BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3062418.2.1
(851 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA... 454 e-125
dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA... 454 e-125
dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA... 454 e-125
ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA 454 e-125
gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, co... 446 e-123
dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA... 446 e-123
gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (j... 428 e-117
gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (j... 375 e-101
gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (j... 375 e-101
gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (j... 375 e-101
gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germinati... 361 4e-097
gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germinati... 351 4e-094
gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germinati... 351 4e-094
gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (j... 341 4e-091
gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (j... 341 4e-091
gb|CB668192.1|CB668192 OSJNEd15O19.r OSJNEd Oryza sativa (j... 311 3e-082
gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (j... 307 5e-081
gb|CB648778.1|CB648778 OSJNEb12F12.r OSJNEb Oryza sativa (j... 303 8e-080
gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (j... 264 7e-068
gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering s... 260 1e-066
gb|C25358.1|C25358 C25358 Rice shoot Oryza sativa (japonica... 228 4e-057
gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (jap... 218 4e-054
gb|CF304361.1|CF304361 ABF1--04-M08.g1 ABF3-overexpressing ... 214 6e-053
gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (ja... 212 2e-052
gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (j... 212 2e-052
gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA ... 212 2e-052
gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 ... 212 2e-052
gb|AACV01007733.1| Oryza sativa (japonica cultivar-group) c... 212 2e-052
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 212 2e-052
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 212 2e-052
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
gb|AC091670.7| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
gb|D24663.1|D24663 RICR2336A Rice root Oryza sativa (japoni... 200 9e-049
gb|CF312197.1|CF312197 ABF--07-M20.b1 ABF3-overexpressing t... 200 9e-049
gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sati... 194 5e-047
gb|CF312911.1|CF312911 ABF--08-N15.b1 ABF3-overexpressing t... 194 5e-047
gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda ph... 194 5e-047
gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3... 180 8e-043
gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3... 178 3e-042
gb|AU092227.1|AU092227 AU092227 Rice callus Oryza sativa (j... 178 3e-042
gb|AU066086.2|AU066086 AU066086 Rice shoot Oryza sativa (ja... 172 2e-040
gb|CB643858.1|CB643858 OSJNEb04M14.r OSJNEb Oryza sativa (j... 159 3e-036
dbj|AG214794.1| Oryza sativa (japonica cultivar-group) DNA,... 157 1e-035
gb|AU222984.1|AU222984 AU222984 Rice shoot Oryza sativa (ja... 157 1e-035
gb|AU032064.2|AU032064 AU032064 Rice root Oryza sativa (jap... 155 5e-035
gb|CV731446.1|CV731446 FLO--05-H19.g1 Rice flower lambda ph... 151 7e-034
gb|AACV01007734.1| Oryza sativa (japonica cultivar-group) c... 137 1e-029
gb|AU033196.1|AU033196 AU033196 Rice shoot Oryza sativa (ja... 135 4e-029
gb|CF303247.1|CF303247 ABF1--01-L23.g1 ABF3-overexpressing ... 133 2e-028
gb|AU029514.1|AU029514 AU029514 Rice panicle shorter than 3... 131 7e-028
gb|AU174381.1|AU174381 AU174381 Rice shoot Oryza sativa (ja... 109 2e-021
gb|CF312247.1|CF312247 ABF--07-N23.b1 ABF3-overexpressing t... 105 4e-020
dbj|AK059517.1| Oryza sativa (japonica cultivar-group) cDNA... 105 4e-020
dbj|AK105850.1| Oryza sativa (japonica cultivar-group) cDNA... 105 4e-020
dbj|AK120790.1| Oryza sativa (japonica cultivar-group) cDNA... 105 4e-020
ref|XM_469438.1| Oryza sativa (japonica cultivar-group), mRNA 105 4e-020
gb|AU097647.1|AU097647 AU097647 Rice shoot Oryza sativa (ja... 96 4e-017
gb|C72237.1|C72237 C72237 Rice panicle at flowering stage O... 86 4e-014
gb|CA998259.1|CA998259 S234E_C10 Rice cold stress germinati... 78 9e-012
gb|CA998261.1|CA998261 S234E_C12 Rice cold stress germinati... 78 9e-012
gb|CF304479.1|CF304479 ABF1--05-B14.g1 ABF3-overexpressing ... 78 9e-012
gb|CF312198.1|CF312198 ABF--07-M20.g1 ABF3-overexpressing t... 72 5e-010
gb|C27840.1|C27840 C27840 Rice callus cDNA Oryza sativa (ja... 66 3e-008
gb|D39779.1|D39779 RICS1369A Rice shoot Oryza sativa (japon... 64 1e-007
gb|AU071104.1|AU071104 AU071104 Rice cDNA from young root O... 64 1e-007
gb|AU070800.2|AU070800 AU070800 Rice cDNA from young root O... 64 1e-007
gb|AU031958.1|AU031958 AU031958 Rice root Oryza sativa (jap... 60 2e-006
gb|C97305.1|C97305 C97305 Rice callus Oryza sativa (japonic... 56 3e-005
