BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067043.2.1
(834 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK101220.1| Oryza sativa (japonica cultivar-group) cDNA... 295 2e-077
ref|XM_464326.1| Oryza sativa (japonica cultivar-group), mRNA 295 2e-077
dbj|AP004087.3| Oryza sativa (japonica cultivar-group) geno... 103 2e-019
gb|AACV01003484.1| Oryza sativa (japonica cultivar-group) c... 103 2e-019
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 103 2e-019
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 103 2e-019
gb|AQ915527.1|AQ915527 nbeb0058D18f CUGI Rice BAC Library (... 92 6e-016
dbj|AP005473.4| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01015169.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401219.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AK105512.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.47
emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC O... 42 0.47
emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC O... 42 0.47
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 42 0.47
gb|AACV01025341.1| Oryza sativa (japonica cultivar-group) c... 42 0.47
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.47
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.47
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.47
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.47
>dbj|AK101220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031C20, full
insert sequence
Length = 1435
Score = 295 bits (149), Expect = 2e-077
Identities = 373/448 (83%)
Strand = Plus / Plus
Query: 19 acgcaaaggctngacattatcaaaagccagaagatgttccattcttccctcaagatctac 78
|||| ||||| |||| || |||||||||||||||||||||||||| || |||||||| |
Sbjct: 265 acgccaaggccggacaataccaaaagccagaagatgttccattctttccccaagatctcc 324
Query: 79 cctcacctctctttcctacaaagccttccccaaaggtcttgcacccttttgcttcattgg 138
| |||||||| |||||||| || || ||||||||| |||||| ||||||| |||| |
Sbjct: 325 cttcacctctatttcctaccaaagattacccaaaggttttgcactcttttgcatcatcag 384
Query: 139 tcaccgtgaatgatgcaatatggaaaatgtattttgatgaattgctcccgttattcactg 198
||| |||||||||||||||||||| |||||||| | || ||||| || |||||||||
Sbjct: 385 tcagtgtgaatgatgcaatatggaagatgtatttcaacgagttgcttccactattcactg 444
Query: 199 ttgatggtgatgatggcagctatgcacaaacagttgcactggatttagcgtgtctgcagg 258
| ||||| |||||||| | ||||||| ||||||||||| | ||||| || |||||| |||
Sbjct: 445 tggatggagatgatggtaactatgcagaaacagttgcattagattttgcatgtctgaagg 504
Query: 259 ttctatcacaaagaattcatattggtaaatatgttgctgaggtgaagttcaaagacgctc 318
|| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 ccctgtcaagaagaattcatattggtaaatatgttgctgaggtgaagttcaaagatgctt 564
Query: 319 ctcaagaatatagtcgactaataaaagaaaaggacagcaattctctgatggatatgctga 378
| ||||| ||||||| |||||| | |||||| | ||| |||||||| || |||| |
Sbjct: 565 cccaagattatagtccactaatccgtgcaaaggataccaaggctctgatgaatctgctaa 624
Query: 379 cattcaaggctgtggaagagaaggtcaagaagagagtagagaagaaggctaggacgttcg 438
|||||||||| || ||||||||||| || | |||||||||||||||||| |||| || |
Sbjct: 625 cattcaaggcggttgaagagaaggtgaaaaggagagtagagaagaaggccaggatatttg 684
Query: 439 ggcagaacgtcaccttggatgacaatgc 466
| ||||| ||||| ||||| ||||||||
Sbjct: 685 gtcagaatgtcactttggaggacaatgc 712
>ref|XM_464326.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1433
Score = 295 bits (149), Expect = 2e-077
Identities = 373/448 (83%)
Strand = Plus / Plus
Query: 19 acgcaaaggctngacattatcaaaagccagaagatgttccattcttccctcaagatctac 78
|||| ||||| |||| || |||||||||||||||||||||||||| || |||||||| |
Sbjct: 264 acgccaaggccggacaataccaaaagccagaagatgttccattctttccccaagatctcc 323
Query: 79 cctcacctctctttcctacaaagccttccccaaaggtcttgcacccttttgcttcattgg 138
| |||||||| |||||||| || || ||||||||| |||||| ||||||| |||| |
