BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070863.2.1
(992 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK073545.1| Oryza sativa (japonica cultivar-group) cDNA... 547 e-153
dbj|AK109426.2| Oryza sativa (japonica cultivar-group) cDNA... 547 e-153
gb|CF310519.1|CF310519 ABF--05-D11.b1 ABF3-overexpressing t... 440 e-121
gb|CB681507.1|CB681507 OSJNEf07N07.f OSJNEf Oryza sativa (j... 361 5e-097
gb|CF296814.1|CF296814 30DGS--07-F18.b1 Rice leaf plasmid c... 299 1e-078
gb|AU182744.1|AU182744 AU182744 Rice panicle shorter than 3... 283 9e-074
gb|CF307656.1|CF307656 ABF--01-C16.b1 ABF3-overexpressing t... 281 4e-073
gb|C74015.2|C74015 C74015 Rice panicle shorter than 3cm Ory... 281 4e-073
gb|CF307657.1|CF307657 ABF--01-C16.g1 ABF3-overexpressing t... 272 3e-070
gb|CV727317.1|CV727317 14Salt--05-G12.b1 Salt treated rice ... 272 3e-070
gb|CF296815.1|CF296815 30DGS--07-F18.g1 Rice leaf plasmid c... 254 8e-065
gb|CF310520.1|CF310520 ABF--05-D11.g1 ABF3-overexpressing t... 242 3e-061
gb|AU094862.1|AU094862 AU094862 Rice panicle shorter than 3... 208 4e-051
gb|C91870.1|C91870 C91870 Rice panicle shorter than 3cm Ory... 202 3e-049
gb|AU029323.1|AU029323 AU029323 Rice panicle shorter than 3... 194 6e-047
gb|AU029325.1|AU029325 AU029325 Rice panicle shorter than 3... 172 2e-040
gb|AACV01019152.1| Oryza sativa (japonica cultivar-group) c... 163 2e-037
ref|NT_107076.1| Oryza sativa (japonica cultivar-group) 163 2e-037
dbj|AP005583.3| Oryza sativa (japonica cultivar-group) geno... 163 2e-037
dbj|AP005894.3| Oryza sativa (japonica cultivar-group) geno... 163 2e-037
gb|CH401232.1| Oryza sativa (japonica cultivar-group) chrom... 163 2e-037
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 163 2e-037
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 163 2e-037
gb|C91849.1|C91849 C91849 Rice panicle shorter than 3cm Ory... 155 5e-035
gb|CF331415.1|CF331415 NACL--07-I14.b1 Rice callus plasmid ... 125 5e-026
gb|AACV01019151.1| Oryza sativa (japonica cultivar-group) c... 119 3e-024
gb|CF331416.1|CF331416 NACL--07-I14.g1 Rice callus plasmid ... 105 5e-020
gb|CV727976.1|CV727976 14Salt--06-G17.b1 Salt treated rice ... 54 1e-004
dbj|AP004333.3| Oryza sativa (japonica cultivar-group) geno... 48 0.009
dbj|AK070356.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
gb|AACV01017061.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
ref|XM_479614.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.009
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.009
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 44 0.14
gb|AACV01014833.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
dbj|AP003935.3| Oryza sativa (japonica cultivar-group) geno... 44 0.14
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.14
>dbj|AK073545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041K02, full
insert sequence
Length = 1127
Score = 547 bits (276), Expect = e-153
Identities = 630/748 (84%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 175 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 234
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 235 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 294
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
|||||||||||||| |||||||||| |||||||||| | ||| |||||||| ||||| |
Sbjct: 295 tctcctcccgcaagaagaagaacgtcgacgaggcggtcgtgggcctcagggcgaagggga 354
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||||| || || | |||||||| |||||| | | |||||||||||| ||||||||
Sbjct: 355 tcaccgtcgtcggggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcg 414
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||| ||||||| |||||||| || || || |||||||||||||||| || ||||
Sbjct: 415 acacggcggtcaagaattttgggcatatcgacatagttgtctccaatgctgctgccaatc 474
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
|||| ||||||| |||| | |||||||||||| || | || || || || ||||||||||
Sbjct: 475 cttccgtagataacatattagaaatgaaagagcctatccttgacaaactatgggatatta 534
Query: 410 acgtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcat 469
| || ||||| ||||| |||||| |||||||||||||| | | | |||||||| ||||
Sbjct: 535 atgttaaggcatctattcttcttcttcaggatgctgctgcatatttgcggaagggatcat 594
Query: 470 ctgtgattattatttcttcaattgctggttacaatccagaacaaggattgacaatgtatg 529
| ||||| | |||||||||||| |||| || |||||||||| || |||| | |||||||
Sbjct: 595 ccgtgatattgatttcttcaattactggctataatccagaaccagcattgtcgatgtatg 654
Query: 530 gtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatgggacccg 589
||| ||||| ||||| || |||||||||| ||||||||||||| ||||||||| ||
Sbjct: 655 ctgttacaaaaactgccctgcttggtctcacaaaggctcttgctgctgagatggggccaa 714
Query: 590 atactcgtgttaactgtatagcccctggttttgttcctacacggtttgctagtttcctca 649
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 715 atactcgtgttaactgtatagcccctggttttgttcctacaaattttgctcgtttcctca 774
Query: 650 cagaaaatgagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggta 709
|| ||||| ||||||| || ||||||| || |||| || ||||||||||||||||
Sbjct: 775 caactaatgacaccattaaaaatgagcttattgacaggagcacacttaagagattgggta 834
Query: 710 ctgtggaagacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacatta 769
||||||||||||||||||| || || ||||| |||| || ||||| ||||||| |||||
Sbjct: 835 ctgtggaagacatggctgcagccgcagctttcttggcatcagacgatgcatcattcatta 894
Query: 770 cggctgaaaccattgttgttgctggagg 797
| |||||||| |||||||||||||||||
Sbjct: 895 cagctgaaactattgttgttgctggagg 922
>dbj|AK109426.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E02, full
insert sequence
Length = 1013
Score = 547 bits (276), Expect = e-153
Identities = 630/748 (84%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 83 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 142
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 143 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 202
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
|||||||||||||| |||||||||| |||||||||| | ||| |||||||| ||||| |
Sbjct: 203 tctcctcccgcaagaagaagaacgtcgacgaggcggtcgtgggcctcagggcgaagggga 262
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||||| || || | |||||||| |||||| | | |||||||||||| ||||||||
Sbjct: 263 tcaccgtcgtcggggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcg 322
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||| ||||||| |||||||| || || || |||||||||||||||| || ||||
Sbjct: 323 acacggcggtcaagaattttgggcatatcgacatagttgtctccaatgctgctgccaatc 382
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
|||| ||||||| |||| | |||||||||||| || | || || || || ||||||||||
Sbjct: 383 cttccgtagataacatattagaaatgaaagagcctatccttgacaaactatgggatatta 442
Query: 410 acgtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcat 469
| || ||||| ||||| |||||| |||||||||||||| | | | |||||||| ||||
Sbjct: 443 atgttaaggcatctattcttcttcttcaggatgctgctgcatatttgcggaagggatcat 502
Query: 470 ctgtgattattatttcttcaattgctggttacaatccagaacaaggattgacaatgtatg 529
| ||||| | |||||||||||| |||| || |||||||||| || |||| | |||||||
Sbjct: 503 ccgtgatattgatttcttcaattactggctataatccagaaccagcattgtcgatgtatg 562
Query: 530 gtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatgggacccg 589
||| ||||| ||||| || |||||||||| ||||||||||||| ||||||||| ||
