BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071103.2.1
(570 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK108949.1| Oryza sativa (japonica cultivar-group) cDNA... 228 3e-057
emb|X56787.1|OSLMRNAC O.sativa L. mRNA for endochitinase 228 3e-057
dbj|D16223.1|RICCHT3 Oryza sativa (japonica cultivar-group)... 167 8e-039
dbj|AK061280.1| Oryza sativa (japonica cultivar-group) cDNA... 167 8e-039
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 167 8e-039
dbj|AP003685.3| Oryza sativa (japonica cultivar-group) geno... 167 8e-039
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 167 8e-039
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 167 8e-039
gb|AACV01014964.1| Oryza sativa (japonica cultivar-group) c... 159 2e-036
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 159 2e-036
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 159 2e-036
gb|AC132492.3| Oryza sativa (japonica cultivar-group) chrom... 157 8e-036
gb|AACV01012113.1| Oryza sativa (japonica cultivar-group) c... 157 8e-036
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 157 8e-036
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 157 8e-036
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 157 8e-036
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 157 8e-036
gb|CB672878.1|CB672878 OSJNEe07C10.r OSJNEe Oryza sativa (j... 155 3e-035
gb|CB684719.1|CB684719 OSJNEf14I06.f OSJNEf Oryza sativa (j... 155 3e-035
gb|CB684720.1|CB684720 OSJNEf14I06.r OSJNEf Oryza sativa (j... 155 3e-035
dbj|D16221.1|RICCHT1 Oryza sativa (japonica cultivar-group)... 155 3e-035
dbj|AK061042.1| Oryza sativa (japonica cultivar-group) cDNA... 155 3e-035
dbj|AK099339.1| Oryza sativa (japonica cultivar-group) cDNA... 155 3e-035
dbj|AK104020.1| Oryza sativa (japonica cultivar-group) cDNA... 155 3e-035
dbj|AK105798.1| Oryza sativa (japonica cultivar-group) cDNA... 155 3e-035
gb|AACV01014965.1| Oryza sativa (japonica cultivar-group) c... 155 3e-035
emb|X56063.1|OSENDO O.sativa mRNA for endochitinase 155 3e-035
gb|CA756422.1|CA756422 BR030042000_PLATE_B01_2_010.ab1 OA O... 149 2e-033
dbj|D16222.1|RICCHT2 Oryza sativa (japonica cultivar-group)... 149 2e-033
gb|AY378172.1| Oryza sativa (japonica cultivar-group) OsmCh... 139 2e-030
gb|C98575.1|C98575 C98575 Rice panicle at flowering stage O... 131 4e-028
gb|CF323069.1|CF323069 HDN--02-N11.g1 OsHDAC1-overexpressin... 131 4e-028
gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 ... 119 2e-024
gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 ... 119 2e-024
gb|AACV01006925.1| Oryza sativa (japonica cultivar-group) c... 119 2e-024
ref|XM_468715.1| Oryza sativa (japonica cultivar-group), mRNA 119 2e-024
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 119 2e-024
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 119 2e-024
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
gb|CF326349.1|CF326349 JMT1--05-N01.g1 AtJMT-overexpressing... 96 2e-017
gb|AU077767.1|AU077767 AU077767 Rice cDNA from young root O... 84 9e-014
gb|AQ287446.1|AQ287446 nbxb0030E24f CUGI Rice BAC Library O... 82 4e-013
gb|CB000861.1|CB000861 S345K_B10 Rice cold stress germinati... 82 4e-013
gb|CF324345.1|CF324345 HDN--06-E15.g1 OsHDAC1-overexpressin... 82 4e-013
gb|CF331228.1|CF331228 NACL--07-E08.b1 Rice callus plasmid ... 82 4e-013
gb|CF331229.1|CF331229 NACL--07-E08.g1 Rice callus plasmid ... 82 4e-013
gb|BP185058.1|BP185058 BP185058 pNS rice panicle cDNA, flow... 80 1e-012
dbj|AK070067.1| Oryza sativa (japonica cultivar-group) cDNA... 80 1e-012
gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11... 80 1e-012
gb|AACV01022031.1| Oryza sativa (japonica cultivar-group) c... 80 1e-012
ref|NM_197596.1| Oryza sativa (japonica cultivar-group) chi... 80 1e-012
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 80 1e-012
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 80 1e-012
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
gb|AU097550.1|AU097550 AU097550 Rice shoot Oryza sativa (ja... 70 1e-009
gb|CA754928.1|CA754928 BR030009000_PLATE_A07_49_051.ab1 OA ... 70 1e-009
gb|AACV01022034.1| Oryza sativa (japonica cultivar-group) c... 66 2e-008
ref|NM_197598.1| Oryza sativa (japonica cultivar-group) put... 66 2e-008
gb|C27564.1|C27564 C27564 Rice callus cDNA Oryza sativa (ja... 64 9e-008
dbj|AK063062.1| Oryza sativa (japonica cultivar-group) cDNA... 58 5e-006
gb|AACV01000748.1| Oryza sativa (japonica cultivar-group) c... 58 5e-006
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 58 5e-006
ref|NM_183568.1| Oryza sativa (japonica cultivar-group), p... 58 5e-006
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 58 5e-006
dbj|AP002070.1| Oryza sativa (japonica cultivar-group) geno... 58 5e-006
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 58 5e-006
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 58 5e-006
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 58 5e-006
gb|C19108.1|C19108 C19108 Rice green shoot Oryza sativa (ja... 54 8e-005
gb|CB683115.1|CB683115 OSJNEf11B13.f OSJNEf Oryza sativa (j... 54 8e-005
gb|CF276539.1|CF276539 14ETL--01-L15.g1 Rice etiolated leaf... 54 8e-005
gb|CF277595.1|CF277595 14ETL--03-D06.b1 Rice etiolated leaf... 54 8e-005
gb|CF277868.1|CF277868 14ETL--03-J01.b1 Rice etiolated leaf... 54 8e-005
gb|CF280049.1|CF280049 14ETL--06-J06.b1 Rice etiolated leaf... 54 8e-005
gb|CF281716.1|CF281716 14ETL--08-O04.b1 Rice etiolated leaf... 54 8e-005
gb|CF310438.1|CF310438 ABF--05-B10.b1 ABF3-overexpressing t... 54 8e-005
gb|CF310609.1|CF310609 ABF--05-F17.b1 ABF3-overexpressing t... 54 8e-005
gb|CF310877.1|CF310877 ABF--05-M16.b1 ABF3-overexpressing t... 54 8e-005
gb|CF310948.1|CF310948 ABF--05-O14.b1 ABF3-overexpressing t... 54 8e-005
dbj|AB003194.1| Oryza sativa (japonica cultivar-group) mRNA... 54 8e-005
dbj|AB054687.1| Oryza sativa (japonica cultivar-group) Cht4... 54 8e-005
dbj|AK060363.1| Oryza sativa (japonica cultivar-group) cDNA... 54 8e-005
dbj|AK099973.1| Oryza sativa (japonica cultivar-group) cDNA... 54 8e-005
gb|AACV01010037.1| Oryza sativa (japonica cultivar-group) c... 54 8e-005
ref|XM_473009.1| Oryza sativa (japonica cultivar-group), p... 54 8e-005
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 54 8e-005
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromoso... 54 8e-005
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
gb|AU082109.1|AU082109 AU082109 Rice panicle at flowering s... 52 3e-004
dbj|AB096140.1| Oryza sativa (japonica cultivar-group) chia... 52 3e-004
dbj|AK071013.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
dbj|AK104242.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
dbj|AK104426.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
gb|AACV01010039.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
ref|XM_473013.1| Oryza sativa (japonica cultivar-group), p... 52 3e-004
gb|AU082112.1|AU082112 AU082112 Rice panicle at flowering s... 50 0.001
gb|CF281458.1|CF281458 14ETL--08-I08.b1 Rice etiolated leaf... 50 0.001
gb|CF311469.1|CF311469 ABF--06-L04.g1 ABF3-overexpressing t... 50 0.001
gb|AU090552.1|AU090552 AU090552 Rice panicle at flowering s... 48 0.005
gb|AU090553.1|AU090553 AU090553 Rice panicle at flowering s... 48 0.005
gb|AU090556.1|AU090556 AU090556 Rice panicle at flowering s... 48 0.005
gb|AU090557.1|AU090557 AU090557 Rice panicle at flowering s... 48 0.005
gb|C98500.2|C98500 C98500 Rice panicle at flowering stage O... 48 0.005
gb|AU225167.1|AU225167 AU225167 Oryza sativa Koshihikari pi... 48 0.005
gb|AU225453.1|AU225453 AU225453 Oryza sativa Koshihikari pi... 48 0.005
gb|AU225565.1|AU225565 AU225565 Oryza sativa Koshihikari pi... 48 0.005
gb|AU225580.1|AU225580 AU225580 Oryza sativa Koshihikari pi... 48 0.005
gb|AU225608.1|AU225608 AU225608 Oryza sativa Koshihikari pi... 48 0.005
gb|CV720804.1|CV720804 YBH--01-O12.b1 Rice before heading y... 48 0.005
gb|CV720824.1|CV720824 YBH--01-P14.b1 Rice before heading y... 48 0.005
gb|CV721056.1|CV721056 YBH--02-L19.b1 Rice before heading y... 48 0.005
gb|CV721189.1|CV721189 YBH--03-D12.b1 Rice before heading y... 48 0.005
gb|CV721323.1|CV721323 YBH--03-L02.b1 Rice before heading y... 48 0.005
gb|CV721328.1|CV721328 YBH--03-L07.b1 Rice before heading y... 48 0.005
gb|CV721450.1|CV721450 YBH--04-C19.b1 Rice before heading y... 48 0.005
gb|CV721517.1|CV721517 YBH--04-G06.b1 Rice before heading y... 48 0.005
gb|CV722006.1|CV722006 YBH--06-B03.b1 Rice before heading y... 48 0.005
gb|CV722112.1|CV722112 YBH--06-H09.b1 Rice before heading y... 48 0.005
dbj|AB096139.1| Oryza sativa (japonica cultivar-group) Chia... 48 0.005
dbj|AK071196.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
dbj|AK101475.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
dbj|AK110261.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
gb|AC137616.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|AC135418.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|AACV01010846.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 48 0.005
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CB654174.1|CB654174 OSJNEc05O21.r OSJNEc Oryza sativa (j... 46 0.021
gb|AU089729.1|AU089729 AU089729 Rice green shoot Oryza sati... 44 0.081
gb|AU096318.1|AU096318 AU096318 Rice green shoot Oryza sati... 44 0.081
gb|AU225568.1|AU225568 AU225568 Oryza sativa Koshihikari pi... 44 0.081
gb|AU225623.1|AU225623 AU225623 Oryza sativa Koshihikari pi... 44 0.081
gb|AU225637.1|AU225637 AU225637 Oryza sativa Koshihikari pi... 44 0.081
gb|CF276538.1|CF276538 14ETL--01-L15.b1 Rice etiolated leaf... 44 0.081
gb|CF277596.1|CF277596 14ETL--03-D06.g1 Rice etiolated leaf... 44 0.081
gb|CF281459.1|CF281459 14ETL--08-I08.g1 Rice etiolated leaf... 44 0.081
gb|CV721213.1|CV721213 YBH--03-E20.b1 Rice before heading y... 44 0.081
gb|CV721336.1|CV721336 YBH--03-L17.b1 Rice before heading y... 44 0.081
gb|CV721946.1|CV721946 YBH--05-N21.b1 Rice before heading y... 44 0.081
gb|AU311903.1|AU311903 AU311903 Oryza sativa anther cDNA Or... 44 0.081
gb|CV732266.1|CV732266 FLO--06-K18.b1 Rice flower lambda ph... 42 0.32
gb|CV733601.1|CV733601 FLO--08-J10.b1 Rice flower lambda ph... 42 0.32
gb|CV734102.1|CV734102 FLO--09-F02.g1 Rice flower lambda ph... 42 0.32
gb|CV734430.1|CV734430 FLO--09-M18.b1 Rice flower lambda ph... 42 0.32
>dbj|AK108949.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-C03, full
insert sequence
Length = 979
Score = 228 bits (115), Expect = 3e-057