Sbjct: 324 cttcacctctatttcctaccaaagattacccaaaggttttgcactcttttgcatcatcag 383
Query: 139 tcaccgtgaatgatgcaatatggaaaatgtattttgatgaattgctcccgttattcactg 198
||| |||||||||||||||||||| |||||||| | || ||||| || |||||||||
Sbjct: 384 tcagtgtgaatgatgcaatatggaagatgtatttcaacgagttgcttccactattcactg 443
Query: 199 ttgatggtgatgatggcagctatgcacaaacagttgcactggatttagcgtgtctgcagg 258
| ||||| |||||||| | ||||||| ||||||||||| | ||||| || |||||| |||
Sbjct: 444 tggatggagatgatggtaactatgcagaaacagttgcattagattttgcatgtctgaagg 503
Query: 259 ttctatcacaaagaattcatattggtaaatatgttgctgaggtgaagttcaaagacgctc 318
|| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 ccctgtcaagaagaattcatattggtaaatatgttgctgaggtgaagttcaaagatgctt 563
Query: 319 ctcaagaatatagtcgactaataaaagaaaaggacagcaattctctgatggatatgctga 378
| ||||| ||||||| |||||| | |||||| | ||| |||||||| || |||| |
Sbjct: 564 cccaagattatagtccactaatccgtgcaaaggataccaaggctctgatgaatctgctaa 623
Query: 379 cattcaaggctgtggaagagaaggtcaagaagagagtagagaagaaggctaggacgttcg 438
|||||||||| || ||||||||||| || | |||||||||||||||||| |||| || |
Sbjct: 624 cattcaaggcggttgaagagaaggtgaaaaggagagtagagaagaaggccaggatatttg 683
Query: 439 ggcagaacgtcaccttggatgacaatgc 466
| ||||| ||||| ||||| ||||||||
Sbjct: 684 gtcagaatgtcactttggaggacaatgc 711
>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1297_C09
Length = 163378
Score = 103 bits (52), Expect = 2e-019
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 269 aagaattcatattggtaaatatgttgctgaggtgaagttcaaagacgctcctcaagaata 328
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||
Sbjct: 23109 aagaattcatattggtaaatatgttgctgaggtgaagttcaaagatgcttcccaagatta 23050
Query: 329 tagtcgactaat 340
||||| ||||||
Sbjct: 23049 tagtccactaat 23038
Score = 95.6 bits (48), Expect = 4e-017
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 112 aggtcttgcacccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtatt 171
|||| |||||| ||||||| |||| |||| |||||||||||||||||||| |||||||
Sbjct: 23472 aggttttgcactcttttgcatcatcagtcagtgtgaatgatgcaatatggaagatgtatt 23413
Query: 172 ttgatgaattgctcccgttattcactgttgatggtgatgatggcagctatgcacaaacag 231
| | || ||||| || |||||||||| ||||| |||||||| | ||||||| ||||||
Sbjct: 23412 tcaacgagttgcttccactattcactgtggatggagatgatggtaactatgcagaaacag 23353
Query: 232 ttgcactggatttagcgtgtctgcaggt 259
||||| | ||||| || |||||| ||||
Sbjct: 23352 ttgcattagattttgcatgtctgaaggt 23325
Score = 83.8 bits (42), Expect = 1e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 361 ctctgatggatatgctgacattcaaggctgtggaagagaaggtcaagaagagagtagaga 420
|||||||| || |||| ||||||||||| || ||||||||||| || | |||||||||||
Sbjct: 22734 ctctgatgaatctgctaacattcaaggcggttgaagagaaggtgaaaaggagagtagaga 22675
Query: 421 agaaggctaggacgttcgggcagaacgtcaccttggatgacaatgc 466
||||||| |||| || || ||||| ||||| ||||| ||||||||
Sbjct: 22674 agaaggccaggatatttggtcagaatgtcactttggaggacaatgc 22629
Score = 77.8 bits (39), Expect = 9e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 39 caaaagccagaagatgttccattcttccctcaagatctaccctcacctctctttcctac 97
|||||||||||||||||||||||||| || |||||||| || |||||||| ||||||||
Sbjct: 23632 caaaagccagaagatgttccattctttccccaagatctcccttcacctctatttcctac 23574
>gb|AACV01003484.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003484, whole
genome shotgun sequence
Length = 14108
Score = 103 bits (52), Expect = 2e-019
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 269 aagaattcatattggtaaatatgttgctgaggtgaagttcaaagacgctcctcaagaata 328
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||
Sbjct: 4409 aagaattcatattggtaaatatgttgctgaggtgaagttcaaagatgcttcccaagatta 4350
Query: 329 tagtcgactaat 340
||||| ||||||
Sbjct: 4349 tagtccactaat 4338
Score = 95.6 bits (48), Expect = 4e-017