Sbjct: 563 ctgttacaaaaactgccctgcttggtctcacaaaggctcttgctgctgagatggggccaa 622
Query: 590 atactcgtgttaactgtatagcccctggttttgttcctacacggtttgctagtttcctca 649
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 623 atactcgtgttaactgtatagcccctggttttgttcctacaaattttgctcgtttcctca 682
Query: 650 cagaaaatgagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggta 709
|| ||||| ||||||| || ||||||| || |||| || ||||||||||||||||
Sbjct: 683 caactaatgacaccattaaaaatgagcttattgacaggagcacacttaagagattgggta 742
Query: 710 ctgtggaagacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacatta 769
||||||||||||||||||| || || ||||| |||| || ||||| ||||||| |||||
Sbjct: 743 ctgtggaagacatggctgcagccgcagctttcttggcatcagacgatgcatcattcatta 802
Query: 770 cggctgaaaccattgttgttgctggagg 797
| |||||||| |||||||||||||||||
Sbjct: 803 cagctgaaactattgttgttgctggagg 830
>gb|CF310519.1|CF310519 ABF--05-D11.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-D11, mRNA sequence
Length = 686
Score = 440 bits (222), Expect = e-121
Identities = 507/602 (84%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 47 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 106
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 107 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 166
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
|||||||||||||| |||||||||| |||||||||| | ||| |||||||| ||||| |
Sbjct: 167 tctcctcccgcaagaagaagaacgtcgacgaggcggtcgtgggcctcagggcgaagggga 226
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||||| || || | |||||||| |||||| | | |||||||||||| ||||||||
Sbjct: 227 tcaccgtcgtcggggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcg 286
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||| ||||||| |||||||| || || || ||||||||||||| || || ||||
Sbjct: 287 acacggcggtcaagaattttgggcatatcgacatagttgtctccaatgccgctgccaatc 346
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
|||| ||||||| |||| | |||||||||||| || | || || || || ||||||||||
Sbjct: 347 cttccgtagataacatattagaaatgaaagagcctatccttgacaaactatgggatatta 406
Query: 410 acgtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcat 469
| || ||||| ||||| |||||| |||||||||||||| | | | |||||||| ||||
Sbjct: 407 atgttaaggcatctattcttcttcttcaggatgctgctgcatatttgcggaagggatcat 466
Query: 470 ctgtgattattatttcttcaattgctggttacaatccagaacaaggattgacaatgtatg 529
| ||||| | |||||||||||| |||| || |||||||||| || |||| | |||||||
Sbjct: 467 ccgtgatattgatttcttcaattactggctataatccagaaccagcattgtcgatgtatg 526
Query: 530 gtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatgggacccg 589
||| ||||| ||||| || |||||||||| ||||||||||||| ||||||||| ||
Sbjct: 527 ctgttacaaaaactgccctgcttggtctcacaaaggctcttgctgctgagatggggccaa 586
Query: 590 atactcgtgttaactgtatagcccctggttttgttcctacacggtttgctagtttcctca 649
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 587 atactcgtgttaactgtatagcccctggttttgttcctacaaattttgctcgtttcctca 646
Query: 650 ca 651
||
Sbjct: 647 ca 648
>gb|CB681507.1|CB681507 OSJNEf07N07.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf07N07 5', mRNA sequence
Length = 719
Score = 361 bits (182), Expect = 5e-097
Identities = 470/566 (83%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 154 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 213
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| || ||||| ||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 214 cgcaaggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccggcgtca 273
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
|||||||||||||| |||||||||| |||||||||| | ||| |||||||| ||||| |
Sbjct: 274 tctcctcccgcaagaagaagaacgtcgacgaggcggtcgtgggcctcagggcgaagggga 333
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||||| || || | |||||||| |||||| | | |||||||||||| ||||||||
Sbjct: 334 tcaccgtcgtcggggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcg 393
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||| ||||||| |||||||| || || || |||||||||||||||| || ||||
Sbjct: 394 acacggcggtcaagaattttgggcatatcgacatagttgtctccaatgctgctgccaatc 453
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
|||| ||||||| |||| | |||||||||||| || | || || || || ||||||||||
Sbjct: 454 cttccgtagataacatattagaaatgaaagagcctatccttgacaaactatgggatatta 513
Query: 410 acgtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcat 469
| || ||||| ||||| |||||| |||||||||||||| | | | |||||||| || |
Sbjct: 514 atgttaaggcatctattcttcttcttcaggatgctgctgcatatttgcggaagggatcgt 573
Query: 470 ctgtgattattatttcttcaattgctggttacaatccagaacaaggattgacaatgtatg 529
| | ||| | |||||||||||| |||| || |||||||||| || |||| | ||| |||
Sbjct: 574 ccgggatattgatttcttcaattactggctataatccagaaccagcattgtcgatgaatg 633
Query: 530 gtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatgggacccg 589
||| |||| ||||| || |||||||||| ||||||||||||| ||||||||| ||
Sbjct: 634 ctgttacaataactgccctgcttggtctcacaaaggctcttgctgctgagatggggccaa 693
Query: 590 atactcgtgttaactgtatagcccct 615
||||||||||||||||||||||||||
Sbjct: 694 atactcgtgttaactgtatagcccct 719
>gb|CF296814.1|CF296814 30DGS--07-F18.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--07-F18, mRNA sequence
Length = 640
Score = 299 bits (151), Expect = 1e-078
Identities = 370/443 (83%)
Strand = Plus / Minus
Query: 355 gtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatattaacgtc 414
||||||| |||| | |||||||||||| || | || || || || ||||||||||| ||
Sbjct: 640 gtagataacatattagaaatgaaagagcctatccttgacaaactatgggatattaatgtt 581
Query: 415 aaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcatctgtg 474
||||| ||||| |||||| |||||||||||||| | | | |||||||| ||||| |||
Sbjct: 580 aaggcatctattcttcttcttcaggatgctgctgcatatttgcggaagggatcatccgtg 521
Query: 475 attattatttcttcaattgctggttacaatccagaacaaggattgacaatgtatggtgtc 534
|| | |||||||||||| |||| | |||||||||| || |||| | ||||||| |||
Sbjct: 520 atattgatttcttcaattactggccataatccagaaccagcattgtcgatgtatgctgtt 461
Query: 535 acaaagactgctctctttggtctcacgaaggctcttgctggtgagatgggacccgatact 594
||||| ||||| || |||||||||| ||||||||||||| ||||||||| || |||||
Sbjct: 460 acaaaaactgccctgcttggtctcacaaaggctcttgctgctgagatggggccaaatact 401
Query: 595 cgtgttaactgtatagcccctggttttgttcctacacggtttgctagtttcctcacagaa 654
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 400 cgtgttaactgtatagcccctggttttgttcctacaaattttgctcgtttcctcacaact 341
Query: 655 aatgagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggtactgtg 714
||||| ||||||| || ||||||| || |||| || |||||||||||||||||||||
Sbjct: 340 aatgacaccattaaaaatgagcttattgacaggagcacacttaagagattgggtactgtg 281
Query: 715 gaagacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacattacggct 774
|||||||||||||| || || ||||| |||| || ||||| ||||||| |||||| |||
Sbjct: 280 gaagacatggctgcagccgcagctttcttggcatcagacgatgcatcattcattacagct 221
Query: 775 gaaaccattgttgttgctggagg 797
||||| |||||||||||||||||
Sbjct: 220 gaaactattgttgttgctggagg 198
>gb|AU182744.1|AU182744 AU182744 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30161, mRNA sequence
Length = 444
Score = 283 bits (143), Expect = 9e-074
Identities = 323/383 (84%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 61 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 120
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 121 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 180
