||||||||||||||| | | | ||
Sbjct: 19205942 cgcgacgggtccggcacgctggacggcgcgtgcgggtacaaggacacgtccaaggaaggc 19206001
Query: 273 tatggcgtgcagacggtggccgtgagcacggtgctgttcggtgacggcgcggcctgcggc 332
|| ||||||||||||||||| ||||||||| ||||||||| | | |||| | |||||||
Sbjct: 19206002 tacggcgtgcagacggtggcggtgagcacgccgctgttcggcgcctgcgccggctgcggc 19206061
Query: 333 gggtgctacgaggtgcgctgcgtggacagccc 364
| ||||||||||| ||||||||||||||
Sbjct: 19206062 gcctgctacgaggtcaagtgcgtggacagccc 19206093
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 444 gacagcggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttc 503
|||| |||||| ||||||||||||||||| |||||||| |||||| |||||| || ||
Sbjct: 19206173 gacaacggcggctggtgcaacccgccgcgcgagcactttgacctctccatgccggccttt 19206232
Query: 504 ctccagatcgcacaggagaaggccggcatcgtgcccat 541
|| |||||||| ||||||||||||||||||||||||||
Sbjct: 19206233 ctgcagatcgcgcaggagaaggccggcatcgtgcccat 19206270
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 178 bits (90), Expect = 4e-042
Identities = 171/198 (86%)
Strand = Plus / Plus
Query: 663 tcggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtg 722
||||||||||||| |||| | || |||||||| | ||||||||||||||||||| | |
Sbjct: 26808473 tcggtgaaggggaacaagagggtgaagtggactccgctgaagcgcaactgggggcaggag 26808532
Query: 723 tggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgac 782
|||||||| ||||| ||||||| | ||||||||||||||| |||||||||| |||||
Sbjct: 26808533 tggcagacgtcggaggtcctcaccggagagtcgctgacgttcagggtgatgaccggcgac 26808592
Query: 783 caccgcaaggccacctcatggcacgttctccccgctgactggaagttcggcgtcacgtac 842
||||||||||||||||| |||||||| |||||| | |||||| ||||||||||||| |||
Sbjct: 26808593 caccgcaaggccacctcctggcacgtcctcccccccgactggcagttcggcgtcacctac 26808652
Query: 843 caggcgtccaagaacttc 860
||||| |||||||||||
Sbjct: 26808653 caggctaccaagaacttc 26808670
Score = 129 bits (65), Expect = 3e-027
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 153 aaccacggcaagttcacggctgggccgnggaaacccgcccacgcgaccttctacggcggg 212
|||||||||||||||||||| ||||| |||| | || |||||||| ||||||||||||
Sbjct: 26807888 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 26807947
Query: 213 cgggatgggtccggcaccacggcgggcgcgtgcgggtacaaggacacgcgcgcgcagggg 272
|| || ||||||||||| || |||||||||||||||||||||||| | | | ||
Sbjct: 26807948 cgcgacgggtccggcacgctggacggcgcgtgcgggtacaaggacacgtccaaggaaggc 26808007
Query: 273 tatggcgtgcagacggtggccgtgagcacggtgctgttcggtgacggcgcggcctgcggc 332
|| ||||||||||||||||| ||||||||| ||||||||| | | |||| | |||||||
Sbjct: 26808008 tacggcgtgcagacggtggcggtgagcacgccgctgttcggcgcctgcgccggctgcggc 26808067
Query: 333 gggtgctacgaggtgcgctgcgtggacagccc 364
| ||||||||||| ||||||||||||||
Sbjct: 26808068 gcctgctacgaggtcaagtgcgtggacagccc 26808099
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 444 gacagcggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttc 503
|||| |||||| ||||||||||||||||| |||||||| |||||| |||||| || ||
Sbjct: 26808179 gacaacggcggctggtgcaacccgccgcgcgagcactttgacctctccatgccggccttt 26808238
Query: 504 ctccagatcgcacaggagaaggccggcatcgtgcccat 541
|| |||||||| ||||||||||||||||||||||||||
Sbjct: 26808239 ctgcagatcgcgcaggagaaggccggcatcgtgcccat 26808276
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 178 bits (90), Expect = 4e-042
Identities = 171/198 (86%)
Strand = Plus / Plus
Query: 663 tcggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtg 722
||||||||||||| |||| | || |||||||| | ||||||||||||||||||| | |
Sbjct: 28131066 tcggtgaaggggaacaagagggtgaagtggactccgctgaagcgcaactgggggcaggag 28131125
Query: 723 tggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgac 782
|||||||| ||||| ||||||| | ||||||||||||||| |||||||||| |||||
Sbjct: 28131126 tggcagacgtcggaggtcctcaccggagagtcgctgacgttcagggtgatgaccggcgac 28131185
Query: 783 caccgcaaggccacctcatggcacgttctccccgctgactggaagttcggcgtcacgtac 842
||||||||||||||||| |||||||| |||||| | |||||| ||||||||||||| |||
Sbjct: 28131186 caccgcaaggccacctcctggcacgtcctcccccccgactggcagttcggcgtcacctac 28131245
Query: 843 caggcgtccaagaacttc 860
||||| |||||||||||
Sbjct: 28131246 caggctaccaagaacttc 28131263
Score = 137 bits (69), Expect = 1e-029
Identities = 176/212 (83%)
Strand = Plus / Plus
Query: 153 aaccacggcaagttcacggctgggccgnggaaacccgcccacgcgaccttctacggcggg 212
|||||||||||||||||||| ||||| |||| | || |||||||| ||||||||||||
Sbjct: 28130481 aaccacggcaagttcacggcggggccatggaagcaggcgcacgcgacgttctacggcggg 28130540
Query: 213 cgggatgggtccggcaccacggcgggcgcgtgcgggtacaaggacacgcgcgcgcagggg 272
|| || ||||||||||| || |||||||||||||||||||||||| | | | ||
Sbjct: 28130541 cgcgacgggtccggcacgctggacggcgcgtgcgggtacaaggacacgtccaaggaaggc 28130600
Query: 273 tatggcgtgcagacggtggccgtgagcacggtgctgttcggtgacggcgcggcctgcggc 332
|| ||||||||||||||||| ||||||||| ||||||||| | |||||| | |||||||
Sbjct: 28130601 tacggcgtgcagacggtggcggtgagcacgccgctgttcggcgccggcgccggctgcggc 28130660
Query: 333 gggtgctacgaggtgcgctgcgtggacagccc 364
| ||||||||||| ||||||||||||||
Sbjct: 28130661 gcctgctacgaggtcaagtgcgtggacagccc 28130692
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 444 gacagcggcgggtggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttc 503
