BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071761.2.1
(638 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB000351.1|CB000351 S345U_D03 Rice cold stress germinati... 387 e-105
gb|CB653843.1|CB653843 OSJNEc05E03.r OSJNEc Oryza sativa (j... 387 e-105
gb|CB654031.1|CB654031 OSJNEc05J16.r OSJNEc Oryza sativa (j... 387 e-105
gb|CB655489.1|CB655489 OSJNEc08P15.r OSJNEc Oryza sativa (j... 387 e-105
dbj|AK070083.1| Oryza sativa (japonica cultivar-group) cDNA... 387 e-105
gb|CB676498.1|CB676498 OSJNEe12M15.r OSJNEe Oryza sativa (j... 379 e-102
gb|CB684594.1|CB684594 OSJNEf14E12.r OSJNEf Oryza sativa (j... 379 e-102
gb|AU096471.1|AU096471 AU096471 Rice green shoot Oryza sati... 339 1e-090
gb|D41049.1|D41049 RICS3310A Rice shoot Oryza sativa (japon... 212 2e-052
gb|AU174808.1|AU174808 AU174808 Rice cDNA from leaf Oryza s... 208 3e-051
gb|AU161713.1|AU161713 AU161713 Rice shoot Oryza sativa (ja... 204 4e-050
gb|D47966.1|D47966 RICS13787A Rice green shoot Oryza sativa... 200 7e-049
gb|AU161971.1|AU161971 AU161971 Rice shoot Oryza sativa (ja... 198 3e-048
gb|CV722521.1|CV722521 YTPSP--01-K02.b1 TPSP-overexpression... 192 2e-046
gb|D41813.1|D41813 RICS4636A Rice shoot Oryza sativa (japon... 186 1e-044
dbj|AP004115.1| Oryza sativa (japonica cultivar-group) chro... 178 2e-042
dbj|AP004838.3| Oryza sativa (japonica cultivar-group) geno... 178 2e-042
gb|AACV01003472.1| Oryza sativa (japonica cultivar-group) c... 178 2e-042
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 178 2e-042
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 178 2e-042
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 178 2e-042
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 178 2e-042
gb|D41112.1|D41112 RICS3391A Rice shoot Oryza sativa (japon... 159 2e-036
gb|AU184583.1|AU184583 AU184583 Rice root Oryza sativa (jap... 155 3e-035
gb|AU223467.1|AU223467 AU223467 Rice shoot Oryza sativa (ja... 155 3e-035
gb|AU166255.1|AU166255 AU166255 Rice green shoot Oryza sati... 143 1e-031
gb|AU161714.1|AU161714 AU161714 Rice shoot Oryza sativa (ja... 133 1e-028
gb|AU078376.1|AU078376 AU078376 Rice mature leaf Oryza sati... 129 2e-027
gb|CB684593.1|CB684593 OSJNEf14E12.f OSJNEf Oryza sativa (j... 127 8e-027
gb|AU097402.1|AU097402 AU097402 Rice shoot Oryza sativa (ja... 115 3e-023
dbj|AK105636.1| Oryza sativa (japonica cultivar-group) cDNA... 86 3e-014
ref|XM_467290.1| Oryza sativa (japonica cultivar-group), mRNA 86 3e-014
dbj|AK069932.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
gb|AACV01017731.1| Oryza sativa (japonica cultivar-group) c... 80 2e-012
ref|XM_480952.1| Oryza sativa (japonica cultivar-group), mRNA 80 2e-012
dbj|AP003859.2| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 80 2e-012
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
gb|CB654377.1|CB654377 OSJNEc06K19.r OSJNEc Oryza sativa (j... 78 7e-012
gb|CB656113.1|CB656113 OSJNEc10B07.r OSJNEc Oryza sativa (j... 78 7e-012
gb|CB660533.1|CB660533 OSJNEd02G15.f OSJNEd Oryza sativa (j... 78 7e-012
gb|CB660534.1|CB660534 OSJNEd02G15.r OSJNEd Oryza sativa (j... 78 7e-012
gb|CB664984.1|CB664984 OSJNEd11A15.r OSJNEd Oryza sativa (j... 78 7e-012
gb|CB667032.1|CB667032 OSJNEd14C22.r OSJNEd Oryza sativa (j... 78 7e-012
gb|CB669744.1|CB669744 OSJNEe02H12.r OSJNEe Oryza sativa (j... 78 7e-012
gb|CB673005.1|CB673005 OSJNEe07F05.r OSJNEe Oryza sativa (j... 78 7e-012
dbj|AK068985.1| Oryza sativa (japonica cultivar-group) cDNA... 78 7e-012
dbj|AK120964.1| Oryza sativa (japonica cultivar-group) cDNA... 78 7e-012
dbj|AP004558.3| Oryza sativa (japonica cultivar-group) geno... 78 7e-012
dbj|AP004665.4| Oryza sativa (japonica cultivar-group) geno... 78 7e-012
gb|AACV01018590.1| Oryza sativa (japonica cultivar-group) c... 78 7e-012
ref|XM_482683.1| Oryza sativa (japonica cultivar-group), mRNA 78 7e-012
emb|X52623.1|OS4CL Rice 4-CL gene for 4-coumarate-CoA ligas... 72 4e-010
gb|CB655451.1|CB655451 OSJNEc08O09.r OSJNEc Oryza sativa (j... 68 6e-009
gb|AU108425.1|AU108425 AU108425 Rice shoot Oryza sativa (ja... 66 2e-008
gb|AU093459.1|AU093459 AU093459 Rice panicle at flowering s... 64 1e-007
gb|AU197957.1|AU197957 AU197957 Rice green shoot Oryza sati... 54 9e-005
gb|AACV01009260.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|XM_471766.1| Oryza sativa (japonica cultivar-group), p... 52 4e-004
ref|NT_079856.2| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
emb|AL662942.4|OSJN00135 Oryza sativa genomic DNA, chromoso... 52 4e-004
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 50 0.001
dbj|AP004778.3| Oryza sativa (japonica cultivar-group) geno... 50 0.001
dbj|AP005868.3| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|CV152484.1|CV152484 LS361-S.SEQ Cold stressed rice cDNA ... 48 0.006
dbj|AK107421.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.023
gb|CB663059.1|CB663059 OSJNEd07J18.r OSJNEd Oryza sativa (j... 44 0.091
ref|XM_475719.1| Oryza sativa (japonica cultivar-group), p... 44 0.091
>gb|CB000351.1|CB000351 S345U_D03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 761
Score = 387 bits (195), Expect = e-105
Identities = 294/327 (89%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 109 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 168
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 169 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgtctcgat 228
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| || |
Sbjct: 229 gaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctcaga 288
Query: 181 agtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagat 240
| |||||||||||||||||||| ||||||| || || |||||||| |||||||||| |||
Sbjct: 289 aatcaccgaggatgagatcaagaaattcgttgcaaaagaggtggtgttctacaagaggat 348
Query: 241 ccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaa 300
| ||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct: 349 caacaaggtgttcttcaccgattccatccccaagaacccttccggcaagatcctcaggaa 408
Query: 301 ggacttgagagccaggctcgccgccgg 327
|||||||||||||||||||||||||||
Sbjct: 409 ggacttgagagccaggctcgccgccgg 435
>gb|CB653843.1|CB653843 OSJNEc05E03.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05E03 3', mRNA sequence
Length = 811
Score = 387 bits (195), Expect = e-105
Identities = 294/327 (89%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 698 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 639