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
|||||||||||||| |||||||||| |||||||||| | ||| |||||||| ||||| |
Sbjct: 181 tctcctcccgcaagaagaagaacgtcgacgaggcggtcgtgggcctcagggcgaagggga 240
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||||| || || | |||||||| |||||| | | |||||||||||| ||||||||
Sbjct: 241 tcaccgtcgtcggggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcg 300
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||| ||||||| |||||||| || || || |||||||||||||||| || ||||
Sbjct: 301 acacggcggtcaagaattttgggcatatcgacatagttgtctccaatgctgctgccaatc 360
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
|||| ||||||| |||| | |||||||||||| || | || || || || ||||||||||
Sbjct: 361 cttccgtagataacatattagaaatgaaagagcctatccttgacaaactatgggatatta 420
Query: 410 acgtcaaggcttctatccttctt 432
| || ||||| ||||| ||||||
Sbjct: 421 atgttaaggcatctattcttctt 443
>gb|CF307656.1|CF307656 ABF--01-C16.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--01-C16, mRNA sequence
Length = 585
Score = 281 bits (142), Expect = 4e-073
Identities = 322/382 (84%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 204 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 263
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 264 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 323
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
|||||||||||||| |||||||||| |||||||||| | ||| |||||||| ||||| |
Sbjct: 324 tctcctcccgcaagaagaagaacgtcgacgaggcggtcgtgggcctcagggcgaagggga 383
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||||| || || | |||||||| |||||| | | |||||||||||| ||||||||
Sbjct: 384 tcaccgtcgtcggggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcg 443
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||| ||||||| |||||||| || || || |||||||||||||||| || ||||
Sbjct: 444 acacggcggtcaagaattttgggcatatcgacatagttgtctccaatgctgctgccaatc 503
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
|||| ||||||| |||| | |||||||||||| || | || || || || ||||||||||
Sbjct: 504 cttccgtagataacatattagaaatgaaagagcctatccttgacaaactatgggatatta 563
Query: 410 acgtcaaggcttctatccttct 431
| || ||||| ||||| |||||
Sbjct: 564 atgttaaggcatctattcttct 585
>gb|C74015.2|C74015 C74015 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30157_1A, mRNA sequence
Length = 457
Score = 281 bits (142), Expect = 4e-073
Identities = 336/398 (84%), Gaps = 2/398 (0%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 61 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 120
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 121 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 180
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
|||||||||||||| |||||||||| |||||||||| | ||| |||||||| ||||| |
Sbjct: 181 tctcctcccgcaagaagaagaacgtcgacgaggcggtcgtgggcctcagggcgaagggga 240
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||||| || || | |||||||| |||||| | | |||||||||||| ||||||||
Sbjct: 241 tcaccgtcgtcggggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcg 300
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||| ||||||| |||||||| || || || |||||||||||||||| || ||||
Sbjct: 301 acacggcggtcaagaattttgggcatatcgacatagttgtctccaatgctgctgccaatc 360
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
|||| ||||||| |||| | |||||||||||| || | || || || || ||||||||||
Sbjct: 361 cttccgtagataacatattagaaatgaaagag-ctatccttgacaa-ctatgggatatta 418
Query: 410 acgtcaaggcttctatccttcttattcaggatgctgct 447
| || || || ||||| |||||| ||||||||||||||
Sbjct: 419 atgttaaagcatctattcttcttcttcaggatgctgct 456
>gb|CF307657.1|CF307657 ABF--01-C16.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--01-C16, mRNA sequence
Length = 558
Score = 272 bits (137), Expect = 3e-070
Identities = 290/341 (85%)
Strand = Plus / Minus
Query: 457 cggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaacaagga 516
|||||||| ||||| ||||| | |||||||||||| |||| || |||||||||| || |
Sbjct: 538 cggaagggatcatccgtgatattgatttcttcaattactggctataatccagaaccagca 479
Query: 517 ttgacaatgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggt 576
||| | ||||||| ||| ||||| ||||| || |||||||||| ||||||||||||| |
Sbjct: 478 ttgtcgatgtatgctgttacaaaaactgccctgcttggtctcacaaaggctcttgctgct 419
Query: 577 gagatgggacccgatactcgtgttaactgtatagcccctggttttgttcctacacggttt 636
|||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 418 gagatggggccaaatactcgtgttaactgtatagcccctggttttgttcctacaaatttt 359
Query: 637 gctagtttcctcacagaaaatgagaccattaggaaagagcttaacgagaggaccaagctt 696
||| ||||||||||| ||||| ||||||| || ||||||| || |||| || |||
Sbjct: 358 gctcgtttcctcacaactaatgacaccattaaaaatgagcttattgacaggagcacactt 299
Query: 697 aagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgacgac 756
|||||||||||||||||||||||||||||||| || || ||||| |||| || |||||
Sbjct: 298 aagagattgggtactgtggaagacatggctgcagccgcagctttcttggcatcagacgat 239
Query: 757 gcatcatacattacggctgaaaccattgttgttgctggagg 797
||||||| |||||| |||||||| |||||||||||||||||
Sbjct: 238 gcatcattcattacagctgaaactattgttgttgctggagg 198
>gb|CV727317.1|CV727317 14Salt--05-G12.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--05-G12, mRNA sequence
Length = 525
Score = 272 bits (137), Expect = 3e-070
Identities = 305/361 (84%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 161 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 220
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 221 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 280
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
|||||||||||||| |||||||||| |||||||||| | ||| |||||||| ||||| |
Sbjct: 281 tctcctcccgcaagaagaagaacgtcgacgaggcggtcgtgggcctcagggcgaagggga 340
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||||| || || | |||||||| |||||| | | |||||||||||| ||||||||
Sbjct: 341 tcaccgtcgtcggggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcg 400
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||| ||||||| |||||||| || || || |||||||||||||||| || ||||
Sbjct: 401 acacggcggtcaagaattttgggcatatcgacatagttgtctccaatgctgctgccaatc 460
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
|||| ||||||| |||| | |||||||||||| || | || || || || ||||||||||
Sbjct: 461 cttccgtagataacatattagaaatgaaagagcctatccttgacaaactatgggatatta 520
Query: 410 a 410
|
Sbjct: 521 a 521
>gb|CF296815.1|CF296815 30DGS--07-F18.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--07-F18, mRNA sequence
Length = 467
Score = 254 bits (128), Expect = 8e-065
Identities = 368/448 (82%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 13 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 72
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct: 73 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgcctccgtcgtca 132
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
|||||||||||| |||||||| |||||||||| | ||| |||||||| || || |
Sbjct: 133 tctcctcccgcattattaagaacgtcgacgaggcggtcgtgggcctcagggcgaatggga 192
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||||| || || | |||||||| |||||| | | |||||||||||| ||||||||
Sbjct: 193 tcaccgtcgtcggggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcg 252
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatc 349
| ||||| ||||||| |||||||| || || || |||||||||||||||| || ||||