gb|AU181125.1|AU181125 AU181125 Rice shoot Oryza sativa (ja... 56 3e-005
gb|C98908.1|C98908 C98908 Rice panicle at flowering stage O... 50 0.002
dbj|AK060988.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK069177.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
ref|NM_193731.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
gb|AU092735.1|AU092735 AU092735 Rice callus Oryza sativa (j... 48 0.008
gb|AU093914.1|AU093914 AU093914 Rice panicle at flowering s... 48 0.008
gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbar... 48 0.008
gb|AACV01006514.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 48 0.008
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|AQ864137.1|AQ864137 nbeb0022F21r CUGI Rice BAC Library (... 46 0.031
gb|AACV01001283.1| Oryza sativa (japonica cultivar-group) c... 46 0.031
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.031
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 46 0.031
dbj|AP003435.2| Oryza sativa (japonica cultivar-group) geno... 46 0.031
dbj|AP003217.3| Oryza sativa (japonica cultivar-group) geno... 46 0.031
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.031
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.031
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.031
>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full
insert sequence
Length = 1302
Score = 454 bits (229), Expect = e-125
Identities = 566/676 (83%), Gaps = 8/676 (1%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 377 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 436
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| | ||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 437 cttgatccattga-taaatggacattacccgcagataatgcaagatcttgtgaaagatag 495
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
||||||| ||||| ||||| || ||||||| |||||||||||||| || || || ||||
Sbjct: 496 gctgccc-aagttcactcctgaacaagctagattggtcaagggctcggctgactatattg 554
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
| ||||| |||||||| ||||||||| ||||||||||| || || | ||||||| || |
Sbjct: 555 gcatcaaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccga 614
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| || |||||||| |||||||||||| |||||||| | ||||||||||| || |
Sbjct: 615 cgagttactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattg 674
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtga 361
|||||||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||
Sbjct: 675 gaccacaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtga 734
Query: 362 actatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatc 421
|||| | ||||| ||||| || ||||| ||||| ||||||| || |||||||||||||
Sbjct: 735 actacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatc 794
Query: 422 agccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctaca 481
| || | ||| | | || | ||||||| ||| ||||||||| ||||| || |||||||
Sbjct: 795 aacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctaca 854
Query: 482 aaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctact 541
|||||||| | |||||| ||| |||||||| || |||||| | |||||||||||||
Sbjct: 855 ggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctact 914
Query: 542 tcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaa 601
|||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 915 tcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggta 974
Query: 602 tcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctact 661
|||||||||||||||||| ||| |||||| || |||||||||||||| |||||||
Sbjct: 975 tcgtctacgtcgacttcaacac------gctcgagcgccaccccaaggcgtcggcctact 1028
Query: 662 ggttcagagacatgct 677
||||||| ||||||||
Sbjct: 1029 ggttcagggacatgct 1044
>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full
insert sequence
Length = 1894
Score = 454 bits (229), Expect = e-125
Identities = 566/676 (83%), Gaps = 8/676 (1%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 936 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 995
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| | ||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 996 cttgatccattga-taaatggacattacccgcagataatgcaagatcttgtgaaagatag 1054
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
||||||| ||||| ||||| || ||||||| |||||||||||||| || || || ||||
Sbjct: 1055 gctgccc-aagttcactcctgaacaagctagattggtcaagggctcggctgactatattg 1113
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
| ||||| |||||||| ||||||||| ||||||||||| || || | ||||||| || |
Sbjct: 1114 gcatcaaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccga 1173
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| || |||||||| |||||||||||| |||||||| | ||||||||||| || |
Sbjct: 1174 cgagttactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattg 1233
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtga 361
|||||||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||
Sbjct: 1234 gaccacaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtga 1293
Query: 362 actatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatc 421