Identities = 294/353 (83%), Gaps = 3/353 (0%)
Strand = Plus / Minus
Query: 214 ccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcg 273
|||||||||||||| | ||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 555 ccgtgcccgcactccagcccgccgttgacgatgttggtgatcacgccgtaccccggcgc- 497
Query: 274 ccccggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtgg 333
||| || ||||| ||| || | || ||||| |||| |||||||||||||| |||||
Sbjct: 496 --ccgccccgccgcggcgtcggccggcgagggcgcccaccgccccgtgatcacgtcgtgg 439
Query: 334 cacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatc 393
| |||||||||||| || ||| ||||||||||||||||||| |||||||| || | |
Sbjct: 438 ctcgacggcttgttcccctgcggcgtcatccagaaccacagcgccgtcttgaacgacacc 379
Query: 394 acggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgcccc 453
| ||||||||| || |||||||||||| | || |||||||| ||||| || | ||||
Sbjct: 378 gtcgcgtccgtcgccaccaggtccgggttgctcagcaggtccaccccgatcgccctcccc 319
Query: 454 gccgggccgtagttgtagttgaaggagatctggatggggccgcggccgaagtacttcttg 513
||||| ||||||||| |||||||||||| |||||||||||||||||| ||||||| |
Sbjct: 318 gccggcccgtagttgaagttgaaggagagttggatggggccgcggccgtagtacttgcgg 259
Query: 514 ccgggcgcgcacggccactgcggccgcggctcgcagtagtccgacggcgggtt 566
||||| ||||||||||||| |||| |||| ||||||||| |||||||||||
Sbjct: 258 ccgggggcgcacggccactccggcgagggctggcagtagtcggacggcgggtt 206
>emb|X56787.1|OSLMRNAC O.sativa L. mRNA for endochitinase
Length = 1186
Score = 228 bits (115), Expect = 3e-057
Identities = 294/353 (83%), Gaps = 3/353 (0%)
Strand = Plus / Minus
Query: 214 ccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcg 273
|||||||||||||| | ||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 890 ccgtgcccgcactccagcccgccgttgacgatgttggtgatcacgccgtaccccggcgc- 832
Query: 274 ccccggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtgg 333
||| || ||||| ||| || | || ||||| |||| |||||||||||||| |||||
Sbjct: 831 --ccgccccgccgcggcgtcggccggcgagggcgcccaccgccccgtgatcacgtcgtgg 774
Query: 334 cacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatc 393
| |||||||||||| || ||| ||||||||||||||||||| |||||||| || | |
Sbjct: 773 ctcgacggcttgttcccctgcggcgtcatccagaaccacagcgccgtcttgaacgacacc 714
Query: 394 acggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgcccc 453
| ||||||||| || |||||||||||| | || |||||||| ||||| || | ||||
Sbjct: 713 gtcgcgtccgtcgccaccaggtccgggttgctcagcaggtccaccccgatcgccctcccc 654
Query: 454 gccgggccgtagttgtagttgaaggagatctggatggggccgcggccgaagtacttcttg 513
||||| ||||||||| |||||||||||| |||||||||||||||||| ||||||| |
Sbjct: 653 gccggcccgtagttgaagttgaaggagagttggatggggccgcggccgtagtacttgcgg 594
Query: 514 ccgggcgcgcacggccactgcggccgcggctcgcagtagtccgacggcgggtt 566
||||| ||||||||||||| |||| |||| ||||||||| |||||||||||
Sbjct: 593 ccgggggcgcacggccactccggcgagggctggcagtagtcggacggcgggtt 541
>dbj|D16223.1|RICCHT3 Oryza sativa (japonica cultivar-group) Cht-3 gene for endochitinase,
complete cds
Length = 2808
Score = 167 bits (84), Expect = 8e-039
Identities = 207/248 (83%)
Strand = Plus / Minus
Query: 304 ggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatc 363
||||||||||| || |||||||| |||||||||||||||||| | ||| |||||
Sbjct: 2590 ggcgtccactggccggtgatcaccgcgtggcacgacggcttgggcgactgcggcgtcatc 2531
Query: 364 cagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggttg 423
|||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||||
Sbjct: 2530 cagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggttg 2471
Query: 424 ttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggagatc 483
||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct: 2470 ttgagcaggtcggagccgatggcctgccccgccgggccgtagttgtagttgtaggtgatc 2411
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcggccgcggc 543
|||||||| || |||||| ||||||||||||||| ||||||||||||| |||| |||
Sbjct: 2410 tggatgggtccccggccgtagtacttcttgccggcggcgcacggccactccggcttgggc 2351
Query: 544 tcgcagta 551
||||||||
Sbjct: 2350 tcgcagta 2343
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| || |||||||||| ||| | ||||| |||||||||
Sbjct: 2728 tcgcagtagcgcttgtagaacccgatccggtcggccaccttgtcgtccgcgccgtgcccg 2669
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||||||| |||||||
Sbjct: 2668 cactccacaccgccgttgatgatgttggtgatctcgccgta 2628
>dbj|AK061280.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F06, full
insert sequence
Length = 1169
Score = 167 bits (84), Expect = 8e-039
Identities = 207/248 (83%)
Strand = Plus / Minus
Query: 304 ggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatc 363
||||||||||| || |||||||| |||||||||||||||||| | ||| |||||
Sbjct: 835 ggcgtccactggccggtgatcaccgcgtggcacgacggcttgggcgactgcggcgtcatc 776
Query: 364 cagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggttg 423
|||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||||
Sbjct: 775 cagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggttg 716
Query: 424 ttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggagatc 483
||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct: 715 ttgagcaggtcggagccgatggcctgccccgccgggccgtagttgtagttgtaggtgatc 656
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcggccgcggc 543
|||||||| || |||||| ||||||||||||||| ||||||||||||| |||| |||
Sbjct: 655 tggatgggtccccggccgtagtacttcttgccggcggcgcacggccactccggcttgggc 596
Query: 544 tcgcagta 551
||||||||
Sbjct: 595 tcgcagta 588
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| || |||||||||| ||| | ||||| |||||||||
Sbjct: 973 tcgcagtagcgcttgtagaacccgatccggtcggccaccttgtcgtccgcgccgtgcccg 914
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||||||| |||||||
Sbjct: 913 cactccacaccgccgttgatgatgttggtgatctcgccgta 873
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 167 bits (84), Expect = 8e-039
Identities = 207/248 (83%)
Strand = Plus / Minus
Query: 304 ggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatc 363
||||||||||| || |||||||| |||||||||||||||||| | ||| |||||
Sbjct: 9509 ggcgtccactggccggtgatcaccgcgtggcacgacggcttgggcgactgcggcgtcatc 9450
Query: 364 cagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggttg 423
|||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||||
Sbjct: 9449 cagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggttg 9390
Query: 424 ttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggagatc 483
||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct: 9389 ttgagcaggtcggagccgatggcctgccccgccgggccgtagttgtagttgtaggtgatc 9330
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcggccgcggc 543
|||||||| || |||||| ||||||||||||||| ||||||||||||| |||| |||
Sbjct: 9329 tggatgggtccccggccgtagtacttcttgccggcggcgcacggccactccggcttgggc 9270
Query: 544 tcgcagta 551
||||||||
Sbjct: 9269 tcgcagta 9262
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 13120 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 13061
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 13060 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 13001
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 13000 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 12941
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 12940 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 12887
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 13256 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 13197
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 13196 cactccacgccgccgttgatgatgttggtcaccacgccgta 13156
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| || |||||||||| ||| | ||||| |||||||||
Sbjct: 9647 tcgcagtagcgcttgtagaacccgatccggtcggccaccttgtcgtccgcgccgtgcccg 9588
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||||||| |||||||
Sbjct: 9587 cactccacaccgccgttgatgatgttggtgatctcgccgta 9547
>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0548E04
Length = 138037
Score = 167 bits (84), Expect = 8e-039
Identities = 207/248 (83%)
Strand = Plus / Minus
Query: 304 ggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatc 363
||||||||||| || |||||||| |||||||||||||||||| | ||| |||||
Sbjct: 118743 ggcgtccactggccggtgatcaccgcgtggcacgacggcttgggcgactgcggcgtcatc 118684
Query: 364 cagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggttg 423
|||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||||
Sbjct: 118683 cagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggttg 118624
Query: 424 ttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggagatc 483
||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct: 118623 ttgagcaggtcggagccgatggcctgccccgccgggccgtagttgtagttgtaggtgatc 118564
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcggccgcggc 543
|||||||| || |||||| ||||||||||||||| ||||||||||||| |||| |||
Sbjct: 118563 tggatgggtccccggccgtagtacttcttgccggcggcgcacggccactccggcttgggc 118504
Query: 544 tcgcagta 551
||||||||
Sbjct: 118503 tcgcagta 118496
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 122354 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 122295
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 122294 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 122235
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 122234 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 122175
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 122174 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 122121
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 122490 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 122431
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 122430 cactccacgccgccgttgatgatgttggtcaccacgccgta 122390
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| || |||||||||| ||| | ||||| |||||||||
Sbjct: 118881 tcgcagtagcgcttgtagaacccgatccggtcggccaccttgtcgtccgcgccgtgcccg 118822
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||||||| |||||||
Sbjct: 118821 cactccacaccgccgttgatgatgttggtgatctcgccgta 118781
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 167 bits (84), Expect = 8e-039
Identities = 207/248 (83%)
Strand = Plus / Minus
Query: 304 ggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatc 363
||||||||||| || |||||||| |||||||||||||||||| | ||| |||||
Sbjct: 9509 ggcgtccactggccggtgatcaccgcgtggcacgacggcttgggcgactgcggcgtcatc 9450
Query: 364 cagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggttg 423
|||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||||
Sbjct: 9449 cagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggttg 9390
Query: 424 ttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggagatc 483
||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct: 9389 ttgagcaggtcggagccgatggcctgccccgccgggccgtagttgtagttgtaggtgatc 9330
