BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067267.2.1
(893 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK065017.1| Oryza sativa (japonica cultivar-group) cDNA... 799 0.0
dbj|AK069899.1| Oryza sativa (japonica cultivar-group) cDNA... 799 0.0
ref|NM_191983.1| Oryza sativa (japonica cultivar-group), p... 781 0.0
dbj|AK062045.1| Oryza sativa (japonica cultivar-group) cDNA... 543 e-152
gb|C73417.1|C73417 C73417 Rice panicle at flowering stage O... 351 4e-094
gb|CV720791.1|CV720791 YBH--01-N20.b1 Rice before heading y... 343 1e-091
gb|AU165692.1|AU165692 AU165692 Rice panicle at flowering s... 313 9e-083
gb|AU055909.1|AU055909 AU055909 Oryza sativa mature leaf Ni... 303 9e-080
dbj|AK058626.1| Oryza sativa (japonica cultivar-group) cDNA... 218 4e-054
dbj|AK102585.1| Oryza sativa (japonica cultivar-group) cDNA... 218 4e-054
gb|AACV01002092.1| Oryza sativa (japonica cultivar-group) c... 218 4e-054
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 218 4e-054
ref|NM_191297.1| Oryza sativa (japonica cultivar-group), p... 218 4e-054
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 218 4e-054
dbj|AP003223.3| Oryza sativa (japonica cultivar-group) geno... 218 4e-054
dbj|AP003264.3| Oryza sativa (japonica cultivar-group) geno... 218 4e-054
dbj|AB110177.1| Oryza sativa (japonica cultivar-group) mRNA... 218 4e-054
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 218 4e-054
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 218 4e-054
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 218 4e-054
dbj|AK105474.1| Oryza sativa (japonica cultivar-group) cDNA... 210 1e-051
gb|AQ860702.1|AQ860702 nbeb0015H05f CUGI Rice BAC Library (... 151 8e-034
gb|AQ863933.1|AQ863933 nbeb0022C08r CUGI Rice BAC Library (... 121 7e-025
gb|BP184575.1|BP184575 BP184575 pNS rice panicle cDNA, flow... 121 7e-025
gb|AU091713.1|AU091713 AU091713 Rice mature leaf Oryza sati... 107 1e-020
gb|AACV01002374.1| Oryza sativa (japonica cultivar-group) c... 105 4e-020
dbj|AP003375.2| Oryza sativa (japonica cultivar-group) geno... 105 4e-020
gb|AZ129984.1|AZ129984 OSJNBb0080N12r CUGI Rice BAC Library... 98 1e-017
gb|AU032108.1|AU032108 AU032108 Rice root Oryza sativa (jap... 80 2e-012
gb|CB640836.1|CB640836 OSJNEa16J19.f OSJNEa Oryza sativa (j... 74 1e-010
dbj|AK066938.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-010
gb|AC148339.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|AACV01006579.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 74 1e-010
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|AU095526.1|AU095526 AU095526 Rice root Oryza sativa (jap... 62 5e-007
dbj|AK106344.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.008
gb|AACV01009985.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
ref|XM_472891.1| Oryza sativa (japonica cultivar-group), p... 48 0.008
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 48 0.008
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromoso... 48 0.008
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 48 0.008
gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-grou... 46 0.033
gb|AACV01021652.1| Oryza sativa (japonica cultivar-group) c... 46 0.033
ref|NM_196705.1| Oryza sativa (japonica cultivar-group) put... 46 0.033
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 46 0.033
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.033
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.033
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 46 0.033
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.033
gb|AU181330.1|AU181330 AU181330 Rice callus (2001) Oryza sa... 44 0.13
gb|CB641563.1|CB641563 OSJNEb01E11.f OSJNEb Oryza sativa (j... 44 0.13
gb|CB652698.1|CB652698 OSJNEc02P15.f OSJNEc Oryza sativa (j... 44 0.13
gb|CB655348.1|CB655348 OSJNEc08K13.f OSJNEc Oryza sativa (j... 44 0.13
gb|CB655606.1|CB655606 OSJNEc09D02.f OSJNEc Oryza sativa (j... 44 0.13
gb|CB657426.1|CB657426 OSJNEc12L21.f OSJNEc Oryza sativa (j... 44 0.13
gb|CB657427.1|CB657427 OSJNEc12L21.r OSJNEc Oryza sativa (j... 44 0.13
gb|CF326563.1|CF326563 JMT1--06-G12.g1 AtJMT-overexpressing... 44 0.13
dbj|AB070253.1| Oryza sativa (japonica cultivar-group) OsRP... 44 0.13
dbj|AK059237.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.13
dbj|AK071476.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.13
dbj|AP004789.3| Oryza sativa (japonica cultivar-group) geno... 44 0.13
gb|AACV01004073.1| Oryza sativa (japonica cultivar-group) c... 44 0.13
ref|XM_465282.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.13
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 44 0.13
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.13
>dbj|AK065017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F15, full
insert sequence
Length = 1627
Score = 799 bits (403), Expect = 0.0
Identities = 661/747 (88%)
Strand = Plus / Plus
Query: 19 tatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagacaatgctag 78
|||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 576 tatcaccttggaaaggtatattgctttttggtccaccaggaacaggaaagacaatgctag 635
Query: 79 ctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcgtcgattg 138
| ||||||||||||||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 636 caaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcagcctcatcaattg 695
Query: 139 taagcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggc 198
| || || ||||| ||||| |||||||||||||||||||| ||||| || ||||||||||
Sbjct: 696 tcagtaaatggcgtggtgattcggagaaactagtgaaagtcttatttgagcttgcaaggc 755
Query: 199 atcatgcaccatctactattttccttgatgagattgatgctatcattagtcaacgtggtg 258
||||||||||||| || ||||| || ||||||||||||||||| ||||| ||||||||||
Sbjct: 756 atcatgcaccatccaccatttttctcgatgagattgatgctattattagccaacgtggtg 815
Query: 259 aagctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaatacagatgg 318
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 816 aagctcgtagtgaacatgaagccagtcggcgattgaagactgagctattaatacagatgg 875
Query: 319 atgggttgactaagacagatgagcttgtttttgttctagcagcaacaaatttaccatggg 378
||||||| |||||||||||||| || |||||||||||||| || |||||||| |||||||
Sbjct: 876 atgggttaactaagacagatgatctcgtttttgttctagccgccacaaatttgccatggg 935
Query: 379 agttggatgcagcaatgctgcgtcggctggagaagcgtattcttgttccattgccagagc 438
| |||||||||||||| |||| || ||||||| |||||||||||||| || |||||||
Sbjct: 936 aactggatgcagcaatgttgcgccgtttggagaaacgtattcttgttcccttaccagagc 995
Query: 439 cggatgctagacatgctatgtttgaagagctcctgccatatacacctggcacaatggaga 498
|| ||||||||||| ||||||||||||||| |||||| | |||||||||||| | |
Sbjct: 996 aagaagctagacatgccatgtttgaagagctcttgccatctgttcctggcacaatgaata 1055
Query: 499 ttccctatgatgttcttgtggagaaaactgaaggatattctggctctgatattcgcctgg 558
| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct: 1056 tcccatatgatgttcttgtggagaaaactgaaggatattcaggctctgatatacgccttg 1115
Query: 559 tatgcaaggaagcagcaatgcagcccctaagacgggtaatggcagttcttgaaggcagga 618
| |||||||| || |||||||| ||||| ||| || ||||| | ||||||||||| |||
Sbjct: 1116 tgtgcaaggaggcggcaatgcaaccccttagaaggttaatgtcggttcttgaaggaaggc 1175
Query: 619 aagaagaggtccctgagggtgagttgcctgaagttggcccagtaactacagaagatattg 678
||||||| || ||||||| |||||||||||||||||| |||||||| |||||||| ||||
Sbjct: 1176 aagaagaagtgcctgaggatgagttgcctgaagttggtccagtaacgacagaagacattg 1235
Query: 679 aacttgctttgaggaatacaagaccgtctgctcatcttcatgcacatagatacgaaaagt 738
| ||||| | ||||||||| | || |||||||||||||||| ||||||||||||||| |
Sbjct: 1236 agcttgcactaaggaatacacggccatctgctcatcttcatgtacatagatacgaaaaat 1295
Query: 739 tcaaccaagattatggcagtcatgtcc 765
|||| ||||| ||||||||||||||||
Sbjct: 1296 tcaatcaagactatggcagtcatgtcc 1322
>dbj|AK069899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035A18, full
insert sequence
Length = 1676
Score = 799 bits (403), Expect = 0.0
Identities = 661/747 (88%)
Strand = Plus / Plus
Query: 19 tatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagacaatgctag 78
|||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 607 tatcaccttggaaaggtatattgctttttggtccaccaggaacaggaaagacaatgctag 666
Query: 79 ctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcgtcgattg 138
| ||||||||||||||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 667 caaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcagcctcatcaattg 726
Query: 139 taagcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggc 198
| || || ||||| ||||| |||||||||||||||||||| ||||| || ||||||||||
Sbjct: 727 tcagtaaatggcgtggtgattcggagaaactagtgaaagtcttatttgagcttgcaaggc 786
Query: 199 atcatgcaccatctactattttccttgatgagattgatgctatcattagtcaacgtggtg 258
||||||||||||| || ||||| || ||||||||||||||||| ||||| ||||||||||
Sbjct: 787 atcatgcaccatccaccatttttctcgatgagattgatgctattattagccaacgtggtg 846
Query: 259 aagctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaatacagatgg 318
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 847 aagctcgtagtgaacatgaagccagtcggcgattgaagactgagctattaatacagatgg 906
Query: 319 atgggttgactaagacagatgagcttgtttttgttctagcagcaacaaatttaccatggg 378
||||||| |||||||||||||| || |||||||||||||| || |||||||| |||||||
Sbjct: 907 atgggttaactaagacagatgatctcgtttttgttctagccgccacaaatttgccatggg 966
Query: 379 agttggatgcagcaatgctgcgtcggctggagaagcgtattcttgttccattgccagagc 438
| |||||||||||||| |||| || ||||||| |||||||||||||| || |||||||
Sbjct: 967 aactggatgcagcaatgttgcgccgtttggagaaacgtattcttgttcccttaccagagc 1026
Query: 439 cggatgctagacatgctatgtttgaagagctcctgccatatacacctggcacaatggaga 498
|| ||||||||||| ||||||||||||||| |||||| | |||||||||||| | |
Sbjct: 1027 aagaagctagacatgccatgtttgaagagctcttgccatctgttcctggcacaatgaata 1086
Query: 499 ttccctatgatgttcttgtggagaaaactgaaggatattctggctctgatattcgcctgg 558
| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct: 1087 tcccatatgatgttcttgtggagaaaactgaaggatattcaggctctgatatacgccttg 1146
Query: 559 tatgcaaggaagcagcaatgcagcccctaagacgggtaatggcagttcttgaaggcagga 618
| |||||||| || |||||||| ||||| ||| || ||||| | ||||||||||| |||
Sbjct: 1147 tgtgcaaggaggcggcaatgcaaccccttagaaggttaatgtcggttcttgaaggaaggc 1206
Query: 619 aagaagaggtccctgagggtgagttgcctgaagttggcccagtaactacagaagatattg 678
||||||| || ||||||| |||||||||||||||||| |||||||| |||||||| ||||
Sbjct: 1207 aagaagaagtgcctgaggatgagttgcctgaagttggtccagtaacgacagaagacattg 1266
Query: 679 aacttgctttgaggaatacaagaccgtctgctcatcttcatgcacatagatacgaaaagt 738
| ||||| | ||||||||| | || |||||||||||||||| ||||||||||||||| |
Sbjct: 1267 agcttgcactaaggaatacacggccatctgctcatcttcatgtacatagatacgaaaaat 1326
Query: 739 tcaaccaagattatggcagtcatgtcc 765
|||| ||||| ||||||||||||||||
Sbjct: 1327 tcaatcaagactatggcagtcatgtcc 1353
>ref|NM_191983.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1236
Score = 781 bits (394), Expect = 0.0
Identities = 661/749 (88%), Gaps = 2/749 (0%)
Strand = Plus / Plus
Query: 19 tatcaccttggaaaggcatattactgtttggtccacctggaacaggaaaga--caatgct 76
|||||||||||||||| ||||| || ||||||||||| ||||||||||||| |||||||
Sbjct: 480 tatcaccttggaaaggtatattgctttttggtccaccaggaacaggaaagagacaatgct 539