Sbjct: 253 acacggcggtcaagaattttgggcatatcgacatagttgtctccaatgctgctgccaatc 312
Query: 350 cttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatatta 409
|||| ||||||| |||| | ||||||||||| || | || || || || ||||||||||
Sbjct: 313 cttccgtagataacatattataaatgaaagagcctatccttgacaaactatgggatatta 372
Query: 410 acgtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcat 469
| || ||||| ||||| |||||| |||||||||||||| | | | |||||||| ||||
Sbjct: 373 atgttaaggcatctattcttcttcttcaggatgctgctgcatatttgcggaagggatcat 432
Query: 470 ctgtgattattatttcttcaattgctgg 497
| ||||| | |||||||||||| ||||
Sbjct: 433 ccgtgatattgatttcttcaattactgg 460
>gb|CF310520.1|CF310520 ABF--05-D11.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--05-D11, mRNA sequence
Length = 569
Score = 242 bits (122), Expect = 3e-061
Identities = 288/342 (84%), Gaps = 1/342 (0%)
Strand = Plus / Minus
Query: 457 cggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaacaagga 516
|||||||| ||||| ||||| | |||||||||||| |||| || |||||||||| || |
Sbjct: 547 cggaagggatcatccgtgatattgatttcttcaattactggctataatccagaaccagca 488
Query: 517 ttgacaatgtatggtgtcacaaagac-tgctctctttggtctcacgaaggctcttgctgg 575
||| | ||||||| ||| ||||| || ||| || |||||||||| |||||||||||||
Sbjct: 487 ttgtcgatgtatgctgttacaaaaacatgccctgcttggtctcacaaaggctcttgctgc 428
Query: 576 tgagatgggacccgatactcgtgttaactgtatagcccctggttttgttcctacacggtt 635
||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 427 tgagatggggccaaatactcgtgttaactgtatagcccctggttttgttcctacaaattt 368
Query: 636 tgctagtttcctcacagaaaatgagaccattaggaaagagcttaacgagaggaccaagct 695
|||| |||||||| || ||||| | ||||| || ||||||| || |||| || ||
Sbjct: 367 tgctcgtttcctcccaactaatgacatcattaaaaatgagcttattgacaggagcacact 308
Query: 696 taagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgacga 755
||||||||||||||||||||||||||||||||| | || |||||| |||| || |||||
Sbjct: 307 taagagattgggtactgtggaagacatggctgcaaccgcagcttttttggcatcagacga 248
Query: 756 cgcatcatacattacggctgaaaccattgttgttgctggagg 797
||||||| |||||| |||||||| |||||||||||||||||
Sbjct: 247 tgcatcattcattacagctgaaactattgttgttgctggagg 206
>gb|AU094862.1|AU094862 AU094862 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31984, mRNA sequence
Length = 485
Score = 208 bits (105), Expect = 4e-051
Identities = 203/236 (86%)
Strand = Plus / Plus
Query: 562 aaggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggtttt 621
||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 30 aaggctcttgctgctgagatggggccaaatactcgtgttaactgtatagcccctggtttt 89
Query: 622 gttcctacacggtttgctagtttcctcacagaaaatgagaccattaggaaagagcttaac 681
||||||||| |||||| ||||||||||| ||||| |||||| || |||||||
Sbjct: 90 gttcctacaaattttgctcgtttcctcacaactaatgacnccattaaaaatgagcttatt 149
Query: 682 gagaggaccaagcttaagagattgggtactgtggaagacatggctgcggctgcggctttt 741
|| |||| || ||||||||||||||||||||||||||||||||||| || || |||||
Sbjct: 150 gacaggagcacacttaagagattgggtactgtggaagacatggctgcagccgcagctttc 209
Query: 742 ctggcgtctgacgacgcatcatacattacggctgaaaccattgttgttgctggagg 797
|||| || ||||| ||||||| |||||| |||||||| |||||||||||||||||
Sbjct: 210 ttggcatcagacgatgcatcattcattacagctgaaactattgttgttgctggagg 265
>gb|C91870.1|C91870 C91870 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31984_2A, mRNA sequence
Length = 460
Score = 202 bits (102), Expect = 3e-049
Identities = 244/292 (83%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 165 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 224
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| |||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 225 cgcagggcatcggtctcgccatcgccgagcgcctcgccctcgagggcgccgccgtcgtca 284
Query: 170 tctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggta 229
|||||||||||||| |||||||||| |||||||||| | ||| |||||||| ||||| |
Sbjct: 285 tctcctcccgcaagaagaagaacgtcgacgaggcggtcgtgggcctcagggcgaagggga 344
Query: 230 tcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||||| || || | |||||||| |||||| | | ||||||| |||| ||||||||
Sbjct: 345 tcaccgtcgtcggggtggtctgccatgtctccatcccggagcagcgaaagaacctcatcg 404
Query: 290 agacggccgtcaagagctttgggcacatagatattcttgtctccaatgctgc 341
| | ||| ||||||| ||| |||| || || || |||| |||||||||||
Sbjct: 405 acanggcggtcaagaatttttggcatatcgacatagttgtntccaatgctgc 456
>gb|AU029323.1|AU029323 AU029323 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30157_6Z, mRNA sequence
Length = 529
Score = 194 bits (98), Expect = 6e-047
Identities = 260/313 (83%), Gaps = 3/313 (0%)
Strand = Plus / Plus
Query: 488 caattgctggttacaatccagaacaaggattgacaatgtatggtgtcacaaagactgctc 547
||||| |||| || |||||||||| || | || | ||||| | ||| ||||| ||||| |
Sbjct: 4 caattactggctataatccagaaccagcantgtcgatgtangctgttacaaaaactgccc 63
Query: 548 tctttggtctcacgaaggctcttgctggtgagatgggacccgatactcgtgtt--aactg 605
| |||||||||| ||||||||||||| ||||||||| || ||||||||| | |||||
Sbjct: 64 tgcttggtctcacaaaggctcttgctgctgagatggggccaaatactcgtggttaaactg 123
Query: 606 -tatagcccctggttttgttcctacacggtttgctagtttcctcacagaaaatgagacca 664
||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||
Sbjct: 124 gtatagcccctggttttgttcctacaaattttgctcgtttcctcacaactaatgacacca 183
Query: 665 ttaggaaagagcttaacgagaggaccaagcttaagagattgggtactgtggaagacatgg 724
||| || ||||||| || |||| || |||||||||||||||||||||||||||||||
Sbjct: 184 ttaaaaatgagcttattgacaggagcacacttaagagattgggtactgtggaagacatgg 243
Query: 725 ctgcggctgcggcttttctggcgtctgacgacgcatcatacattacggctgaaaccattg 784
|| | || || ||||| |||| || ||||| ||||||| |||||| |||||||| ||||
Sbjct: 244 ctncagccgcagctttnttggcatcagacgatgcatcattcattacagctgaaactattg 303
Query: 785 ttgttgctggagg 797
|||||||||||||
Sbjct: 304 ttgttgctggagg 316
>gb|AU029325.1|AU029325 AU029325 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30161_6Z, mRNA sequence
Length = 473
Score = 172 bits (87), Expect = 2e-040
Identities = 214/251 (85%), Gaps = 4/251 (1%)
Strand = Plus / Plus
Query: 551 ttggtctcacgaaggctcttgctggtgagatgggacccgat-act-cgtgttaactgtat 608
|||||||||| ||||||||||||| ||||||||| || || ||| ||||||||||||||
Sbjct: 10 ttggtctcacaaaggctcttgctgctgagatggggccaaataactncgtgttaactgtat 69
Query: 609 agcccctgg-ttttgtt-cctacacggtttgctagtttcctcacagaaaatgagaccatt 666
||||||||| ||||||| |||||| |||||| ||||||||||| ||||| ||||||
Sbjct: 70 agcccctggtttttgttccctacaaattttgctcgtttcctcacaactaatgacaccatt 129
Query: 667 aggaaagagcttaacgagaggaccaagcttaagagattgggtactgtggaagacatggct 726
| || ||||||| || |||| || |||||||||||||||||||||||||||||||||
Sbjct: 130 aaaaatgagcttattgacaggagcacacttaagagattgggtactgtggaagacatggct 189
Query: 727 gcggctgcggcttttctggcgtctgacgacgcatcatacattacggctgaaaccattgtt 786
|| || || ||||| |||| || ||||| ||||||| |||||| |||||||| ||||||
Sbjct: 190 gcagccgcagctttcttggcatcagacgatgcatcattcattacagctgaaactattgtt 249
Query: 787 gttgctggagg 797
|||||||||||
Sbjct: 250 gttgctggagg 260
>gb|AACV01019152.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019152, whole
genome shotgun sequence
Length = 7026
Score = 163 bits (82), Expect = 2e-037
Identities = 121/134 (90%)
Strand = Plus / Minus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 4086 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 4027
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 4026 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 3967