|||| |||||| ||||||||||||||||| |||||||| |||||| |||||| || ||
Sbjct: 28130772 gacaacggcggctggtgcaacccgccgcgcgagcactttgacctctccatgccggccttt 28130831
Query: 504 ctccagatcgcacaggagaaggccggcatcgtgcccat 541
|| |||||||| ||||||||||||||||||||||||||
Sbjct: 28130832 ctgcagatcgcgcaggagaaggccggcatcgtgcccat 28130869
>dbj|AK071328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087C24, full
insert sequence
Length = 1175
Score = 117 bits (59), Expect = 1e-023
Identities = 263/331 (79%)
Strand = Plus / Plus
Query: 474 gagcacttcgacctcagcatgcccgcgttcctccagatcgcacaggagaaggccggcatc 533
|||||||||||||||| |||||| ||||||||| ||||| |||||||| |||| ||
Sbjct: 501 gagcacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtc 560
Query: 534 gtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccggtacaccatc 593
|||||| |||||||||| | |||||||||| || ||||||||| || |||||| ||
Sbjct: 561 gtgcccgtctcctaccgaaaggtggcgtgcgtgaggcagggcgggataaagtacacgata 620
Query: 594 accgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgccggcgacatc 653
|| |||||| || | ||||||||||| | | | ||||| |||||||| || ||| |
Sbjct: 621 acggggaacccgtcgtacaacatggtgatggtgaagaacgtgggcggcgcgggggacgtg 680
Query: 654 gcggcggtgtcggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgg 713
| | | || |||||||||||| |||||| || ||||||||| | || |||||| ||||
Sbjct: 681 gtgaagctgacggtgaaggggaccaagcgggtgaagtggacgccgctgcagcgcagctgg 740
Query: 714 gggcaagtgtggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatg 773
|| || | ||| |||| | || |||||||| |||||||||| || |||||||| |||
Sbjct: 741 ggccagctctggaagacggaggccaacctcaccggcgagtcgctcaccttccgggtcatg 800
Query: 774 actagcgaccaccgcaaggccacctcatggc 804
|| |||||||||||||||||||||| ||||
Sbjct: 801 accggcgaccaccgcaaggccacctcctggc 831
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 192 cacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcg---cgtgcggg 248
|||||||| |||||||||||||| || | ||| ||||| |||| ||||| ||||||||
Sbjct: 273 cacgcgacgttctacggcgggcgcgacgcgtcgggcacgacggagggcggcgcgtgcggg 332
Query: 249 tacaaggac 257
|||||||||
Sbjct: 333 tacaaggac 341
>gb|AY100692.1| Oryza sativa (japonica cultivar-group) alpha expansin 26 (EXPA26)
mRNA, complete cds
Length = 1011
Score = 117 bits (59), Expect = 1e-023
Identities = 263/331 (79%)
Strand = Plus / Plus
Query: 474 gagcacttcgacctcagcatgcccgcgttcctccagatcgcacaggagaaggccggcatc 533
|||||||||||||||| |||||| ||||||||| ||||| |||||||| |||| ||
Sbjct: 482 gagcacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtc 541
Query: 534 gtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccggtacaccatc 593
|||||| |||||||||| | |||||||||| || ||||||||| || |||||| ||
Sbjct: 542 gtgcccgtctcctaccgaaaggtggcgtgcgtgaggcagggcgggataaagtacacgata 601
Query: 594 accgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgccggcgacatc 653
|| |||||| || | ||||||||||| | | | ||||| |||||||| || ||| |
Sbjct: 602 acggggaacccgtcgtacaacatggtgatggtgaagaacgtgggcggcgcgggggacgtg 661
Query: 654 gcggcggtgtcggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgg 713
| | | || |||||||||||| |||||| || ||||||||| | || |||||| ||||
Sbjct: 662 gtgaagctgacggtgaaggggaccaagcgggtgaagtggacgccgctgcagcgcagctgg 721
Query: 714 gggcaagtgtggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatg 773
|| || | ||| |||| | || |||||||| |||||||||| || |||||||| |||
Sbjct: 722 ggccagctctggaagacggaggccaacctcaccggcgagtcgctcaccttccgggtcatg 781
Query: 774 actagcgaccaccgcaaggccacctcatggc 804
|| |||||||||||||||||||||| ||||
Sbjct: 782 accggcgaccaccgcaaggccacctcctggc 812
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 192 cacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcg---cgtgcggg 248
|||||||| |||||||||||||| || | ||| ||||| |||| ||||| ||||||||
Sbjct: 254 cacgcgacgttctacggcgggcgcgacgcgtcgggcacgacggagggcggcgcgtgcggg 313
Query: 249 tacaaggac 257
|||||||||
Sbjct: 314 tacaaggac 322
>gb|AACV01000668.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000668, whole
genome shotgun sequence
Length = 31747
Score = 111 bits (56), Expect = 8e-022
Identities = 104/120 (86%)
Strand = Plus / Minus
Query: 555 gtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtacttcaac 614
||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct: 5599 gtggcgtgcgcgaagcagggcggcatccggttcaccatcaccggccactcctacttcaac 5540
Query: 615 atggtgacgatcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtgaagggg 674
||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct: 5539 ctggtgctcgtcaccaacgtcggcggcgccggcgacgtgacggcggtgtcggtgaagggg 5480
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| ||||||||||
Sbjct: 5705 cggcgggtggtgcaacccgccgcggccgcacttcgac 5669
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 111 bits (56), Expect = 8e-022
Identities = 104/120 (86%)
Strand = Plus / Plus
Query: 555 gtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtacttcaac 614
||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct: 9523380 gtggcgtgcgcgaagcagggcggcatccggttcaccatcaccggccactcctacttcaac 9523439