Query: 77 agctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcgtcgat 136
||| ||||||||||||||||||||||||||||| || ||||||||||| ||||| || ||
Sbjct: 540 agcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcagcctcatcaat 599
Query: 137 tgtaagcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaacttgcaag 196
||| || || ||||| ||||| |||||||||||||||||||| ||||| || ||||||||
Sbjct: 600 tgtcagtaaatggcgtggtgattcggagaaactagtgaaagtcttatttgagcttgcaag 659
Query: 197 gcatcatgcaccatctactattttccttgatgagattgatgctatcattagtcaacgtgg 256
||||||||||||||| || ||||| || ||||||||||||||||| ||||| ||||||||
Sbjct: 660 gcatcatgcaccatccaccatttttctcgatgagattgatgctattattagccaacgtgg 719
Query: 257 tgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaatacagat 316
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 720 tgaagctcgtagtgaacatgaagccagtcggcgattgaagactgagctattaatacagat 779
Query: 317 ggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaatttaccatg 376
||||||||| |||||||||||||| || |||||||||||||| || |||||||| |||||
Sbjct: 780 ggatgggttaactaagacagatgatctcgtttttgttctagccgccacaaatttgccatg 839
Query: 377 ggagttggatgcagcaatgctgcgtcggctggagaagcgtattcttgttccattgccaga 436
||| |||||||||||||| |||| || ||||||| |||||||||||||| || |||||
Sbjct: 840 ggaactggatgcagcaatgttgcgccgtttggagaaacgtattcttgttcccttaccaga 899
Query: 437 gccggatgctagacatgctatgtttgaagagctcctgccatatacacctggcacaatgga 496
|| || ||||||||||| ||||||||||||||| |||||| | |||||||||||| |
Sbjct: 900 gcaagaagctagacatgccatgtttgaagagctcttgccatctgttcctggcacaatgaa 959
Query: 497 gattccctatgatgttcttgtggagaaaactgaaggatattctggctctgatattcgcct 556
|| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 960 tatcccatatgatgttcttgtggagaaaactgaaggatattcaggctctgatatacgcct 1019
Query: 557 ggtatgcaaggaagcagcaatgcagcccctaagacgggtaatggcagttcttgaaggcag 616
|| |||||||| || |||||||| ||||| ||| || ||||| | ||||||||||| ||
Sbjct: 1020 tgtgtgcaaggaggcggcaatgcaaccccttagaaggttaatgtcggttcttgaaggaag 1079
Query: 617 gaaagaagaggtccctgagggtgagttgcctgaagttggcccagtaactacagaagatat 676
| ||||||| || ||||||| |||||||||||||||||| |||||||| |||||||| ||
Sbjct: 1080 gcaagaagaagtgcctgaggatgagttgcctgaagttggtccagtaacgacagaagacat 1139
Query: 677 tgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacatagatacgaaaa 736
||| ||||| | ||||||||| | || |||||||||||||||| |||||||||||||||
Sbjct: 1140 tgagcttgcactaaggaatacacggccatctgctcatcttcatgtacatagatacgaaaa 1199
Query: 737 gttcaaccaagattatggcagtcatgtcc 765
||||| ||||| ||||||||||||||||
Sbjct: 1200 attcaatcaagactatggcagtcatgtcc 1228
>dbj|AK062045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A09, full
insert sequence
Length = 837
Score = 543 bits (274), Expect = e-152
Identities = 466/530 (87%)
Strand = Plus / Plus
Query: 236 tgctatcattagtcaacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaa 295
|||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 1 tgctattattagccaacgtggtgaagctcgtagtgaacatgaagccagtcggcgattgaa 60
Query: 296 aactgagctattaatacagatggatgggttgactaagacagatgagcttgtttttgttct 355
||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct: 61 gactgagctattaatacagatggatgggttaactaagacagatgatctcgtttttgttct 120
Query: 356 agcagcaacaaatttaccatgggagttggatgcagcaatgctgcgtcggctggagaagcg 415
||| || |||||||| |||||||| |||||||||||||| |||| || ||||||| ||
Sbjct: 121 agccgccacaaatttgccatgggaactggatgcagcaatgttgcgccgtttggagaaacg 180
Query: 416 tattcttgttccattgccagagccggatgctagacatgctatgtttgaagagctcctgcc 475
|||||||||||| || ||||||| || ||||||||||| ||||||||||||||| ||||
Sbjct: 181 tattcttgttcccttaccagagcaagaagctagacatgccatgtttgaagagctcttgcc 240
Query: 476 atatacacctggcacaatggagattccctatgatgttcttgtggagaaaactgaaggata 535
|| | |||||||||||| | || || ||||||||||||||||||||||||||||||||
Sbjct: 241 atctgttcctggcacaatgaatatcccatatgatgttcttgtggagaaaactgaaggata 300
Query: 536 ttctggctctgatattcgcctggtatgcaaggaagcagcaatgcagcccctaagacgggt 595
||| ||||||||||| ||||| || |||||||| || |||||||| ||||| ||| || |
Sbjct: 301 ttcaggctctgatatacgccttgtgtgcaaggaggcggcaatgcaaccccttagaaggtt 360
Query: 596 aatggcagttcttgaaggcaggaaagaagaggtccctgagggtgagttgcctgaagttgg 655
|||| | ||||||||||| ||| ||||||| || ||||||| ||||||||||||||||||
Sbjct: 361 aatgccggttcttgaaggaaggcaagaagaagtgcctgaggatgagttgcctgaagttgg 420
Query: 656 cccagtaactacagaagatattgaacttgctttgaggaatacaagaccgtctgctcatct 715
|||||||| |||||||| ||||| ||||| | ||||||||| | || |||||||||||
Sbjct: 421 tccagtaacgacagaagacattgagcttgcactaaggaatacacggccatctgctcatct 480
Query: 716 tcatgcacatagatacgaaaagttcaaccaagattatggcagtcatgtcc 765
||||| ||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 481 tcatgtacatagatacgaaaaattcaatcaagactatggcagtcatgtcc 530
>gb|C73417.1|C73417 C73417 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4070_1A, mRNA sequence
Length = 458
Score = 351 bits (177), Expect = 4e-094
Identities = 330/381 (86%)
Strand = Plus / Plus
Query: 385 atgcagcaatgctgcgtcggctggagaagcgtattcttgttccattgccagagccggatg 444
||||||||||| |||| || ||||||| |||||||||||||| || ||||||| || |
Sbjct: 5 atgcagcaatgttgcgccgtttggagaaacgtattcttgttcccttaccagagcaagaag 64
Query: 445 ctagacatgctatgtttgaagagctcctgccatatacacctggcacaatggagattccct 504
|||||||||| ||||||||||||||| |||||| | |||||||||||| | || || |
Sbjct: 65 ctagacatgccatgtttgaagagctcttgccatctgttcctggcacaatgaatatcccat 124
Query: 505 atgatgttcttgtggagaaaactgaaggatattctggctctgatattcgcctggtatgca 564
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||
Sbjct: 125 atgatgttcttgtggagaaaactgaaggatattcaggctctgatatacgccttgtgtgca 184
Query: 565 aggaagcagcaatgcagcccctaagacgggtaatggcagttcttgaaggcaggaaagaag 624
|||| || |||||||| ||||| ||| || ||||| | ||||||||||| ||| ||||||
Sbjct: 185 aggaggcggcaatgcaaccccttagaaggttaatgtcggttcttgaaggaaggcaagaag 244
Query: 625 aggtccctgagggtgagttgcctgaagttggcccagtaactacagaagatattgaacttg 684
| || ||||||| |||||||||||||||||| |||||||| |||||||| ||||| ||||
Sbjct: 245 aagtgcctgaggatgagttgcctgaagttggtccagtaacgacagaagacattgagcttg 304
Query: 685 ctttgaggaatacaagaccgtctgctcatcttcatgcacatagatacgaaaagttcaacc 744
| | ||||||||| | || |||||||||||||||| ||||||||||||||| ||||| |
Sbjct: 305 cactaaggaatacacggccatctgctcatcttcatgtacatagatacgaaaaattcaatc 364
Query: 745 aagattatggcagtcatgtcc 765
|||| ||||||||||||||||
Sbjct: 365 aagactatggcagtcatgtcc 385
>gb|CV720791.1|CV720791 YBH--01-N20.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--01-N20, mRNA sequence
Length = 454
Score = 343 bits (173), Expect = 1e-091
Identities = 321/369 (86%), Gaps = 1/369 (0%)
Strand = Plus / Plus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
|||||||||||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 82 cagatggatgggttaactaagacagatgatctcgtttttgttctagccgccacaaatttg 141
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaagcgtattcttgttccattg 431
|||||||| |||||||||||||| |||| || ||||||| |||||||||||||| ||
Sbjct: 142 ccatgggaactggatgcagcaatgttgcgccgtttggagaaacgtattcttgttccctta 201
Query: 432 ccagagccggatgctagacatgctatgtttgaagagctcctgccatatacacctggcaca 491
||||||| || ||||||||||| ||||||||||||||| |||||| | |||||||||
Sbjct: 202 ccagagcaagaagctagacatgccatgtttgaagagctcttgccatctgttcctggcaca 261
Query: 492 atggagattccctatgatgttcttgtggagaaaactgaaggatattctggctctgatatt 551
||| | || || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 262 atgaatatcccatatgatgttcttgtggagaaaactgaaggatattcaggctctgatata 321
Query: 552 cgcctggtatgcaaggaagcagcaatgcagcccctaagacgggtaatgg-cagttcttga 610
||||| || |||||||| || |||||||| ||||| ||| || |||||| | ||||||||
Sbjct: 322 cgccttgtgtgcaaggaggcggcaatgcaaccccttagaaggttaatggtcggttcttga 381
Query: 611 aggcaggaaagaagaggtccctgagggtgagttgcctgaagttggcccagtaactacaga 670
||| ||| ||||||| || ||||||| |||||||||||||||||| |||||||| |||||
Sbjct: 382 aggaaggcaagaagaagtgcctgaggatgagttgcctgaagttggtccagtaacgacaga 441
Query: 671 agatattga 679
||| |||||
Sbjct: 442 agacattga 450
>gb|AU165692.1|AU165692 AU165692 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4070, mRNA sequence
Length = 685
Score = 313 bits (158), Expect = 9e-083
Identities = 281/322 (87%)
Strand = Plus / Plus
Query: 444 gctagacatgctatgtttgaagagctcctgccatatacacctggcacaatggagattccc 503
||||||||||| ||||||||||||||| |||||| | |||||||||||| | || ||
Sbjct: 61 gctagacatgccatgtttgaagagctcttgccatctgttcctggcacaatgaatatccca 120
Query: 504 tatgatgttcttgtggagaaaactgaaggatattctggctctgatattcgcctggtatgc 563
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 121 tatgatgttcttgtggagaaaactgaaggatattcaggctctgatatacgccttgtgtgc 180
Query: 564 aaggaagcagcaatgcagcccctaagacgggtaatggcagttcttgaaggcaggaaagaa 623
||||| || |||||||| ||||| ||| || ||||| | ||||||||||| ||| |||||
Sbjct: 181 aaggaggcggcaatgcaaccccttagaaggttaatgtcggttcttgaaggaaggcaagaa 240
Query: 624 gaggtccctgagggtgagttgcctgaagttggcccagtaactacagaagatattgaactt 683
|| || ||||||| |||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct: 241 gaagtgcctgaggatgagttgcctgaagttggtccagtaacgacagaagacattgagctt 300
Query: 684 gctttgaggaatacaagaccgtctgctcatcttcatgcacatagatacgaaaagttcaac 743
|| | ||||||||| | || |||||||||||||||| ||||||||||||||| |||||
Sbjct: 301 gcactaaggaatacacggccatctgctcatcttcatgtacatagatacgaaaaattcaat 360
Query: 744 caagattatggcagtcatgtcc 765
||||| ||||||||||||||||
Sbjct: 361 caagactatggcagtcatgtcc 382
>gb|AU055909.1|AU055909 AU055909 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S20142_2Z, mRNA sequence
Length = 711
Score = 303 bits (153), Expect = 9e-080
Identities = 276/317 (87%)
Strand = Plus / Plus
Query: 449 acatgctatgtttgaagagctcctgccatatacacctggcacaatggagattccctatga 508
|||||| ||||||||||||||| |||||| | |||||||||||| | || || |||||
Sbjct: 49 acatgccatgtttgaagagctcttgccatctgttcctggcacaatgaatatcccatatga 108
Query: 509 tgttcttgtggagaaaactgaaggatattctggctctgatattcgcctggtatgcaagga 568
|||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||
Sbjct: 109 tgttcttgtggagaaaactgaaggatattcaggctctgatatacgccttgtgtgcaagga 168
Query: 569 agcagcaatgcagcccctaagacgggtaatggcagttcttgaaggcaggaaagaagaggt 628
|| |||||||| ||||| ||| || ||||| | ||||||||||| ||| ||||||| ||
Sbjct: 169 ggcggcaatgcaaccccttagaaggttaatgtcggttcttgaaggaaggcaagaagaagt 228
Query: 629 ccctgagggtgagttgcctgaagttggcccagtaactacagaagatattgaacttgcttt 688
||||||| |||||||||||||||||| |||||||| |||||||| ||||| ||||| |
Sbjct: 229 gcctgaggatgagttgcctgaagttggtccagtaacgacagaagacattgagcttgcact 288
Query: 689 gaggaatacaagaccgtctgctcatcttcatgcacatagatacgaaaagttcaaccaaga 748
||||||||| | || |||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct: 289 aaggaatacacggccatctgctcatcttcatgtacatagatacgaaaaattcaatcaaga 348
Query: 749 ttatggcagtcatgtcc 765
||||||||||||||||
Sbjct: 349 ctatggcagtcatgtcc 365
>dbj|AK058626.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C03, full
insert sequence
Length = 1393
Score = 218 bits (110), Expect = 4e-054
Identities = 335/410 (81%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
||||| || ||||| ||||||||||| ||||| |||||||| || ||||| || ||||||
Sbjct: 483 ggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaactgggaagaca 542