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcggccgcggc 543
|||||||| || |||||| ||||||||||||||| ||||||||||||| |||| |||
Sbjct: 9329 tggatgggtccccggccgtagtacttcttgccggcggcgcacggccactccggcttgggc 9270
Query: 544 tcgcagta 551
||||||||
Sbjct: 9269 tcgcagta 9262
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 13120 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 13061
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 13060 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 13001
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 13000 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 12941
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 12940 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 12887
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 13256 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 13197
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 13196 cactccacgccgccgttgatgatgttggtcaccacgccgta 13156
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| || |||||||||| ||| | ||||| |||||||||
Sbjct: 9647 tcgcagtagcgcttgtagaacccgatccggtcggccaccttgtcgtccgcgccgtgcccg 9588
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||||||| |||||||
Sbjct: 9587 cactccacaccgccgttgatgatgttggtgatctcgccgta 9547
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 167 bits (84), Expect = 8e-039
Identities = 207/248 (83%)
Strand = Plus / Minus
Query: 304 ggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatc 363
||||||||||| || |||||||| |||||||||||||||||| | ||| |||||
Sbjct: 30372148 ggcgtccactggccggtgatcaccgcgtggcacgacggcttgggcgactgcggcgtcatc 30372089
Query: 364 cagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggttg 423
|||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||||
Sbjct: 30372088 cagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggttg 30372029
Query: 424 ttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggagatc 483
||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct: 30372028 ttgagcaggtcggagccgatggcctgccccgccgggccgtagttgtagttgtaggtgatc 30371969
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcggccgcggc 543
|||||||| || |||||| ||||||||||||||| ||||||||||||| |||| |||
Sbjct: 30371968 tggatgggtccccggccgtagtacttcttgccggcggcgcacggccactccggcttgggc 30371909
Query: 544 tcgcagta 551
||||||||
Sbjct: 30371908 tcgcagta 30371901
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 30375759 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 30375700
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 30375699 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 30375640
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 30375639 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 30375580
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 30375579 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 30375526
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 30375895 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 30375836
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 30375835 cactccacgccgccgttgatgatgttggtcaccacgccgta 30375795
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| || |||||||||| ||| | ||||| |||||||||
Sbjct: 30372286 tcgcagtagcgcttgtagaacccgatccggtcggccaccttgtcgtccgcgccgtgcccg 30372227
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||||||| |||||||
Sbjct: 30372226 cactccacaccgccgttgatgatgttggtgatctcgccgta 30372186
>gb|AACV01014964.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014964, whole
genome shotgun sequence
Length = 4179
Score = 159 bits (80), Expect = 2e-036
Identities = 206/248 (83%)
Strand = Plus / Plus
Query: 304 ggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatc 363
||||||||||| || |||||||| |||||||||||||||||| | ||| |||||
Sbjct: 1223 ggcgtccactggccggtgatcaccgcgtggcacgacggcttgggcgactgcggcgtcatc 1282
Query: 364 cagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggttg 423
|||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||||
Sbjct: 1283 cagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggttg 1342
Query: 424 ttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggagatc 483
||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct: 1343 ttgagcaggtcggagccgatggcctgccccgccgggccgtagttgtagttgtaggtgatc 1402
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcggccgcggc 543
|||||||| || ||||| ||||||||||||||| ||||||||||||| |||| |||
Sbjct: 1403 tggatgggtccccggccctagtacttcttgccggcggcgcacggccactccggcttgggc 1462
Query: 544 tcgcagta 551
||||||||
Sbjct: 1463 tcgcagta 1470
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| || |||||||||| ||| | ||||| |||||||||
Sbjct: 1085 tcgcagtagcgcttgtagaacccgatccggtcggccaccttgtcgtccgcgccgtgcccg 1144
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||||||| |||||||
Sbjct: 1145 cactccacaccgccgttgatgatgttggtgatctcgccgta 1185
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 159 bits (80), Expect = 2e-036
Identities = 206/248 (83%)
Strand = Plus / Minus
Query: 304 ggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatc 363
||||||||||| || |||||||| |||||||||||||||||| | ||| |||||
Sbjct: 11703137 ggcgtccactggccggtgatcaccgcgtggcacgacggcttgggcgactgcggcgtcatc 11703078
Query: 364 cagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggttg 423
|||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||||
Sbjct: 11703077 cagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggttg 11703018
Query: 424 ttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggagatc 483
||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct: 11703017 ttgagcaggtcggagccgatggcctgccccgccgggccgtagttgtagttgtaggtgatc 11702958
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcggccgcggc 543
|||||||| || ||||| ||||||||||||||| ||||||||||||| |||| |||
Sbjct: 11702957 tggatgggtccccggccctagtacttcttgccggcggcgcacggccactccggcttgggc 11702898
Query: 544 tcgcagta 551
||||||||
Sbjct: 11702897 tcgcagta 11702890
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 11707590 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 11707531
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 11707530 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 11707471
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 11707470 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 11707411
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 11707410 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 11707357
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 11707726 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 11707667
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 11707666 cactccacgccgccgttgatgatgttggtcaccacgccgta 11707626
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| || |||||||||| ||| | ||||| |||||||||
Sbjct: 11703275 tcgcagtagcgcttgtagaacccgatccggtcggccaccttgtcgtccgcgccgtgcccg 11703216
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||||||| |||||||
Sbjct: 11703215 cactccacaccgccgttgatgatgttggtgatctcgccgta 11703175
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 159 bits (80), Expect = 2e-036
Identities = 206/248 (83%)
Strand = Plus / Minus
Query: 304 ggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttcatc 363
||||||||||| || |||||||| |||||||||||||||||| | ||| |||||
Sbjct: 29401874 ggcgtccactggccggtgatcaccgcgtggcacgacggcttgggcgactgcggcgtcatc 29401815
Query: 364 cagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggttg 423
|||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||||
Sbjct: 29401814 cagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggttg 29401755
Query: 424 ttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggagatc 483
||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct: 29401754 ttgagcaggtcggagccgatggcctgccccgccgggccgtagttgtagttgtaggtgatc 29401695
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcggccgcggc 543
|||||||| || ||||| ||||||||||||||| ||||||||||||| |||| |||
Sbjct: 29401694 tggatgggtccccggccctagtacttcttgccggcggcgcacggccactccggcttgggc 29401635
Query: 544 tcgcagta 551
||||||||
Sbjct: 29401634 tcgcagta 29401627
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 29406327 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 29406268
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 29406267 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 29406208
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 29406207 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 29406148
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 29406147 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 29406094
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 29406463 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 29406404
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 29406403 cactccacgccgccgttgatgatgttggtcaccacgccgta 29406363
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| || |||||||||| ||| | ||||| |||||||||
Sbjct: 29402012 tcgcagtagcgcttgtagaacccgatccggtcggccaccttgtcgtccgcgccgtgcccg 29401953
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||||||| |||||||
Sbjct: 29401952 cactccacaccgccgttgatgatgttggtgatctcgccgta 29401912
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
complete sequence
Length = 146303
Score = 157 bits (79), Expect = 8e-036
Identities = 204/245 (83%), Gaps = 3/245 (1%)
Strand = Plus / Minus
Query: 100 ccgctattgaagggcctctggccgtcgcaatcgagattgctcccgtagccgatgcggaag 159
||||| ||||| ||||||||| ||| ||| ||||| ||||||||||||||||||| ||
Sbjct: 96306 ccgctgttgaacggcctctggtcgtagcagtcgaggttgctcccgtagccgatgccgagc 96247
Query: 160 acatcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgc 219
|| ||||||||||||| ||||||||| ||||||| | |||||| ||| | ||| |
Sbjct: 96246 acgtcgcagtagcgctggtagaagccgatccggttcgccacccggtcgtcggggccgaac 96187
Query: 220 ccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcgccccgg 279
|||||||| | ||| |||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 96186 ccgcactccaacccgccgttgatgatgttggtgatcacgccgtaccccggc---acccgc 96130
Query: 280 ccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtggcacgac 339
|||||||| ||||| | | | |||||||||||||||||||||||| |||||||||||
Sbjct: 96129 ccggccgcgatgtcccccgagctcggcgtccactgccccgtgatcacgtcgtggcacgac 96070
Query: 340 ggctt 344
|||||
Sbjct: 96069 ggctt 96065
Score = 149 bits (75), Expect = 2e-033
Identities = 215/261 (82%), Gaps = 3/261 (1%)
Strand = Plus / Minus
Query: 214 ccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcg 273