|||| | ||||| ||||| || ||||| ||||| ||||||| || |||||||||||||
Sbjct: 1294 actacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatc 1353
Query: 422 agccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctaca 481
| || | ||| | | || | ||||||| ||| ||||||||| ||||| || |||||||
Sbjct: 1354 aacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctaca 1413
Query: 482 aaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctact 541
|||||||| | |||||| ||| |||||||| || |||||| | |||||||||||||
Sbjct: 1414 ggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctact 1473
Query: 542 tcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaa 601
|||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 1474 tcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggta 1533
Query: 602 tcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctact 661
|||||||||||||||||| ||| |||||| || |||||||||||||| |||||||
Sbjct: 1534 tcgtctacgtcgacttcaacac------gctcgagcgccaccccaaggcgtcggcctact 1587
Query: 662 ggttcagagacatgct 677
||||||| ||||||||
Sbjct: 1588 ggttcagggacatgct 1603
>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full
insert sequence
Length = 1857
Score = 454 bits (229), Expect = e-125
Identities = 566/676 (83%), Gaps = 8/676 (1%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 932 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 991
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| | ||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 992 cttgatccattga-taaatggacattacccgcagataatgcaagatcttgtgaaagatag 1050
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
||||||| ||||| ||||| || ||||||| |||||||||||||| || || || ||||
Sbjct: 1051 gctgccc-aagttcactcctgaacaagctagattggtcaagggctcggctgactatattg 1109
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
| ||||| |||||||| ||||||||| ||||||||||| || || | ||||||| || |
Sbjct: 1110 gcatcaaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccga 1169
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| || |||||||| |||||||||||| |||||||| | ||||||||||| || |
Sbjct: 1170 cgagttactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattg 1229
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtga 361
|||||||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||
Sbjct: 1230 gaccacaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtga 1289
Query: 362 actatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatc 421
|||| | ||||| ||||| || ||||| ||||| ||||||| || |||||||||||||
Sbjct: 1290 actacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatc 1349
Query: 422 agccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctaca 481
| || | ||| | | || | ||||||| ||| ||||||||| ||||| || |||||||
Sbjct: 1350 aacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctaca 1409
Query: 482 aaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctact 541
|||||||| | |||||| ||| |||||||| || |||||| | |||||||||||||
Sbjct: 1410 ggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctact 1469
Query: 542 tcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaa 601
|||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 1470 tcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggta 1529
Query: 602 tcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctact 661
|||||||||||||||||| ||| |||||| || |||||||||||||| |||||||
Sbjct: 1530 tcgtctacgtcgacttcaacac------gctcgagcgccaccccaaggcgtcggcctact 1583
Query: 662 ggttcagagacatgct 677
||||||| ||||||||
Sbjct: 1584 ggttcagggacatgct 1599
>ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1849
Score = 454 bits (229), Expect = e-125
Identities = 566/676 (83%), Gaps = 8/676 (1%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 930 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 989
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| | ||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 990 cttgatccattga-taaatggacattacccgcagataatgcaagatcttgtgaaagatag 1048
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
||||||| ||||| ||||| || ||||||| |||||||||||||| || || || ||||
Sbjct: 1049 gctgccc-aagttcactcctgaacaagctagattggtcaagggctcggctgactatattg 1107
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
| ||||| |||||||| ||||||||| ||||||||||| || || | ||||||| || |
Sbjct: 1108 gcatcaaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccga 1167
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| || |||||||| |||||||||||| |||||||| | ||||||||||| || |
Sbjct: 1168 cgagttactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattg 1227
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtga 361
|||||||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||
Sbjct: 1228 gaccacaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtga 1287
Query: 362 actatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatc 421
|||| | ||||| ||||| || ||||| ||||| ||||||| || |||||||||||||
Sbjct: 1288 actacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatc 1347
Query: 422 agccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctaca 481