Query: 72 atgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcg 131
||||| || || ||||| ||||||||||| ||||| || || ||||| ||||| || ||
Sbjct: 543 atgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcagcatca 602
Query: 132 tcgattgtaagcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaactt 191
|| ||||| ||||| ||||| || || || ||||| ||||| ||||| | || || |||
Sbjct: 603 tcaattgttagcaaatggcgtggggattcagagaagctagttaaagttctgtttgagctt 662
Query: 192 gcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagtcaa 251
|| || |||||||||||||| || || || |||||||| ||||||||||| || || |||
Sbjct: 663 gctagacatcatgcaccatcgacaatatttcttgatgaaattgatgctattatcagccaa 722
Query: 252 cgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaata 311
|||||||||||||| ||||| ||||||||||| || || ||||| ||||||||| | ||
Sbjct: 723 cgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagactgagctactcatt 782
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| ||||| | || | || ||||| || |||||||||||||||
Sbjct: 783 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 842
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaagcgtattct 421
|| ||||| |||| ||||| ||||| || ||||| ||||| || |||||
Sbjct: 843 ccttgggaactggacgcagctatgctccgccggcttgagaaacggattct 892
Score = 61.9 bits (31), Expect = 5e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||| || ||| ||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct: 1140 gaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgc 1199
Query: 729 tacgaaaagttcaaccaagatta 751
|| || ||||| ||||| |||||
Sbjct: 1200 tatgagaagtttaaccaggatta 1222
Score = 44.1 bits (22), Expect = 0.13
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 519 gagaaaactgaaggatattctggctctgatattcgcctggtatgcaaggaagcagcaatg 578
||||| |||||||| || ||||| || ||||| || || || ||||| ||||| || |||
Sbjct: 990 gagaagactgaagggtactctggttcagatatccgtcttgtgtgcaaagaagctgccatg 1049
Query: 579 cagcccctaagacgggtaatggcagttcttgaag 612
|| || |||||||| | ||| ||||||||||||
Sbjct: 1050 caaccactaagacgtcttatgtcagttcttgaag 1083
>dbj|AK102585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098E22, full
insert sequence
Length = 1635
Score = 218 bits (110), Expect = 4e-054
Identities = 335/410 (81%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
||||| || ||||| ||||||||||| ||||| |||||||| || ||||| || ||||||
Sbjct: 725 ggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaactgggaagaca 784
Query: 72 atgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcg 131
||||| || || ||||| ||||||||||| ||||| || || ||||| ||||| || ||
Sbjct: 785 atgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcagcatca 844
Query: 132 tcgattgtaagcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaactt 191
|| ||||| ||||| ||||| || || || ||||| ||||| ||||| | || || |||
Sbjct: 845 tcaattgttagcaaatggcgtggggattcagagaagctagttaaagttctgtttgagctt 904
Query: 192 gcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagtcaa 251
|| || |||||||||||||| || || || |||||||| ||||||||||| || || |||
Sbjct: 905 gctagacatcatgcaccatcgacaatatttcttgatgaaattgatgctattatcagccaa 964
Query: 252 cgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaata 311
|||||||||||||| ||||| ||||||||||| || || ||||| ||||||||| | ||
Sbjct: 965 cgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagactgagctactcatt 1024
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| ||||| | || | || ||||| || |||||||||||||||
Sbjct: 1025 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 1084
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaagcgtattct 421
|| ||||| |||| ||||| ||||| || ||||| ||||| || |||||
Sbjct: 1085 ccttgggaactggacgcagctatgctccgccggcttgagaaacggattct 1134
Score = 61.9 bits (31), Expect = 5e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||| || ||| ||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct: 1382 gaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgc 1441
Query: 729 tacgaaaagttcaaccaagatta 751
|| || ||||| ||||| |||||
Sbjct: 1442 tatgagaagtttaaccaggatta 1464
Score = 44.1 bits (22), Expect = 0.13
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 519 gagaaaactgaaggatattctggctctgatattcgcctggtatgcaaggaagcagcaatg 578
||||| |||||||| || ||||| || ||||| || || || ||||| ||||| || |||
Sbjct: 1232 gagaagactgaagggtactctggttcagatatccgtcttgtgtgcaaagaagctgccatg 1291
Query: 579 cagcccctaagacgggtaatggcagttcttgaag 612
|| || |||||||| | ||| ||||||||||||
Sbjct: 1292 caaccactaagacgtcttatgtcagttcttgaag 1325
>gb|AACV01002092.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002092, whole
genome shotgun sequence
Length = 25972
Score = 218 bits (110), Expect = 4e-054
Identities = 149/162 (91%)
Strand = Plus / Minus
Query: 153 ggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatct 212
||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 11994 ggtgattcggagaaactagtgaaagtcttatttgagcttgcaaggcatcatgcaccatcc 11935
Query: 213 actattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaa 272
|| ||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 11934 accatttttctcgatgagattgatgctattattagccaacgtggtgaagctcgtagtgaa 11875
Query: 273 catgaagctagccggcgattgaaaactgagctattaatacag 314
|||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 11874 catgaagccagtcggcgattgaagactgagctattaatacag 11833
Score = 190 bits (96), Expect = 9e-046
Identities = 189/220 (85%)
Strand = Plus / Minus
Query: 417 attcttgttccattgccagagccggatgctagacatgctatgtttgaagagctcctgcca 476
||||||||||| || ||||||| || ||||||||||| ||||||||||||||| |||||
Sbjct: 10597 attcttgttcccttaccagagcaagaagctagacatgccatgtttgaagagctcttgcca 10538
Query: 477 tatacacctggcacaatggagattccctatgatgttcttgtggagaaaactgaaggatat 536
| | |||||||||||| | || || |||||||||||||||||||||||||||||||||
Sbjct: 10537 tctgttcctggcacaatgaatatcccatatgatgttcttgtggagaaaactgaaggatat 10478
Query: 537 tctggctctgatattcgcctggtatgcaaggaagcagcaatgcagcccctaagacgggta 596
|| ||||||||||| ||||| || |||||||| || |||||||| ||||| ||| || ||
Sbjct: 10477 tcaggctctgatatacgccttgtgtgcaaggaggcggcaatgcaaccccttagaaggtta 10418
Query: 597 atggcagttcttgaaggcaggaaagaagaggtccctgagg 636
||| | ||||||||||| ||| ||||||| || |||||||
Sbjct: 10417 atgtcggttcttgaaggaaggcaagaagaagtgcctgagg 10378
Score = 141 bits (71), Expect = 7e-031
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 639 gagttgcctgaagttggcccagtaactacagaagatattgaacttgctttgaggaataca 698
||||||||||||||||| |||||||| |||||||| ||||| ||||| | |||||||||
Sbjct: 9830 gagttgcctgaagttggtccagtaacgacagaagacattgagcttgcactaaggaataca 9771
Query: 699 agaccgtctgctcatcttcatgcacatagatacgaaaagttcaaccaagattatggcagt 758
| || |||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||
Sbjct: 9770 cggccatctgctcatcttcatgtacatagatacgaaaaattcaatcaagactatggcagt 9711
Query: 759 catgtcc 765
|||||||
Sbjct: 9710 catgtcc 9704
Score = 105 bits (53), Expect = 4e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
|||||||||||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 11423 cagatggatgggttaactaagacagatgatctcgtttttgttctagccgccacaaatttg 11364
Query: 372 ccatgggagttggatgcagcaatgctgcg 400
|||||||| |||||||||||||| ||||
Sbjct: 11363 ccatgggaactggatgcagcaatgttgcg 11335
Score = 97.6 bits (49), Expect = 1e-017
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 13037 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 12978
Query: 127 cctcgtcgattgt 139
|||| || |||||
Sbjct: 12977 cctcatcaattgt 12965
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 19 tatcaccttggaaaggcatattactgtttggtccacctggaacaggaaag 68
|||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 13702 tatcaccttggaaaggtatattgctttttggtccaccaggaacaggaaag 13653
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 218 bits (110), Expect = 4e-054
Identities = 149/162 (91%)
Strand = Plus / Minus
Query: 153 ggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatct 212
||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 27736559 ggtgattcggagaaactagtgaaagtcttatttgagcttgcaaggcatcatgcaccatcc 27736500
Query: 213 actattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaa 272
|| ||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 27736499 accatttttctcgatgagattgatgctattattagccaacgtggtgaagctcgtagtgaa 27736440
Query: 273 catgaagctagccggcgattgaaaactgagctattaatacag 314
|||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 27736439 catgaagccagtcggcgattgaagactgagctattaatacag 27736398
Score = 190 bits (96), Expect = 9e-046
Identities = 189/220 (85%)
Strand = Plus / Minus
Query: 417 attcttgttccattgccagagccggatgctagacatgctatgtttgaagagctcctgcca 476
||||||||||| || ||||||| || ||||||||||| ||||||||||||||| |||||
Sbjct: 27735162 attcttgttcccttaccagagcaagaagctagacatgccatgtttgaagagctcttgcca 27735103
Query: 477 tatacacctggcacaatggagattccctatgatgttcttgtggagaaaactgaaggatat 536
| | |||||||||||| | || || |||||||||||||||||||||||||||||||||
Sbjct: 27735102 tctgttcctggcacaatgaatatcccatatgatgttcttgtggagaaaactgaaggatat 27735043
Query: 537 tctggctctgatattcgcctggtatgcaaggaagcagcaatgcagcccctaagacgggta 596
|| ||||||||||| ||||| || |||||||| || |||||||| ||||| ||| || ||
Sbjct: 27735042 tcaggctctgatatacgccttgtgtgcaaggaggcggcaatgcaaccccttagaaggtta 27734983
Query: 597 atggcagttcttgaaggcaggaaagaagaggtccctgagg 636
||| | ||||||||||| ||| ||||||| || |||||||
Sbjct: 27734982 atgtcggttcttgaaggaaggcaagaagaagtgcctgagg 27734943
Score = 141 bits (71), Expect = 7e-031
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 639 gagttgcctgaagttggcccagtaactacagaagatattgaacttgctttgaggaataca 698
||||||||||||||||| |||||||| |||||||| ||||| ||||| | |||||||||
Sbjct: 27734395 gagttgcctgaagttggtccagtaacgacagaagacattgagcttgcactaaggaataca 27734336
Query: 699 agaccgtctgctcatcttcatgcacatagatacgaaaagttcaaccaagattatggcagt 758
| || |||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||
Sbjct: 27734335 cggccatctgctcatcttcatgtacatagatacgaaaaattcaatcaagactatggcagt 27734276
Query: 759 catgtcc 765
|||||||
Sbjct: 27734275 catgtcc 27734269
Score = 105 bits (53), Expect = 4e-020
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 189 cttgcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagt 248
||||| || |||||||||||||| || || || |||||||| ||||||||||| || ||
Sbjct: 31883874 cttgctagacatcatgcaccatcgacaatatttcttgatgaaattgatgctattatcagc 31883933
Query: 249 caacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagcta 305
||||||||||||||||| ||||| ||||||||||| || || ||||| |||||||||
Sbjct: 31883934 caacgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagactgagcta 31883990
Score = 105 bits (53), Expect = 4e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
|||||||||||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 27735988 cagatggatgggttaactaagacagatgatctcgtttttgttctagccgccacaaatttg 27735929
Query: 372 ccatgggagttggatgcagcaatgctgcg 400
|||||||| |||||||||||||| ||||
Sbjct: 27735928 ccatgggaactggatgcagcaatgttgcg 27735900
Score = 97.6 bits (49), Expect = 1e-017
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 27737602 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 27737543
Query: 127 cctcgtcgattgt 139