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 112 aggtcttgcacccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtatt 171
|||| |||||| ||||||| |||| |||| |||||||||||||||||||| |||||||
Sbjct: 4772 aggttttgcactcttttgcatcatcagtcagtgtgaatgatgcaatatggaagatgtatt 4713
Query: 172 ttgatgaattgctcccgttattcactgttgatggtgatgatggcagctatgcacaaacag 231
| | || ||||| || |||||||||| ||||| |||||||| | ||||||| ||||||
Sbjct: 4712 tcaacgagttgcttccactattcactgtggatggagatgatggtaactatgcagaaacag 4653
Query: 232 ttgcactggatttagcgtgtctgcaggt 259
||||| | ||||| || |||||| ||||
Sbjct: 4652 ttgcattagattttgcatgtctgaaggt 4625
Score = 83.8 bits (42), Expect = 1e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 361 ctctgatggatatgctgacattcaaggctgtggaagagaaggtcaagaagagagtagaga 420
|||||||| || |||| ||||||||||| || ||||||||||| || | |||||||||||
Sbjct: 4034 ctctgatgaatctgctaacattcaaggcggttgaagagaaggtgaaaaggagagtagaga 3975
Query: 421 agaaggctaggacgttcgggcagaacgtcaccttggatgacaatgc 466
||||||| |||| || || ||||| ||||| ||||| ||||||||
Sbjct: 3974 agaaggccaggatatttggtcagaatgtcactttggaggacaatgc 3929
Score = 77.8 bits (39), Expect = 9e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 39 caaaagccagaagatgttccattcttccctcaagatctaccctcacctctctttcctac 97
|||||||||||||||||||||||||| || |||||||| || |||||||| ||||||||
Sbjct: 4932 caaaagccagaagatgttccattctttccccaagatctcccttcacctctatttcctac 4874
>ref|NT_107176.1| Oryza sativa (japonica cultivar-group)
Length = 1593847
Score = 103 bits (52), Expect = 2e-019
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 269 aagaattcatattggtaaatatgttgctgaggtgaagttcaaagacgctcctcaagaata 328
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||
Sbjct: 1453578 aagaattcatattggtaaatatgttgctgaggtgaagttcaaagatgcttcccaagatta 1453519
Query: 329 tagtcgactaat 340
||||| ||||||
Sbjct: 1453518 tagtccactaat 1453507
Score = 95.6 bits (48), Expect = 4e-017
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 112 aggtcttgcacccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtatt 171
|||| |||||| ||||||| |||| |||| |||||||||||||||||||| |||||||
Sbjct: 1453941 aggttttgcactcttttgcatcatcagtcagtgtgaatgatgcaatatggaagatgtatt 1453882
Query: 172 ttgatgaattgctcccgttattcactgttgatggtgatgatggcagctatgcacaaacag 231
| | || ||||| || |||||||||| ||||| |||||||| | ||||||| ||||||
Sbjct: 1453881 tcaacgagttgcttccactattcactgtggatggagatgatggtaactatgcagaaacag 1453822
Query: 232 ttgcactggatttagcgtgtctgcaggt 259
||||| | ||||| || |||||| ||||
Sbjct: 1453821 ttgcattagattttgcatgtctgaaggt 1453794
Score = 83.8 bits (42), Expect = 1e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 361 ctctgatggatatgctgacattcaaggctgtggaagagaaggtcaagaagagagtagaga 420
|||||||| || |||| ||||||||||| || ||||||||||| || | |||||||||||
Sbjct: 1453203 ctctgatgaatctgctaacattcaaggcggttgaagagaaggtgaaaaggagagtagaga 1453144
Query: 421 agaaggctaggacgttcgggcagaacgtcaccttggatgacaatgc 466
||||||| |||| || || ||||| ||||| ||||| ||||||||
Sbjct: 1453143 agaaggccaggatatttggtcagaatgtcactttggaggacaatgc 1453098
Score = 77.8 bits (39), Expect = 9e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 39 caaaagccagaagatgttccattcttccctcaagatctaccctcacctctctttcctac 97
|||||||||||||||||||||||||| || |||||||| || |||||||| ||||||||
Sbjct: 1454101 caaaagccagaagatgttccattctttccccaagatctcccttcacctctatttcctac 1454043
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 103 bits (52), Expect = 2e-019
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 269 aagaattcatattggtaaatatgttgctgaggtgaagttcaaagacgctcctcaagaata 328
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||
Sbjct: 4568781 aagaattcatattggtaaatatgttgctgaggtgaagttcaaagatgcttcccaagatta 4568722
Query: 329 tagtcgactaat 340