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 638 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgtctcgat 579
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| || |
Sbjct: 578 gaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctcaga 519
Query: 181 agtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagat 240
| |||||||||||||||||||| ||||||| || || |||||||| |||||||||| |||
Sbjct: 518 aatcaccgaggatgagatcaagaaattcgttgcaaaagaggtggtgttctacaagaggat 459
Query: 241 ccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaa 300
| ||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct: 458 caacaaggtgttcttcaccgattccatccccaagaacccttccggcaagatcctcaggaa 399
Query: 301 ggacttgagagccaggctcgccgccgg 327
|||||||||||||||||||||||||||
Sbjct: 398 ggacttgagagccaggctcgccgccgg 372
>gb|CB654031.1|CB654031 OSJNEc05J16.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05J16 3', mRNA sequence
Length = 755
Score = 387 bits (195), Expect = e-105
Identities = 294/327 (89%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 645 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 586
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 585 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgtctcgat 526
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| || |
Sbjct: 525 gaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctcaga 466
Query: 181 agtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagat 240
| |||||||||||||||||||| ||||||| || || |||||||| |||||||||| |||
Sbjct: 465 aatcaccgaggatgagatcaagaaattcgttgcaaaagaggtggtgttctacaagaggat 406
Query: 241 ccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaa 300
| ||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct: 405 caacaaggtgttcttcaccgattccatccccaagaacccttccggcaagatcctcaggaa 346
Query: 301 ggacttgagagccaggctcgccgccgg 327
|||||||||||||||||||||||||||
Sbjct: 345 ggacttgagagccaggctcgccgccgg 319
>gb|CB655489.1|CB655489 OSJNEc08P15.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08P15 3', mRNA sequence
Length = 810
Score = 387 bits (195), Expect = e-105
Identities = 294/327 (89%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 700 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 641
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 640 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgtctcgat 581
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| || |
Sbjct: 580 gaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctcaga 521
Query: 181 agtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagat 240
| |||||||||||||||||||| ||||||| || || |||||||| |||||||||| |||
Sbjct: 520 aatcaccgaggatgagatcaagaaattcgttgcaaaagaggtggtgttctacaagaggat 461
Query: 241 ccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaa 300
| ||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct: 460 caacaaggtgttcttcaccgattccatccccaagaacccttccggcaagatcctcaggaa 401
Query: 301 ggacttgagagccaggctcgccgccgg 327
|||||||||||||||||||||||||||
Sbjct: 400 ggacttgagagccaggctcgccgccgg 374
>dbj|AK070083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045L07, full
insert sequence
Length = 2044
Score = 387 bits (195), Expect = e-105
Identities = 294/327 (89%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 1379 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 1438
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 1439 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgtctcgat 1498
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| || |
Sbjct: 1499 gaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctcaga 1558
Query: 181 agtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagat 240
| |||||||||||||||||||| ||||||| || || |||||||| |||||||||| |||
Sbjct: 1559 aatcaccgaggatgagatcaagaaattcgttgcaaaagaggtggtgttctacaagaggat 1618
Query: 241 ccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaa 300
| ||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct: 1619 caacaaggtgttcttcaccgattccatccccaagaacccttccggcaagatcctcaggaa 1678
Query: 301 ggacttgagagccaggctcgccgccgg 327
|||||||||||||||||||||||||||
Sbjct: 1679 ggacttgagagccaggctcgccgccgg 1705
>gb|CB676498.1|CB676498 OSJNEe12M15.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe12M15 3', mRNA sequence
Length = 734
Score = 379 bits (191), Expect = e-102
Identities = 293/327 (89%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 655 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 596
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 595 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgtctcgat 536
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| || |
Sbjct: 535 gaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctcaga 476
Query: 181 agtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagat 240
| |||||||||||||||| ||| ||||||| || || |||||||| |||||||||| |||
Sbjct: 475 aatcaccgaggatgagataaagaaattcgttgcaaaagaggtggtgttctacaagaggat 416
Query: 241 ccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaa 300
| ||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct: 415 caacaaggtgttcttcaccgattccatccccaagaacccttccggcaagatcctcaggaa 356
Query: 301 ggacttgagagccaggctcgccgccgg 327
|||||||||||||||||||||||||||
Sbjct: 355 ggacttgagagccaggctcgccgccgg 329
>gb|CB684594.1|CB684594 OSJNEf14E12.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14E12 3', mRNA sequence
Length = 749
Score = 379 bits (191), Expect = e-102
Identities = 293/327 (89%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 637 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 578
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 577 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgtctcgat 518
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| || |
Sbjct: 517 gaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctcaga 458
Query: 181 agtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagat 240
| |||||||||||||||||||| ||||||| || || |||||||| || ||||||| |||
Sbjct: 457 aatcaccgaggatgagatcaagaaattcgttgcaaaagaggtggtgttttacaagaggat 398
Query: 241 ccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaa 300
| ||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||
Sbjct: 397 caacaaggtgttcttcaccgattccatccccaagaacccttccggcaagatcctcaggaa 338
Query: 301 ggacttgagagccaggctcgccgccgg 327
|||||||||||||||||||||||||||
Sbjct: 337 ggacttgagagccaggctcgccgccgg 311
>gb|AU096471.1|AU096471 AU096471 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S13787, mRNA sequence