|||| || |||||
Sbjct: 27737542 cctcatcaattgt 27737530
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 19 tatcaccttggaaaggcatattactgtttggtccacctggaacaggaaag 68
|||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 27738267 tatcaccttggaaaggtatattgctttttggtccaccaggaacaggaaag 27738218
Score = 61.9 bits (31), Expect = 5e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||| || ||| ||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct: 31884854 gaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgc 31884913
Query: 729 tacgaaaagttcaaccaagatta 751
|| || ||||| ||||| |||||
Sbjct: 31884914 tatgagaagtttaaccaggatta 31884936
Score = 50.1 bits (25), Expect = 0.002
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| ||||| | || | || ||||| || |||||||||||||||
Sbjct: 31884157 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 31884216
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaa 412
|| ||||| |||| ||||| ||||| || ||||| |||||
Sbjct: 31884217 ccttgggaactggacgcagctatgctccgccggcttgagaa 31884257
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
|||||||||| || || ||||| ||||||||||| ||||| || || ||||| ||||| |
Sbjct: 31883384 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 31883443
Query: 127 cctcgtcgattgtaagcaagtggcg 151
| || || ||||| ||||| |||||
Sbjct: 31883444 catcatcaattgttagcaaatggcg 31883468
Score = 44.1 bits (22), Expect = 0.13
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 519 gagaaaactgaaggatattctggctctgatattcgcctggtatgcaaggaagcagcaatg 578
||||| |||||||| || ||||| || ||||| || || || ||||| ||||| || |||
Sbjct: 31884579 gagaagactgaagggtactctggttcagatatccgtcttgtgtgcaaagaagctgccatg 31884638
Query: 579 cagcccctaagacgggtaatggcagttcttgaag 612
|| || |||||||| | ||| ||||||||||||
Sbjct: 31884639 caaccactaagacgtcttatgtcagttcttgaag 31884672
Score = 44.1 bits (22), Expect = 0.13
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaac 61
||||| || ||||| ||||||||||| ||||| |||||||| || |||||
Sbjct: 31882906 ggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 31882955
>ref|NM_191297.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1287
Score = 218 bits (110), Expect = 4e-054
Identities = 335/410 (81%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
||||| || ||||| ||||||||||| ||||| |||||||| || ||||| || ||||||
Sbjct: 514 ggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaactgggaagaca 573
Query: 72 atgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcg 131
||||| || || ||||| ||||||||||| ||||| || || ||||| ||||| || ||
Sbjct: 574 atgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcagcatca 633
Query: 132 tcgattgtaagcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaactt 191
|| ||||| ||||| ||||| || || || ||||| ||||| ||||| | || || |||
Sbjct: 634 tcaattgttagcaaatggcgtggggattcagagaagctagttaaagttctgtttgagctt 693
Query: 192 gcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagtcaa 251
|| || |||||||||||||| || || || |||||||| ||||||||||| || || |||
Sbjct: 694 gctagacatcatgcaccatcgacaatatttcttgatgaaattgatgctattatcagccaa 753
Query: 252 cgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaata 311
|||||||||||||| ||||| ||||||||||| || || ||||| ||||||||| | ||
Sbjct: 754 cgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagactgagctactcatt 813
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| ||||| | || | || ||||| || |||||||||||||||
Sbjct: 814 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 873
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaagcgtattct 421
|| ||||| |||| ||||| ||||| || ||||| ||||| || |||||
Sbjct: 874 ccttgggaactggacgcagctatgctccgccggcttgagaaacggattct 923
Score = 61.9 bits (31), Expect = 5e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||| || ||| ||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct: 1171 gaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgc 1230
Query: 729 tacgaaaagttcaaccaagatta 751
|| || ||||| ||||| |||||
Sbjct: 1231 tatgagaagtttaaccaggatta 1253
Score = 44.1 bits (22), Expect = 0.13
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 519 gagaaaactgaaggatattctggctctgatattcgcctggtatgcaaggaagcagcaatg 578
||||| |||||||| || ||||| || ||||| || || || ||||| ||||| || |||
Sbjct: 1021 gagaagactgaagggtactctggttcagatatccgtcttgtgtgcaaagaagctgccatg 1080
Query: 579 cagcccctaagacgggtaatggcagttcttgaag 612
|| || |||||||| | ||| ||||||||||||
Sbjct: 1081 caaccactaagacgtcttatgtcagttcttgaag 1114
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 218 bits (110), Expect = 4e-054
Identities = 149/162 (91%)
Strand = Plus / Minus
Query: 153 ggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatct 212
||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 2183942 ggtgattcggagaaactagtgaaagtcttatttgagcttgcaaggcatcatgcaccatcc 2183883
Query: 213 actattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaa 272
|| ||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 2183882 accatttttctcgatgagattgatgctattattagccaacgtggtgaagctcgtagtgaa 2183823
Query: 273 catgaagctagccggcgattgaaaactgagctattaatacag 314
|||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 2183822 catgaagccagtcggcgattgaagactgagctattaatacag 2183781
Score = 190 bits (96), Expect = 9e-046
Identities = 189/220 (85%)
Strand = Plus / Minus
Query: 417 attcttgttccattgccagagccggatgctagacatgctatgtttgaagagctcctgcca 476
||||||||||| || ||||||| || ||||||||||| ||||||||||||||| |||||
Sbjct: 2182545 attcttgttcccttaccagagcaagaagctagacatgccatgtttgaagagctcttgcca 2182486
Query: 477 tatacacctggcacaatggagattccctatgatgttcttgtggagaaaactgaaggatat 536
| | |||||||||||| | || || |||||||||||||||||||||||||||||||||
Sbjct: 2182485 tctgttcctggcacaatgaatatcccatatgatgttcttgtggagaaaactgaaggatat 2182426
Query: 537 tctggctctgatattcgcctggtatgcaaggaagcagcaatgcagcccctaagacgggta 596
|| ||||||||||| ||||| || |||||||| || |||||||| ||||| ||| || ||
Sbjct: 2182425 tcaggctctgatatacgccttgtgtgcaaggaggcggcaatgcaaccccttagaaggtta 2182366
Query: 597 atggcagttcttgaaggcaggaaagaagaggtccctgagg 636
||| | ||||||||||| ||| ||||||| || |||||||
Sbjct: 2182365 atgtcggttcttgaaggaaggcaagaagaagtgcctgagg 2182326
Score = 141 bits (71), Expect = 7e-031
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 639 gagttgcctgaagttggcccagtaactacagaagatattgaacttgctttgaggaataca 698
||||||||||||||||| |||||||| |||||||| ||||| ||||| | |||||||||
Sbjct: 2181778 gagttgcctgaagttggtccagtaacgacagaagacattgagcttgcactaaggaataca 2181719
Query: 699 agaccgtctgctcatcttcatgcacatagatacgaaaagttcaaccaagattatggcagt 758
| || |||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||
Sbjct: 2181718 cggccatctgctcatcttcatgtacatagatacgaaaaattcaatcaagactatggcagt 2181659
Query: 759 catgtcc 765
|||||||
Sbjct: 2181658 catgtcc 2181652
Score = 105 bits (53), Expect = 4e-020
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 189 cttgcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagt 248
||||| || |||||||||||||| || || || |||||||| ||||||||||| || ||
Sbjct: 6331257 cttgctagacatcatgcaccatcgacaatatttcttgatgaaattgatgctattatcagc 6331316
Query: 249 caacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagcta 305
||||||||||||||||| ||||| ||||||||||| || || ||||| |||||||||
Sbjct: 6331317 caacgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagactgagcta 6331373
Score = 105 bits (53), Expect = 4e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
|||||||||||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 2183371 cagatggatgggttaactaagacagatgatctcgtttttgttctagccgccacaaatttg 2183312
Query: 372 ccatgggagttggatgcagcaatgctgcg 400
|||||||| |||||||||||||| ||||
Sbjct: 2183311 ccatgggaactggatgcagcaatgttgcg 2183283
Score = 97.6 bits (49), Expect = 1e-017
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 2184985 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 2184926
Query: 127 cctcgtcgattgt 139
|||| || |||||
Sbjct: 2184925 cctcatcaattgt 2184913
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 19 tatcaccttggaaaggcatattactgtttggtccacctggaacaggaaag 68
|||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 2185650 tatcaccttggaaaggtatattgctttttggtccaccaggaacaggaaag 2185601
Score = 61.9 bits (31), Expect = 5e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||| || ||| ||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct: 6332237 gaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgc 6332296
Query: 729 tacgaaaagttcaaccaagatta 751
|| || ||||| ||||| |||||
Sbjct: 6332297 tatgagaagtttaaccaggatta 6332319
Score = 50.1 bits (25), Expect = 0.002
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| ||||| | || | || ||||| || |||||||||||||||
Sbjct: 6331540 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 6331599
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaa 412
|| ||||| |||| ||||| ||||| || ||||| |||||
Sbjct: 6331600 ccttgggaactggacgcagctatgctccgccggcttgagaa 6331640
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
|||||||||| || || ||||| ||||||||||| ||||| || || ||||| ||||| |
Sbjct: 6330767 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 6330826
Query: 127 cctcgtcgattgtaagcaagtggcg 151
| || || ||||| ||||| |||||
Sbjct: 6330827 catcatcaattgttagcaaatggcg 6330851
Score = 44.1 bits (22), Expect = 0.13
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 519 gagaaaactgaaggatattctggctctgatattcgcctggtatgcaaggaagcagcaatg 578
||||| |||||||| || ||||| || ||||| || || || ||||| ||||| || |||
Sbjct: 6331962 gagaagactgaagggtactctggttcagatatccgtcttgtgtgcaaagaagctgccatg 6332021
Query: 579 cagcccctaagacgggtaatggcagttcttgaag 612
|| || |||||||| | ||| ||||||||||||
Sbjct: 6332022 caaccactaagacgtcttatgtcagttcttgaag 6332055
Score = 44.1 bits (22), Expect = 0.13
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaac 61
||||| || ||||| ||||||||||| ||||| |||||||| || |||||
Sbjct: 6330289 ggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 6330338
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0007F06
Length = 150817
Score = 218 bits (110), Expect = 4e-054
Identities = 149/162 (91%)
Strand = Plus / Minus
Query: 153 ggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatct 212
||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 123183 ggtgattcggagaaactagtgaaagtcttatttgagcttgcaaggcatcatgcaccatcc 123124
Query: 213 actattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaa 272
|| ||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 123123 accatttttctcgatgagattgatgctattattagccaacgtggtgaagctcgtagtgaa 123064
Query: 273 catgaagctagccggcgattgaaaactgagctattaatacag 314
|||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 123063 catgaagccagtcggcgattgaagactgagctattaatacag 123022
Score = 190 bits (96), Expect = 9e-046
Identities = 189/220 (85%)
Strand = Plus / Minus
Query: 417 attcttgttccattgccagagccggatgctagacatgctatgtttgaagagctcctgcca 476
||||||||||| || ||||||| || ||||||||||| ||||||||||||||| |||||
Sbjct: 121786 attcttgttcccttaccagagcaagaagctagacatgccatgtttgaagagctcttgcca 121727
Query: 477 tatacacctggcacaatggagattccctatgatgttcttgtggagaaaactgaaggatat 536