| || | ||| | | || | ||||||| ||| ||||||||| ||||| || |||||||
Sbjct: 1348 aacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctaca 1407
Query: 482 aaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctact 541
|||||||| | |||||| ||| |||||||| || |||||| | |||||||||||||
Sbjct: 1408 ggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctact 1467
Query: 542 tcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaa 601
|||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 1468 tcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggta 1527
Query: 602 tcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctact 661
|||||||||||||||||| ||| |||||| || |||||||||||||| |||||||
Sbjct: 1528 tcgtctacgtcgacttcaacac------gctcgagcgccaccccaaggcgtcggcctact 1581
Query: 662 ggttcagagacatgct 677
||||||| ||||||||
Sbjct: 1582 ggttcagggacatgct 1597
>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds
Length = 1909
Score = 446 bits (225), Expect = e-123
Identities = 565/676 (83%), Gaps = 8/676 (1%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 941 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 1000
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| | ||||||||||||| | ||||||||||||||| |||||||||| ||
Sbjct: 1001 cttgatccattga-taaatggacattactcgcagataatgcaagatcttgtgaaagatag 1059
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
||||||| ||||| ||||| || ||||||| |||||||||||||| || || || ||||
Sbjct: 1060 gctgccc-aagttcactcctgaacaagctagattggtcaagggctcggctgactatattg 1118
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
| ||||| |||||||| ||||||||| ||||||||||| || || | ||||||| || |
Sbjct: 1119 gcatcaaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccga 1178
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| || |||||||| |||||||||||| |||||||| | ||||||||||| || |
Sbjct: 1179 cgagttactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattg 1238
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtga 361
|||||||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||
Sbjct: 1239 gaccacaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtga 1298
Query: 362 actatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatc 421
|||| | ||||| ||||| || ||||| ||||| ||||||| || |||||||||||||
Sbjct: 1299 actacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatc 1358
Query: 422 agccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctaca 481
| || | ||| | | || | ||||||| ||| ||||||||| ||||| || |||||||
Sbjct: 1359 aacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctaca 1418
Query: 482 aaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctact 541
|||||||| | |||||| ||| |||||||| || |||||| | |||||||||||||
Sbjct: 1419 ggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctact 1478
Query: 542 tcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaa 601
|||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 1479 tcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggta 1538
Query: 602 tcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctact 661
|||||||||||||||||| ||| |||||| || |||||||||||||| |||||||
Sbjct: 1539 tcgtctacgtcgacttcaacac------gctcgagcgccaccccaaggcgtcggcctact 1592
Query: 662 ggttcagagacatgct 677
||||||| ||||||||
Sbjct: 1593 ggttcagggacatgct 1608
>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full
insert sequence
Length = 1846
Score = 446 bits (225), Expect = e-123
Identities = 565/676 (83%), Gaps = 8/676 (1%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 933 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 992
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| | ||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 993 cttgatccattga-taaatggacattacccgcagataatgcaagatcttgtgaaagatag 1051
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
||||||| ||||| ||||| || ||||||| |||||||||||||| || || || ||||
Sbjct: 1052 gctgccc-aagttcactcctgaacaagctagattggtcaagggctcggctgactatattg 1110
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
| ||||| |||||||| ||||||||| ||||||||||| || || | ||||||| || |
Sbjct: 1111 gcatcaaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccga 1170
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| || |||||||| |||||||||||| |||||||| | ||||||||||| || |
Sbjct: 1171 cgagttactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattg 1230
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtga 361
|||||||||| ||||| || |||||||||||||| ||| ||||||||||| ||||||
Sbjct: 1231 gaccacaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgg 1290
Query: 362 actatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatc 421
|||| | ||||| ||||| || ||||| ||||| ||||||| || |||||||||||||
Sbjct: 1291 actacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatc 1350
Query: 422 agccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctaca 481
| || | ||| | | || | ||||||| ||| ||||||||| ||||| || |||||||
Sbjct: 1351 aacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctaca 1410
Query: 482 aaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctact 541