Length = 722
Score = 339 bits (171), Expect = 1e-090
Identities = 290/328 (88%), Gaps = 2/328 (0%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtac-aagggcttccaggtgccgccgg 59
||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 47 cttcatcgtggacag-ctcaaggagatcatcaagtaccaaggggttccaggtgccaccgg 105
Query: 60 cggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaa 119
| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |
Sbjct: 106 ccgagctggaggcgctgctcatcantcacccggagatcaaggacgccgccgtcgtctcga 165
Query: 120 tgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctc 179
|||| ||||| ||||| |||||| | || ||||||||||| || ||||| |||| ||
Sbjct: 166 tgaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaagnctcag 225
Query: 180 aagtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaaga 239
|| |||||||||||||||||||| ||||||| || || |||||||| |||||||||| ||
Sbjct: 226 aaatcaccgaggatgagatcaagaaattcgttgcaaaagaggtggtgttctacaagagga 285
Query: 240 tccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgagga 299
|| ||||||| ||||||||||| ||||||||||||||||| || ||||||||||| ||||
Sbjct: 286 tcaacaaggtgttcttcaccgattccatccccaagaacccttccggcaagatcctcagga 345
Query: 300 aggacttgagagccaggctcgccgccgg 327
||||||||||||||||| ||||||||||
Sbjct: 346 aggacttgagagccaggntcgccgccgg 373
>gb|D41049.1|D41049 RICS3310A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 457
Score = 212 bits (107), Expect = 2e-052
Identities = 218/252 (86%), Gaps = 3/252 (1%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 197 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggn 256
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
|||||||||||||| |||||||| |||||||||||||||||||||||||| || || ||
Sbjct: 257 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtngtctcgat 316
Query: 121 gaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctca 180
||| ||||| ||||| |||||| | || ||||| ||||| || ||||| ||||| || |
Sbjct: 317 gaaggatgatcttgccggtgaagtgccagtcgcnttcattgtccggacagaaggctcaga 376
Query: 181 agtcaccga-ggatgagatcaagcaattcg-tcgccaaggaggtggt-tttctacaagaa 237
| ||||||| ||||||||||||| |||||| | | || |||||||| |||||||||||
Sbjct: 377 aatcaccgagggatgagatcaagaaattcgtttgaaaaagaggtggtgtttctacaagag 436
Query: 238 gatccacaaggt 249
|||| |||||||
Sbjct: 437 gatcaacaaggt 448
>gb|AU174808.1|AU174808 AU174808 Rice cDNA from leaf Oryza sativa (japonica cultivar-group)
cDNA clone F10403, mRNA sequence
Length = 414
Score = 208 bits (105), Expect = 3e-051
Identities = 174/197 (88%)
Strand = Plus / Plus
Query: 131 cttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctcaagtcaccgag 190
||||| |||||| | || ||||||||||| || ||||| ||||| || || ||||||||
Sbjct: 1 cttgccggtgaagtgccagtcgccttcattgtccggacagaaggctcagaaatcaccgag 60
Query: 191 gatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagatccacaaggtc 250
|||||||||||| ||||||| || || |||||||| |||||||||| |||| |||||||
Sbjct: 61 gatgagatcaagaaattcgttgcaaaagaggtggtgttctacaagaggatcaacaaggtg 120
Query: 251 ttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaaggacttgaga 310
||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 121 ttcttcaccgattccatccccaagaacccttccggcaagatcctcaggaaggacttgaga 180
Query: 311 gccaggctcgccgccgg 327
|||||||||||||||||
Sbjct: 181 gccaggctcgccgccgg 197
>gb|AU161713.1|AU161713 AU161713 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5138, mRNA sequence
Length = 333
Score = 204 bits (103), Expect = 4e-050
Identities = 160/179 (89%)
Strand = Plus / Plus
Query: 149 gtcgccttcatcgtgcggaccgaaggttctcaagtcaccgaggatgagatcaagcaattc 208
||||||||||| || ||||| ||||| || || |||||||||||||||||||| |||||
Sbjct: 15 gtcgccttcattgtccggacagaaggctcagaaatcaccgaggatgagatcaagaaattc 74
Query: 209 gtcgccaaggaggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatc 268
|| || || |||||||| |||||||||| |||| ||||||| ||||||||||| ||||||
Sbjct: 75 gttgcaaaagaggtggtgttctacaagaggatcaacaaggtgttcttcaccgattccatc 134
Query: 269 cccaagaacccgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccgg 327
||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 135 cccaagaacccttccggcaagatcctcaggaaggacttgagagccaggctcgccgccgg 193
>gb|D47966.1|D47966 RICS13787A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 415
Score = 200 bits (101), Expect = 7e-049
Identities = 170/192 (88%), Gaps = 1/192 (0%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 177 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 236
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
|||||||||||||| |||||||| ||||||||||||||||||| ||||||||| || ||
Sbjct: 237 cgagctggaggcgctgctcatcactcacccggagatcaaggacgncgccgtcgtctcgat 296
Query: 121 gaacgatgaccttgctggtgaaat-cccggtcgccttcatcgtgcggaccgaaggttctc 179
||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||||||
Sbjct: 297 gaaggatgatcttgccggtgaagtggccagtcgccttcattgtccggacagaaggttcag 356
Query: 180 aagtcaccgagg 191
|| |||||||||
Sbjct: 357 aaatcaccgagg 368
>gb|AU161971.1|AU161971 AU161971 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6529, mRNA sequence
Length = 408
Score = 198 bits (100), Expect = 3e-048
Identities = 159/179 (88%)
Strand = Plus / Plus
Query: 149 gtcgccttcatcgtgcggaccgaaggttctcaagtcaccgaggatgagatcaagcaattc 208
||||||||||| || ||||| ||||| || || |||||||||||||||||||| |||||
Sbjct: 15 gtcgccttcattgtccggacagaaggctcagaaatcaccgaggatgagatcaagaaattc 74
Query: 209 gtcgccaaggaggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatc 268
|| || || ||||||| |||||||||| |||| ||||||| ||||||||||| ||||||
Sbjct: 75 gttgcaaaanaggtggtgttctacaagaggatcaacaaggtgttcttcaccgattccatc 134
Query: 269 cccaagaacccgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccgg 327
||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 135 cccaagaacccttccggcaagatcctcaggaaggacttgagagccaggctcgccgccgg 193
>gb|CV722521.1|CV722521 YTPSP--01-K02.b1 TPSP-overexpression transgenic rice yeast two
hybrid lambda phage cDNA library (YTPSP) Oryza sativa
(japonica cultivar-group) cDNA clone YTPSP--01-K02, mRNA
sequence
Length = 515
Score = 192 bits (97), Expect = 2e-046
Identities = 133/145 (91%)
Strand = Plus / Minus
Query: 183 tcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagatcc 242
|||||||||||||||||||| ||||||| || || |||||||| |||||||||| ||||
Sbjct: 495 tcaccgaggatgagatcaagaaattcgttgcaaaagaggtggtgttctacaagaggatca 436
Query: 243 acaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaagg 302