Query: 170 tctcctcccgcaag 183
||||||||||||||
Sbjct: 3966 tctcctcccgcaag 3953
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 563 aggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggttttg 622
|||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 1263 aggctcttgctgctgagatggggccaaatactcgtgttaactgtatagcccctggttttg 1204
Query: 623 ttcctacacggtttgctagtttcctcaca 651
|||||||| |||||| |||||||||||
Sbjct: 1203 ttcctacaaattttgctcgtttcctcaca 1175
Score = 83.8 bits (42), Expect = 2e-013
Identities = 96/114 (84%)
Strand = Plus / Minus
Query: 326 ttgtctccaatgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctg 385
|||||||||||||||| || |||||||| ||||||| |||| | |||||||||||| ||
Sbjct: 2514 ttgtctccaatgctgctgccaatccttccgtagataacatattagaaatgaaagagccta 2455
Query: 386 ttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattcagg 439
| || || || || ||||||||||| || ||||| ||||| |||||| ||||||
Sbjct: 2454 tccttgacaaactatgggatattaatgttaaggcatctattcttcttcttcagg 2401
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 183 gcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcggttgg 242
|||||||||||| |||||||||| | ||| |||||||| ||||| ||||||| || ||
Sbjct: 3883 gcagaagaacgtcgacgaggcggtcgtgggcctcagggcgaaggggatcaccgtcgtcgg 3824
Query: 243 tgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgagacggccgtcaa 302
| |||||||| |||||| | | |||||||||||| ||||||||| ||||| |||||
Sbjct: 3823 ggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcgacacggcggtcaa 3764
Query: 303 g 303
|
Sbjct: 3763 g 3763
Score = 65.9 bits (33), Expect = 4e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 457 cggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaacaagga 516
|||||||| ||||| ||||| | |||||||||||| |||| || |||||||||| || |
Sbjct: 2284 cggaagggatcatccgtgatattgatttcttcaattactggctataatccagaaccagca 2225
Query: 517 ttgacaatgtatggtgtcacaaagactgctctctttggtctcacgaagg 565
||| | ||||||| ||| ||||| ||||| || |||||||||| ||||
Sbjct: 2224 ttgtcgatgtatgctgttacaaaaactgccctgcttggtctcacaaagg 2176
Score = 44.1 bits (22), Expect = 0.14
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 314 acatagatattcttgtctccaatgctgccgcaaatcct 351
|||| |||||| |||||||||||||| | |||||||||
Sbjct: 2605 acattgatattgttgtctccaatgctactgcaaatcct 2568
>ref|NT_107076.1| Oryza sativa (japonica cultivar-group)
Length = 2702857
Score = 163 bits (82), Expect = 2e-037
Identities = 121/134 (90%)
Strand = Plus / Minus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 2465055 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 2464996
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 2464995 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 2464936
Query: 170 tctcctcccgcaag 183
||||||||||||||
Sbjct: 2464935 tctcctcccgcaag 2464922
Score = 119 bits (60), Expect = 3e-024
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 694 cttaagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgac 753
||||||||||||||||||||||||||||||||||| || || ||||| |||| || |||
Sbjct: 2460802 cttaagagattgggtactgtggaagacatggctgcagccgcagctttcttggcatcagac 2460743
Query: 754 gacgcatcatacattacggctgaaaccattgttgttgctggagg 797
|| ||||||| |||||| |||||||| |||||||||||||||||
Sbjct: 2460742 gatgcatcattcattacagctgaaactattgttgttgctggagg 2460699
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 563 aggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggttttg 622
|||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 2462232 aggctcttgctgctgagatggggccaaatactcgtgttaactgtatagcccctggttttg 2462173
Query: 623 ttcctacacggtttgctagtttcctcaca 651
|||||||| |||||| |||||||||||
Sbjct: 2462172 ttcctacaaattttgctcgtttcctcaca 2462144
Score = 83.8 bits (42), Expect = 2e-013
Identities = 96/114 (84%)
Strand = Plus / Minus
Query: 326 ttgtctccaatgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctg 385
|||||||||||||||| || |||||||| ||||||| |||| | |||||||||||| ||
Sbjct: 2463483 ttgtctccaatgctgctgccaatccttccgtagataacatattagaaatgaaagagccta 2463424
Query: 386 ttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattcagg 439
| || || || || ||||||||||| || ||||| ||||| |||||| ||||||
Sbjct: 2463423 tccttgacaaactatgggatattaatgttaaggcatctattcttcttcttcagg 2463370
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 183 gcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcggttgg 242
|||||||||||| |||||||||| | ||| |||||||| ||||| ||||||| || ||
Sbjct: 2464852 gcagaagaacgtcgacgaggcggtcgtgggcctcagggcgaaggggatcaccgtcgtcgg 2464793
Query: 243 tgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgagacggccgtcaa 302
| |||||||| |||||| | | |||||||||||| ||||||||| ||||| |||||
Sbjct: 2464792 ggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcgacacggcggtcaa 2464733
Query: 303 g 303
|
Sbjct: 2464732 g 2464732
Score = 65.9 bits (33), Expect = 4e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 457 cggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaacaagga 516
|||||||| ||||| ||||| | |||||||||||| |||| || |||||||||| || |
Sbjct: 2463253 cggaagggatcatccgtgatattgatttcttcaattactggctataatccagaaccagca 2463194
Query: 517 ttgacaatgtatggtgtcacaaagactgctctctttggtctcacgaagg 565
||| | ||||||| ||| ||||| ||||| || |||||||||| ||||
Sbjct: 2463193 ttgtcgatgtatgctgttacaaaaactgccctgcttggtctcacaaagg 2463145
Score = 44.1 bits (22), Expect = 0.14
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 314 acatagatattcttgtctccaatgctgccgcaaatcct 351
|||| |||||| |||||||||||||| | |||||||||
Sbjct: 2463574 acattgatattgttgtctccaatgctactgcaaatcct 2463537
>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0406E03
Length = 201069
Score = 163 bits (82), Expect = 2e-037
Identities = 121/134 (90%)
Strand = Plus / Minus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 50309 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 50250
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 50249 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 50190
Query: 170 tctcctcccgcaag 183
||||||||||||||
Sbjct: 50189 tctcctcccgcaag 50176
Score = 119 bits (60), Expect = 3e-024
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 694 cttaagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgac 753
||||||||||||||||||||||||||||||||||| || || ||||| |||| || |||
Sbjct: 46056 cttaagagattgggtactgtggaagacatggctgcagccgcagctttcttggcatcagac 45997
Query: 754 gacgcatcatacattacggctgaaaccattgttgttgctggagg 797
|| ||||||| |||||| |||||||| |||||||||||||||||
Sbjct: 45996 gatgcatcattcattacagctgaaactattgttgttgctggagg 45953
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 563 aggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggttttg 622
|||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 47486 aggctcttgctgctgagatggggccaaatactcgtgttaactgtatagcccctggttttg 47427
Query: 623 ttcctacacggtttgctagtttcctcaca 651
|||||||| |||||| |||||||||||
Sbjct: 47426 ttcctacaaattttgctcgtttcctcaca 47398
Score = 83.8 bits (42), Expect = 2e-013
Identities = 96/114 (84%)
Strand = Plus / Minus
Query: 326 ttgtctccaatgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctg 385
|||||||||||||||| || |||||||| ||||||| |||| | |||||||||||| ||
Sbjct: 48737 ttgtctccaatgctgctgccaatccttccgtagataacatattagaaatgaaagagccta 48678