|||||||| | |||||| ||| |||||||| || |||||| | |||||||||||||
Sbjct: 1411 ggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctact 1470
Query: 542 tcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaa 601
|||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 1471 tcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggta 1530
Query: 602 tcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctact 661
|||||||||||||||||| ||| |||||| || |||||||||||||| |||||||
Sbjct: 1531 tcgtctacgtcgacttcaacac------gctcgagcgccaccccaaggcgtcggcctact 1584
Query: 662 ggttcagagacatgct 677
||||||| ||||||||
Sbjct: 1585 ggttcagggacatgct 1600
>gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10A12 5', mRNA sequence
Length = 796
Score = 428 bits (216), Expect = e-117
Identities = 524/624 (83%), Gaps = 2/624 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 174 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 233
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| | ||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 234 cttgatccattga-taaatggacattacccgcagataatgcaagatcttgtgaaagatag 292
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
||||||| ||||| ||||| || ||||||| |||||||||||||| || || || ||||
Sbjct: 293 gctgccc-aagttcactcctgaacaagctagattggtcaagggctcggctgactatattg 351
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
| ||||| |||||||| ||||||||| ||||||||||| || || | ||||||| || |
Sbjct: 352 gcatcaaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccga 411
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| || |||||||| |||||||||||| |||||||| | ||||||||||| || |
Sbjct: 412 cgagttactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattg 471
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtga 361
|||||||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||
Sbjct: 472 gaccacaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtga 531
Query: 362 actatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatc 421
|||| | ||||| ||||| || ||||| ||||| ||||||| || |||||||||||||
Sbjct: 532 actacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatc 591
Query: 422 agccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctaca 481
| || | ||| | | || | ||||||| ||| ||||||||| ||||| || |||||||
Sbjct: 592 aacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctaca 651
Query: 482 aaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctact 541
|||||||| | |||||| ||| |||||||| || |||||| | |||||||||||||
Sbjct: 652 ggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctact 711
Query: 542 tcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaa 601
|||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 712 tcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggta 771
Query: 602 tcgtctacgtcgacttcagcacgc 625
|||||||||||||||||| |||||
Sbjct: 772 tcgtctacgtcgacttcaacacgc 795
>gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08N06 3', mRNA sequence
Length = 835
Score = 375 bits (189), Expect = e-101
Identities = 486/584 (83%), Gaps = 7/584 (1%)
Strand = Plus / Minus
Query: 94 agataatgcaagatattgtgaaagagaggctgccccaagtttactccggagcaagctaag 153
|||||||||||||| |||||||||| ||||||||| ||||| ||||| || |||||||
Sbjct: 835 agataatgcaagatcttgtgaaagataggctgccc-aagttcactcctgaacaagctaga 777
Query: 154 ttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagctacgtgaag 213
|||||||||||||| || || || ||||| ||||| |||||||| ||||||||| |||||
Sbjct: 776 ttggtcaagggctcggctgactatattggcatcaaccaatacacagctagctacatgaag 717
Query: 214 ggccagaaactgctccagcagaagcctactagctactcagctgattggcaggttcaatat 273
|||||| || || | ||||||| || || || |||||||| |||||||||||| |||
Sbjct: 716 ggccagcaattgatgcagcagacaccgacgagttactcagccgattggcaggttacctat 657
Query: 274 gttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggctttacatc 333
||||| | ||||||||||| || ||||||||||| ||||| || ||||||||||||
Sbjct: 656 gtttttgcgaaaaacggcaaaccaattggaccacaggcaaattctaattggctttacatc 597
Query: 334 gtcccagaagggatgtacggttgtgtgaactatctgaagcacaagtatggaaatccaaca 393
|| ||| ||||||||||| ||||||||||| | ||||| ||||| || ||||| |||
Sbjct: 596 gtgccatgggggatgtacggatgtgtgaactacatcaagcagaagtacgggaatccgaca 537
Query: 394 gttttcataaccgagaacggaatggatcagccaggaaacttgactcgtggccagtacctg 453
|| ||||||| || |||||||||||||| || | ||| | | || | ||||||| ||
Sbjct: 536 gtcgtcataactgaaaacggaatggatcaacctgcgaacctcagccgcgaccagtacttg 477
Query: 454 cacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgaggaaagccatc 513
| ||||||||| ||||| || ||||||| |||||||| | |||||| ||| ||||||
Sbjct: 476 cgcgacaccacgagggttcatttctacaggagctacctcacccagctgaagaaggccatc 417
Query: 514 gatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaacttcgagtgg 573
|| || |||||| | ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 416 gacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaacttcgagtgg 357
Query: 574 cagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctc 633
| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||
Sbjct: 356 ctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac------gctc 303