Query: 615 atggtgacgatcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtgaagggg 674
||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct: 9523440 ctggtgctcgtcaccaacgtcggcggcgccggcgacgtgacggcggtgtcggtgaagggg 9523499
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| ||||||||||
Sbjct: 9523274 cggcgggtggtgcaacccgccgcggccgcacttcgac 9523310
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcgg 473
|||||||||||||||||||||||||
Sbjct: 8199121 cggcgggtggtgcaacccgccgcgg 8199097
Score = 48.1 bits (24), Expect = 0.010
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||||||||||| ||||||||||| ||||| |||||||||| |||| ||||
Sbjct: 35219847 tgagcacggtgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtgcg 35219906
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcg 472
||||||||||||||||||||||||
Sbjct: 8193407 cggcgggtggtgcaacccgccgcg 8193384
>ref|XM_493787.1| Oryza sativa (japonica cultivar-group), Ozsa8506 predicted mRNA
Length = 747
Score = 111 bits (56), Expect = 8e-022
Identities = 104/120 (86%)
Strand = Plus / Plus
Query: 555 gtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtacttcaac 614
||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct: 445 gtggcgtgcgcgaagcagggcggcatccggttcaccatcaccggccactcctacttcaac 504
Query: 615 atggtgacgatcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtgaagggg 674
||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct: 505 ctggtgctcgtcaccaacgtcggcggcgccggcgacgtgacggcggtgtcggtgaagggg 564
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| ||||||||||
Sbjct: 339 cggcgggtggtgcaacccgccgcggccgcacttcgac 375
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 111 bits (56), Expect = 8e-022
Identities = 104/120 (86%)
Strand = Plus / Plus
Query: 555 gtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtacttcaac 614
||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct: 9523220 gtggcgtgcgcgaagcagggcggcatccggttcaccatcaccggccactcctacttcaac 9523279
Query: 615 atggtgacgatcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtgaagggg 674
||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct: 9523280 ctggtgctcgtcaccaacgtcggcggcgccggcgacgtgacggcggtgtcggtgaagggg 9523339
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| ||||||||||
Sbjct: 9523114 cggcgggtggtgcaacccgccgcggccgcacttcgac 9523150
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcgg 473
|||||||||||||||||||||||||
Sbjct: 8198961 cggcgggtggtgcaacccgccgcgg 8198937
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcg 472
||||||||||||||||||||||||
Sbjct: 8193247 cggcgggtggtgcaacccgccgcg 8193224
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0424A08
Length = 151294
Score = 111 bits (56), Expect = 8e-022
Identities = 104/120 (86%)
Strand = Plus / Plus
Query: 555 gtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtacttcaac 614
||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct: 59027 gtggcgtgcgcgaagcagggcggcatccggttcaccatcaccggccactcctacttcaac 59086
Query: 615 atggtgacgatcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtgaagggg 674
||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct: 59087 ctggtgctcgtcaccaacgtcggcggcgccggcgacgtgacggcggtgtcggtgaagggg 59146
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| ||||||||||
Sbjct: 58921 cggcgggtggtgcaacccgccgcggccgcacttcgac 58957
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 111 bits (56), Expect = 8e-022
Identities = 104/120 (86%)
Strand = Plus / Plus
Query: 555 gtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtacttcaac 614
||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct: 9573094 gtggcgtgcgcgaagcagggcggcatccggttcaccatcaccggccactcctacttcaac 9573153
Query: 615 atggtgacgatcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtgaagggg 674
||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct: 9573154 ctggtgctcgtcaccaacgtcggcggcgccggcgacgtgacggcggtgtcggtgaagggg 9573213
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| ||||||||||
Sbjct: 9572988 cggcgggtggtgcaacccgccgcggccgcacttcgac 9573024
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcgg 473
|||||||||||||||||||||||||
Sbjct: 8249664 cggcgggtggtgcaacccgccgcgg 8249640
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcg 472
||||||||||||||||||||||||
Sbjct: 8243948 cggcgggtggtgcaacccgccgcg 8243925
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 111 bits (56), Expect = 8e-022
Identities = 104/120 (86%)
Strand = Plus / Plus
Query: 555 gtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtacttcaac 614
||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct: 9573094 gtggcgtgcgcgaagcagggcggcatccggttcaccatcaccggccactcctacttcaac 9573153
Query: 615 atggtgacgatcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtgaagggg 674
||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct: 9573154 ctggtgctcgtcaccaacgtcggcggcgccggcgacgtgacggcggtgtcggtgaagggg 9573213
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| ||||||||||
Sbjct: 9572988 cggcgggtggtgcaacccgccgcggccgcacttcgac 9573024