|||||||||||||| | ||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 87280 ccgtgcccgcactccagcccgccgttgacgatgttggtgatcacgccgtaccccggcgc- 87222
Query: 274 ccccggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtgg 333
||| || ||||| ||| || | || ||||| |||| |||||||||||||| |||||
Sbjct: 87221 --ccgccccgccgcggcgtcggccggcgagggcgcccaccgccccgtgatcacgtcgtgg 87164
Query: 334 cacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatc 393
| |||||||||||| || ||| ||||||||||||||||||| |||||||| || | |
Sbjct: 87163 ctcgacggcttgttcccctgcggcgtcatccagaaccacagcgccgtcttgaacgacacc 87104
Query: 394 acggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgcccc 453
| ||||||||| || |||||||||||| | || |||||||| ||||| || | ||||
Sbjct: 87103 gtcgcgtccgtcgccaccaggtccgggttgctcagcaggtccaccccgatcgccctcccc 87044
Query: 454 gccgggccgtagttgtagttg 474
||||| ||||||||| |||||
Sbjct: 87043 gccggcccgtagttgaagttg 87023
Score = 103 bits (52), Expect = 1e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||||||||||||||| |||||||| || | ||| ||||||| ||| || || ||||
Sbjct: 96050 tcatccagaaccacagcgccgtcttgaacgacaccaccgggtccgacgccaccagctccg 95991
Query: 419 ggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttg 474
||||||| ||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 95990 ggttgttcaggaggtcctcgccgatggcctctcccgccggcccgtagttgtagttg 95935
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 475 aaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgc 534
||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||| |
Sbjct: 86893 aaggagagttggatggggccgcggccgtagtacttgcggccgggggcgcacggccactcc 86834
Query: 535 ggccgcggctcgcagtagtccgacggcgggtt 566
||| |||| ||||||||| |||||||||||
Sbjct: 86833 ggcgagggctggcagtagtcggacggcgggtt 86802
Score = 73.8 bits (37), Expect = 9e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccact 532
|||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 95835 tggatggggccgcggccgaagtacttcttgtccggggcgcacggccact 95787
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 277 cggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtg 332
||||||||||| |||||||| | || || |||||||||||||||| ||||||||
Sbjct: 106915 cggccggccgcgctgtccgcgggagtcggagtccactgccccgtgacgacggcgtg 106860
Score = 44.1 bits (22), Expect = 0.081
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 141 cccgtagccgatgcggaagacatcgcagtagcgcttgtagaa 182
||||||||||| || || || ||||||||||||||||||||
Sbjct: 107042 cccgtagccgacgccgagcacgtcgcagtagcgcttgtagaa 107001
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 510 cttgccgggcgcgcacggcca 530
|||||||||||||||||||||
Sbjct: 106480 cttgccgggcgcgcacggcca 106460
>gb|AACV01012113.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012113, whole
genome shotgun sequence
Length = 69919
Score = 157 bits (79), Expect = 8e-036
Identities = 204/245 (83%), Gaps = 3/245 (1%)
Strand = Plus / Minus
Query: 100 ccgctattgaagggcctctggccgtcgcaatcgagattgctcccgtagccgatgcggaag 159
||||| ||||| ||||||||| ||| ||| ||||| ||||||||||||||||||| ||
Sbjct: 15701 ccgctgttgaacggcctctggtcgtagcagtcgaggttgctcccgtagccgatgccgagc 15642
Query: 160 acatcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgc 219
|| ||||||||||||| ||||||||| ||||||| | |||||| ||| | ||| |
Sbjct: 15641 acgtcgcagtagcgctggtagaagccgatccggttcgccacccggtcgtcggggccgaac 15582
Query: 220 ccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcgccccgg 279
|||||||| | ||| |||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 15581 ccgcactccaacccgccgttgatgatgttggtgatcacgccgtaccccggc---acccgc 15525
Query: 280 ccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtggcacgac 339
|||||||| ||||| | | | |||||||||||||||||||||||| |||||||||||
Sbjct: 15524 ccggccgcgatgtcccccgagctcggcgtccactgccccgtgatcacgtcgtggcacgac 15465
Query: 340 ggctt 344
|||||
Sbjct: 15464 ggctt 15460
Score = 149 bits (75), Expect = 2e-033
Identities = 215/261 (82%), Gaps = 3/261 (1%)
Strand = Plus / Minus
Query: 214 ccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcg 273
|||||||||||||| | ||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 6669 ccgtgcccgcactccagcccgccgttgacgatgttggtgatcacgccgtaccccggcgc- 6611
Query: 274 ccccggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtgg 333
||| || ||||| ||| || | || ||||| |||| |||||||||||||| |||||
Sbjct: 6610 --ccgccccgccgcggcgtcggccggcgagggcgcccaccgccccgtgatcacgtcgtgg 6553
Query: 334 cacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatc 393
| |||||||||||| || ||| ||||||||||||||||||| |||||||| || | |
Sbjct: 6552 ctcgacggcttgttcccctgcggcgtcatccagaaccacagcgccgtcttgaacgacacc 6493
Query: 394 acggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgcccc 453
| ||||||||| || |||||||||||| | || |||||||| ||||| || | ||||
Sbjct: 6492 gtcgcgtccgtcgccaccaggtccgggttgctcagcaggtccaccccgatcgccctcccc 6433
Query: 454 gccgggccgtagttgtagttg 474
||||| ||||||||| |||||
Sbjct: 6432 gccggcccgtagttgaagttg 6412
Score = 103 bits (52), Expect = 1e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||||||||||||||| |||||||| || | ||| ||||||| ||| || || ||||
Sbjct: 15445 tcatccagaaccacagcgccgtcttgaacgacaccaccgggtccgacgccaccagctccg 15386
Query: 419 ggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttg 474
||||||| ||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 15385 ggttgttcaggaggtcctcgccgatggcctctcccgccggcccgtagttgtagttg 15330
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 475 aaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgc 534
||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||| |
Sbjct: 6282 aaggagagttggatggggccgcggccgtagtacttgcggccgggggcgcacggccactcc 6223
Query: 535 ggccgcggctcgcagtagtccgacggcgggtt 566
||| |||| ||||||||| |||||||||||
Sbjct: 6222 ggcgagggctggcagtagtcggacggcgggtt 6191
Score = 73.8 bits (37), Expect = 9e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccact 532
|||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 15230 tggatggggccgcggccgaagtacttcttgtccggggcgcacggccact 15182
Score = 44.1 bits (22), Expect = 0.081
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 141 cccgtagccgatgcggaagacatcgcagtagcgcttgtagaa 182
||||||||||| || || || ||||||||||||||||||||
Sbjct: 26447 cccgtagccgacgccgagcacgtcgcagtagcgcttgtagaa 26406
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 510 cttgccgggcgcgcacggcca 530
|||||||||||||||||||||
Sbjct: 25886 cttgccgggcgcgcacggcca 25866
>ref|NT_107212.1| Oryza sativa (japonica cultivar-group)
Length = 2712182
Score = 157 bits (79), Expect = 8e-036
Identities = 204/245 (83%), Gaps = 3/245 (1%)
Strand = Plus / Minus
Query: 100 ccgctattgaagggcctctggccgtcgcaatcgagattgctcccgtagccgatgcggaag 159
||||| ||||| ||||||||| ||| ||| ||||| ||||||||||||||||||| ||
Sbjct: 597634 ccgctgttgaacggcctctggtcgtagcagtcgaggttgctcccgtagccgatgccgagc 597575
Query: 160 acatcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgc 219
|| ||||||||||||| ||||||||| ||||||| | |||||| ||| | ||| |
Sbjct: 597574 acgtcgcagtagcgctggtagaagccgatccggttcgccacccggtcgtcggggccgaac 597515
Query: 220 ccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcgccccgg 279
|||||||| | ||| |||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 597514 ccgcactccaacccgccgttgatgatgttggtgatcacgccgtaccccggc---acccgc 597458
Query: 280 ccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtggcacgac 339
|||||||| ||||| | | | |||||||||||||||||||||||| |||||||||||
Sbjct: 597457 ccggccgcgatgtcccccgagctcggcgtccactgccccgtgatcacgtcgtggcacgac 597398
Query: 340 ggctt 344
|||||
Sbjct: 597397 ggctt 597393
Score = 149 bits (75), Expect = 2e-033
Identities = 215/261 (82%), Gaps = 3/261 (1%)
Strand = Plus / Minus
Query: 214 ccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcg 273
|||||||||||||| | ||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 588608 ccgtgcccgcactccagcccgccgttgacgatgttggtgatcacgccgtaccccggcgc- 588550
Query: 274 ccccggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtgg 333
||| || ||||| ||| || | || ||||| |||| |||||||||||||| |||||
Sbjct: 588549 --ccgccccgccgcggcgtcggccggcgagggcgcccaccgccccgtgatcacgtcgtgg 588492
Query: 334 cacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatc 393
| |||||||||||| || ||| ||||||||||||||||||| |||||||| || | |
Sbjct: 588491 ctcgacggcttgttcccctgcggcgtcatccagaaccacagcgccgtcttgaacgacacc 588432
Query: 394 acggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgcccc 453
| ||||||||| || |||||||||||| | || |||||||| ||||| || | ||||
Sbjct: 588431 gtcgcgtccgtcgccaccaggtccgggttgctcagcaggtccaccccgatcgccctcccc 588372
Query: 454 gccgggccgtagttgtagttg 474
||||| ||||||||| |||||
Sbjct: 588371 gccggcccgtagttgaagttg 588351
Score = 103 bits (52), Expect = 1e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||||||||||||||| |||||||| || | ||| ||||||| ||| || || ||||
Sbjct: 597378 tcatccagaaccacagcgccgtcttgaacgacaccaccgggtccgacgccaccagctccg 597319
Query: 419 ggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttg 474
||||||| ||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 597318 ggttgttcaggaggtcctcgccgatggcctctcccgccggcccgtagttgtagttg 597263
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 475 aaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgc 534
||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||| |
Sbjct: 588221 aaggagagttggatggggccgcggccgtagtacttgcggccgggggcgcacggccactcc 588162
Query: 535 ggccgcggctcgcagtagtccgacggcgggtt 566
||| |||| ||||||||| |||||||||||
Sbjct: 588161 ggcgagggctggcagtagtcggacggcgggtt 588130
Score = 73.8 bits (37), Expect = 9e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccact 532
|||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 597163 tggatggggccgcggccgaagtacttcttgtccggggcgcacggccact 597115
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 277 cggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtg 332
||||||||||| |||||||| | || || |||||||||||||||| ||||||||
Sbjct: 608243 cggccggccgcgctgtccgcgggagtcggagtccactgccccgtgacgacggcgtg 608188
Score = 44.1 bits (22), Expect = 0.081
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 141 cccgtagccgatgcggaagacatcgcagtagcgcttgtagaa 182
||||||||||| || || || ||||||||||||||||||||
Sbjct: 608370 cccgtagccgacgccgagcacgtcgcagtagcgcttgtagaa 608329
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 510 cttgccgggcgcgcacggcca 530
|||||||||||||||||||||
Sbjct: 607808 cttgccgggcgcgcacggcca 607788
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 157 bits (79), Expect = 8e-036
Identities = 204/245 (83%), Gaps = 3/245 (1%)
Strand = Plus / Minus
Query: 100 ccgctattgaagggcctctggccgtcgcaatcgagattgctcccgtagccgatgcggaag 159
||||| ||||| ||||||||| ||| ||| ||||| ||||||||||||||||||| ||