||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||||
Sbjct: 435 acaaggtgttcttcaccgattccatccccaagaacccttccggcaagatcctcaggaagg 376
Query: 303 acttgagagccaggctcgccgccgg 327
|||||||||||||||||||||||||
Sbjct: 375 acttgagagccaggctcgccgccgg 351
>gb|D41813.1|D41813 RICS4636A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 413
Score = 186 bits (94), Expect = 1e-044
Identities = 130/142 (91%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 228 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaacggc 287
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaat 120
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 288 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgtctcgat 347
Query: 121 gaacgatgaccttgctggtgaa 142
||| ||||| ||||| ||||||
Sbjct: 348 gaaggatgatcttgccggtgaa 369
>dbj|AP004115.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1119_A07,
*** SEQUENCING IN PROGRESS ***
Length = 110900
Score = 178 bits (90), Expect = 2e-042
Identities = 108/114 (94%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 2958 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 2899
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 114
|||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 2898 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgt 2845
Score = 153 bits (77), Expect = 1e-034
Identities = 101/109 (92%)
Strand = Plus / Minus
Query: 219 aggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatccccaagaacc 278
||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||||||||
Sbjct: 2567 aggtggtgttctacaagaggatcaacaaggtgttcttcaccgattccatccccaagaacc 2508
Query: 279 cgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccgg 327
| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2507 cttccggcaagatcctcaggaaggacttgagagccaggctcgccgccgg 2459
Score = 71.9 bits (36), Expect = 4e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 119 atgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttct 178
||||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| ||
Sbjct: 2746 atgaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctca 2687
Query: 179 caagtcaccgaggatgagatcaagcaattcgt 210
|| |||||||||||||||||||| |||||||
Sbjct: 2686 gaaatcaccgaggatgagatcaagaaattcgt 2655
>dbj|AP004838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0504A05
Length = 148360
Score = 178 bits (90), Expect = 2e-042
Identities = 108/114 (94%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 101902 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 101961
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 114
|||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 101962 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgt 102015
Score = 153 bits (77), Expect = 1e-034
Identities = 101/109 (92%)
Strand = Plus / Plus
Query: 219 aggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatccccaagaacc 278
||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||||||||
Sbjct: 102293 aggtggtgttctacaagaggatcaacaaggtgttcttcaccgattccatccccaagaacc 102352
Query: 279 cgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccgg 327
| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 102353 cttccggcaagatcctcaggaaggacttgagagccaggctcgccgccgg 102401
Score = 71.9 bits (36), Expect = 4e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 119 atgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttct 178
||||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| ||
Sbjct: 102114 atgaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctca 102173
Query: 179 caagtcaccgaggatgagatcaagcaattcgt 210
|| |||||||||||||||||||| |||||||
Sbjct: 102174 gaaatcaccgaggatgagatcaagaaattcgt 102205
>gb|AACV01003472.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003472, whole
genome shotgun sequence
Length = 23863
Score = 178 bits (90), Expect = 2e-042
Identities = 108/114 (94%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 20572 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 20631
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 114
|||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 20632 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgt 20685
Score = 153 bits (77), Expect = 1e-034
Identities = 101/109 (92%)
Strand = Plus / Plus
Query: 219 aggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatccccaagaacc 278
||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||||||||
Sbjct: 20963 aggtggtgttctacaagaggatcaacaaggtgttcttcaccgattccatccccaagaacc 21022
Query: 279 cgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccgg 327
| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 21023 cttccggcaagatcctcaggaaggacttgagagccaggctcgccgccgg 21071
Score = 71.9 bits (36), Expect = 4e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 119 atgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttct 178
||||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| ||
Sbjct: 20784 atgaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctca 20843
Query: 179 caagtcaccgaggatgagatcaagcaattcgt 210
|| |||||||||||||||||||| |||||||
Sbjct: 20844 gaaatcaccgaggatgagatcaagaaattcgt 20875
>ref|NT_107176.1| Oryza sativa (japonica cultivar-group)
Length = 1593847
Score = 178 bits (90), Expect = 2e-042
Identities = 108/114 (94%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 1250936 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 1250995
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 114
|||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 1250996 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgt 1251049
Score = 153 bits (77), Expect = 1e-034
Identities = 101/109 (92%)
Strand = Plus / Plus
Query: 219 aggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatccccaagaacc 278
||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||||||||
Sbjct: 1251327 aggtggtgttctacaagaggatcaacaaggtgttcttcaccgattccatccccaagaacc 1251386
Query: 279 cgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccgg 327
| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1251387 cttccggcaagatcctcaggaaggacttgagagccaggctcgccgccgg 1251435
Score = 71.9 bits (36), Expect = 4e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 119 atgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttct 178
||||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| ||
Sbjct: 1251148 atgaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctca 1251207