Query: 386 ttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattcagg 439
| || || || || ||||||||||| || ||||| ||||| |||||| ||||||
Sbjct: 48677 tccttgacaaactatgggatattaatgttaaggcatctattcttcttcttcagg 48624
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 183 gcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcggttgg 242
|||||||||||| |||||||||| | ||| |||||||| ||||| ||||||| || ||
Sbjct: 50106 gcagaagaacgtcgacgaggcggtcgtgggcctcagggcgaaggggatcaccgtcgtcgg 50047
Query: 243 tgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgagacggccgtcaa 302
| |||||||| |||||| | | |||||||||||| ||||||||| ||||| |||||
Sbjct: 50046 ggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcgacacggcggtcaa 49987
Query: 303 g 303
|
Sbjct: 49986 g 49986
Score = 65.9 bits (33), Expect = 4e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 457 cggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaacaagga 516
|||||||| ||||| ||||| | |||||||||||| |||| || |||||||||| || |
Sbjct: 48507 cggaagggatcatccgtgatattgatttcttcaattactggctataatccagaaccagca 48448
Query: 517 ttgacaatgtatggtgtcacaaagactgctctctttggtctcacgaagg 565
||| | ||||||| ||| ||||| ||||| || |||||||||| ||||
Sbjct: 48447 ttgtcgatgtatgctgttacaaaaactgccctgcttggtctcacaaagg 48399
Score = 44.1 bits (22), Expect = 0.14
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 314 acatagatattcttgtctccaatgctgccgcaaatcct 351
|||| |||||| |||||||||||||| | |||||||||
Sbjct: 48828 acattgatattgttgtctccaatgctactgcaaatcct 48791
>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBa0095O23
Length = 159792
Score = 163 bits (82), Expect = 2e-037
Identities = 121/134 (90%)
Strand = Plus / Minus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 142129 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 142070
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 142069 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 142010
Query: 170 tctcctcccgcaag 183
||||||||||||||
Sbjct: 142009 tctcctcccgcaag 141996
Score = 119 bits (60), Expect = 3e-024
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 694 cttaagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgac 753
||||||||||||||||||||||||||||||||||| || || ||||| |||| || |||
Sbjct: 137876 cttaagagattgggtactgtggaagacatggctgcagccgcagctttcttggcatcagac 137817
Query: 754 gacgcatcatacattacggctgaaaccattgttgttgctggagg 797
|| ||||||| |||||| |||||||| |||||||||||||||||
Sbjct: 137816 gatgcatcattcattacagctgaaactattgttgttgctggagg 137773
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 563 aggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggttttg 622
|||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 139306 aggctcttgctgctgagatggggccaaatactcgtgttaactgtatagcccctggttttg 139247
Query: 623 ttcctacacggtttgctagtttcctcaca 651
|||||||| |||||| |||||||||||
Sbjct: 139246 ttcctacaaattttgctcgtttcctcaca 139218
Score = 83.8 bits (42), Expect = 2e-013
Identities = 96/114 (84%)
Strand = Plus / Minus
Query: 326 ttgtctccaatgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctg 385
|||||||||||||||| || |||||||| ||||||| |||| | |||||||||||| ||
Sbjct: 140557 ttgtctccaatgctgctgccaatccttccgtagataacatattagaaatgaaagagccta 140498
Query: 386 ttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattcagg 439
| || || || || ||||||||||| || ||||| ||||| |||||| ||||||
Sbjct: 140497 tccttgacaaactatgggatattaatgttaaggcatctattcttcttcttcagg 140444
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 183 gcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcggttgg 242
|||||||||||| |||||||||| | ||| |||||||| ||||| ||||||| || ||
Sbjct: 141926 gcagaagaacgtcgacgaggcggtcgtgggcctcagggcgaaggggatcaccgtcgtcgg 141867
Query: 243 tgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgagacggccgtcaa 302
| |||||||| |||||| | | |||||||||||| ||||||||| ||||| |||||
Sbjct: 141866 ggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcgacacggcggtcaa 141807
Query: 303 g 303
|
Sbjct: 141806 g 141806
Score = 65.9 bits (33), Expect = 4e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 457 cggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaacaagga 516
|||||||| ||||| ||||| | |||||||||||| |||| || |||||||||| || |
Sbjct: 140327 cggaagggatcatccgtgatattgatttcttcaattactggctataatccagaaccagca 140268
Query: 517 ttgacaatgtatggtgtcacaaagactgctctctttggtctcacgaagg 565
||| | ||||||| ||| ||||| ||||| || |||||||||| ||||
Sbjct: 140267 ttgtcgatgtatgctgttacaaaaactgccctgcttggtctcacaaagg 140219
Score = 44.1 bits (22), Expect = 0.14
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 314 acatagatattcttgtctccaatgctgccgcaaatcct 351
|||| |||||| |||||||||||||| | |||||||||
Sbjct: 140648 acattgatattgttgtctccaatgctactgcaaatcct 140611
>gb|CH401232.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000069 genomic
scaffold, whole genome shotgun sequence
Length = 1217354
Score = 163 bits (82), Expect = 2e-037
Identities = 121/134 (90%)
Strand = Plus / Minus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 1004276 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 1004217
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 1004216 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 1004157
Query: 170 tctcctcccgcaag 183
||||||||||||||
Sbjct: 1004156 tctcctcccgcaag 1004143
Score = 119 bits (60), Expect = 3e-024
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 694 cttaagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgac 753
||||||||||||||||||||||||||||||||||| || || ||||| |||| || |||
Sbjct: 999477 cttaagagattgggtactgtggaagacatggctgcagccgcagctttcttggcatcagac 999418
Query: 754 gacgcatcatacattacggctgaaaccattgttgttgctggagg 797
|| ||||||| |||||| |||||||| |||||||||||||||||
Sbjct: 999417 gatgcatcattcattacagctgaaactattgttgttgctggagg 999374
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 563 aggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggttttg 622
|||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 1001453 aggctcttgctgctgagatggggccaaatactcgtgttaactgtatagcccctggttttg 1001394
Query: 623 ttcctacacggtttgctagtttcctcaca 651
|||||||| |||||| |||||||||||
Sbjct: 1001393 ttcctacaaattttgctcgtttcctcaca 1001365
Score = 83.8 bits (42), Expect = 2e-013
Identities = 96/114 (84%)
Strand = Plus / Minus
Query: 326 ttgtctccaatgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctg 385
|||||||||||||||| || |||||||| ||||||| |||| | |||||||||||| ||
Sbjct: 1002704 ttgtctccaatgctgctgccaatccttccgtagataacatattagaaatgaaagagccta 1002645
Query: 386 ttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattcagg 439
| || || || || ||||||||||| || ||||| ||||| |||||| ||||||
Sbjct: 1002644 tccttgacaaactatgggatattaatgttaaggcatctattcttcttcttcagg 1002591
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 183 gcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcggttgg 242
|||||||||||| |||||||||| | ||| |||||||| ||||| ||||||| || ||
Sbjct: 1004073 gcagaagaacgtcgacgaggcggtcgtgggcctcagggcgaaggggatcaccgtcgtcgg 1004014
Query: 243 tgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgagacggccgtcaa 302
| |||||||| |||||| | | |||||||||||| ||||||||| ||||| |||||
Sbjct: 1004013 ggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcgacacggcggtcaa 1003954
Query: 303 g 303