Query: 634 gaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 302 gagcgccaccccaaggcgtcggcctactggttcagggacatgct 259
>gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16B19 3', mRNA sequence
Length = 835
Score = 375 bits (189), Expect = e-101
Identities = 486/584 (83%), Gaps = 7/584 (1%)
Strand = Plus / Minus
Query: 94 agataatgcaagatattgtgaaagagaggctgccccaagtttactccggagcaagctaag 153
|||||||||||||| |||||||||| ||||||||| ||||| ||||| || |||||||
Sbjct: 835 agataatgcaagatcttgtgaaagataggctgccc-aagttcactcctgaacaagctaga 777
Query: 154 ttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagctacgtgaag 213
|||||||||||||| || || || ||||| ||||| |||||||| ||||||||| |||||
Sbjct: 776 ttggtcaagggctcggctgactatattggcatcaaccaatacacagctagctacatgaag 717
Query: 214 ggccagaaactgctccagcagaagcctactagctactcagctgattggcaggttcaatat 273
|||||| || || | ||||||| || || || |||||||| |||||||||||| |||
Sbjct: 716 ggccagcaattgatgcagcagacaccgacgagttactcagccgattggcaggttacctat 657
Query: 274 gttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggctttacatc 333
||||| | ||||||||||| || ||||||||||| ||||| || ||||||||||||
Sbjct: 656 gtttttgcgaaaaacggcaaaccaattggaccacaggcaaattctaattggctttacatc 597
Query: 334 gtcccagaagggatgtacggttgtgtgaactatctgaagcacaagtatggaaatccaaca 393
|| ||| ||||||||||| ||||||||||| | ||||| ||||| || ||||| |||
Sbjct: 596 gtgccatgggggatgtacggatgtgtgaactacatcaagcagaagtacgggaatccgaca 537
Query: 394 gttttcataaccgagaacggaatggatcagccaggaaacttgactcgtggccagtacctg 453
|| ||||||| || |||||||||||||| || | ||| | | || | ||||||| ||
Sbjct: 536 gtcgtcataactgaaaacggaatggatcaacctgcgaacctcagccgcgaccagtacttg 477
Query: 454 cacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgaggaaagccatc 513
| ||||||||| ||||| || ||||||| |||||||| | |||||| ||| ||||||
Sbjct: 476 cgcgacaccacgagggttcatttctacaggagctacctcacccagctgaagaaggccatc 417
Query: 514 gatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaacttcgagtgg 573
|| || |||||| | ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 416 gacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaacttcgagtgg 357
Query: 574 cagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctc 633
| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||
Sbjct: 356 ctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac------gctc 303
Query: 634 gaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 302 gagcgccaccccaaggcgtcggcctactggttcagggacatgct 259
>gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10E15 3', mRNA sequence
Length = 828
Score = 375 bits (189), Expect = e-101
Identities = 486/584 (83%), Gaps = 7/584 (1%)
Strand = Plus / Minus
Query: 94 agataatgcaagatattgtgaaagagaggctgccccaagtttactccggagcaagctaag 153
|||||||||||||| |||||||||| ||||||||| ||||| ||||| || |||||||
Sbjct: 828 agataatgcaagatcttgtgaaagataggctgccc-aagttcactcctgaacaagctaga 770
Query: 154 ttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagctacgtgaag 213
|||||||||||||| || || || ||||| ||||| |||||||| ||||||||| |||||
Sbjct: 769 ttggtcaagggctcggctgactatattggcatcaaccaatacacagctagctacatgaag 710
Query: 214 ggccagaaactgctccagcagaagcctactagctactcagctgattggcaggttcaatat 273
|||||| || || | ||||||| || || || |||||||| |||||||||||| |||
Sbjct: 709 ggccagcaattgatgcagcagacaccgacgagttactcagccgattggcaggttacctat 650
Query: 274 gttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggctttacatc 333
||||| | ||||||||||| || ||||||||||| ||||| || ||||||||||||
Sbjct: 649 gtttttgcgaaaaacggcaaaccaattggaccacaggcaaattctaattggctttacatc 590
Query: 334 gtcccagaagggatgtacggttgtgtgaactatctgaagcacaagtatggaaatccaaca 393
|| ||| ||||||||||| ||||||||||| | ||||| ||||| || ||||| |||
Sbjct: 589 gtgccatgggggatgtacggatgtgtgaactacatcaagcagaagtacgggaatccgaca 530
Query: 394 gttttcataaccgagaacggaatggatcagccaggaaacttgactcgtggccagtacctg 453
|| ||||||| || |||||||||||||| || | ||| | | || | ||||||| ||
Sbjct: 529 gtcgtcataactgaaaacggaatggatcaacctgcgaacctcagccgcgaccagtacttg 470
Query: 454 cacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgaggaaagccatc 513
| ||||||||| ||||| || ||||||| |||||||| | |||||| ||| ||||||
Sbjct: 469 cgcgacaccacgagggttcatttctacaggagctacctcacccagctgaagaaggccatc 410
Query: 514 gatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaacttcgagtgg 573
|| || |||||| | ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 409 gacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaacttcgagtgg 350
Query: 574 cagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctc 633
| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||
Sbjct: 349 ctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac------gctc 296
Query: 634 gaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 295 gagcgccaccccaaggcgtcggcctactggttcagggacatgct 252
>gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 679
Score = 361 bits (182), Expect = 4e-097
Identities = 487/586 (83%), Gaps = 2/586 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 96 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 155
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| | ||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 156 cttgatccattga-taaatggacattacccgcagataatgcaagatcttgtgaaagatag 214