Query: 179 caagtcaccgaggatgagatcaagcaattcgt 210
|| |||||||||||||||||||| |||||||
Sbjct: 1251208 gaaatcaccgaggatgagatcaagaaattcgt 1251239
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 178 bits (90), Expect = 2e-042
Identities = 108/114 (94%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 4370547 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 4370606
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 114
|||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 4370607 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgt 4370660
Score = 153 bits (77), Expect = 1e-034
Identities = 101/109 (92%)
Strand = Plus / Plus
Query: 219 aggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatccccaagaacc 278
||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||||||||
Sbjct: 4370938 aggtggtgttctacaagaggatcaacaaggtgttcttcaccgattccatccccaagaacc 4370997
Query: 279 cgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccgg 327
| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4370998 cttccggcaagatcctcaggaaggacttgagagccaggctcgccgccgg 4371046
Score = 71.9 bits (36), Expect = 4e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 119 atgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttct 178
||||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| ||
Sbjct: 4370759 atgaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctca 4370818
Query: 179 caagtcaccgaggatgagatcaagcaattcgt 210
|| |||||||||||||||||||| |||||||
Sbjct: 4370819 gaaatcaccgaggatgagatcaagaaattcgt 4370850
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 178 bits (90), Expect = 2e-042
Identities = 108/114 (94%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 4370547 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 4370606
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 114
|||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 4370607 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgt 4370660
Score = 153 bits (77), Expect = 1e-034
Identities = 101/109 (92%)
Strand = Plus / Plus
Query: 219 aggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatccccaagaacc 278
||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||||||||
Sbjct: 4370938 aggtggtgttctacaagaggatcaacaaggtgttcttcaccgattccatccccaagaacc 4370997
Query: 279 cgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccgg 327
| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4370998 cttccggcaagatcctcaggaaggacttgagagccaggctcgccgccgg 4371046
Score = 71.9 bits (36), Expect = 4e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 119 atgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttct 178
||||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| ||
Sbjct: 4370759 atgaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctca 4370818
Query: 179 caagtcaccgaggatgagatcaagcaattcgt 210
|| |||||||||||||||||||| |||||||
Sbjct: 4370819 gaaatcaccgaggatgagatcaagaaattcgt 4370850
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 178 bits (90), Expect = 2e-042
Identities = 108/114 (94%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 4285088 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 4285147
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 114
|||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 4285148 cgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgt 4285201
Score = 153 bits (77), Expect = 1e-034
Identities = 101/109 (92%)
Strand = Plus / Plus
Query: 219 aggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatccccaagaacc 278
||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||||||||
Sbjct: 4285479 aggtggtgttctacaagaggatcaacaaggtgttcttcaccgattccatccccaagaacc 4285538
Query: 279 cgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccgg 327
| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4285539 cttccggcaagatcctcaggaaggacttgagagccaggctcgccgccgg 4285587
Score = 71.9 bits (36), Expect = 4e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 119 atgaacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttct 178
||||| ||||| ||||| |||||| | || ||||||||||| || ||||| ||||| ||
Sbjct: 4285300 atgaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctca 4285359
Query: 179 caagtcaccgaggatgagatcaagcaattcgt 210
|| |||||||||||||||||||| |||||||
Sbjct: 4285360 gaaatcaccgaggatgagatcaagaaattcgt 4285391
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 47 caggtgccgccggcggagctggaggcgctcctcatcacgcacccg 91
|||||||||||||| ||||||||| |||| |||||| | ||||||
Sbjct: 28696513 caggtgccgccggccgagctggagtcgctgctcatcgctcacccg 28696469
Score = 46.1 bits (23), Expect = 0.023
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggt 51
||||||||||||| | |||||||| ||||||| | |||||| ||||||||
Sbjct: 28696630 cttcatcgtcgaccgtgtcaaggagctcatcaaattcaaggggttccaggt 28696580
>gb|D41112.1|D41112 RICS3391A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 332
Score = 159 bits (80), Expect = 2e-036
Identities = 105/114 (92%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 196 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 255
Query: 61 ggagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgt 114
|||||||||||| | |||||||| |||||| |||||||||||| |||||||||
Sbjct: 256 cgagctggaggcgatgctcatcactcacccgnagatcaaggacgncgccgtcgt 309
>gb|AU184583.1|AU184583 AU184583 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3042, mRNA sequence
Length = 449
Score = 155 bits (78), Expect = 3e-035
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 218 gaggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatccccaagaac 277
|||||||| |||||||||| |||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 1 gaggtggtgttctacaagaggatcaacaaggtgttcttcaccgattccatccccaagaac 60
Query: 278 ccgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccgg 327
|| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 ccttccggcaagatcctcaggaaggacttgagagccaggctcgccgccgg 110
>gb|AU223467.1|AU223467 AU223467 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6529, mRNA sequence
Length = 451
Score = 155 bits (78), Expect = 3e-035
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 218 gaggtggttttctacaagaagatccacaaggtcttcttcaccgaatccatccccaagaac 277
|||||||| |||||||||| |||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 1 gaggtggtgttctacaagaggatcaacaaggtgttcttcaccgattccatccccaagaac 60
Query: 278 ccgtcgggcaagatcctgaggaaggacttgagagccaggctcgccgccgg 327
|| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 ccttccggcaagatcctcaggaaggacttgagagccaggctcgccgccgg 110
>gb|AU166255.1|AU166255 AU166255 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S15538, mRNA sequence
Length = 454
Score = 143 bits (72), Expect = 1e-031
Identities = 93/100 (93%)
Strand = Plus / Plus
Query: 228 tctacaagaagatccacaaggtcttcttcaccgaatccatccccaagaacccgtcgggca 287
||||||||| |||| ||||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct: 1 tctacaagaggatcaacaaggtgttcttcaccgattccatccccaagaacccttccggca 60
Query: 288 agatcctgaggaaggacttgagagccaggctcgccgccgg 327
||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 agatcctcaggaaggacttgagagccaggctcgccgccgg 100
>gb|AU161714.1|AU161714 AU161714 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5138, mRNA sequence
Length = 508
Score = 133 bits (67), Expect = 1e-028
Identities = 131/147 (89%), Gaps = 4/147 (2%)
Strand = Plus / Plus
Query: 183 tcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttc-tacaagaagatc 241
|||||||||||||||||||| ||||||| || || |||||||| ||| ||||||| ||||
Sbjct: 24 tcaccgaggatgagatcaagaaattcgt-gcaaaagaggtggtgttcctacaaga-gatc 81
Query: 242 cacaaggtcttcttcaccgaatcca-tccccaagaacccgtcgggcaagatcctgaggaa 300
|| | || ||||||||||| |||| ||||||||||||| || ||||||||||| |||||
Sbjct: 82 caacaagtgttcttcaccgattccaatccccaagaacccttccggcaagatcctcaggaa 141
Query: 301 ggacttgagagccaggctcgccgccgg 327
|||||||||||||||||||||||||||
Sbjct: 142 ggacttgagagccaggctcgccgccgg 168
>gb|AU078376.1|AU078376 AU078376 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S21280_1A, mRNA sequence
Length = 424
Score = 129 bits (65), Expect = 2e-027
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 243 acaaggtcttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaagg 302
||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||||
Sbjct: 1 acaaggtgttcttcaccgattccatccccaagaacccttccggcaagatcctcaggaagg 60
Query: 303 acttgagagccaggctcgccgccgg 327
|||||||||||||||||||||||||
Sbjct: 61 acttgagagccaggctcgccgccgg 85
>gb|CB684593.1|CB684593 OSJNEf14E12.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14E12 5', mRNA sequence
Length = 794
Score = 127 bits (64), Expect = 8e-027
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 708 cttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggc 767
Query: 61 ggagctggaggcgctcctcatcac 84
|||||||||||||| ||||||||
Sbjct: 768 cgagctggaggcgctgctcatcac 791
>gb|AU097402.1|AU097402 AU097402 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4636, mRNA sequence
Length = 504
Score = 115 bits (58), Expect = 3e-023
Identities = 73/77 (94%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 251 ttcttcaccgaatccatccccaagaacccgtcgggcaagatcctgaggaaggacttgaga 310
||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 91 ttcttcaccgantccatccccaagaaccc-tccggcaagatcctcaggaaggacttgaga 149
Query: 311 gccaggctcgccgccgg 327
|||||||||||||||||
Sbjct: 150 gccaggctcgccgccgg 166
>dbj|AK105636.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-D12, full
insert sequence
Length = 2288
Score = 85.7 bits (43), Expect = 3e-014
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||||||| | |||||||| ||||||| | |||||| |||||||||||||||||
Sbjct: 1613 cttcatcgtcgaccgtgtcaaggagctcatcaaattcaaggggttccaggtgccgccggc 1672
Query: 61 ggagctggaggcgctcctcatcacgcacccg 91
||||||||| |||| |||||| | ||||||
Sbjct: 1673 cgagctggagtcgctgctcatcgctcacccg 1703
>ref|XM_467290.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2288
Score = 85.7 bits (43), Expect = 3e-014
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||||||| | |||||||| ||||||| | |||||| |||||||||||||||||
Sbjct: 1613 cttcatcgtcgaccgtgtcaaggagctcatcaaattcaaggggttccaggtgccgccggc 1672
Query: 61 ggagctggaggcgctcctcatcacgcacccg 91
||||||||| |||| |||||| | ||||||
Sbjct: 1673 cgagctggagtcgctgctcatcgctcacccg 1703
>dbj|AK069932.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036P12, full
insert sequence
Length = 2066
Score = 79.8 bits (40), Expect = 2e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| || |||||||||||||||||||| |||| |||||||||||| | || ||
Sbjct: 1401 cttcatcgtggataggctcaaggagatcatcaaatacaggggcttccaggtagcccctgc 1460
Query: 61 ggagctggaggcgctcctcatcac 84
||||||||||| || ||||||||
Sbjct: 1461 agagctggaggcccttctcatcac 1484
Score = 46.1 bits (23), Expect = 0.023
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 198 tcaagcaattcgtcgccaaggaggtggttttctacaagaagatccacaaggtcttcttc 256
|||| |||||||| || ||||||||| | | |||||||||||||| |||||||||||
Sbjct: 1601 tcaaacaattcgtagcaaaggaggtgatctactacaagaagatccgggaggtcttcttc 1659
>gb|AACV01017731.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017731, whole
genome shotgun sequence
Length = 23379
Score = 79.8 bits (40), Expect = 2e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| || |||||||||||||||||||| |||| |||||||||||| | || ||
Sbjct: 6848 cttcatcgtggataggctcaaggagatcatcaaatacaggggcttccaggtagcccctgc 6907
Query: 61 ggagctggaggcgctcctcatcac 84
||||||||||| || ||||||||
Sbjct: 6908 agagctggaggcccttctcatcac 6931
>ref|XM_480952.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2066
Score = 79.8 bits (40), Expect = 2e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| || |||||||||||||||||||| |||| |||||||||||| | || ||
Sbjct: 1401 cttcatcgtggataggctcaaggagatcatcaaatacaggggcttccaggtagcccctgc 1460
Query: 61 ggagctggaggcgctcctcatcac 84
||||||||||| || ||||||||
Sbjct: 1461 agagctggaggcccttctcatcac 1484
Score = 46.1 bits (23), Expect = 0.023
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 198 tcaagcaattcgtcgccaaggaggtggttttctacaagaagatccacaaggtcttcttc 256
|||| |||||||| || ||||||||| | | |||||||||||||| |||||||||||
Sbjct: 1601 tcaaacaattcgtagcaaaggaggtgatctactacaagaagatccgggaggtcttcttc 1659
>dbj|AP003859.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1033_B09
Length = 120648
Score = 79.8 bits (40), Expect = 2e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| || |||||||||||||||||||| |||| |||||||||||| | || ||
Sbjct: 55240 cttcatcgtggataggctcaaggagatcatcaaatacaggggcttccaggtagcccctgc 55299
Query: 61 ggagctggaggcgctcctcatcac 84
||||||||||| || ||||||||
Sbjct: 55300 agagctggaggcccttctcatcac 55323
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 79.8 bits (40), Expect = 2e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| || |||||||||||||||||||| |||| |||||||||||| | || ||
Sbjct: 8639123 cttcatcgtggataggctcaaggagatcatcaaatacaggggcttccaggtagcccctgc 8639182
Query: 61 ggagctggaggcgctcctcatcac 84