| | |||||||||||| | || || |||||||||||||||||||||||||||||||||
Sbjct: 121726 tctgttcctggcacaatgaatatcccatatgatgttcttgtggagaaaactgaaggatat 121667
Query: 537 tctggctctgatattcgcctggtatgcaaggaagcagcaatgcagcccctaagacgggta 596
|| ||||||||||| ||||| || |||||||| || |||||||| ||||| ||| || ||
Sbjct: 121666 tcaggctctgatatacgccttgtgtgcaaggaggcggcaatgcaaccccttagaaggtta 121607
Query: 597 atggcagttcttgaaggcaggaaagaagaggtccctgagg 636
||| | ||||||||||| ||| ||||||| || |||||||
Sbjct: 121606 atgtcggttcttgaaggaaggcaagaagaagtgcctgagg 121567
Score = 141 bits (71), Expect = 7e-031
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 639 gagttgcctgaagttggcccagtaactacagaagatattgaacttgctttgaggaataca 698
||||||||||||||||| |||||||| |||||||| ||||| ||||| | |||||||||
Sbjct: 121019 gagttgcctgaagttggtccagtaacgacagaagacattgagcttgcactaaggaataca 120960
Query: 699 agaccgtctgctcatcttcatgcacatagatacgaaaagttcaaccaagattatggcagt 758
| || |||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||
Sbjct: 120959 cggccatctgctcatcttcatgtacatagatacgaaaaattcaatcaagactatggcagt 120900
Query: 759 catgtcc 765
|||||||
Sbjct: 120899 catgtcc 120893
Score = 105 bits (53), Expect = 4e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
|||||||||||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 122612 cagatggatgggttaactaagacagatgatctcgtttttgttctagccgccacaaatttg 122553
Query: 372 ccatgggagttggatgcagcaatgctgcg 400
|||||||| |||||||||||||| ||||
Sbjct: 122552 ccatgggaactggatgcagcaatgttgcg 122524
Score = 97.6 bits (49), Expect = 1e-017
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 124226 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 124167
Query: 127 cctcgtcgattgt 139
|||| || |||||
Sbjct: 124166 cctcatcaattgt 124154
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 19 tatcaccttggaaaggcatattactgtttggtccacctggaacaggaaag 68
|||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 124891 tatcaccttggaaaggtatattgctttttggtccaccaggaacaggaaag 124842
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485G01
Length = 167203
Score = 218 bits (110), Expect = 4e-054
Identities = 149/162 (91%)
Strand = Plus / Minus
Query: 153 ggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatct 212
||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 64455 ggtgattcggagaaactagtgaaagtcttatttgagcttgcaaggcatcatgcaccatcc 64396
Query: 213 actattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaa 272
|| ||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 64395 accatttttctcgatgagattgatgctattattagccaacgtggtgaagctcgtagtgaa 64336
Query: 273 catgaagctagccggcgattgaaaactgagctattaatacag 314
|||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 64335 catgaagccagtcggcgattgaagactgagctattaatacag 64294
Score = 190 bits (96), Expect = 9e-046
Identities = 189/220 (85%)
Strand = Plus / Minus
Query: 417 attcttgttccattgccagagccggatgctagacatgctatgtttgaagagctcctgcca 476
||||||||||| || ||||||| || ||||||||||| ||||||||||||||| |||||
Sbjct: 63058 attcttgttcccttaccagagcaagaagctagacatgccatgtttgaagagctcttgcca 62999
Query: 477 tatacacctggcacaatggagattccctatgatgttcttgtggagaaaactgaaggatat 536
| | |||||||||||| | || || |||||||||||||||||||||||||||||||||
Sbjct: 62998 tctgttcctggcacaatgaatatcccatatgatgttcttgtggagaaaactgaaggatat 62939
Query: 537 tctggctctgatattcgcctggtatgcaaggaagcagcaatgcagcccctaagacgggta 596
|| ||||||||||| ||||| || |||||||| || |||||||| ||||| ||| || ||
Sbjct: 62938 tcaggctctgatatacgccttgtgtgcaaggaggcggcaatgcaaccccttagaaggtta 62879
Query: 597 atggcagttcttgaaggcaggaaagaagaggtccctgagg 636
||| | ||||||||||| ||| ||||||| || |||||||
Sbjct: 62878 atgtcggttcttgaaggaaggcaagaagaagtgcctgagg 62839
Score = 141 bits (71), Expect = 7e-031
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 639 gagttgcctgaagttggcccagtaactacagaagatattgaacttgctttgaggaataca 698
||||||||||||||||| |||||||| |||||||| ||||| ||||| | |||||||||
Sbjct: 62291 gagttgcctgaagttggtccagtaacgacagaagacattgagcttgcactaaggaataca 62232
Query: 699 agaccgtctgctcatcttcatgcacatagatacgaaaagttcaaccaagattatggcagt 758
| || |||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||
Sbjct: 62231 cggccatctgctcatcttcatgtacatagatacgaaaaattcaatcaagactatggcagt 62172
Query: 759 catgtcc 765
|||||||
Sbjct: 62171 catgtcc 62165
Score = 105 bits (53), Expect = 4e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
|||||||||||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 63884 cagatggatgggttaactaagacagatgatctcgtttttgttctagccgccacaaatttg 63825
Query: 372 ccatgggagttggatgcagcaatgctgcg 400
|||||||| |||||||||||||| ||||
Sbjct: 63824 ccatgggaactggatgcagcaatgttgcg 63796
Score = 97.6 bits (49), Expect = 1e-017
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 65498 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 65439
Query: 127 cctcgtcgattgt 139
|||| || |||||
Sbjct: 65438 cctcatcaattgt 65426
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 19 tatcaccttggaaaggcatattactgtttggtccacctggaacaggaaag 68
|||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 66163 tatcaccttggaaaggtatattgctttttggtccaccaggaacaggaaag 66114
>dbj|AB110177.1| Oryza sativa (japonica cultivar-group) mRNA for katanin, complete
cds, clone: 13YPG038
Length = 1375
Score = 218 bits (110), Expect = 4e-054
Identities = 335/410 (81%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
||||| || ||||| ||||||||||| ||||| |||||||| || ||||| || ||||||
Sbjct: 465 ggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaactgggaagaca 524
Query: 72 atgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcg 131
||||| || || ||||| ||||||||||| ||||| || || ||||| ||||| || ||
Sbjct: 525 atgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcagcatca 584
Query: 132 tcgattgtaagcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaactt 191
|| ||||| ||||| ||||| || || || ||||| ||||| ||||| | || || |||
Sbjct: 585 tcaattgttagcaaatggcgtggggattcagagaagctagttaaagttctgtttgagctt 644
Query: 192 gcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagtcaa 251
|| || |||||||||||||| || || || |||||||| ||||||||||| || || |||
Sbjct: 645 gctagacatcatgcaccatcgacaatatttcttgatgaaattgatgctattatcagccaa 704
Query: 252 cgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaata 311
|||||||||||||| ||||| ||||||||||| || || ||||| ||||||||| | ||
Sbjct: 705 cgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagactgagctactcatt 764
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| ||||| | || | || ||||| || |||||||||||||||
Sbjct: 765 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 824
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaagcgtattct 421
|| ||||| |||| ||||| ||||| || ||||| ||||| || |||||
Sbjct: 825 ccttgggaactggacgcagctatgctccgccggcttgagaaacggattct 874
Score = 61.9 bits (31), Expect = 5e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||| || ||| ||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct: 1122 gaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgc 1181
Query: 729 tacgaaaagttcaaccaagatta 751
|| || ||||| ||||| |||||
Sbjct: 1182 tatgagaagtttaaccaggatta 1204
Score = 44.1 bits (22), Expect = 0.13
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 519 gagaaaactgaaggatattctggctctgatattcgcctggtatgcaaggaagcagcaatg 578
||||| |||||||| || ||||| || ||||| || || || ||||| ||||| || |||
Sbjct: 972 gagaagactgaagggtactctggttcagatatccgtcttgtgtgcaaagaagctgccatg 1031
Query: 579 cagcccctaagacgggtaatggcagttcttgaag 612
|| || |||||||| | ||| ||||||||||||
Sbjct: 1032 caaccactaagacgtcttatgtcagttcttgaag 1065
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 218 bits (110), Expect = 4e-054
Identities = 149/162 (91%)
Strand = Plus / Minus
Query: 153 ggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatct 212
||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 2123786 ggtgattcggagaaactagtgaaagtcttatttgagcttgcaaggcatcatgcaccatcc 2123727
Query: 213 actattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaa 272
|| ||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 2123726 accatttttctcgatgagattgatgctattattagccaacgtggtgaagctcgtagtgaa 2123667
Query: 273 catgaagctagccggcgattgaaaactgagctattaatacag 314
|||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 2123666 catgaagccagtcggcgattgaagactgagctattaatacag 2123625
Score = 190 bits (96), Expect = 9e-046
Identities = 189/220 (85%)
Strand = Plus / Minus
Query: 417 attcttgttccattgccagagccggatgctagacatgctatgtttgaagagctcctgcca 476
||||||||||| || ||||||| || ||||||||||| ||||||||||||||| |||||
Sbjct: 2122389 attcttgttcccttaccagagcaagaagctagacatgccatgtttgaagagctcttgcca 2122330
Query: 477 tatacacctggcacaatggagattccctatgatgttcttgtggagaaaactgaaggatat 536
| | |||||||||||| | || || |||||||||||||||||||||||||||||||||
Sbjct: 2122329 tctgttcctggcacaatgaatatcccatatgatgttcttgtggagaaaactgaaggatat 2122270
Query: 537 tctggctctgatattcgcctggtatgcaaggaagcagcaatgcagcccctaagacgggta 596
|| ||||||||||| ||||| || |||||||| || |||||||| ||||| ||| || ||
Sbjct: 2122269 tcaggctctgatatacgccttgtgtgcaaggaggcggcaatgcaaccccttagaaggtta 2122210
Query: 597 atggcagttcttgaaggcaggaaagaagaggtccctgagg 636
||| | ||||||||||| ||| ||||||| || |||||||
Sbjct: 2122209 atgtcggttcttgaaggaaggcaagaagaagtgcctgagg 2122170
Score = 141 bits (71), Expect = 7e-031
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 639 gagttgcctgaagttggcccagtaactacagaagatattgaacttgctttgaggaataca 698
||||||||||||||||| |||||||| |||||||| ||||| ||||| | |||||||||
Sbjct: 2121622 gagttgcctgaagttggtccagtaacgacagaagacattgagcttgcactaaggaataca 2121563
Query: 699 agaccgtctgctcatcttcatgcacatagatacgaaaagttcaaccaagattatggcagt 758
| || |||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||
Sbjct: 2121562 cggccatctgctcatcttcatgtacatagatacgaaaaattcaatcaagactatggcagt 2121503
Query: 759 catgtcc 765
|||||||
Sbjct: 2121502 catgtcc 2121496
Score = 105 bits (53), Expect = 4e-020
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 189 cttgcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagt 248
||||| || |||||||||||||| || || || |||||||| ||||||||||| || ||
Sbjct: 6232090 cttgctagacatcatgcaccatcgacaatatttcttgatgaaattgatgctattatcagc 6232149
Query: 249 caacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagcta 305
||||||||||||||||| ||||| ||||||||||| || || ||||| |||||||||
Sbjct: 6232150 caacgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagactgagcta 6232206
Score = 105 bits (53), Expect = 4e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
|||||||||||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 2123215 cagatggatgggttaactaagacagatgatctcgtttttgttctagccgccacaaatttg 2123156
Query: 372 ccatgggagttggatgcagcaatgctgcg 400
|||||||| |||||||||||||| ||||
Sbjct: 2123155 ccatgggaactggatgcagcaatgttgcg 2123127
Score = 97.6 bits (49), Expect = 1e-017
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 2124829 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 2124770
Query: 127 cctcgtcgattgt 139
|||| || |||||
Sbjct: 2124769 cctcatcaattgt 2124757