|
Sbjct: 1003953 g 1003953
Score = 65.9 bits (33), Expect = 4e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 457 cggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaacaagga 516
|||||||| ||||| ||||| | |||||||||||| |||| || |||||||||| || |
Sbjct: 1002474 cggaagggatcatccgtgatattgatttcttcaattactggctataatccagaaccagca 1002415
Query: 517 ttgacaatgtatggtgtcacaaagactgctctctttggtctcacgaagg 565
||| | ||||||| ||| ||||| ||||| || |||||||||| ||||
Sbjct: 1002414 ttgtcgatgtatgctgttacaaaaactgccctgcttggtctcacaaagg 1002366
Score = 44.1 bits (22), Expect = 0.14
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 314 acatagatattcttgtctccaatgctgccgcaaatcct 351
|||| |||||| |||||||||||||| | |||||||||
Sbjct: 1002795 acattgatattgttgtctccaatgctactgcaaatcct 1002758
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 163 bits (82), Expect = 2e-037
Identities = 121/134 (90%)
Strand = Plus / Minus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 2036098 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 2036039
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 2036038 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 2035979
Query: 170 tctcctcccgcaag 183
||||||||||||||
Sbjct: 2035978 tctcctcccgcaag 2035965
Score = 119 bits (60), Expect = 3e-024
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 694 cttaagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgac 753
||||||||||||||||||||||||||||||||||| || || ||||| |||| || |||
Sbjct: 2031299 cttaagagattgggtactgtggaagacatggctgcagccgcagctttcttggcatcagac 2031240
Query: 754 gacgcatcatacattacggctgaaaccattgttgttgctggagg 797
|| ||||||| |||||| |||||||| |||||||||||||||||
Sbjct: 2031239 gatgcatcattcattacagctgaaactattgttgttgctggagg 2031196
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 563 aggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggttttg 622
|||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 2033275 aggctcttgctgctgagatggggccaaatactcgtgttaactgtatagcccctggttttg 2033216
Query: 623 ttcctacacggtttgctagtttcctcaca 651
|||||||| |||||| |||||||||||
Sbjct: 2033215 ttcctacaaattttgctcgtttcctcaca 2033187
Score = 83.8 bits (42), Expect = 2e-013
Identities = 96/114 (84%)
Strand = Plus / Minus
Query: 326 ttgtctccaatgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctg 385
|||||||||||||||| || |||||||| ||||||| |||| | |||||||||||| ||
Sbjct: 2034526 ttgtctccaatgctgctgccaatccttccgtagataacatattagaaatgaaagagccta 2034467
Query: 386 ttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattcagg 439
| || || || || ||||||||||| || ||||| ||||| |||||| ||||||
Sbjct: 2034466 tccttgacaaactatgggatattaatgttaaggcatctattcttcttcttcagg 2034413
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 183 gcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcggttgg 242
|||||||||||| |||||||||| | ||| |||||||| ||||| ||||||| || ||
Sbjct: 2035895 gcagaagaacgtcgacgaggcggtcgtgggcctcagggcgaaggggatcaccgtcgtcgg 2035836
Query: 243 tgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgagacggccgtcaa 302
| |||||||| |||||| | | |||||||||||| ||||||||| ||||| |||||
Sbjct: 2035835 ggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcgacacggcggtcaa 2035776
Query: 303 g 303
|
Sbjct: 2035775 g 2035775
Score = 65.9 bits (33), Expect = 4e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 457 cggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaacaagga 516
|||||||| ||||| ||||| | |||||||||||| |||| || |||||||||| || |
Sbjct: 2034296 cggaagggatcatccgtgatattgatttcttcaattactggctataatccagaaccagca 2034237
Query: 517 ttgacaatgtatggtgtcacaaagactgctctctttggtctcacgaagg 565
||| | ||||||| ||| ||||| ||||| || |||||||||| ||||
Sbjct: 2034236 ttgtcgatgtatgctgttacaaaaactgccctgcttggtctcacaaagg 2034188
Score = 44.1 bits (22), Expect = 0.14
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 314 acatagatattcttgtctccaatgctgccgcaaatcct 351
|||| |||||| |||||||||||||| | |||||||||
Sbjct: 2034617 acattgatattgttgtctccaatgctactgcaaatcct 2034580
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 163 bits (82), Expect = 2e-037
Identities = 121/134 (90%)
Strand = Plus / Minus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 2463719 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggcctcca 2463660
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 2463659 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 2463600
Query: 170 tctcctcccgcaag 183
||||||||||||||
Sbjct: 2463599 tctcctcccgcaag 2463586
Score = 119 bits (60), Expect = 3e-024
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 694 cttaagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgac 753
||||||||||||||||||||||||||||||||||| || || ||||| |||| || |||
Sbjct: 2459466 cttaagagattgggtactgtggaagacatggctgcagccgcagctttcttggcatcagac 2459407
Query: 754 gacgcatcatacattacggctgaaaccattgttgttgctggagg 797
|| ||||||| |||||| |||||||| |||||||||||||||||
Sbjct: 2459406 gatgcatcattcattacagctgaaactattgttgttgctggagg 2459363
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 563 aggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggttttg 622
|||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 2460896 aggctcttgctgctgagatggggccaaatactcgtgttaactgtatagcccctggttttg 2460837
Query: 623 ttcctacacggtttgctagtttcctcaca 651
|||||||| |||||| |||||||||||
Sbjct: 2460836 ttcctacaaattttgctcgtttcctcaca 2460808
Score = 83.8 bits (42), Expect = 2e-013
Identities = 96/114 (84%)
Strand = Plus / Minus
Query: 326 ttgtctccaatgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctg 385
|||||||||||||||| || |||||||| ||||||| |||| | |||||||||||| ||
Sbjct: 2462147 ttgtctccaatgctgctgccaatccttccgtagataacatattagaaatgaaagagccta 2462088
Query: 386 ttctcgataagctgtgggatattaacgtcaaggcttctatccttcttattcagg 439
| || || || || ||||||||||| || ||||| ||||| |||||| ||||||
Sbjct: 2462087 tccttgacaaactatgggatattaatgttaaggcatctattcttcttcttcagg 2462034
Score = 65.9 bits (33), Expect = 4e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 183 gcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcggttgg 242
|||||||||||| |||||||||| | ||| |||||||| ||||| ||||||| || ||
Sbjct: 2463516 gcagaagaacgtcgacgaggcggtcgtgggcctcagggcgaaggggatcaccgtcgtcgg 2463457
Query: 243 tgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgagacggccgtcaa 302
| |||||||| |||||| | | |||||||||||| ||||||||| ||||| |||||
Sbjct: 2463456 ggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcgacacggcggtcaa 2463397
Query: 303 g 303
|
Sbjct: 2463396 g 2463396
Score = 65.9 bits (33), Expect = 4e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 457 cggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaacaagga 516
|||||||| ||||| ||||| | |||||||||||| |||| || |||||||||| || |
Sbjct: 2461917 cggaagggatcatccgtgatattgatttcttcaattactggctataatccagaaccagca 2461858
Query: 517 ttgacaatgtatggtgtcacaaagactgctctctttggtctcacgaagg 565
||| | ||||||| ||| ||||| ||||| || |||||||||| ||||
Sbjct: 2461857 ttgtcgatgtatgctgttacaaaaactgccctgcttggtctcacaaagg 2461809
Score = 44.1 bits (22), Expect = 0.14
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 314 acatagatattcttgtctccaatgctgccgcaaatcct 351
|||| |||||| |||||||||||||| | |||||||||
Sbjct: 2462238 acattgatattgttgtctccaatgctactgcaaatcct 2462201