||||||||||| || ||||||||
Sbjct: 8639183 agagctggaggcccttctcatcac 8639206
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggt 51
||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 21628560 cttcatcgtggaccggctcaaggagctcatcaagtacaagggcttccaggt 21628510
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067
genomic scaffold, whole genome shotgun sequence
Length = 19501165
Score = 79.8 bits (40), Expect = 2e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| || |||||||||||||||||||| |||| |||||||||||| | || ||
Sbjct: 684183 cttcatcgtggataggctcaaggagatcatcaaatacaggggcttccaggtagcccctgc 684242
Query: 61 ggagctggaggcgctcctcatcac 84
||||||||||| || ||||||||
Sbjct: 684243 agagctggaggcccttctcatcac 684266
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggt 51
||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 13106400 cttcatcgtggaccggctcaaggagctcatcaagtacaagggcttccaggt 13106350
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 79.8 bits (40), Expect = 2e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| || |||||||||||||||||||| |||| |||||||||||| | || ||
Sbjct: 8286189 cttcatcgtggataggctcaaggagatcatcaaatacaggggcttccaggtagcccctgc 8286248
Query: 61 ggagctggaggcgctcctcatcac 84
||||||||||| || ||||||||
Sbjct: 8286249 agagctggaggcccttctcatcac 8286272
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggt 51
||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 20708406 cttcatcgtggaccggctcaaggagctcatcaagtacaagggcttccaggt 20708356
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 79.8 bits (40), Expect = 2e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
||||||||| || |||||||||||||||||||| |||| |||||||||||| | || ||
Sbjct: 8871597 cttcatcgtggataggctcaaggagatcatcaaatacaggggcttccaggtagcccctgc 8871656
Query: 61 ggagctggaggcgctcctcatcac 84
||||||||||| || ||||||||
Sbjct: 8871657 agagctggaggcccttctcatcac 8871680
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggt 51
||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 21866647 cttcatcgtggaccggctcaaggagctcatcaagtacaagggcttccaggt 21866597
>gb|CB654377.1|CB654377 OSJNEc06K19.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc06K19 3', mRNA sequence
Length = 759
Score = 77.8 bits (39), Expect = 7e-012
Identities = 186/235 (79%)
Strand = Plus / Minus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcg 61
||||| || ||| |||||||||| || || || |||||||| ||||| || || || |||
Sbjct: 616 ttcattgttgaccggctcaaggaaataataaaatacaaggggttccaagtacctcctgcg 557
Query: 62 gagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaatg 121
|| || || || || |||||||| ||||| || |||||||| || ||||| ||| | |||
Sbjct: 556 gaacttgaagctcttctcatcacacaccctgatatcaaggatgctgccgttgtaccgatg 497
Query: 122 aacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctcaa 181
| || || |||| |||||| | ||||| || ||||| || |||| ||||| ||| |
Sbjct: 496 atagacgaaattgcgggtgaagtgccggttgcattcattgtacggattgaaggatctgca 437
Query: 182 gtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaaga 236
||| |||| |||||||||||||||| || || |||||||| |||||||||||||
Sbjct: 436 atcagcgagaatgagatcaagcaatttgtggcaaaggaggttgttttctacaaga 382
>gb|CB656113.1|CB656113 OSJNEc10B07.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10B07 3', mRNA sequence
Length = 769
Score = 77.8 bits (39), Expect = 7e-012
Identities = 186/235 (79%)
Strand = Plus / Minus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcg 61
||||| || ||| |||||||||| || || || |||||||| ||||| || || || |||
Sbjct: 644 ttcattgttgaccggctcaaggaaataataaaatacaaggggttccaagtacctcctgcg 585
Query: 62 gagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaatg 121
|| || || || || |||||||| ||||| || |||||||| || ||||| ||| | |||
Sbjct: 584 gaacttgaagctcttctcatcacacaccctgatatcaaggatgctgccgttgtaccgatg 525
Query: 122 aacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctcaa 181
| || || |||| |||||| | ||||| || ||||| || |||| ||||| ||| |
Sbjct: 524 atagacgaaattgcgggtgaagtgccggttgcattcattgtacggattgaaggatctgca 465
Query: 182 gtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaaga 236
||| |||| |||||||||||||||| || || |||||||| |||||||||||||
Sbjct: 464 atcagcgagaatgagatcaagcaatttgtggcaaaggaggttgttttctacaaga 410
>gb|CB660533.1|CB660533 OSJNEd02G15.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd02G15 5', mRNA sequence
Length = 855
Score = 77.8 bits (39), Expect = 7e-012
Identities = 186/235 (79%)
Strand = Plus / Plus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcg 61
||||| || ||| |||||||||| || || || |||||||| ||||| || || || |||
Sbjct: 489 ttcattgttgaccggctcaaggaaataataaaatacaaggggttccaagtacctcctgcg 548
Query: 62 gagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaatg 121
|| || || || || |||||||| ||||| || |||||||| || ||||| ||| | |||
Sbjct: 549 gaacttgaagctcttctcatcacacaccctgatatcaaggatgctgccgttgtaccgatg 608
Query: 122 aacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctcaa 181
| || || |||| |||||| | ||||| || ||||| || |||| ||||| ||| |
Sbjct: 609 atagacgaaattgcgggtgaagtgccggttgcattcattgtacggattgaaggatctgca 668
Query: 182 gtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaaga 236
||| |||| |||||||||||||||| || || |||||||| |||||||||||||
Sbjct: 669 atcagcgagaatgagatcaagcaatttgtggcaaaggaggttgttttctacaaga 723
>gb|CB660534.1|CB660534 OSJNEd02G15.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd02G15 3', mRNA sequence
Length = 729
Score = 77.8 bits (39), Expect = 7e-012
Identities = 186/235 (79%)
Strand = Plus / Minus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcg 61
||||| || ||| |||||||||| || || || |||||||| ||||| || || || |||
Sbjct: 578 ttcattgttgaccggctcaaggaaataataaaatacaaggggttccaagtacctcctgcg 519
Query: 62 gagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaatg 121
|| || || || || |||||||| ||||| || |||||||| || ||||| ||| | |||
Sbjct: 518 gaacttgaagctcttctcatcacacaccctgatatcaaggatgctgccgttgtaccgatg 459
Query: 122 aacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctcaa 181
| || || |||| |||||| | ||||| || ||||| || |||| ||||| ||| |
Sbjct: 458 atagacgaaattgcgggtgaagtgccggttgcattcattgtacggattgaaggatctgca 399
Query: 182 gtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaaga 236
||| |||| |||||||||||||||| || || |||||||| |||||||||||||
Sbjct: 398 atcagcgagaatgagatcaagcaatttgtggcaaaggaggttgttttctacaaga 344
>gb|CB664984.1|CB664984 OSJNEd11A15.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11A15 3', mRNA sequence
Length = 755