Sbjct: 1704124 ccgctgttgaacggcctctggtcgtagcagtcgaggttgctcccgtagccgatgccgagc 1704065
Query: 160 acatcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgc 219
|| ||||||||||||| ||||||||| ||||||| | |||||| ||| | ||| |
Sbjct: 1704064 acgtcgcagtagcgctggtagaagccgatccggttcgccacccggtcgtcggggccgaac 1704005
Query: 220 ccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcgccccgg 279
|||||||| | ||| |||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 1704004 ccgcactccaacccgccgttgatgatgttggtgatcacgccgtaccccggc---acccgc 1703948
Query: 280 ccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtggcacgac 339
|||||||| ||||| | | | |||||||||||||||||||||||| |||||||||||
Sbjct: 1703947 ccggccgcgatgtcccccgagctcggcgtccactgccccgtgatcacgtcgtggcacgac 1703888
Query: 340 ggctt 344
|||||
Sbjct: 1703887 ggctt 1703883
Score = 149 bits (75), Expect = 2e-033
Identities = 215/261 (82%), Gaps = 3/261 (1%)
Strand = Plus / Minus
Query: 214 ccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcg 273
|||||||||||||| | ||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 1695092 ccgtgcccgcactccagcccgccgttgacgatgttggtgatcacgccgtaccccggcgc- 1695034
Query: 274 ccccggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtgg 333
||| || ||||| ||| || | || ||||| |||| |||||||||||||| |||||
Sbjct: 1695033 --ccgccccgccgcggcgtcggccggcgagggcgcccaccgccccgtgatcacgtcgtgg 1694976
Query: 334 cacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatc 393
| |||||||||||| || ||| ||||||||||||||||||| |||||||| || | |
Sbjct: 1694975 ctcgacggcttgttcccctgcggcgtcatccagaaccacagcgccgtcttgaacgacacc 1694916
Query: 394 acggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgcccc 453
| ||||||||| || |||||||||||| | || |||||||| ||||| || | ||||
Sbjct: 1694915 gtcgcgtccgtcgccaccaggtccgggttgctcagcaggtccaccccgatcgccctcccc 1694856
Query: 454 gccgggccgtagttgtagttg 474
||||| ||||||||| |||||
Sbjct: 1694855 gccggcccgtagttgaagttg 1694835
Score = 103 bits (52), Expect = 1e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||||||||||||||| |||||||| || | ||| ||||||| ||| || || ||||
Sbjct: 1703868 tcatccagaaccacagcgccgtcttgaacgacaccaccgggtccgacgccaccagctccg 1703809
Query: 419 ggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttg 474
||||||| ||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 1703808 ggttgttcaggaggtcctcgccgatggcctctcccgccggcccgtagttgtagttg 1703753
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 475 aaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgc 534
||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||| |
Sbjct: 1694705 aaggagagttggatggggccgcggccgtagtacttgcggccgggggcgcacggccactcc 1694646
Query: 535 ggccgcggctcgcagtagtccgacggcgggtt 566
||| |||| ||||||||| |||||||||||
Sbjct: 1694645 ggcgagggctggcagtagtcggacggcgggtt 1694614
Score = 73.8 bits (37), Expect = 9e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccact 532
|||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 1703653 tggatggggccgcggccgaagtacttcttgtccggggcgcacggccact 1703605
Score = 44.1 bits (22), Expect = 0.081
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 141 cccgtagccgatgcggaagacatcgcagtagcgcttgtagaa 182
||||||||||| || || || ||||||||||||||||||||
Sbjct: 1714870 cccgtagccgacgccgagcacgtcgcagtagcgcttgtagaa 1714829
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 510 cttgccgggcgcgcacggcca 530
|||||||||||||||||||||
Sbjct: 1714309 cttgccgggcgcgcacggcca 1714289
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 157 bits (79), Expect = 8e-036
Identities = 204/245 (83%), Gaps = 3/245 (1%)
Strand = Plus / Minus
Query: 100 ccgctattgaagggcctctggccgtcgcaatcgagattgctcccgtagccgatgcggaag 159
||||| ||||| ||||||||| ||| ||| ||||| ||||||||||||||||||| ||
Sbjct: 19004437 ccgctgttgaacggcctctggtcgtagcagtcgaggttgctcccgtagccgatgccgagc 19004378
Query: 160 acatcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgc 219
|| ||||||||||||| ||||||||| ||||||| | |||||| ||| | ||| |
Sbjct: 19004377 acgtcgcagtagcgctggtagaagccgatccggttcgccacccggtcgtcggggccgaac 19004318
Query: 220 ccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcgccccgg 279
|||||||| | ||| |||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 19004317 ccgcactccaacccgccgttgatgatgttggtgatcacgccgtaccccggc---acccgc 19004261
Query: 280 ccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtggcacgac 339
|||||||| ||||| | | | |||||||||||||||||||||||| |||||||||||
Sbjct: 19004260 ccggccgcgatgtcccccgagctcggcgtccactgccccgtgatcacgtcgtggcacgac 19004201
Query: 340 ggctt 344
|||||
Sbjct: 19004200 ggctt 19004196
Score = 149 bits (75), Expect = 2e-033
Identities = 215/261 (82%), Gaps = 3/261 (1%)
Strand = Plus / Minus
Query: 214 ccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcg 273
|||||||||||||| | ||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 18995405 ccgtgcccgcactccagcccgccgttgacgatgttggtgatcacgccgtaccccggcgc- 18995347
Query: 274 ccccggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtgg 333
||| || ||||| ||| || | || ||||| |||| |||||||||||||| |||||
Sbjct: 18995346 --ccgccccgccgcggcgtcggccggcgagggcgcccaccgccccgtgatcacgtcgtgg 18995289
Query: 334 cacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatc 393
| |||||||||||| || ||| ||||||||||||||||||| |||||||| || | |
Sbjct: 18995288 ctcgacggcttgttcccctgcggcgtcatccagaaccacagcgccgtcttgaacgacacc 18995229
Query: 394 acggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgcccc 453
| ||||||||| || |||||||||||| | || |||||||| ||||| || | ||||
Sbjct: 18995228 gtcgcgtccgtcgccaccaggtccgggttgctcagcaggtccaccccgatcgccctcccc 18995169
Query: 454 gccgggccgtagttgtagttg 474
||||| ||||||||| |||||
Sbjct: 18995168 gccggcccgtagttgaagttg 18995148
Score = 103 bits (52), Expect = 1e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||||||||||||||| |||||||| || | ||| ||||||| ||| || || ||||
Sbjct: 19004181 tcatccagaaccacagcgccgtcttgaacgacaccaccgggtccgacgccaccagctccg 19004122
Query: 419 ggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttg 474
||||||| ||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 19004121 ggttgttcaggaggtcctcgccgatggcctctcccgccggcccgtagttgtagttg 19004066
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 475 aaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgc 534
||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||| |
Sbjct: 18995018 aaggagagttggatggggccgcggccgtagtacttgcggccgggggcgcacggccactcc 18994959
Query: 535 ggccgcggctcgcagtagtccgacggcgggtt 566
||| |||| ||||||||| |||||||||||
Sbjct: 18994958 ggcgagggctggcagtagtcggacggcgggtt 18994927
Score = 73.8 bits (37), Expect = 9e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccact 532
|||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 19003966 tggatggggccgcggccgaagtacttcttgtccggggcgcacggccact 19003918
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaa 386
||||||||||||||||||| ||||||||
Sbjct: 2176247 tcatccagaaccacagcgccgtcttgaa 2176220
Score = 44.1 bits (22), Expect = 0.081
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 141 cccgtagccgatgcggaagacatcgcagtagcgcttgtagaa 182
||||||||||| || || || ||||||||||||||||||||
Sbjct: 19015183 cccgtagccgacgccgagcacgtcgcagtagcgcttgtagaa 19015142
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 510 cttgccgggcgcgcacggcca 530
|||||||||||||||||||||
Sbjct: 19014622 cttgccgggcgcgcacggcca 19014602
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 157 bits (79), Expect = 8e-036
Identities = 204/245 (83%), Gaps = 3/245 (1%)
Strand = Plus / Minus
Query: 100 ccgctattgaagggcctctggccgtcgcaatcgagattgctcccgtagccgatgcggaag 159
||||| ||||| ||||||||| ||| ||| ||||| ||||||||||||||||||| ||
Sbjct: 19292231 ccgctgttgaacggcctctggtcgtagcagtcgaggttgctcccgtagccgatgccgagc 19292172
Query: 160 acatcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgc 219
|| ||||||||||||| ||||||||| ||||||| | |||||| ||| | ||| |
Sbjct: 19292171 acgtcgcagtagcgctggtagaagccgatccggttcgccacccggtcgtcggggccgaac 19292112
Query: 220 ccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcgccccgg 279
|||||||| | ||| |||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 19292111 ccgcactccaacccgccgttgatgatgttggtgatcacgccgtaccccggc---acccgc 19292055
Query: 280 ccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtggcacgac 339
|||||||| ||||| | | | |||||||||||||||||||||||| |||||||||||
Sbjct: 19292054 ccggccgcgatgtcccccgagctcggcgtccactgccccgtgatcacgtcgtggcacgac 19291995
Query: 340 ggctt 344
|||||
Sbjct: 19291994 ggctt 19291990
Score = 149 bits (75), Expect = 2e-033
Identities = 215/261 (82%), Gaps = 3/261 (1%)
Strand = Plus / Minus
Query: 214 ccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcg 273
|||||||||||||| | ||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 19283205 ccgtgcccgcactccagcccgccgttgacgatgttggtgatcacgccgtaccccggcgc- 19283147
Query: 274 ccccggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtgg 333
||| || ||||| ||| || | || ||||| |||| |||||||||||||| |||||
Sbjct: 19283146 --ccgccccgccgcggcgtcggccggcgagggcgcccaccgccccgtgatcacgtcgtgg 19283089
Query: 334 cacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatc 393
| |||||||||||| || ||| ||||||||||||||||||| |||||||| || | |
Sbjct: 19283088 ctcgacggcttgttcccctgcggcgtcatccagaaccacagcgccgtcttgaacgacacc 19283029
Query: 394 acggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgcccc 453
| ||||||||| || |||||||||||| | || |||||||| ||||| || | ||||
Sbjct: 19283028 gtcgcgtccgtcgccaccaggtccgggttgctcagcaggtccaccccgatcgccctcccc 19282969
Query: 454 gccgggccgtagttgtagttg 474
||||| ||||||||| |||||
Sbjct: 19282968 gccggcccgtagttgaagttg 19282948
Score = 103 bits (52), Expect = 1e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||||||||||||||| |||||||| || | ||| ||||||| ||| || || ||||
Sbjct: 19291975 tcatccagaaccacagcgccgtcttgaacgacaccaccgggtccgacgccaccagctccg 19291916
Query: 419 ggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttg 474
||||||| ||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 19291915 ggttgttcaggaggtcctcgccgatggcctctcccgccggcccgtagttgtagttg 19291860
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 475 aaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgc 534
||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||| |
Sbjct: 19282818 aaggagagttggatggggccgcggccgtagtacttgcggccgggggcgcacggccactcc 19282759
Query: 535 ggccgcggctcgcagtagtccgacggcgggtt 566
||| |||| ||||||||| |||||||||||
Sbjct: 19282758 ggcgagggctggcagtagtcggacggcgggtt 19282727
Score = 73.8 bits (37), Expect = 9e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 484 tggatggggccgcggccgaagtacttcttgccgggcgcgcacggccact 532