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 19 tatcaccttggaaaggcatattactgtttggtccacctggaacaggaaag 68
|||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 2125494 tatcaccttggaaaggtatattgctttttggtccaccaggaacaggaaag 2125445
Score = 61.9 bits (31), Expect = 5e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||| || ||| ||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct: 6233070 gaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgc 6233129
Query: 729 tacgaaaagttcaaccaagatta 751
|| || ||||| ||||| |||||
Sbjct: 6233130 tatgagaagtttaaccaggatta 6233152
Score = 50.1 bits (25), Expect = 0.002
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| ||||| | || | || ||||| || |||||||||||||||
Sbjct: 6232373 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 6232432
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaa 412
|| ||||| |||| ||||| ||||| || ||||| |||||
Sbjct: 6232433 ccttgggaactggacgcagctatgctccgccggcttgagaa 6232473
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
|||||||||| || || ||||| ||||||||||| ||||| || || ||||| ||||| |
Sbjct: 6231600 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 6231659
Query: 127 cctcgtcgattgtaagcaagtggcg 151
| || || ||||| ||||| |||||
Sbjct: 6231660 catcatcaattgttagcaaatggcg 6231684
Score = 44.1 bits (22), Expect = 0.13
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 519 gagaaaactgaaggatattctggctctgatattcgcctggtatgcaaggaagcagcaatg 578
||||| |||||||| || ||||| || ||||| || || || ||||| ||||| || |||
Sbjct: 6232795 gagaagactgaagggtactctggttcagatatccgtcttgtgtgcaaagaagctgccatg 6232854
Query: 579 cagcccctaagacgggtaatggcagttcttgaag 612
|| || |||||||| | ||| ||||||||||||
Sbjct: 6232855 caaccactaagacgtcttatgtcagttcttgaag 6232888
Score = 44.1 bits (22), Expect = 0.13
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaac 61
||||| || ||||| ||||||||||| ||||| |||||||| || |||||
Sbjct: 6231122 ggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 6231171
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 218 bits (110), Expect = 4e-054
Identities = 149/162 (91%)
Strand = Plus / Minus
Query: 153 ggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatct 212
||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 27325507 ggtgattcggagaaactagtgaaagtcttatttgagcttgcaaggcatcatgcaccatcc 27325448
Query: 213 actattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaa 272
|| ||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 27325447 accatttttctcgatgagattgatgctattattagccaacgtggtgaagctcgtagtgaa 27325388
Query: 273 catgaagctagccggcgattgaaaactgagctattaatacag 314
|||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 27325387 catgaagccagtcggcgattgaagactgagctattaatacag 27325346
Score = 190 bits (96), Expect = 9e-046
Identities = 189/220 (85%)
Strand = Plus / Minus
Query: 417 attcttgttccattgccagagccggatgctagacatgctatgtttgaagagctcctgcca 476
||||||||||| || ||||||| || ||||||||||| ||||||||||||||| |||||
Sbjct: 27324110 attcttgttcccttaccagagcaagaagctagacatgccatgtttgaagagctcttgcca 27324051
Query: 477 tatacacctggcacaatggagattccctatgatgttcttgtggagaaaactgaaggatat 536
| | |||||||||||| | || || |||||||||||||||||||||||||||||||||
Sbjct: 27324050 tctgttcctggcacaatgaatatcccatatgatgttcttgtggagaaaactgaaggatat 27323991
Query: 537 tctggctctgatattcgcctggtatgcaaggaagcagcaatgcagcccctaagacgggta 596
|| ||||||||||| ||||| || |||||||| || |||||||| ||||| ||| || ||
Sbjct: 27323990 tcaggctctgatatacgccttgtgtgcaaggaggcggcaatgcaaccccttagaaggtta 27323931
Query: 597 atggcagttcttgaaggcaggaaagaagaggtccctgagg 636
||| | ||||||||||| ||| ||||||| || |||||||
Sbjct: 27323930 atgtcggttcttgaaggaaggcaagaagaagtgcctgagg 27323891
Score = 141 bits (71), Expect = 7e-031
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 639 gagttgcctgaagttggcccagtaactacagaagatattgaacttgctttgaggaataca 698
||||||||||||||||| |||||||| |||||||| ||||| ||||| | |||||||||
Sbjct: 27323343 gagttgcctgaagttggtccagtaacgacagaagacattgagcttgcactaaggaataca 27323284
Query: 699 agaccgtctgctcatcttcatgcacatagatacgaaaagttcaaccaagattatggcagt 758
| || |||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||
Sbjct: 27323283 cggccatctgctcatcttcatgtacatagatacgaaaaattcaatcaagactatggcagt 27323224
Query: 759 catgtcc 765
|||||||
Sbjct: 27323223 catgtcc 27323217
Score = 105 bits (53), Expect = 4e-020
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 189 cttgcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagt 248
||||| || |||||||||||||| || || || |||||||| ||||||||||| || ||
Sbjct: 31433811 cttgctagacatcatgcaccatcgacaatatttcttgatgaaattgatgctattatcagc 31433870
Query: 249 caacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagcta 305
||||||||||||||||| ||||| ||||||||||| || || ||||| |||||||||
Sbjct: 31433871 caacgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagactgagcta 31433927
Score = 105 bits (53), Expect = 4e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
|||||||||||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 27324936 cagatggatgggttaactaagacagatgatctcgtttttgttctagccgccacaaatttg 27324877
Query: 372 ccatgggagttggatgcagcaatgctgcg 400
|||||||| |||||||||||||| ||||
Sbjct: 27324876 ccatgggaactggatgcagcaatgttgcg 27324848
Score = 97.6 bits (49), Expect = 1e-017
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 27326550 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 27326491
Query: 127 cctcgtcgattgt 139
|||| || |||||
Sbjct: 27326490 cctcatcaattgt 27326478
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 19 tatcaccttggaaaggcatattactgtttggtccacctggaacaggaaag 68
|||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 27327215 tatcaccttggaaaggtatattgctttttggtccaccaggaacaggaaag 27327166
Score = 61.9 bits (31), Expect = 5e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||| || ||| ||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct: 31434791 gaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgc 31434850
Query: 729 tacgaaaagttcaaccaagatta 751
|| || ||||| ||||| |||||
Sbjct: 31434851 tatgagaagtttaaccaggatta 31434873
Score = 50.1 bits (25), Expect = 0.002
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| ||||| | || | || ||||| || |||||||||||||||
Sbjct: 31434094 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 31434153
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaa 412
|| ||||| |||| ||||| ||||| || ||||| |||||
Sbjct: 31434154 ccttgggaactggacgcagctatgctccgccggcttgagaa 31434194
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
|||||||||| || || ||||| ||||||||||| ||||| || || ||||| ||||| |
Sbjct: 31433321 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 31433380
Query: 127 cctcgtcgattgtaagcaagtggcg 151
| || || ||||| ||||| |||||
Sbjct: 31433381 catcatcaattgttagcaaatggcg 31433405
Score = 44.1 bits (22), Expect = 0.13
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 519 gagaaaactgaaggatattctggctctgatattcgcctggtatgcaaggaagcagcaatg 578
||||| |||||||| || ||||| || ||||| || || || ||||| ||||| || |||
Sbjct: 31434516 gagaagactgaagggtactctggttcagatatccgtcttgtgtgcaaagaagctgccatg 31434575
Query: 579 cagcccctaagacgggtaatggcagttcttgaag 612
|| || |||||||| | ||| ||||||||||||
Sbjct: 31434576 caaccactaagacgtcttatgtcagttcttgaag 31434609
Score = 44.1 bits (22), Expect = 0.13
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaac 61
||||| || ||||| ||||||||||| ||||| |||||||| || |||||
Sbjct: 31432843 ggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 31432892
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 218 bits (110), Expect = 4e-054
Identities = 149/162 (91%)
Strand = Plus / Minus
Query: 153 ggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatct 212
||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 27655889 ggtgattcggagaaactagtgaaagtcttatttgagcttgcaaggcatcatgcaccatcc 27655830
Query: 213 actattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaa 272
|| ||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 27655829 accatttttctcgatgagattgatgctattattagccaacgtggtgaagctcgtagtgaa 27655770
Query: 273 catgaagctagccggcgattgaaaactgagctattaatacag 314
|||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 27655769 catgaagccagtcggcgattgaagactgagctattaatacag 27655728
Score = 190 bits (96), Expect = 9e-046
Identities = 189/220 (85%)
Strand = Plus / Minus
Query: 417 attcttgttccattgccagagccggatgctagacatgctatgtttgaagagctcctgcca 476
||||||||||| || ||||||| || ||||||||||| ||||||||||||||| |||||
Sbjct: 27654492 attcttgttcccttaccagagcaagaagctagacatgccatgtttgaagagctcttgcca 27654433
Query: 477 tatacacctggcacaatggagattccctatgatgttcttgtggagaaaactgaaggatat 536
| | |||||||||||| | || || |||||||||||||||||||||||||||||||||
Sbjct: 27654432 tctgttcctggcacaatgaatatcccatatgatgttcttgtggagaaaactgaaggatat 27654373
Query: 537 tctggctctgatattcgcctggtatgcaaggaagcagcaatgcagcccctaagacgggta 596
|| ||||||||||| ||||| || |||||||| || |||||||| ||||| ||| || ||
Sbjct: 27654372 tcaggctctgatatacgccttgtgtgcaaggaggcggcaatgcaaccccttagaaggtta 27654313
Query: 597 atggcagttcttgaaggcaggaaagaagaggtccctgagg 636
||| | ||||||||||| ||| ||||||| || |||||||
Sbjct: 27654312 atgtcggttcttgaaggaaggcaagaagaagtgcctgagg 27654273
Score = 141 bits (71), Expect = 7e-031
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 639 gagttgcctgaagttggcccagtaactacagaagatattgaacttgctttgaggaataca 698
||||||||||||||||| |||||||| |||||||| ||||| ||||| | |||||||||
Sbjct: 27653725 gagttgcctgaagttggtccagtaacgacagaagacattgagcttgcactaaggaataca 27653666
Query: 699 agaccgtctgctcatcttcatgcacatagatacgaaaagttcaaccaagattatggcagt 758
| || |||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||
Sbjct: 27653665 cggccatctgctcatcttcatgtacatagatacgaaaaattcaatcaagactatggcagt 27653606
Query: 759 catgtcc 765
|||||||
Sbjct: 27653605 catgtcc 27653599
Score = 105 bits (53), Expect = 4e-020
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 189 cttgcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagt 248
||||| || |||||||||||||| || || || |||||||| ||||||||||| || ||
Sbjct: 31803204 cttgctagacatcatgcaccatcgacaatatttcttgatgaaattgatgctattatcagc 31803263
Query: 249 caacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagcta 305
||||||||||||||||| ||||| ||||||||||| || || ||||| |||||||||
Sbjct: 31803264 caacgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagactgagcta 31803320
Score = 105 bits (53), Expect = 4e-020
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
|||||||||||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 27655318 cagatggatgggttaactaagacagatgatctcgtttttgttctagccgccacaaatttg 27655259
Query: 372 ccatgggagttggatgcagcaatgctgcg 400
|||||||| |||||||||||||| ||||
Sbjct: 27655258 ccatgggaactggatgcagcaatgttgcg 27655230
Score = 97.6 bits (49), Expect = 1e-017
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 27656932 agacaatgctagcaaaagctgtggctactgagtgcaaaacaaccttcttcaatatttcag 27656873
Query: 127 cctcgtcgattgt 139
|||| || |||||
Sbjct: 27656872 cctcatcaattgt 27656860
Score = 67.9 bits (34), Expect = 9e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 19 tatcaccttggaaaggcatattactgtttggtccacctggaacaggaaag 68