Score = 77.8 bits (39), Expect = 7e-012
Identities = 186/235 (79%)
Strand = Plus / Minus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcg 61
||||| || ||| |||||||||| || || || |||||||| ||||| || || || |||
Sbjct: 620 ttcattgttgaccggctcaaggaaataataaaatacaaggggttccaagtacctcctgcg 561
Query: 62 gagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaatg 121
|| || || || || |||||||| ||||| || |||||||| || ||||| ||| | |||
Sbjct: 560 gaacttgaagctcttctcatcacacaccctgatatcaaggatgctgccgttgtaccgatg 501
Query: 122 aacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctcaa 181
| || || |||| |||||| | ||||| || ||||| || |||| ||||| ||| |
Sbjct: 500 atagacgaaattgcgggtgaagtgccggttgcattcattgtacggattgaaggatctgca 441
Query: 182 gtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaaga 236
||| |||| |||||||||||||||| || || |||||||| |||||||||||||
Sbjct: 440 atcagcgagaatgagatcaagcaatttgtggcaaaggaggttgttttctacaaga 386
>gb|CB667032.1|CB667032 OSJNEd14C22.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14C22 3', mRNA sequence
Length = 812
Score = 77.8 bits (39), Expect = 7e-012
Identities = 186/235 (79%)
Strand = Plus / Minus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcg 61
||||| || ||| |||||||||| || || || |||||||| ||||| || || || |||
Sbjct: 643 ttcattgttgaccggctcaaggaaataataaaatacaaggggttccaagtacctcctgcg 584
Query: 62 gagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaatg 121
|| || || || || |||||||| ||||| || |||||||| || ||||| ||| | |||
Sbjct: 583 gaacttgaagctcttctcatcacacaccctgatatcaaggatgctgccgttgtaccgatg 524
Query: 122 aacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctcaa 181
| || || |||| |||||| | ||||| || ||||| || |||| ||||| ||| |
Sbjct: 523 atagacgaaattgcgggtgaagtgccggttgcattcattgtacggattgaaggatctgca 464
Query: 182 gtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaaga 236
||| |||| |||||||||||||||| || || |||||||| |||||||||||||
Sbjct: 463 atcagcgagaatgagatcaagcaatttgtggcaaaggaggttgttttctacaaga 409
>gb|CB669744.1|CB669744 OSJNEe02H12.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02H12 3', mRNA sequence
Length = 799
Score = 77.8 bits (39), Expect = 7e-012
Identities = 186/235 (79%)
Strand = Plus / Minus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcg 61
||||| || ||| |||||||||| || || || |||||||| ||||| || || || |||
Sbjct: 600 ttcattgttgaccggctcaaggaaataataaaatacaaggggttccaagtacctcctgcg 541
Query: 62 gagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaatg 121
|| || || || || |||||||| ||||| || |||||||| || ||||| ||| | |||
Sbjct: 540 gaacttgaagctcttctcatcacacaccctgatatcaaggatgctgccgttgtaccgatg 481
Query: 122 aacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctcaa 181
| || || |||| |||||| | ||||| || ||||| || |||| ||||| ||| |
Sbjct: 480 atagacgaaattgcgggtgaagtgccggttgcattcattgtacggattgaaggatctgca 421
Query: 182 gtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaaga 236
||| |||| |||||||||||||||| || || |||||||| |||||||||||||
Sbjct: 420 atcagcgagaatgagatcaagcaatttgtggcaaaggaggttgttttctacaaga 366
>gb|CB673005.1|CB673005 OSJNEe07F05.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe07F05 3', mRNA sequence
Length = 734
Score = 77.8 bits (39), Expect = 7e-012
Identities = 186/235 (79%)
Strand = Plus / Minus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcg 61
||||| || ||| |||||||||| || || || |||||||| ||||| || || || |||
Sbjct: 580 ttcattgttgaccggctcaaggaaataataaaatacaaggggttccaagtacctcctgcg 521
Query: 62 gagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaatg 121
|| || || || || |||||||| ||||| || |||||||| || ||||| ||| | |||
Sbjct: 520 gaacttgaagctcttctcatcacacaccctgatatcaaggatgctgccgttgtaccgatg 461
Query: 122 aacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctcaa 181
| || || |||| |||||| | ||||| || ||||| || |||| ||||| ||| |
Sbjct: 460 atagacgaaattgcgggtgaagtgccggttgcattcattgtacggattgaaggatctgca 401
Query: 182 gtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaaga 236
||| |||| |||||||||||||||| || || |||||||| |||||||||||||
Sbjct: 400 atcagcgagaatgagatcaagcaatttgtggcaaaggaggttgttttctacaaga 346
>dbj|AK068985.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002B16, full
insert sequence
Length = 2055
Score = 77.8 bits (39), Expect = 7e-012
Identities = 186/235 (79%)
Strand = Plus / Plus
Query: 2 ttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggcg 61
||||| || ||| |||||||||| || || || |||||||| ||||| || || || |||
Sbjct: 1462 ttcattgttgaccggctcaaggaaataataaaatacaaggggttccaagtacctcctgcg 1521
Query: 62 gagctggaggcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtatcaatg 121
|| || || || || |||||||| ||||| || |||||||| || ||||| ||| | |||
Sbjct: 1522 gaacttgaagctcttctcatcacacaccctgatatcaaggatgctgccgttgtaccgatg 1581
Query: 122 aacgatgaccttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggttctcaa 181
| || || |||| |||||| | ||||| || ||||| || |||| ||||| ||| |
Sbjct: 1582 atagacgaaattgcgggtgaagtgccggttgcattcattgtacggattgaaggatctgca 1641
Query: 182 gtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaaga 236
||| |||| |||||||||||||||| || || |||||||| |||||||||||||
Sbjct: 1642 atcagcgagaatgagatcaagcaatttgtggcaaaggaggttgttttctacaaga 1696
>dbj|AK120964.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040C04, full
insert sequence
Length = 1979
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggt 51
||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 1384 cttcatcgtggaccggctcaaggagctcatcaagtacaagggcttccaggt 1434
Score = 60.0 bits (30), Expect = 2e-006
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 183 tcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagatcc 242
||||||| || ||||||||||| | |||||| ||| ||||||| |||||||||| | | |
Sbjct: 1566 tcaccgacgacgagatcaagcagtacgtcgcaaagcaggtggtgttctacaagaggctgc 1625
Query: 243 acaaggtcttcttc 256
||||| ||||||||
Sbjct: 1626 acaagatcttcttc 1639
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,004,707
Number of Sequences: 438736
Number of extensions: 1004707
Number of successful extensions: 6535
Number of sequences better than 0.5: 73
Number of HSP's better than 0.5 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6230
Number of HSP's gapped (non-prelim): 300
length of query: 638
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 617
effective length of database: 2,791,206,460
effective search space: 1722174385820
effective search space used: 1722174385820
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)