|||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 19291760 tggatggggccgcggccgaagtacttcttgtccggggcgcacggccact 19291712
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 277 cggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtg 332
||||||||||| |||||||| | || || |||||||||||||||| ||||||||
Sbjct: 19302840 cggccggccgcgctgtccgcgggagtcggagtccactgccccgtgacgacggcgtg 19302785
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaa 386
||||||||||||||||||| ||||||||
Sbjct: 2157800 tcatccagaaccacagcgccgtcttgaa 2157773
Score = 44.1 bits (22), Expect = 0.081
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 141 cccgtagccgatgcggaagacatcgcagtagcgcttgtagaa 182
||||||||||| || || || ||||||||||||||||||||
Sbjct: 19302967 cccgtagccgacgccgagcacgtcgcagtagcgcttgtagaa 19302926
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 510 cttgccgggcgcgcacggcca 530
|||||||||||||||||||||
Sbjct: 19302405 cttgccgggcgcgcacggcca 19302385
>gb|CB672878.1|CB672878 OSJNEe07C10.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe07C10 3', mRNA sequence
Length = 770
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Plus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 298 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 357
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 358 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 417
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 418 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 477
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 478 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 531
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 162 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 221
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 222 cactccacgccgccgttgatgatgttggtcaccacgccgta 262
>gb|CB684719.1|CB684719 OSJNEf14I06.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14I06 5', mRNA sequence
Length = 839
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 463 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 404
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 403 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 344
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 343 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 284
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 283 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 230
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 599 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 540
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 539 cactccacgccgccgttgatgatgttggtcaccacgccgta 499
>gb|CB684720.1|CB684720 OSJNEf14I06.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14I06 3', mRNA sequence
Length = 756
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Plus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 385 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 444
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 445 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 504
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 505 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 564
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 565 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 618
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 249 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 308
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 309 cactccacgccgccgttgatgatgttggtcaccacgccgta 349
>dbj|D16221.1|RICCHT1 Oryza sativa (japonica cultivar-group) Cht-1 gene for endochitinase,
complete cds
Length = 2739
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 2089 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 2030
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 2029 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 1970
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1969 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 1910
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 1909 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 1856
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 2225 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 2166
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 2165 cactccacgccgccgttgatgatgttggtcaccacgccgta 2125
>dbj|AK061042.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-D05, full
insert sequence
Length = 1217
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 827 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 768
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 767 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 708
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 707 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 648
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 647 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 594
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 963 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 904
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 903 cactccacgccgccgttgatgatgttggtcaccacgccgta 863
>dbj|AK099339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028I21, full
insert sequence
Length = 1174
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 805 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 746
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 745 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 686
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 685 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 626
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 625 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 572
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 941 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 882
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 881 cactccacgccgccgttgatgatgttggtcaccacgccgta 841
>dbj|AK104020.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-C04, full
insert sequence
Length = 1136
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 824 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 765
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 764 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 705
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 704 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 645
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 644 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 591
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 960 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 901
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 900 cactccacgccgccgttgatgatgttggtcaccacgccgta 860
>dbj|AK105798.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A08, full
insert sequence
Length = 1141
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 829 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 770
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 769 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 710
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 709 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 650
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 649 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 596
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 965 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 906
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 905 cactccacgccgccgttgatgatgttggtcaccacgccgta 865
>gb|AACV01014965.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014965, whole
genome shotgun sequence
Length = 41039
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 3181 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 3122
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 3121 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 3062
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 3061 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 3002
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 3001 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 2948
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 3317 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 3258
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 3257 cactccacgccgccgttgatgatgttggtcaccacgccgta 3217
>emb|X56063.1|OSENDO O.sativa mRNA for endochitinase
Length = 1160
Score = 155 bits (78), Expect = 3e-035
Identities = 195/234 (83%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 724 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 665
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 664 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 605
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 604 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 545
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||||||||| || |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 544 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactgcg 491
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 860 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 801
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 800 cactccacgccgccgttgatgatgttggtcaccacgccgta 760
>gb|CA756422.1|CA756422 BR030042000_PLATE_B01_2_010.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030042000_PLATE_B01_2_010.ab1 similar to chitinase (EC
3.2.1.14) - rice, mRNA sequence
Length = 605
Score = 149 bits (75), Expect = 2e-033
Identities = 215/261 (82%), Gaps = 3/261 (1%)
Strand = Plus / Minus
Query: 214 ccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcg 273
|||||||||||||| | ||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 298 ccgtgcccgcactccagcccgccgttgacgatgttggtgatcacgccgtaccccggcgc- 240
Query: 274 ccccggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtgg 333
||| || ||||| ||| || | || ||||| |||| |||||||||||||| |||||
Sbjct: 239 --ccgccccgccgcggcgtcggccggcgagggcgcccaccgccccgtgatcacgtcgtgg 182
Query: 334 cacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatc 393
| |||||||||||| || ||| ||||||||||||||||||| |||||||| || | |
Sbjct: 181 ctcgacggcttgttcccctgcggcgtcatccagaaccacagcgccgtcttgaacgacacc 122
Query: 394 acggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgcccc 453
| ||||||||| || |||||||||||| | || |||||||| ||||| || | ||||
Sbjct: 121 gtcgcgtccgtcgccaccaggtccgggttgctcagcaggtccaccccgatcgccctcccc 62
Query: 454 gccgggccgtagttgtagttg 474
||||| ||||||||| |||||