|||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 27657597 tatcaccttggaaaggtatattgctttttggtccaccaggaacaggaaag 27657548
Score = 61.9 bits (31), Expect = 5e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||| || ||| ||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct: 31804184 gaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgc 31804243
Query: 729 tacgaaaagttcaaccaagatta 751
|| || ||||| ||||| |||||
Sbjct: 31804244 tatgagaagtttaaccaggatta 31804266
Score = 50.1 bits (25), Expect = 0.002
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| ||||| | || | || ||||| || |||||||||||||||
Sbjct: 31803487 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 31803546
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaa 412
|| ||||| |||| ||||| ||||| || ||||| |||||
Sbjct: 31803547 ccttgggaactggacgcagctatgctccgccggcttgagaa 31803587
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
|||||||||| || || ||||| ||||||||||| ||||| || || ||||| ||||| |
Sbjct: 31802714 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 31802773
Query: 127 cctcgtcgattgtaagcaagtggcg 151
| || || ||||| ||||| |||||
Sbjct: 31802774 catcatcaattgttagcaaatggcg 31802798
Score = 44.1 bits (22), Expect = 0.13
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 519 gagaaaactgaaggatattctggctctgatattcgcctggtatgcaaggaagcagcaatg 578
||||| |||||||| || ||||| || ||||| || || || ||||| ||||| || |||
Sbjct: 31803909 gagaagactgaagggtactctggttcagatatccgtcttgtgtgcaaagaagctgccatg 31803968
Query: 579 cagcccctaagacgggtaatggcagttcttgaag 612
|| || |||||||| | ||| ||||||||||||
Sbjct: 31803969 caaccactaagacgtcttatgtcagttcttgaag 31804002
Score = 44.1 bits (22), Expect = 0.13
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaac 61
||||| || ||||| ||||||||||| ||||| |||||||| || |||||
Sbjct: 31802236 ggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 31802285
>dbj|AK105474.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-A04, full
insert sequence
Length = 2096
Score = 210 bits (106), Expect = 1e-051
Identities = 334/410 (81%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
||||| || ||||| ||||||||||| ||||| |||||||| || ||||| || ||||||
Sbjct: 502 ggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaactgggaagaca 561
Query: 72 atgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcg 131
||||| || || |||| ||||||||||| ||||| || || ||||| ||||| || ||
Sbjct: 562 atgctggcaaagtctgttgctactgagtgtaaaactacattcttcaacatttcagcatca 621
Query: 132 tcgattgtaagcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaactt 191
|| ||||| ||||| ||||| || || || ||||| ||||| ||||| | || || |||
Sbjct: 622 tcaattgttagcaaatggcgtggggattcagagaagctagttaaagttctgtttgagctt 681
Query: 192 gcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagtcaa 251
|| || |||||||||||||| || || || |||||||| ||||||||||| || || |||
Sbjct: 682 gctagacatcatgcaccatcgacaatatttcttgatgaaattgatgctattatcagccaa 741
Query: 252 cgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaata 311
|||||||||||||| ||||| ||||||||||| || || ||||| ||||||||| | ||
Sbjct: 742 cgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagactgagctactcatt 801
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| ||||| | || | || ||||| || |||||||||||||||
Sbjct: 802 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 861
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaagcgtattct 421
|| ||||| |||| ||||| ||||| || ||||| ||||| || |||||
Sbjct: 862 ccttgggaactggacgcagctatgctccgccggcttgagaaacggattct 911
Score = 61.9 bits (31), Expect = 5e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||| || ||| ||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct: 1159 gaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgc 1218
Query: 729 tacgaaaagttcaaccaagatta 751
|| || ||||| ||||| |||||
Sbjct: 1219 tatgagaagtttaaccaggatta 1241
Score = 44.1 bits (22), Expect = 0.13
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 519 gagaaaactgaaggatattctggctctgatattcgcctggtatgcaaggaagcagcaatg 578
||||| |||||||| || ||||| || ||||| || || || ||||| ||||| || |||
Sbjct: 1009 gagaagactgaagggtactctggttcagatatccgtcttgtgtgcaaagaagctgccatg 1068
Query: 579 cagcccctaagacgggtaatggcagttcttgaag 612
|| || |||||||| | ||| ||||||||||||
Sbjct: 1069 caaccactaagacgtcttatgtcagttcttgaag 1102
>gb|AQ860702.1|AQ860702 nbeb0015H05f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0015H05f, DNA sequence
Length = 801
Score = 151 bits (76), Expect = 8e-034
Identities = 133/152 (87%)
Strand = Plus / Plus
Query: 417 attcttgttccattgccagagccggatgctagacatgctatgtttgaagagctcctgcca 476
||||||||||| || ||||||| || ||||||||||| ||||||||||||||| |||||
Sbjct: 145 attcttgttcccttaccagagcaagaagctagacatgccatgtttgaagagctcttgcca 204
Query: 477 tatacacctggcacaatggagattccctatgatgttcttgtggagaaaactgaaggatat 536
| | |||||||||||| | || || |||||||||||||||||||||||||||||||||
Sbjct: 205 tctgttcctggcacaatgaatatcccatatgatgttcttgtggagaaaactgaaggatat 264
Query: 537 tctggctctgatattcgcctggtatgcaagga 568
|| ||||||||||| ||||| || ||||||||
Sbjct: 265 tcaggctctgatatacgccttgtgtgcaagga 296
>gb|AQ863933.1|AQ863933 nbeb0022C08r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0022C08r, DNA sequence
Length = 439
Score = 121 bits (61), Expect = 7e-025
Identities = 184/221 (83%), Gaps = 3/221 (1%)
Strand = Plus / Plus
Query: 417 attcttgttccattgccagagccggatgctagacatgctatgtttgaagagctcctgcca 476
||||||||||| || ||||||| || ||||||||||| ||||||||||||||| ||| |
Sbjct: 174 attcttgttcccttaccagagcaagaagctagacatgccatgtttgaagagctcttgc-a 232
Query: 477 tatacacctggcacaatggagattccctatgatgttctt-gtggagaaaactgaaggata 535
| | |||||||||||| | || || ||||||| |||| | ||| |||||||||| |||
Sbjct: 233 tctgttcctggcacaatgaatatcccatatgatggtctttggggaaaaaactgaag-ata 291
Query: 536 ttctggctctgatattcgcctggtatgcaaggaagcagcaatgcagcccctaagacgggt 595
||| ||||||||||| ||||| || |||||||| || |||||||| ||||| ||| || |
Sbjct: 292 ttcaggctctgatatacgccttgtgtgcaaggaggcggcaatgcaaccccttagaaggtt 351
Query: 596 aatggcagttcttgaaggcaggaaagaagaggtccctgagg 636
|||| | ||||||||||| ||| ||||||| || |||||||
Sbjct: 352 aatgtcggttcttgaaggaaggcaagaagaagtgcctgagg 392
>gb|BP184575.1|BP184575 BP184575 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 13YPG038, mRNA
sequence
Length = 693
Score = 121 bits (61), Expect = 7e-025
Identities = 187/229 (81%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaacaggaaagaca 71
||||| || ||||| ||||||||||| ||||| |||||||| || ||||| || ||||||
Sbjct: 465 ggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaactgggaagaca 524
Query: 72 atgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctgcctcg 131
||||| || || ||||| ||||||||||| ||||| || || ||||| ||||| || ||
Sbjct: 525 atgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcagcatca 584
Query: 132 tcgattgtaagcaagtggcgcggtgactcggagaaactagtgaaagtgttattcgaactt 191
|| ||||| ||||| ||||| || || || ||||| ||||| ||||| | || || |||
Sbjct: 585 tcaattgttagcaaatggcgtggggattcagagaagctagttaaagttctgtttgagctt 644
Query: 192 gcaaggcatcatgcaccatctactattttccttgatgagattgatgcta 240
|| || |||||||||||||| || || || |||||||| ||||||||||
Sbjct: 645 gctagacatcatgcaccatcgacaatatttcttgatgaaattgatgcta 693
>gb|AU091713.1|AU091713 AU091713 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S20142, mRNA sequence
Length = 701
Score = 107 bits (54), Expect = 1e-020
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgtggctactgagtgcaaa 104
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 627 tttggtccaccaggaacaggaaagacaatgctagcaaaagctgtggctactgagtgcaan 686
Query: 105 acaac 109
|||||
Sbjct: 687 acaac 691
>gb|AACV01002374.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002374, whole
genome shotgun sequence
Length = 29985
Score = 105 bits (53), Expect = 4e-020
Identities = 101/117 (86%)
Strand = Plus / Minus
Query: 189 cttgcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagt 248
||||| || |||||||||||||| || || || |||||||| ||||||||||| || ||
Sbjct: 11712 cttgctagacatcatgcaccatcgacaatatttcttgatgaaattgatgctattatcagc 11653
Query: 249 caacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagcta 305
||||||||||||||||| ||||| ||||||||||| || || ||||| |||||||||
Sbjct: 11652 caacgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagactgagcta 11596
Score = 61.9 bits (31), Expect = 5e-007
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||| || ||| ||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct: 10732 gaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgc 10673
Query: 729 tacgaaaagttcaaccaagatta 751
|| || ||||| ||||| |||||
Sbjct: 10672 tatgagaagtttaaccaggatta 10650
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
|||||||||| || || ||||| ||||||||||| ||||| || || ||||| ||||| |
Sbjct: 12202 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 12143
Query: 127 cctcgtcgattgtaagcaagtggcg 151
| || || ||||| ||||| |||||
Sbjct: 12142 catcatcaattgttagcaaatggcg 12118
Score = 50.1 bits (25), Expect = 0.002
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| ||||| | || | || ||||| || |||||||||||||||
Sbjct: 11429 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 11370
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaa 412
|| ||||| |||| ||||| ||||| || ||||| |||||
Sbjct: 11369 ccttgggaactggacgcagctatgctccgccggcttgagaa 11329
Score = 44.1 bits (22), Expect = 0.13
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaac 61
||||| || ||||| ||||||||||| ||||| |||||||| || |||||
Sbjct: 12680 ggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 12631
Score = 44.1 bits (22), Expect = 0.13
Identities = 76/94 (80%)
Strand = Plus / Minus
Query: 519 gagaaaactgaaggatattctggctctgatattcgcctggtatgcaaggaagcagcaatg 578
||||| |||||||| || ||||| || ||||| || || || ||||| ||||| || |||
Sbjct: 11007 gagaagactgaagggtactctggttcagatatccgtcttgtgtgcaaagaagctgccatg 10948
Query: 579 cagcccctaagacgggtaatggcagttcttgaag 612
|| || |||||||| | ||| ||||||||||||
Sbjct: 10947 caaccactaagacgtcttatgtcagttcttgaag 10914
>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1414_E05
Length = 105222
Score = 105 bits (53), Expect = 4e-020
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 189 cttgcaaggcatcatgcaccatctactattttccttgatgagattgatgctatcattagt 248
||||| || |||||||||||||| || || || |||||||| ||||||||||| || ||
Sbjct: 81242 cttgctagacatcatgcaccatcgacaatatttcttgatgaaattgatgctattatcagc 81301
Query: 249 caacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagcta 305
||||||||||||||||| ||||| ||||||||||| || || ||||| |||||||||
Sbjct: 81302 caacgtggtgaagctcgcagtgagcatgaagctagtcgacgcttgaagactgagcta 81358
Score = 61.9 bits (31), Expect = 5e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||| || ||| ||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct: 82222 gaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgc 82281
Query: 729 tacgaaaagttcaaccaagatta 751
|| || ||||| ||||| |||||
Sbjct: 82282 tatgagaagtttaaccaggatta 82304
Score = 50.1 bits (25), Expect = 0.002