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcgg 473
|||||||||||||||||||||||||
Sbjct: 8249664 cggcgggtggtgcaacccgccgcgg 8249640
Score = 48.1 bits (24), Expect = 0.010
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||||||||||| ||||||||||| ||||| |||||||||| |||| ||||
Sbjct: 34636997 tgagcacggtgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtgcg 34637056
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcg 472
||||||||||||||||||||||||
Sbjct: 8243948 cggcgggtggtgcaacccgccgcg 8243925
>gb|DQ062981.1| Oryza sativa (japonica cultivar-group) alpha-expansin 11 (EXPA11)
mRNA, partial cds
Length = 798
Score = 111 bits (56), Expect = 8e-022
Identities = 104/120 (86%)
Strand = Plus / Plus
Query: 555 gtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtacttcaac 614
||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct: 436 gtggcgtgcgcgaagcagggcggcatccggttcaccatcaccggccactcctacttcaac 495
Query: 615 atggtgacgatcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtgaagggg 674
||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct: 496 ctggtgctcgtcaccaacgtcggcggcgccggcgacgtgacggcggtgtcggtgaagggg 555
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| ||||||||||
Sbjct: 330 cggcgggtggtgcaacccgccgcggccgcacttcgac 366
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 111 bits (56), Expect = 8e-022
Identities = 104/120 (86%)
Strand = Plus / Plus
Query: 555 gtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtacttcaac 614
||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct: 9525598 gtggcgtgcgcgaagcagggcggcatccggttcaccatcaccggccactcctacttcaac 9525657
Query: 615 atggtgacgatcaccaacgtaggcggcgccggcgacatcgcggcggtgtcggtgaagggg 674
||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct: 9525658 ctggtgctcgtcaccaacgtcggcggcgccggcgacgtgacggcggtgtcggtgaagggg 9525717
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| ||||||||||
Sbjct: 9525492 cggcgggtggtgcaacccgccgcggccgcacttcgac 9525528
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcgg 473
|||||||||||||||||||||||||
Sbjct: 8201339 cggcgggtggtgcaacccgccgcgg 8201315
Score = 48.1 bits (24), Expect = 0.010
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||||||||||| ||||||||||| ||||| |||||||||| |||| ||||
Sbjct: 35139177 tgagcacggtgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtgcg 35139236
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcg 472
||||||||||||||||||||||||
Sbjct: 8195625 cggcgggtggtgcaacccgccgcg 8195602
>gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07L24 5', mRNA sequence
Length = 838
Score = 89.7 bits (45), Expect = 3e-015
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 522 aaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatc 581
||||||||||| || ||| ||||||||||| ||||||| ||| |||| ||||||| |||
Sbjct: 583 aaggccggcattgtccccgtctcctaccgccgggtggcttgccagaagaagggcgggatc 642
Query: 582 cggtacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggc 641
|||| |||||||| |||| || ||||||||| ||||| | | |||||||| ||||||
Sbjct: 643 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgggcggc 702
Query: 642 gccggcgac 650
|||||||||
Sbjct: 703 gccggcgac 711
>dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044E11, full
insert sequence
Length = 1416
Score = 89.7 bits (45), Expect = 3e-015
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 522 aaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatc 581
||||||||||| || ||| ||||||||||| ||||||| ||| |||| ||||||| |||
Sbjct: 614 aaggccggcattgtccccgtctcctaccgccgggtggcttgccagaagaagggcgggatc 673
Query: 582 cggtacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggc 641
|||| |||||||| |||| || ||||||||| ||||| | | |||||||| ||||||
Sbjct: 674 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgggcggc 733
Query: 642 gccggcgac 650
|||||||||
Sbjct: 734 gccggcgac 742
>dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-F08, full
insert sequence
Length = 1290
Score = 89.7 bits (45), Expect = 3e-015
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 522 aaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatc 581
||||||||||| || ||| ||||||||||| ||||||| ||| |||| ||||||| |||
Sbjct: 609 aaggccggcattgtccccgtctcctaccgccgggtggcttgccagaagaagggcgggatc 668
Query: 582 cggtacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggc 641
|||| |||||||| |||| || ||||||||| ||||| | | |||||||| ||||||
Sbjct: 669 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgggcggc 728
Query: 642 gccggcgac 650
|||||||||
Sbjct: 729 gccggcgac 737
>ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1289
Score = 89.7 bits (45), Expect = 3e-015
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 522 aaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatc 581
||||||||||| || ||| ||||||||||| ||||||| ||| |||| ||||||| |||
Sbjct: 609 aaggccggcattgtccccgtctcctaccgccgggtggcttgccagaagaagggcgggatc 668
Query: 582 cggtacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggc 641
|||| |||||||| |||| || ||||||||| ||||| | | |||||||| ||||||