||||| ||||||
Sbjct: 4568721 tagtccactaat 4568710
Score = 95.6 bits (48), Expect = 4e-017
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 112 aggtcttgcacccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtatt 171
|||| |||||| ||||||| |||| |||| |||||||||||||||||||| |||||||
Sbjct: 4569144 aggttttgcactcttttgcatcatcagtcagtgtgaatgatgcaatatggaagatgtatt 4569085
Query: 172 ttgatgaattgctcccgttattcactgttgatggtgatgatggcagctatgcacaaacag 231
| | || ||||| || |||||||||| ||||| |||||||| | ||||||| ||||||
Sbjct: 4569084 tcaacgagttgcttccactattcactgtggatggagatgatggtaactatgcagaaacag 4569025
Query: 232 ttgcactggatttagcgtgtctgcaggt 259
||||| | ||||| || |||||| ||||
Sbjct: 4569024 ttgcattagattttgcatgtctgaaggt 4568997
Score = 83.8 bits (42), Expect = 1e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 361 ctctgatggatatgctgacattcaaggctgtggaagagaaggtcaagaagagagtagaga 420
|||||||| || |||| ||||||||||| || ||||||||||| || | |||||||||||
Sbjct: 4568406 ctctgatgaatctgctaacattcaaggcggttgaagagaaggtgaaaaggagagtagaga 4568347
Query: 421 agaaggctaggacgttcgggcagaacgtcaccttggatgacaatgc 466
||||||| |||| || || ||||| ||||| ||||| ||||||||
Sbjct: 4568346 agaaggccaggatatttggtcagaatgtcactttggaggacaatgc 4568301
Score = 77.8 bits (39), Expect = 9e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 39 caaaagccagaagatgttccattcttccctcaagatctaccctcacctctctttcctac 97
|||||||||||||||||||||||||| || |||||||| || |||||||| ||||||||
Sbjct: 4569304 caaaagccagaagatgttccattctttccccaagatctcccttcacctctatttcctac 4569246
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 103 bits (52), Expect = 2e-019
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 269 aagaattcatattggtaaatatgttgctgaggtgaagttcaaagacgctcctcaagaata 328
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||
Sbjct: 4568781 aagaattcatattggtaaatatgttgctgaggtgaagttcaaagatgcttcccaagatta 4568722
Query: 329 tagtcgactaat 340
||||| ||||||
Sbjct: 4568721 tagtccactaat 4568710
Score = 95.6 bits (48), Expect = 4e-017
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 112 aggtcttgcacccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtatt 171
|||| |||||| ||||||| |||| |||| |||||||||||||||||||| |||||||
Sbjct: 4569144 aggttttgcactcttttgcatcatcagtcagtgtgaatgatgcaatatggaagatgtatt 4569085
Query: 172 ttgatgaattgctcccgttattcactgttgatggtgatgatggcagctatgcacaaacag 231
| | || ||||| || |||||||||| ||||| |||||||| | ||||||| ||||||
Sbjct: 4569084 tcaacgagttgcttccactattcactgtggatggagatgatggtaactatgcagaaacag 4569025
Query: 232 ttgcactggatttagcgtgtctgcaggt 259
||||| | ||||| || |||||| ||||
Sbjct: 4569024 ttgcattagattttgcatgtctgaaggt 4568997
Score = 83.8 bits (42), Expect = 1e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 361 ctctgatggatatgctgacattcaaggctgtggaagagaaggtcaagaagagagtagaga 420
|||||||| || |||| ||||||||||| || ||||||||||| || | |||||||||||
Sbjct: 4568406 ctctgatgaatctgctaacattcaaggcggttgaagagaaggtgaaaaggagagtagaga 4568347
Query: 421 agaaggctaggacgttcgggcagaacgtcaccttggatgacaatgc 466
||||||| |||| || || ||||| ||||| ||||| ||||||||
Sbjct: 4568346 agaaggccaggatatttggtcagaatgtcactttggaggacaatgc 4568301
Score = 77.8 bits (39), Expect = 9e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 39 caaaagccagaagatgttccattcttccctcaagatctaccctcacctctctttcctac 97
|||||||||||||||||||||||||| || |||||||| || |||||||| ||||||||
Sbjct: 4569304 caaaagccagaagatgttccattctttccccaagatctcccttcacctctatttcctac 4569246
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 103 bits (52), Expect = 2e-019
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 269 aagaattcatattggtaaatatgttgctgaggtgaagttcaaagacgctcctcaagaata 328
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||