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
||||||||||| ||||| ||||| | || | || ||||| || |||||||||||||||
Sbjct: 81525 cagatggatggcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaattta 81584
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaa 412
|| ||||| |||| ||||| ||||| || ||||| |||||
Sbjct: 81585 ccttgggaactggacgcagctatgctccgccggcttgagaa 81625
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
|||||||||| || || ||||| ||||||||||| ||||| || || ||||| ||||| |
Sbjct: 80752 agacaatgctggcaaaggctgttgctactgagtgtaaaactacattcttcaacatttcag 80811
Query: 127 cctcgtcgattgtaagcaagtggcg 151
| || || ||||| ||||| |||||
Sbjct: 80812 catcatcaattgttagcaaatggcg 80836
Score = 44.1 bits (22), Expect = 0.13
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 519 gagaaaactgaaggatattctggctctgatattcgcctggtatgcaaggaagcagcaatg 578
||||| |||||||| || ||||| || ||||| || || || ||||| ||||| || |||
Sbjct: 81947 gagaagactgaagggtactctggttcagatatccgtcttgtgtgcaaagaagctgccatg 82006
Query: 579 cagcccctaagacgggtaatggcagttcttgaag 612
|| || |||||||| | ||| ||||||||||||
Sbjct: 82007 caaccactaagacgtcttatgtcagttcttgaag 82040
Score = 44.1 bits (22), Expect = 0.13
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 12 ggtctattatcaccttggaaaggcatattactgtttggtccacctggaac 61
||||| || ||||| ||||||||||| ||||| |||||||| || |||||
Sbjct: 80274 ggtctcttgtcaccatggaaaggcattttactttttggtcccccaggaac 80323
>gb|AZ129984.1|AZ129984 OSJNBb0080N12r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0080N12r, DNA
sequence
Length = 639
Score = 97.6 bits (49), Expect = 1e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 313 agatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaatttac 372
||||||||||||| |||||||||||||| || |||||||||||||| || ||| |||| |
Sbjct: 16 agatggatgggttaactaagacagatgatctcgtttttgttctagccgccacanatttgc 75
Query: 373 catgggagttggatgcagcaatgctgcg 400
||||||| |||||||||||||| ||||
Sbjct: 76 catgggaactggatgcagcaatgttgcg 103
>gb|AU032108.1|AU032108 AU032108 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3537_1A, mRNA sequence
Length = 416
Score = 79.8 bits (40), Expect = 2e-012
Identities = 130/160 (81%)
Strand = Plus / Plus
Query: 262 ctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaatacagatggatg 321
|||| ||||| ||||||||||| || || ||||| ||||||||| | || ||||||||||
Sbjct: 1 ctcgcagtgagcatgaagctagtcgacgcttgaagactgagctactcattcagatggatg 60
Query: 322 ggttgactaagacagatgagcttgtttttgttctagcagcaacaaatttaccatgggagt 381
| ||||| ||||| | || | || ||||| || ||||||||||||||||| |||||
Sbjct: 61 gcttgacaaagacgaacgacttggtatttgtacttgcagcaacaaatttaccttgggaac 120
Query: 382 tggatgcagcaatgctgcgtcggctggagaagcgtattct 421
|||| ||||| ||||| || ||||| ||||| || |||||
Sbjct: 121 tggacgcagctatgctccgccggcttgagaaacggattct 160
>gb|CB640836.1|CB640836 OSJNEa16J19.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa16J19 5', mRNA sequence
Length = 528
Score = 73.8 bits (37), Expect = 1e-010
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 30 aaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagctgtg 89
||||| |||||||| ||||| || ||||| ||||||||||||||||| || |||||||||
Sbjct: 403 aaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaagctgtg 462
Query: 90 gctac 94
|||||
Sbjct: 463 gctac 467
>dbj|AK066938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093A20, full
insert sequence
Length = 2902
Score = 73.8 bits (37), Expect = 1e-010
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 30 aaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagctgtg 89
||||| |||||||| ||||| || ||||| ||||||||||||||||| || |||||||||
Sbjct: 1528 aaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaagctgtg 1587
Query: 90 gctac 94
|||||
Sbjct: 1588 gctac 1592
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
complete sequence
Length = 132243
Score = 73.8 bits (37), Expect = 1e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 30 aaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagctgtg 89
||||| |||||||| ||||| || ||||| ||||||||||||||||| || |||||||||
Sbjct: 51662 aaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaagctgtg 51603
Query: 90 gctac 94
|||||
Sbjct: 51602 gctac 51598
>gb|AACV01006579.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006579, whole
genome shotgun sequence
Length = 24250
Score = 73.8 bits (37), Expect = 1e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 30 aaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagctgtg 89
||||| |||||||| ||||| || ||||| ||||||||||||||||| || |||||||||
Sbjct: 15945 aaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaagctgtg 15886
Query: 90 gctac 94
|||||
Sbjct: 15885 gctac 15881
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 73.8 bits (37), Expect = 1e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 30 aaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagctgtg 89
||||| |||||||| ||||| || ||||| ||||||||||||||||| || |||||||||
Sbjct: 4155706 aaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaagctgtg 4155647
Query: 90 gctac 94
|||||
Sbjct: 4155646 gctac 4155642
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 73.8 bits (37), Expect = 1e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 30 aaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagctgtg 89
||||| |||||||| ||||| || ||||| ||||||||||||||||| || |||||||||
Sbjct: 12896175 aaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaagctgtg 12896116
Query: 90 gctac 94
|||||
Sbjct: 12896115 gctac 12896111
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 73.8 bits (37), Expect = 1e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 30 aaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagctgtg 89
||||| |||||||| ||||| || ||||| ||||||||||||||||| || |||||||||
Sbjct: 13088537 aaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaagctgtg 13088478
Query: 90 gctac 94
|||||
Sbjct: 13088477 gctac 13088473
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 73.8 bits (37), Expect = 1e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 30 aaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagctgtg 89
||||| |||||||| ||||| || ||||| ||||||||||||||||| || |||||||||
Sbjct: 12810209 aaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaagctgtg 12810150
Query: 90 gctac 94
|||||
Sbjct: 12810149 gctac 12810145
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 73.8 bits (37), Expect = 1e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 30 aaaggcatattactgtttggtccacctggaacaggaaagacaatgctagctaaagctgtg 89
||||| |||||||| ||||| || ||||| ||||||||||||||||| || |||||||||
Sbjct: 12813446 aaaggaatattactttttggcccgcctggtacaggaaagacaatgcttgccaaagctgtg 12813387
Query: 90 gctac 94
|||||
Sbjct: 12813386 gctac 12813382
>gb|AU095526.1|AU095526 AU095526 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3537, mRNA sequence
Length = 581
Score = 61.9 bits (31), Expect = 5e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 669 gaagatattgaacttgctttgaggaatacaagaccgtctgctcatcttcatgcacataga 728
||||| || ||| ||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct: 313 gaagacatcgaagttgctttgaggaacacaaggccgtctgcgcatctccatgcacatcgc 372
Query: 729 tacgaaaagttcaaccaagatta 751
|| || ||||| ||||| |||||
Sbjct: 373 tatgagaagtttaaccaggatta 395
>dbj|AK106344.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H02, full
insert sequence
Length = 1696
Score = 48.1 bits (24), Expect = 0.008
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tggtccacctggaacaggaaagac 70
||||||||||||||||||||||||
Sbjct: 690 tggtccacctggaacaggaaagac 713
>gb|AACV01009985.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009985, whole
genome shotgun sequence
Length = 35686
Score = 48.1 bits (24), Expect = 0.008
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 47 tggtccacctggaacaggaaagac 70
||||||||||||||||||||||||
Sbjct: 29415 tggtccacctggaacaggaaagac 29392
>ref|XM_472891.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1446
Score = 48.1 bits (24), Expect = 0.008
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tggtccacctggaacaggaaagac 70
||||||||||||||||||||||||
Sbjct: 666 tggtccacctggaacaggaaagac 689
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 48.1 bits (24), Expect = 0.008
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tggtccacctggaacaggaaagac 70
||||||||||||||||||||||||
Sbjct: 1536853 tggtccacctggaacaggaaagac 1536876
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 48.1 bits (24), Expect = 0.008
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tggtccacctggaacaggaaagac 70
||||||||||||||||||||||||
Sbjct: 1816163 tggtccacctggaacaggaaagac 1816186
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 48.1 bits (24), Expect = 0.008
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tggtccacctggaacaggaaagac 70
||||||||||||||||||||||||
Sbjct: 20960262 tggtccacctggaacaggaaagac 20960285
>emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044K18,
complete sequence
Length = 176615
Score = 48.1 bits (24), Expect = 0.008
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tggtccacctggaacaggaaagac 70
||||||||||||||||||||||||
Sbjct: 97803 tggtccacctggaacaggaaagac 97826
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 48.1 bits (24), Expect = 0.008
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tggtccacctggaacaggaaagac 70
||||||||||||||||||||||||
Sbjct: 23932830 tggtccacctggaacaggaaagac 23932853
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18,
complete sequence
Length = 144720
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 202 atgcaccatctactattttccttgatgagattgat 236
|||||||||||| |||||| ||||||||||||||
Sbjct: 116614 atgcaccatctatcattttcattgatgagattgat 116648
>gb|AACV01021652.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021652, whole
genome shotgun sequence
Length = 21342
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 202 atgcaccatctactattttccttgatgagattgat 236
|||||||||||| |||||| ||||||||||||||
Sbjct: 17553 atgcaccatctatcattttcattgatgagattgat 17587
>ref|NM_196705.1| Oryza sativa (japonica cultivar-group) putative endoplasmic
reticulum membrane fusion protein (OSJNBa0046P18.14),
mRNA
Length = 2454
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 202 atgcaccatctactattttccttgatgagattgat 236
|||||||||||| |||||| ||||||||||||||
Sbjct: 905 atgcaccatctatcattttcattgatgagattgat 939
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,283,423
Number of Sequences: 438736
Number of extensions: 1283423
Number of successful extensions: 6582
Number of sequences better than 0.5: 73
Number of HSP's better than 0.5 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6034
Number of HSP's gapped (non-prelim): 540
length of query: 893
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 872
effective length of database: 2,791,206,460
effective search space: 2433932033120
effective search space used: 2433932033120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)