Sbjct: 669 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgggcggc 728
Query: 642 gccggcgac 650
|||||||||
Sbjct: 729 gccggcgac 737
>ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1734_E02.30
mRNA
Length = 1417
Score = 89.7 bits (45), Expect = 3e-015
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 522 aaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatc 581
||||||||||| || ||| ||||||||||| ||||||| ||| |||| ||||||| |||
Sbjct: 615 aaggccggcattgtccccgtctcctaccgccgggtggcttgccagaagaagggcgggatc 674
Query: 582 cggtacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggc 641
|||| |||||||| |||| || ||||||||| ||||| | | |||||||| ||||||
Sbjct: 675 cggttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgggcggc 734
Query: 642 gccggcgac 650
|||||||||
Sbjct: 735 gccggcgac 743
>gb|AQ863234.1|AQ863234 nbeb0020H17f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0020H17f, DNA sequence
Length = 477
Score = 81.8 bits (41), Expect = 7e-013
Identities = 116/141 (82%)
Strand = Plus / Minus
Query: 664 cggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtgt 723
|||||||||||| |||||| || ||||||||| | || |||||| |||||| || | |
Sbjct: 393 cggtgaaggggaccaagcgggtgaagtggacgccgctgcagcgcagctggggccagctct 334
Query: 724 ggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgacc 783
|| |||| | || |||||||| |||||||||| || |||||||| ||||| ||||||
Sbjct: 333 ggaagacggaggccaacctcaccggcgagtcgctcaccttccgggtcatgaccggcgacc 274
Query: 784 accgcaaggccacctcatggc 804
|||||||||||||||| ||||
Sbjct: 273 accgcaaggccacctcctggc 253
>gb|AU172682.1|AU172682 AU172682 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4381, mRNA sequence
Length = 441
Score = 81.8 bits (41), Expect = 7e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 664 cggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtgt 723
|||||||||||| |||||| || ||||||||| | || |||||| |||||| || | |
Sbjct: 101 cggtgaaggggaccaagcgggtgaagtggacgccgctgcagcgcagctggggccagctct 160
Query: 724 ggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgacc 783
|| |||| | || |||||||| |||||||||| || |||||||| ||||| ||||||
Sbjct: 161 ggaagacggaggccaacctcaccggcgagtcgctcaccttccgggtcatgaccggcgacc 220
Query: 784 accgcaaggccacctcatggc 804
|||||||||||||||| ||||
Sbjct: 221 accgcaaggccacctcctggc 241
>emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC OJ1123_B09 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 155585
Score = 81.8 bits (41), Expect = 7e-013
Identities = 116/141 (82%)
Strand = Plus / Minus
Query: 664 cggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtgt 723
|||||||||||| |||||| || ||||||||| | || |||||| |||||| || | |
Sbjct: 127879 cggtgaaggggaccaagcgggtgaagtggacgccgctgcagcgcagctggggccagctct 127820
Query: 724 ggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgacc 783
|| |||| | || |||||||| |||||||||| || |||||||| ||||| ||||||
Sbjct: 127819 ggaagacggaggccaacctcaccggcgagtcgctcaccttccgggtcatgaccggcgacc 127760
Query: 784 accgcaaggccacctcatggc 804
|||||||||||||||| ||||
Sbjct: 127759 accgcaaggccacctcctggc 127739
Score = 65.9 bits (33), Expect = 4e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 474 gagcacttcgacctcagcatgcccgcgttcctccagatcgcacaggagaaggccggcatc 533
|||||||||||||||| |||||| ||||||||| ||||| |||||||| |||| ||
Sbjct: 129329 gagcacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtc 129270
Query: 534 gtgcccatctcctaccg 550
|||||| ||||||||||
Sbjct: 129269 gtgcccgtctcctaccg 129253
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Minus
Query: 192 cacgcgaccttctacggcgggcgggatgggtccggcaccacggcg---ggcgcgtgcggg 248
|||||||| |||||||||||||| || | ||| ||||| |||| | ||||||||||||
Sbjct: 129557 cacgcgacgttctacggcgggcgcgacgcgtcgggcacgacggagggcggcgcgtgcggg 129498
Query: 249 tacaaggac 257
|||||||||
Sbjct: 129497 tacaaggac 129489
>ref|NT_107150.1| Oryza sativa (japonica cultivar-group)
Length = 2060995
Score = 81.8 bits (41), Expect = 7e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 664 cggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtgt 723
|||||||||||| |||||| || ||||||||| | || |||||| |||||| || | |
Sbjct: 637286 cggtgaaggggaccaagcgggtgaagtggacgccgctgcagcgcagctggggccagctct 637345
Query: 724 ggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgacc 783
|| |||| | || |||||||| |||||||||| || |||||||| ||||| ||||||
Sbjct: 637346 ggaagacggaggccaacctcaccggcgagtcgctcaccttccgggtcatgaccggcgacc 637405
Query: 784 accgcaaggccacctcatggc 804
|||||||||||||||| ||||
Sbjct: 637406 accgcaaggccacctcctggc 637426
Score = 65.9 bits (33), Expect = 4e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 474 gagcacttcgacctcagcatgcccgcgttcctccagatcgcacaggagaaggccggcatc 533
|||||||||||||||| |||||| ||||||||| ||||| |||||||| |||| ||
Sbjct: 635836 gagcacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtc 635895
Query: 534 gtgcccatctcctaccg 550
|||||| ||||||||||
Sbjct: 635896 gtgcccgtctcctaccg 635912
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 192 cacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcg---cgtgcggg 248