Sbjct: 61 gccggcccgtagttgaagttg 41
>dbj|D16222.1|RICCHT2 Oryza sativa (japonica cultivar-group) Cht-2 gene for endochitinase,
complete cds
Length = 2986
Score = 149 bits (75), Expect = 2e-033
Identities = 215/261 (82%), Gaps = 3/261 (1%)
Strand = Plus / Minus
Query: 214 ccgtgcccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcg 273
|||||||||||||| | ||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 2325 ccgtgcccgcactccagcccgccgttgacgatgttggtgatcacgccgtaccccggcgc- 2267
Query: 274 ccccggccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtgg 333
||| || ||||| ||| || | || ||||| |||| |||||||||||||| |||||
Sbjct: 2266 --ccgccccgccgcggcgtcggccggcgagggcgcccaccgccccgtgatcacgtcgtgg 2209
Query: 334 cacgacggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaaggatatc 393
| |||||||||||| || ||| ||||||||||||||||||| |||||||| || | |
Sbjct: 2208 ctcgacggcttgttcccctgcggcgtcatccagaaccacagcgccgtcttgaacgacacc 2149
Query: 394 acggggtccgtcgcgacgaggtccgggttgttgaggaggtccacgccgatggctcgcccc 453
| ||||||||| || |||||||||||| | || |||||||| ||||| || | ||||
Sbjct: 2148 gtcgcgtccgtcgccaccaggtccgggttgctcagcaggtccaccccgatcgccctcccc 2089
Query: 454 gccgggccgtagttgtagttg 474
||||| ||||||||| |||||
Sbjct: 2088 gccggcccgtagttgaagttg 2068
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 475 aaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgc 534
||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||| |
Sbjct: 1937 aaggagagttggatggggccgcggccgtagtacttgcggccgggggcgcacggccactcc 1878
Query: 535 ggccgcggctcgcagtagtccgacggcgggtt 566
||| |||| ||||||||| |||||||||||
Sbjct: 1877 ggcgagggctggcagtagtcggacggcgggtt 1846
>gb|AY378172.1| Oryza sativa (japonica cultivar-group) OsmChiI-34 mRNA, partial cds
Length = 894
Score = 139 bits (70), Expect = 2e-030
Identities = 205/250 (82%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| | |||
Sbjct: 709 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggggtca 650
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||| ||| | || ||||| ||| || ||||||||||
Sbjct: 649 tccagaaccagaacgccgtcttgagggagacggtggcgtccgacgccaccaggtccgggt 590
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| ||||||||||||||||| |||||||| ||| ||
Sbjct: 589 tgctcagcaggttggagccgatggcctgccccgccgggccgtagctgtagttgtaggtga 530
Query: 482 tctggatggggccgcggccgaagtacttcttgccgggcgcgcacggccactgcggccgcg 541
|||||||||| || |||||| ||||||||||||||| ||||||||||||| |||| |
Sbjct: 529 tctggatgggtccccggccgtagtacttcttgccggcggcgcacggccactccggcttgg 470
Query: 542 gctcgcagta 551
||||||||||
Sbjct: 469 gctcgcagta 460
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 845 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 786
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 785 cactccacgccgccgttgatgatgttggtcaccacgccgta 745
>gb|C98575.1|C98575 C98575 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0422_6Z, mRNA sequence
Length = 614
Score = 131 bits (66), Expect = 4e-028
Identities = 90/98 (91%)
Strand = Plus / Minus
Query: 438 gccgatggctcgccccgccgggccgtagttgtagttgaaggagatctggatggggccgcg 497
||||||||| |||||||||||||||||||||||||| |||||||||||||||| || ||
Sbjct: 109 gccgatggcctgccccgccgggccgtagttgtagttgtaggagatctggatgggtccccg 50
Query: 498 gccgaagtacttcttgccgggcgcgcacggccactgcg 535
|||| ||||||||||||||| ||||||||||||||||
Sbjct: 49 gccgtagtacttcttgccggcggcgcacggccactgcg 12
Score = 67.9 bits (34), Expect = 6e-009
Identities = 86/102 (84%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 383 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 324
Query: 223 cactcgatcccaccgttgat-gatgttggtgatcacgccgta 263
||||| | || |||||||| ||||||||| | |||||||||
Sbjct: 323 cactccacgccgccgttgatggatgttggtcaccacgccgta 282
Score = 42.1 bits (21), Expect = 0.32
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgt-ggcacgacgg 341
|||||||||||||||| || ||||| |||| ||||||||||
Sbjct: 246 tgggcgtccactgccctgtcatcaccgcgtgggcacgacgg 206
>gb|CF323069.1|CF323069 HDN--02-N11.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--02-N11, mRNA sequence
Length = 593
Score = 131 bits (66), Expect = 4e-028
Identities = 177/214 (82%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 221 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 162
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 161 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 102
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 101 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 42
Query: 482 tctggatggggccgcggccgaagtacttcttgcc 515
|||||||||| || |||||| |||||||||||||
Sbjct: 41 tctggatgggtccccggccgtagtacttcttgcc 8
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 357 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 298
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 297 cactccacgccgccgttgatgatgttggtcaccacgccgta 257
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete
sequence
Length = 153247
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Minus
Query: 409 acgaggtccgggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttg 468
||||||||||||| | ||| ||||| |||||||||| |||||||||| |||||||||
Sbjct: 95173 acgaggtccgggtcgccgagcaggtcggcgccgatggcctgccccgccggcccgtagttg 95114
Query: 469 tagttgaaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggc 528
||||| |||||| ||||||||| || |||||| ||||||||||||||| |||||||||
Sbjct: 95113 aagttgtaggagagctggatgggaccccggccgtagtacttcttgccggcggcgcacggc 95054
Query: 529 cactgcggccgcggctcgcagtagtccg 556
||||||| | | ||| |||||||||||
Sbjct: 95053 cactgcgcgctctgctggcagtagtccg 95026
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
||||||||||||||||||||||| |||||||||| ||| || |||| || || |||
Sbjct: 95416 tcgcagtagcgcttgtagaagccgatccggtcggcgacgcgatcgtcctcgccatggccg 95357
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | ||| |||||||||||||||||||| ||||||||
Sbjct: 95356 cactccagcccgccgttgatgatgttggtgatgacgccgta 95316
>gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genomic sequence, complete
sequence
Length = 115326
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Minus
Query: 409 acgaggtccgggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttg 468
||||||||||||| | ||| ||||| |||||||||| |||||||||| |||||||||
Sbjct: 36524 acgaggtccgggtcgccgagcaggtcggcgccgatggcctgccccgccggcccgtagttg 36465
Query: 469 tagttgaaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggc 528
||||| |||||| ||||||||| || |||||| ||||||||||||||| |||||||||
Sbjct: 36464 aagttgtaggagagctggatgggaccccggccgtagtacttcttgccggcggcgcacggc 36405
Query: 529 cactgcggccgcggctcgcagtagtccg 556
||||||| | | ||| |||||||||||
Sbjct: 36404 cactgcgcgctctgctggcagtagtccg 36377
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
||||||||||||||||||||||| |||||||||| ||| || |||| || || |||
Sbjct: 36767 tcgcagtagcgcttgtagaagccgatccggtcggcgacgcgatcgtcctcgccatggccg 36708
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | ||| |||||||||||||||||||| ||||||||
Sbjct: 36707 cactccagcccgccgttgatgatgttggtgatgacgccgta 36667
>gb|AACV01006925.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006925, whole
genome shotgun sequence
Length = 31428
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Plus
Query: 409 acgaggtccgggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttg 468
||||||||||||| | ||| ||||| |||||||||| |||||||||| |||||||||
Sbjct: 23220 acgaggtccgggtcgccgagcaggtcggcgccgatggcctgccccgccggcccgtagttg 23279
Query: 469 tagttgaaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggc 528
||||| |||||| ||||||||| || |||||| ||||||||||||||| |||||||||
Sbjct: 23280 aagttgtaggagagctggatgggaccccggccgtagtacttcttgccggcggcgcacggc 23339
Query: 529 cactgcggccgcggctcgcagtagtccg 556
||||||| | | ||| |||||||||||
Sbjct: 23340 cactgcgcgctctgctggcagtagtccg 23367
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
||||||||||||||||||||||| |||||||||| ||| || |||| || || |||
Sbjct: 22977 tcgcagtagcgcttgtagaagccgatccggtcggcgacgcgatcgtcctcgccatggccg 23036
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | ||| |||||||||||||||||||| ||||||||
Sbjct: 23037 cactccagcccgccgttgatgatgttggtgatgacgccgta 23077
>ref|XM_468715.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 981
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Minus
Query: 409 acgaggtccgggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttg 468
||||||||||||| | ||| ||||| |||||||||| |||||||||| |||||||||
Sbjct: 674 acgaggtccgggtcgccgagcaggtcggcgccgatggcctgccccgccggcccgtagttg 615
Query: 469 tagttgaaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggc 528
||||| |||||| ||||||||| || |||||| ||||||||||||||| |||||||||
Sbjct: 614 aagttgtaggagagctggatgggaccccggccgtagtacttcttgccggcggcgcacggc 555
Query: 529 cactgcggccgcggctcgcagtagtccg 556
||||||| | | ||| |||||||||||
Sbjct: 554 cactgcgcgctctgctggcagtagtccg 527
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
||||||||||||||||||||||| |||||||||| ||| || |||| || || |||
Sbjct: 917 tcgcagtagcgcttgtagaagccgatccggtcggcgacgcgatcgtcctcgccatggccg 858
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | ||| |||||||||||||||||||| ||||||||
Sbjct: 857 cactccagcccgccgttgatgatgttggtgatgacgccgta 817
>ref|NT_079921.2| Oryza sativa (japonica cultivar-group)
Length = 1595909
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Minus
Query: 409 acgaggtccgggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttg 468
||||||||||||| | ||| ||||| |||||||||| |||||||||| |||||||||
Sbjct: 683517 acgaggtccgggtcgccgagcaggtcggcgccgatggcctgccccgccggcccgtagttg 683458
Query: 469 tagttgaaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggc 528
||||| |||||| ||||||||| || |||||| ||||||||||||||| |||||||||
Sbjct: 683457 aagttgtaggagagctggatgggaccccggccgtagtacttcttgccggcggcgcacggc 683398
Query: 529 cactgcggccgcggctcgcagtagtccg 556
||||||| | | ||| |||||||||||
Sbjct: 683397 cactgcgcgctctgctggcagtagtccg 683370
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
||||||||||||||||||||||| |||||||||| ||| || |||| || || |||
Sbjct: 683760 tcgcagtagcgcttgtagaagccgatccggtcggcgacgcgatcgtcctcgccatggccg 683701
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | ||| |||||||||||||||||||| ||||||||
Sbjct: 683700 cactccagcccgccgttgatgatgttggtgatgacgccgta 683660
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Minus
Query: 409 acgaggtccgggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttg 468
||||||||||||| | ||| ||||| |||||||||| |||||||||| |||||||||
Sbjct: 3886310 acgaggtccgggtcgccgagcaggtcggcgccgatggcctgccccgccggcccgtagttg 3886251
Query: 469 tagttgaaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggc 528
||||| |||||| ||||||||| || |||||| ||||||||||||||| |||||||||