>gb|C91849.1|C91849 C91849 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31924_1A, mRNA sequence
Length = 460
Score = 155 bits (78), Expect = 5e-035
Identities = 121/134 (90%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtcca 109
|||||||||| || |||||||| || |||||||||||||| ||| |||||||||| ||||
Sbjct: 32 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtgacggc-tcca 90
Query: 110 cgatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtca 169
|| ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 91 cgcagggcatcggtctcgccatcgccgagcgcctcggcctcgagggcgccgccgtcgtca 150
Query: 170 tctcctcccgcaag 183
||||||||||||||
Sbjct: 151 tctcctcccgcaag 164
Score = 83.8 bits (42), Expect = 2e-013
Identities = 145/178 (81%), Gaps = 1/178 (0%)
Strand = Plus / Plus
Query: 183 gcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcggttgg 242
|||||||||||| |||||||||| | ||| |||||||| ||||| ||||||| || ||
Sbjct: 234 gcagaagaacgtcgacgaggcggtcgtgggcctcagggcgaaggggatcaccgtcgtcgg 293
Query: 243 tgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgagacggccgtcaa 302
| |||||||| |||||| | | |||||||||||| ||||||||| ||||| |||||
Sbjct: 294 ggtggtctgccatgtctccatcccggagcagcgcaagaacctcatcgacacggcggtcaa 353
Query: 303 gagctttgggcacatagatattcttgtctccaatgctgccgcaaatccttctgtagat 360
|| |||||||| || || || |||||||||||||||| | |||||||| ||||||
Sbjct: 354 ga-ttttgggcatatcgacatagttgtctccaatgctgcttccaatccttccgtagat 410
>gb|CF331415.1|CF331415 NACL--07-I14.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--07-I14, mRNA sequence
Length = 393
Score = 125 bits (63), Expect = 5e-026
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 655 aatgagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggtactgtg 714
||||| ||||||| || ||||||| || |||| || ||||||||||||||||||||||
Sbjct: 8 aatgacaccattaaaaatgagcttattgacaggagcacgcttaagagattgggtactgtg 67
Query: 715 gaagacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacattacggct 774
|||||||||||||| || || ||||| |||| || ||||| ||||||| |||||| |||
Sbjct: 68 gaagacatggctgcagccgcagctttcttggcatcagacgatgcatcattcattacagct 127
Query: 775 gaaaccattgttgttgctggagg 797
||||| |||||||||||||||||
Sbjct: 128 gaaactattgttgttgctggagg 150
>gb|AACV01019151.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019151,
whole genome shotgun sequence
Length = 20408
Score = 119 bits (60), Expect = 3e-024
Identities = 93/104 (89%)
Strand = Plus / Plus
Query: 694 cttaagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgac 753
||||||||||||||||||||||||||||||||||| || || ||||| |||| || |||
Sbjct: 664 cttaagagattgggtactgtggaagacatggctgcagccgcagctttcttggcatcagac 723
Query: 754 gacgcatcatacattacggctgaaaccattgttgttgctggagg 797
|| ||||||| |||||| |||||||| |||||||||||||||||
Sbjct: 724 gatgcatcattcattacagctgaaactattgttgttgctggagg 767
>gb|CF331416.1|CF331416 NACL--07-I14.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--07-I14, mRNA sequence
Length = 396
Score = 105 bits (53), Expect = 5e-020
Identities = 92/105 (87%)
Strand = Plus / Minus
Query: 693 gcttaagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtctga 752
|||||| |||||||||||||||||| |||||||||| | || |||||| |||| || ||
Sbjct: 322 gcttaaaagattgggtactgtggaaaacatggctgcaaccgcagcttttttggcatcaga 263
Query: 753 cgacgcatcatacattacggctgaaaccattgttgttgctggagg 797
||| ||||||| |||||| |||||||| |||||||||||||||||
Sbjct: 262 cgatgcatcattcattacagctgaaactattgttgttgctggagg 218
>gb|CV727976.1|CV727976 14Salt--06-G17.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--06-G17, mRNA sequence
Length = 179
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 50 cggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtga 100
|||||||||| || |||||||| || |||||||||||||| ||| ||||||
Sbjct: 129 cggcgatggaggtgaagtgccgtcggctggaggggaaggtagccgtcgtga 179
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0034A04
Length = 151263
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 71 ggcgtctggaggggaaggtggccatcgt 98
|||| |||||||||||||||||||||||
Sbjct: 28258 ggcggctggaggggaaggtggccatcgt 28231
>dbj|AK070356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050B21, full
insert sequence
Length = 1221
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 71 ggcgtctggaggggaaggtggccatcgt 98
|||| |||||||||||||||||||||||
Sbjct: 195 ggcggctggaggggaaggtggccatcgt 222
>gb|AACV01017061.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017061, whole
genome shotgun sequence
Length = 10712
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 71 ggcgtctggaggggaaggtggccatcgt 98
|||| |||||||||||||||||||||||
Sbjct: 9847 ggcggctggaggggaaggtggccatcgt 9874
>ref|XM_479614.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1221
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 71 ggcgtctggaggggaaggtggccatcgt 98
|||| |||||||||||||||||||||||
Sbjct: 195 ggcggctggaggggaaggtggccatcgt 222
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 71 ggcgtctggaggggaaggtggccatcgt 98
|||| |||||||||||||||||||||||
Sbjct: 16978341 ggcggctggaggggaaggtggccatcgt 16978314
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 71 ggcgtctggaggggaaggtggccatcgt 98
|||| |||||||||||||||||||||||
Sbjct: 14963448 ggcggctggaggggaaggtggccatcgt 14963421
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 71 ggcgtctggaggggaaggtggccatcgt 98
|||| |||||||||||||||||||||||
Sbjct: 28362887 ggcggctggaggggaaggtggccatcgt 28362860
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 71 ggcgtctggaggggaaggtggccatcgt 98
|||| |||||||||||||||||||||||
Sbjct: 29365336 ggcggctggaggggaaggtggccatcgt 29365309
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 125 tcgccatcgccgagcgcctcgg 146
||||||||||||||||||||||
Sbjct: 5842800 tcgccatcgccgagcgcctcgg 5842779
>gb|AACV01014833.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014833, whole
genome shotgun sequence
Length = 35037
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 125 tcgccatcgccgagcgcctcgg 146
||||||||||||||||||||||
Sbjct: 6158 tcgccatcgccgagcgcctcgg 6179
>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0661G04
Length = 157292
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 125 tcgccatcgccgagcgcctcgg 146
||||||||||||||||||||||
Sbjct: 89893 tcgccatcgccgagcgcctcgg 89872
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 125 tcgccatcgccgagcgcctcgg 146
||||||||||||||||||||||
Sbjct: 9772257 tcgccatcgccgagcgcctcgg 9772236
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 125 tcgccatcgccgagcgcctcgg 146
||||||||||||||||||||||
Sbjct: 27470994 tcgccatcgccgagcgcctcgg 27470973
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 125 tcgccatcgccgagcgcctcgg 146
||||||||||||||||||||||
Sbjct: 28377315 tcgccatcgccgagcgcctcgg 28377294
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,532,567
Number of Sequences: 438736
Number of extensions: 1532567
Number of successful extensions: 14578
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14240
Number of HSP's gapped (non-prelim): 309
length of query: 992
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 971
effective length of database: 2,791,206,460
effective search space: 2710261472660
effective search space used: 2710261472660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)