|||||||| |||||||||||||| || | ||| ||||| |||| ||||| ||||||||
Sbjct: 635608 cacgcgacgttctacggcgggcgcgacgcgtcgggcacgacggagggcggcgcgtgcggg 635667
Query: 249 tacaaggac 257
|||||||||
Sbjct: 635668 tacaaggac 635676
>gb|AACV01025197.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025197, whole
genome shotgun sequence
Length = 12082
Score = 81.8 bits (41), Expect = 7e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 664 cggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtgt 723
|||||||||||| |||||| || ||||||||| | || |||||| |||||| || | |
Sbjct: 979 cggtgaaggggaccaagcgggtgaagtggacgccgctgcagcgcagctggggccagctct 1038
Query: 724 ggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgacc 783
|| |||| | || |||||||| |||||||||| || |||||||| ||||| ||||||
Sbjct: 1039 ggaagacggaggccaacctcaccggcgagtcgctcaccttccgggtcatgaccggcgacc 1098
Query: 784 accgcaaggccacctcatggc 804
|||||||||||||||| ||||
Sbjct: 1099 accgcaaggccacctcctggc 1119
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118 genomic
scaffold, whole genome shotgun sequence
Length = 3660441
Score = 81.8 bits (41), Expect = 7e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 664 cggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtgt 723
|||||||||||| |||||| || ||||||||| | || |||||| |||||| || | |
Sbjct: 2800442 cggtgaaggggaccaagcgggtgaagtggacgccgctgcagcgcagctggggccagctct 2800501
Query: 724 ggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgacc 783
|| |||| | || |||||||| |||||||||| || |||||||| ||||| ||||||
Sbjct: 2800502 ggaagacggaggccaacctcaccggcgagtcgctcaccttccgggtcatgaccggcgacc 2800561
Query: 784 accgcaaggccacctcatggc 804
|||||||||||||||| ||||
Sbjct: 2800562 accgcaaggccacctcctggc 2800582
Score = 65.9 bits (33), Expect = 4e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 474 gagcacttcgacctcagcatgcccgcgttcctccagatcgcacaggagaaggccggcatc 533
|||||||||||||||| |||||| ||||||||| ||||| |||||||| |||| ||
Sbjct: 2798125 gagcacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtc 2798184
Query: 534 gtgcccatctcctaccg 550
|||||| ||||||||||
Sbjct: 2798185 gtgcccgtctcctaccg 2798201
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 192 cacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcg---cgtgcggg 248
|||||||| |||||||||||||| || | ||| ||||| |||| ||||| ||||||||
Sbjct: 2797897 cacgcgacgttctacggcgggcgcgacgcgtcgggcacgacggagggcggcgcgtgcggg 2797956
Query: 249 tacaaggac 257
|||||||||
Sbjct: 2797957 tacaaggac 2797965
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 81.8 bits (41), Expect = 7e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 664 cggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtgt 723
|||||||||||| |||||| || ||||||||| | || |||||| |||||| || | |
Sbjct: 18323547 cggtgaaggggaccaagcgggtgaagtggacgccgctgcagcgcagctggggccagctct 18323606
Query: 724 ggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgacc 783
|| |||| | || |||||||| |||||||||| || |||||||| ||||| ||||||
Sbjct: 18323607 ggaagacggaggccaacctcaccggcgagtcgctcaccttccgggtcatgaccggcgacc 18323666
Query: 784 accgcaaggccacctcatggc 804
|||||||||||||||| ||||
Sbjct: 18323667 accgcaaggccacctcctggc 18323687
Score = 65.9 bits (33), Expect = 4e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 474 gagcacttcgacctcagcatgcccgcgttcctccagatcgcacaggagaaggccggcatc 533
|||||||||||||||| |||||| ||||||||| ||||| |||||||| |||| ||
Sbjct: 18321230 gagcacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtc 18321289
Query: 534 gtgcccatctcctaccg 550
|||||| ||||||||||
Sbjct: 18321290 gtgcccgtctcctaccg 18321306
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 192 cacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcg---cgtgcggg 248
|||||||| |||||||||||||| || | ||| ||||| |||| ||||| ||||||||
Sbjct: 18321002 cacgcgacgttctacggcgggcgcgacgcgtcgggcacgacggagggcggcgcgtgcggg 18321061
Query: 249 tacaaggac 257
|||||||||
Sbjct: 18321062 tacaaggac 18321070
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 81.8 bits (41), Expect = 7e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 664 cggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtgt 723
|||||||||||| |||||| || ||||||||| | || |||||| |||||| || | |
Sbjct: 22125131 cggtgaaggggaccaagcgggtgaagtggacgccgctgcagcgcagctggggccagctct 22125190
Query: 724 ggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgacc 783
|| |||| | || |||||||| |||||||||| || |||||||| ||||| ||||||
Sbjct: 22125191 ggaagacggaggccaacctcaccggcgagtcgctcaccttccgggtcatgaccggcgacc 22125250
Query: 784 accgcaaggccacctcatggc 804
|||||||||||||||| ||||
Sbjct: 22125251 accgcaaggccacctcctggc 22125271
Score = 65.9 bits (33), Expect = 4e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 474 gagcacttcgacctcagcatgcccgcgttcctccagatcgcacaggagaaggccggcatc 533
|||||||||||||||| |||||| ||||||||| ||||| |||||||| |||| ||
Sbjct: 22123681 gagcacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtc 22123740
Query: 534 gtgcccatctcctaccg 550
|||||| ||||||||||
Sbjct: 22123741 gtgcccgtctcctaccg 22123757