Sbjct: 4487730 aagaattcatattggtaaatatgttgctgaggtgaagttcaaagatgcttcccaagatta 4487671
Query: 329 tagtcgactaat 340
||||| ||||||
Sbjct: 4487670 tagtccactaat 4487659
Score = 95.6 bits (48), Expect = 4e-017
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 112 aggtcttgcacccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtatt 171
|||| |||||| ||||||| |||| |||| |||||||||||||||||||| |||||||
Sbjct: 4488093 aggttttgcactcttttgcatcatcagtcagtgtgaatgatgcaatatggaagatgtatt 4488034
Query: 172 ttgatgaattgctcccgttattcactgttgatggtgatgatggcagctatgcacaaacag 231
| | || ||||| || |||||||||| ||||| |||||||| | ||||||| ||||||
Sbjct: 4488033 tcaacgagttgcttccactattcactgtggatggagatgatggtaactatgcagaaacag 4487974
Query: 232 ttgcactggatttagcgtgtctgcaggt 259
||||| | ||||| || |||||| ||||
Sbjct: 4487973 ttgcattagattttgcatgtctgaaggt 4487946
Score = 83.8 bits (42), Expect = 1e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 361 ctctgatggatatgctgacattcaaggctgtggaagagaaggtcaagaagagagtagaga 420
|||||||| || |||| ||||||||||| || ||||||||||| || | |||||||||||
Sbjct: 4487355 ctctgatgaatctgctaacattcaaggcggttgaagagaaggtgaaaaggagagtagaga 4487296
Query: 421 agaaggctaggacgttcgggcagaacgtcaccttggatgacaatgc 466
||||||| |||| || || ||||| ||||| ||||| ||||||||
Sbjct: 4487295 agaaggccaggatatttggtcagaatgtcactttggaggacaatgc 4487250
Score = 77.8 bits (39), Expect = 9e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 39 caaaagccagaagatgttccattcttccctcaagatctaccctcacctctctttcctac 97
|||||||||||||||||||||||||| || |||||||| || |||||||| ||||||||
Sbjct: 4488253 caaaagccagaagatgttccattctttccccaagatctcccttcacctctatttcctac 4488195
>gb|AQ915527.1|AQ915527 nbeb0058D18f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0058D18f, DNA sequence
Length = 802
Score = 91.7 bits (46), Expect = 6e-016
Identities = 118/142 (83%)
Strand = Plus / Minus
Query: 112 aggtcttgcacccttttgcttcattggtcaccgtgaatgatgcaatatggaaaatgtatt 171
|||| |||||| ||||||| |||| |||| |||||||||||||||||||| |||||||
Sbjct: 398 aggttttgcactcttttgcatcatcagtcagtgtgaatgatgcaatatggaagatgtatt 339
Query: 172 ttgatgaattgctcccgttattcactgttgatggtgatgatggcagctatgcacaaacag 231
| | || ||||| || |||||||||| ||||| |||||||| | ||||||| ||||||
Sbjct: 338 tcaacgagttgcttccactattcactgtggatggagatgatggtaactatgcagaaacag 279
Query: 232 ttgcactggatttagcgtgtct 253
||||| | ||||| || |||||
Sbjct: 278 ttgcattagattttgcatgtct 257
Score = 77.8 bits (39), Expect = 9e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 39 caaaagccagaagatgttccattcttccctcaagatctaccctcacctctctttcctac 97
|||||||||||||||||||||||||| || |||||||| || |||||||| ||||||||
Sbjct: 558 caaaagccagaagatgttccattctttccccaagatctcccttcacctctatttcctac 500
>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0077B15
Length = 139345
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 144 gtgaatgatgcaatatggaaaatgtattt 172
|||||||||||||||||||| ||||||||
Sbjct: 115363 gtgaatgatgcaatatggaagatgtattt 115391
>gb|AACV01015169.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015169, whole
genome shotgun sequence
Length = 6017
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 144 gtgaatgatgcaatatggaaaatgtattt 172
|||||||||||||||||||| ||||||||
Sbjct: 2925 gtgaatgatgcaatatggaagatgtattt 2897
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 144 gtgaatgatgcaatatggaaaatgtattt 172
|||||||||||||||||||| ||||||||
Sbjct: 2368427 gtgaatgatgcaatatggaagatgtattt 2368455
>gb|CH401219.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000056
genomic scaffold, whole genome shotgun sequence
Length = 1384745
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 144 gtgaatgatgcaatatggaaaatgtattt 172
|||||||||||||||||||| ||||||||
Sbjct: 943685 gtgaatgatgcaatatggaagatgtattt 943713