Sbjct: 3886250 aagttgtaggagagctggatgggaccccggccgtagtacttcttgccggcggcgcacggc 3886191
Query: 529 cactgcggccgcggctcgcagtagtccg 556
||||||| | | ||| |||||||||||
Sbjct: 3886190 cactgcgcgctctgctggcagtagtccg 3886163
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
||||||||||||||||||||||| |||||||||| ||| || |||| || || |||
Sbjct: 3886553 tcgcagtagcgcttgtagaagccgatccggtcggcgacgcgatcgtcctcgccatggccg 3886494
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | ||| |||||||||||||||||||| ||||||||
Sbjct: 3886493 cactccagcccgccgttgatgatgttggtgatgacgccgta 3886453
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Minus
Query: 409 acgaggtccgggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttg 468
||||||||||||| | ||| ||||| |||||||||| |||||||||| |||||||||
Sbjct: 17937017 acgaggtccgggtcgccgagcaggtcggcgccgatggcctgccccgccggcccgtagttg 17936958
Query: 469 tagttgaaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggc 528
||||| |||||| ||||||||| || |||||| ||||||||||||||| |||||||||
Sbjct: 17936957 aagttgtaggagagctggatgggaccccggccgtagtacttcttgccggcggcgcacggc 17936898
Query: 529 cactgcggccgcggctcgcagtagtccg 556
||||||| | | ||| |||||||||||
Sbjct: 17936897 cactgcgcgctctgctggcagtagtccg 17936870
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
||||||||||||||||||||||| |||||||||| ||| || |||| || || |||
Sbjct: 17937260 tcgcagtagcgcttgtagaagccgatccggtcggcgacgcgatcgtcctcgccatggccg 17937201
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | ||| |||||||||||||||||||| ||||||||
Sbjct: 17937200 cactccagcccgccgttgatgatgttggtgatgacgccgta 17937160
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Minus
Query: 409 acgaggtccgggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttg 468
||||||||||||| | ||| ||||| |||||||||| |||||||||| |||||||||
Sbjct: 17197349 acgaggtccgggtcgccgagcaggtcggcgccgatggcctgccccgccggcccgtagttg 17197290
Query: 469 tagttgaaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggc 528
||||| |||||| ||||||||| || |||||| ||||||||||||||| |||||||||
Sbjct: 17197289 aagttgtaggagagctggatgggaccccggccgtagtacttcttgccggcggcgcacggc 17197230
Query: 529 cactgcggccgcggctcgcagtagtccg 556
||||||| | | ||| |||||||||||
Sbjct: 17197229 cactgcgcgctctgctggcagtagtccg 17197202
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
||||||||||||||||||||||| |||||||||| ||| || |||| || || |||
Sbjct: 17197592 tcgcagtagcgcttgtagaagccgatccggtcggcgacgcgatcgtcctcgccatggccg 17197533
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | ||| |||||||||||||||||||| ||||||||
Sbjct: 17197532 cactccagcccgccgttgatgatgttggtgatgacgccgta 17197492
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 119 bits (60), Expect = 2e-024
Identities = 126/148 (85%)
Strand = Plus / Minus
Query: 409 acgaggtccgggttgttgaggaggtccacgccgatggctcgccccgccgggccgtagttg 468
||||||||||||| | ||| ||||| |||||||||| |||||||||| |||||||||
Sbjct: 17203780 acgaggtccgggtcgccgagcaggtcggcgccgatggcctgccccgccggcccgtagttg 17203721
Query: 469 tagttgaaggagatctggatggggccgcggccgaagtacttcttgccgggcgcgcacggc 528
||||| |||||| ||||||||| || |||||| ||||||||||||||| |||||||||
Sbjct: 17203720 aagttgtaggagagctggatgggaccccggccgtagtacttcttgccggcggcgcacggc 17203661
Query: 529 cactgcggccgcggctcgcagtagtccg 556
||||||| | | ||| |||||||||||
Sbjct: 17203660 cactgcgcgctctgctggcagtagtccg 17203633
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
||||||||||||||||||||||| |||||||||| ||| || |||| || || |||
Sbjct: 17204023 tcgcagtagcgcttgtagaagccgatccggtcggcgacgcgatcgtcctcgccatggccg 17203964
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | ||| |||||||||||||||||||| ||||||||
Sbjct: 17203963 cactccagcccgccgttgatgatgttggtgatgacgccgta 17203923
>gb|CF326349.1|CF326349 JMT1--05-N01.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--05-N01, mRNA sequence
Length = 271
Score = 95.6 bits (48), Expect = 2e-017
Identities = 150/184 (81%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttgttgtcccgcgcgttca 361
|||||||||||||||| || ||||| |||||||||||||||||| | ||| |||
Sbjct: 194 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttgggcgactgcggcgtca 135
Query: 362 tccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccgggt 421
|||||||||| | ||| ||||||||||| | || ||||| ||| || ||||||||||
Sbjct: 134 tccagaaccagaacgccgtcttgaaggagacggtggcgtccgacgccaccaggtccgggt 75
Query: 422 tgttgaggaggtccacgccgatggctcgccccgccgggccgtagttgtagttgaaggaga 481
|| | || |||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 74 tgctcagcaggttggagccgatggcctgccccgccgggccgtagttgtagttgtaggaga 15
Query: 482 tctg 485
||||
Sbjct: 14 tctg 11
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 235 ccgttgatgatgttggtgatcacgccgta 263
||||||||||||||||| | |||||||||
Sbjct: 258 ccgttgatgatgttggtcaccacgccgta 230
>gb|AU077767.1|AU077767 AU077767 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10638_2Z, mRNA sequence
Length = 712
Score = 83.8 bits (42), Expect = 9e-014
Identities = 74/82 (90%), Gaps = 2/82 (2%)
Strand = Plus / Minus
Query: 438 gccgatggctcgccccgccgggccgta-gttgtagttgaaggagatctggatggggccgc 496
||||||||| |||||||||||||||| |||||||||| |||||||||||||||| || |
Sbjct: 213 gccgatggcctgccccgccgggccgtaagttgtagttgtaggagatctggatgggtcccc 154
Query: 497 ggccgaagt-acttcttgccgg 517
||||| ||| ||||||||||||
Sbjct: 153 ggccgtagtaacttcttgccgg 132
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 491 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 432
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 431 cactccacgccgccgttgatgatgttggtcaccacgccgta 391
>gb|AQ287446.1|AQ287446 nbxb0030E24f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0030E24f, DNA sequence
Length = 740
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 80 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 139
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 140 cactccacgccgccgttgatgatgttggtcaccacgccgta 180
Score = 63.9 bits (32), Expect = 9e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttg 345
|||||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 216 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttg 259
>gb|CB000861.1|CB000861 S345K_B10 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 372
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 168 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 109
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 108 cactccacgccgccgttgatgatgttggtcaccacgccgta 68
>gb|CF324345.1|CF324345 HDN--06-E15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--06-E15, mRNA sequence
Length = 507
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 248 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 189
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 188 cactccacgccgccgttgatgatgttggtcaccacgccgta 148
Score = 63.9 bits (32), Expect = 9e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 302 tgggcgtccactgccccgtgatcacggcgtggcacgacggcttg 345
|||||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 112 tgggcgtccactgccctgtcatcaccgcgtggcacgacggcttg 69
>gb|CF331228.1|CF331228 NACL--07-E08.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--07-E08, mRNA sequence
Length = 410
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 258 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 317
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 318 cactccacgccgccgttgatgatgttggtcaccacgccgta 358
>gb|CF331229.1|CF331229 NACL--07-E08.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--07-E08, mRNA sequence
Length = 427
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcggtgacccgggggtccgtcccgtgcccg 222
|||||||||||||||||||| ||||||||||||| ||| | | ||||| ||||| |||
Sbjct: 170 tcgcagtagcgcttgtagaacccaatccggtcggcgactctgctgtccgcgccgtggccg 111
Query: 223 cactcgatcccaccgttgatgatgttggtgatcacgccgta 263
||||| | || ||||||||||||||||| | |||||||||
Sbjct: 110 cactccacgccgccgttgatgatgttggtcaccacgccgta 70
>gb|BP185058.1|BP185058 BP185058 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 12YPR007, mRNA
sequence
Length = 943
Score = 79.8 bits (40), Expect = 1e-012
Identities = 138/170 (81%), Gaps = 3/170 (1%)
Strand = Plus / Minus
Query: 220 ccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcgccccgg 279
||||||||||| || |||||||||||||||||||| ||||| ||||| || | | |||
Sbjct: 680 ccgcactcgatgccgccgttgatgatgttggtgatgacgccatacccggg---gacgcgg 624
Query: 280 ccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtggcacgac 339
||||| || ||||||| |||| ||||||||| | || ||| ||| |||||||||||
Sbjct: 623 ccggcggcggtgtccgccgccgacggcgtccaccggccgaggatgacgtcgtggcacgac 564
Query: 340 ggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaagga 389
|||||||| || |||| ||||||||||||| | || |||||||||||
Sbjct: 563 ggcttgttcccctgcgccgtcatccagaaccagatggccgtcttgaagga 514
Score = 42.1 bits (21), Expect = 0.32
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcg 195
|||||||||||||||||| |||| || ||||||
Sbjct: 737 tcgcagtagcgcttgtagtagccgatgcggtcg 705
>dbj|AK070067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042L15, full
insert sequence
Length = 1073
Score = 79.8 bits (40), Expect = 1e-012
Identities = 138/170 (81%), Gaps = 3/170 (1%)
Strand = Plus / Minus
Query: 220 ccgcactcgatcccaccgttgatgatgttggtgatcacgccgtaccctggcgcgccccgg 279
||||||||||| || |||||||||||||||||||| ||||| ||||| || | | |||
Sbjct: 691 ccgcactcgatgccgccgttgatgatgttggtgatgacgccatacccggg---gacgcgg 635
Query: 280 ccggccgccctgtccgcagccgtgggcgtccactgccccgtgatcacggcgtggcacgac 339
||||| || ||||||| |||| ||||||||| | || ||| ||| |||||||||||
Sbjct: 634 ccggcggcggtgtccgccgccgacggcgtccaccggccgaggatgacgtcgtggcacgac 575
Query: 340 ggcttgttgtcccgcgcgttcatccagaaccacagcgctgtcttgaagga 389
|||||||| || |||| ||||||||||||| | || |||||||||||
Sbjct: 574 ggcttgttcccctgcgccgtcatccagaaccagatggccgtcttgaagga 525
Score = 42.1 bits (21), Expect = 0.32
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 163 tcgcagtagcgcttgtagaagccaatccggtcg 195
|||||||||||||||||| |||| || ||||||
Sbjct: 748 tcgcagtagcgcttgtagtagccgatgcggtcg 716
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 692,568
Number of Sequences: 438736
Number of extensions: 692568
Number of successful extensions: 14361
Number of sequences better than 0.5: 152
Number of HSP's better than 0.5 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13221
Number of HSP's gapped (non-prelim): 1102
length of query: 570
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 549
effective length of database: 2,791,206,460
effective search space: 1532372346540
effective search space used: 1532372346540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)