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 192 cacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcg---cgtgcggg 248
|||||||| |||||||||||||| || | ||| ||||| |||| ||||| ||||||||
Sbjct: 22123453 cacgcgacgttctacggcgggcgcgacgcgtcgggcacgacggagggcggcgcgtgcggg 22123512
Query: 249 tacaaggac 257
|||||||||
Sbjct: 22123513 tacaaggac 22123521
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 81.8 bits (41), Expect = 7e-013
Identities = 116/141 (82%)
Strand = Plus / Plus
Query: 664 cggtgaaggggagcaagcgcgttaagtggacggagatgaagcgcaactgggggcaagtgt 723
|||||||||||| |||||| || ||||||||| | || |||||| |||||| || | |
Sbjct: 22053476 cggtgaaggggaccaagcgggtgaagtggacgccgctgcagcgcagctggggccagctct 22053535
Query: 724 ggcagaccggggaggacctcacctgcgagtcgctgacgttccgggtgatgactagcgacc 783
|| |||| | || |||||||| |||||||||| || |||||||| ||||| ||||||
Sbjct: 22053536 ggaagacggaggccaacctcaccggcgagtcgctcaccttccgggtcatgaccggcgacc 22053595
Query: 784 accgcaaggccacctcatggc 804
|||||||||||||||| ||||
Sbjct: 22053596 accgcaaggccacctcctggc 22053616
Score = 65.9 bits (33), Expect = 4e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 474 gagcacttcgacctcagcatgcccgcgttcctccagatcgcacaggagaaggccggcatc 533
|||||||||||||||| |||||| ||||||||| ||||| |||||||| |||| ||
Sbjct: 22052026 gagcacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtc 22052085
Query: 534 gtgcccatctcctaccg 550
|||||| ||||||||||
Sbjct: 22052086 gtgcccgtctcctaccg 22052102
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 192 cacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcg---cgtgcggg 248
|||||||| |||||||||||||| || | ||| ||||| |||| ||||| ||||||||
Sbjct: 22051798 cacgcgacgttctacggcgggcgcgacgcgtcgggcacgacggagggcggcgcgtgcggg 22051857
Query: 249 tacaaggac 257
|||||||||
Sbjct: 22051858 tacaaggac 22051866
>ref|XM_470717.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 795
Score = 69.9 bits (35), Expect = 3e-009
Identities = 200/255 (78%)
Strand = Plus / Plus
Query: 396 gtggtgacggcgaccgacctgtgcccgcccaacgaccagcagtccgcggacagcggcggg 455
||||||||||| ||||||||||||||| ||||| || || ||| ||| |||||||
Sbjct: 322 gtggtgacggccaccgacctgtgcccggccaaccacgcgctccccggcgaccgcggcggc 381
Query: 456 tggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttcctccagatcgca 515
|||||||||||||||| | |||||||||||| | |||||| ||||||| |||||
Sbjct: 382 tggtgcaacccgccgctccaccacttcgacctctcccagcccgccttcctccgcatcgcc 441
Query: 516 caggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggc 575
| || |||||||||| ||| ||||||||||| ||||||||||| || | ||||
Sbjct: 442 cgcttccagtccggcatcgtccccgtctcctaccgccgggtggcgtgccggaggaaggga 501
Query: 576 ggcatccggtacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgta 635
|| || ||| |||||||| |||| || ||||||||| ||||| | | | ||||||
Sbjct: 502 gggatgaggttcaccatcaacgggcactcctacttcaacctggtgctggtgagcaacgtg 561
Query: 636 ggcggcgccggcgac 650
|||||||||||||||
Sbjct: 562 ggcggcgccggcgac 576
>gb|DQ061062.1| Oryza sativa (japonica cultivar-group) alpha-expansin 21 (EXPA21)
mRNA, partial cds
Length = 727
Score = 69.9 bits (35), Expect = 3e-009
Identities = 200/255 (78%)
Strand = Plus / Plus
Query: 396 gtggtgacggcgaccgacctgtgcccgcccaacgaccagcagtccgcggacagcggcggg 455
||||||||||| ||||||||||||||| ||||| || || ||| ||| |||||||
Sbjct: 299 gtggtgacggccaccgacctgtgcccggccaaccacgcgctccccggcgaccgcggcggc 358
Query: 456 tggtgcaacccgccgcgggagcacttcgacctcagcatgcccgcgttcctccagatcgca 515
|||||||||||||||| | |||||||||||| | |||||| ||||||| |||||
Sbjct: 359 tggtgcaacccgccgctccaccacttcgacctctcccagcccgccttcctccgcatcgcc 418
Query: 516 caggagaaggccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggc 575
| || |||||||||| ||| ||||||||||| ||||||||||| || | ||||
Sbjct: 419 cgcttccagtccggcatcgtccccgtctcctaccgccgggtggcgtgccggaggaaggga 478
Query: 576 ggcatccggtacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgta 635
|| || ||| |||||||| |||| || ||||||||| ||||| | | | ||||||
Sbjct: 479 gggatgaggttcaccatcaacgggcactcctacttcaacctggtgctggtgagcaacgtg 538
Query: 636 ggcggcgccggcgac 650
|||||||||||||||
Sbjct: 539 ggcggcgccggcgac 553
>gb|AU222840.1|AU222840 AU222840 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S1013, mRNA sequence
Length = 467
Score = 65.9 bits (33), Expect = 4e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| |||||||||||
Sbjct: 396 cggcgggtggtgcaacccgccgcggcagcacttcgac 432
>gb|CV723142.1|CV723142 root--02-K01.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--02-K01, mRNA sequence
Length = 487
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 445 acagcggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||||||||||||||||||| |||||| |||||||||||
Sbjct: 399 acagcggcgggtggtgcaacccaccgcggcagcacttcgac 439
>emb|Y07782.1|OSEXPANSI Oryza sativa expansin (Os-EXP-1) mRNA, complete cds
Length = 1081
Score = 65.9 bits (33), Expect = 4e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| |||||||||||
Sbjct: 384 cggcgggtggtgcaacccgccgcggcagcacttcgac 420
>dbj|AK060313.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-C10, full
insert sequence
Length = 1101