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 144 gtgaatgatgcaatatggaaaatgtattt 172
|||||||||||||||||||| ||||||||
Sbjct: 2375589 gtgaatgatgcaatatggaagatgtattt 2375617
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 144 gtgaatgatgcaatatggaaaatgtattt 172
|||||||||||||||||||| ||||||||
Sbjct: 2412355 gtgaatgatgcaatatggaagatgtattt 2412383
>dbj|AK105512.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-E07, full
insert sequence
Length = 1348
Score = 42.1 bits (21), Expect = 0.47
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 514 agctgtatgatcagtgggtgatgccactgaccaagga 550
|||||||||| ||||| | |||||||||||||||||
Sbjct: 988 agctgtatgacaagtggatcatgccactgaccaagga 1024
>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 144767
Score = 42.1 bits (21), Expect = 0.47
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 514 agctgtatgatcagtgggtgatgccactgaccaagga 550
|||||||||| ||||| | |||||||||||||||||
Sbjct: 16550 agctgtatgacaagtggatcatgccactgaccaagga 16514
>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 176388
Score = 42.1 bits (21), Expect = 0.47
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 514 agctgtatgatcagtgggtgatgccactgaccaagga 550
|||||||||| ||||| | |||||||||||||||||
Sbjct: 130765 agctgtatgacaagtggatcatgccactgaccaagga 130729
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 42.1 bits (21), Expect = 0.47
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 514 agctgtatgatcagtgggtgatgccactgaccaagga 550
|||||||||| ||||| | |||||||||||||||||
Sbjct: 128218 agctgtatgacaagtggatcatgccactgaccaagga 128254
>gb|AACV01025341.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025341, whole
genome shotgun sequence
Length = 39984
Score = 42.1 bits (21), Expect = 0.47
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 514 agctgtatgatcagtgggtgatgccactgaccaagga 550
|||||||||| ||||| | |||||||||||||||||
Sbjct: 6877 agctgtatgacaagtggatcatgccactgaccaagga 6913
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119
genomic scaffold, whole genome shotgun sequence
Length = 4546750
Score = 42.1 bits (21), Expect = 0.47
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 514 agctgtatgatcagtgggtgatgccactgaccaagga 550
|||||||||| ||||| | |||||||||||||||||
Sbjct: 993003 agctgtatgacaagtggatcatgccactgaccaagga 993039
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 42.1 bits (21), Expect = 0.47
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 514 agctgtatgatcagtgggtgatgccactgaccaagga 550
|||||||||| ||||| | |||||||||||||||||
Sbjct: 20176649 agctgtatgacaagtggatcatgccactgaccaagga 20176685
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 42.1 bits (21), Expect = 0.47
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 514 agctgtatgatcagtgggtgatgccactgaccaagga 550
|||||||||| ||||| | |||||||||||||||||
Sbjct: 23956631 agctgtatgacaagtggatcatgccactgaccaagga 23956667
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 42.1 bits (21), Expect = 0.47
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 514 agctgtatgatcagtgggtgatgccactgaccaagga 550
|||||||||| ||||| | |||||||||||||||||
Sbjct: 23884837 agctgtatgacaagtggatcatgccactgaccaagga 23884873
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,217,729
Number of Sequences: 438736
Number of extensions: 1217729
Number of successful extensions: 8458
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8257
Number of HSP's gapped (non-prelim): 201
length of query: 834
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 813
effective length of database: 2,791,206,460
effective search space: 2269250851980
effective search space used: 2269250851980
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)