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 445 acagcggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||||||||||||||||||| |||||| |||||||||||
Sbjct: 416 acagcggcgggtggtgcaacccaccgcggcagcacttcgac 456
>dbj|AK069548.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022N21, full
insert sequence
Length = 1137
Score = 65.9 bits (33), Expect = 4e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| |||||||||||
Sbjct: 415 cggcgggtggtgcaacccgccgcggcagcacttcgac 451
>gb|AC130731.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692E03,
complete sequence
Length = 74462
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 445 acagcggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||||||||||||||||||| |||||| |||||||||||
Sbjct: 67266 acagcggcgggtggtgcaacccaccgcggcagcacttcgac 67226
>gb|AC145273.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0055E23, complete sequence
Length = 156572
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 445 acagcggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||||||||||||||||||| |||||| |||||||||||
Sbjct: 19296 acagcggcgggtggtgcaacccaccgcggcagcacttcgac 19256
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||| || |||||||||||
Sbjct: 43948 cggcgggtggtgcaacccgcctcgcaagcacttcgac 43912
>gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005399, whole
genome shotgun sequence
Length = 41834
Score = 65.9 bits (33), Expect = 4e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 550 gcagggtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtact 609
|||||||||| ||| |||| ||||||| ||||||| |||||||| |||| || ||||
Sbjct: 21289 gcagggtggcttgccagaagaagggcgggatccggttcaccatcaacgggcactcctact 21348
Query: 610 tcaacatggtgacgatcaccaacgtaggcggcgccggcgac 650
||||| ||||| | | |||||||| |||||||||||||||
Sbjct: 21349 tcaacctggtgctggtgaccaacgtgggcggcgccggcgac 21389
>gb|AACV01008335.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008335, whole
genome shotgun sequence
Length = 24250
Score = 65.9 bits (33), Expect = 4e-008
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| |||||||||||
Sbjct: 1251 cggcgggtggtgcaacccgccgcggcagcacttcgac 1215
>gb|AACV01011538.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011538, whole
genome shotgun sequence
Length = 8603
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 445 acagcggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||||||||||||||||||| |||||| |||||||||||
Sbjct: 5902 acagcggcgggtggtgcaacccaccgcggcagcacttcgac 5942
>gb|AACV01025196.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025196,
whole genome shotgun sequence
Length = 6673
Score = 65.9 bits (33), Expect = 4e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 474 gagcacttcgacctcagcatgcccgcgttcctccagatcgcacaggagaaggccggcatc 533
|||||||||||||||| |||||| ||||||||| ||||| |||||||| |||| ||
Sbjct: 339 gagcacttcgacctcaccatgccggcgttcctctccatcgccgaggagaagctcggcgtc 280
Query: 534 gtgcccatctcctaccg 550
|||||| ||||||||||
Sbjct: 279 gtgcccgtctcctaccg 263
Score = 54.0 bits (27), Expect = 2e-004
Identities = 59/69 (85%), Gaps = 3/69 (4%)
Strand = Plus / Minus
Query: 192 cacgcgaccttctacggcgggcgggatgggtccggcaccacggcg---ggcgcgtgcggg 248
|||||||| |||||||||||||| || | ||| ||||| |||| | ||||||||||||
Sbjct: 567 cacgcgacgttctacggcgggcgcgacgcgtcgggcacgacggagggcggcgcgtgcggg 508
Query: 249 tacaaggac 257
|||||||||
Sbjct: 507 tacaaggac 499
>ref|XM_474982.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 786
Score = 65.9 bits (33), Expect = 4e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| |||||||||||
Sbjct: 372 cggcgggtggtgcaacccgccgcggcagcacttcgac 408
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 65.9 bits (33), Expect = 4e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 550 gcagggtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtact 609
|||||||||| ||| |||| ||||||| ||||||| |||||||| |||| || ||||
Sbjct: 6404890 gcagggtggcttgccagaagaagggcgggatccggttcaccatcaacgggcactcctact 6404949
Query: 610 tcaacatggtgacgatcaccaacgtaggcggcgccggcgac 650
||||| ||||| | | |||||||| |||||||||||||||
Sbjct: 6404950 tcaacctggtgctggtgaccaacgtgggcggcgccggcgac 6404990
>ref|NT_107205.1| Oryza sativa (japonica cultivar-group)
Length = 801429
Score = 65.9 bits (33), Expect = 4e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
||||||||||||||||||||||||| |||||||||||
Sbjct: 170869 cggcgggtggtgcaacccgccgcggcagcacttcgac 170905
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,703,039
Number of Sequences: 438736
Number of extensions: 1703039
Number of successful extensions: 22162
Number of sequences better than 0.5: 210
Number of HSP's better than 0.5 without gapping: 239
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18318
Number of HSP's gapped (non-prelim): 3807
length of query: 1086
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1065
effective length of database: 2,791,206,460
effective search space: 2972634879900
effective search space used: 2972634879900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)