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
||||||| ||||| ||||| || ||||||| |||||||||||||| || || || ||||
Sbjct: 215 gctgccc-aagttcactcctgaacaagctagattggtcaagggctcggctgactatattg 273
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
| ||||| |||||||| ||||||||| ||||||||||| || || | ||||||| || |
Sbjct: 274 gcatcaaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccga 333
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| || |||||||| |||||||||||| |||||||| | ||||||||||| || |
Sbjct: 334 cgagttactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattg 393
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtga 361
|||||||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||
Sbjct: 394 gaccacaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtga 453
Query: 362 actatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatc 421
|||| | ||||| ||||| || ||||| ||||| ||||||| || |||||||||||||
Sbjct: 454 actacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatc 513
Query: 422 agccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctaca 481
| || | ||| | | || | ||||||| ||| ||||||||| ||||| || |||||||
Sbjct: 514 aacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctaca 573
Query: 482 aaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctact 541
|||||||| | |||||| ||| |||||||| || |||||| | |||||||||||||
Sbjct: 574 ggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctact 633
Query: 542 tcgcttggtctctcctcgacaacttcgagtggcagtcaggttacac 587
|||| ||||||||||| |||||||||||||||| |||| |||||||
Sbjct: 634 tcgcctggtctctcctggacaacttcgagtggctgtcacgttacac 679
>gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 667
Score = 351 bits (177), Expect = 4e-094
Identities = 476/573 (83%), Gaps = 2/573 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 95 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 154
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| | ||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 155 cttgatccattga-taaatggacattacccgcagataatgcaagatcttgtgaaagatag 213
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
||||||| ||||| ||||| || ||||||| |||||||||||||| || || || ||||
Sbjct: 214 gctgccc-aagttcactcctgaacaagctagattggtcaagggctcggctgactatattg 272
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
| ||||| |||||||| ||||||||| ||||||||||| || || | ||||||| || |
Sbjct: 273 gcatcaaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccga 332
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| || |||||||| |||||||||||| |||||||| | ||||||||||| || |
Sbjct: 333 cgagttactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattg 392
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtga 361
|||||||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||
Sbjct: 393 gaccacaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtga 452
Query: 362 actatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatc 421
|||| | ||||| ||||| || ||||| ||||| ||||||| || |||||||||||||
Sbjct: 453 actacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatc 512
Query: 422 agccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctaca 481
| || | ||| | | || | ||||||| ||| ||||||||| ||||| || |||||||
Sbjct: 513 aacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctaca 572
Query: 482 aaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctact 541
|||||||| | |||||| ||| |||||||| || |||||| | |||||||||||||
Sbjct: 573 ggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctact 632
Query: 542 tcgcttggtctctcctcgacaacttcgagtggc 574
|||| ||||||||||| ||||||||||||||||
Sbjct: 633 tcgcctggtctctcctggacaacttcgagtggc 665
>gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 668
Score = 351 bits (177), Expect = 4e-094
Identities = 476/573 (83%), Gaps = 2/573 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 95 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 154
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| | ||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 155 cttgatccattga-taaatggacattacccgcagataatgcaagatcttgtgaaagatag 213
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
||||||| ||||| ||||| || ||||||| |||||||||||||| || || || ||||
Sbjct: 214 gctgccc-aagttcactcctgaacaagctagattggtcaagggctcggctgactatattg 272
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
| ||||| |||||||| ||||||||| ||||||||||| || || | ||||||| || |
Sbjct: 273 gcatcaaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccga 332
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| || |||||||| |||||||||||| |||||||| | ||||||||||| || |
Sbjct: 333 cgagttactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattg 392
Query: 302 gaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtga 361
|||||||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||
Sbjct: 393 gaccacaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtga 452
Query: 362 actatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatc 421
|||| | ||||| ||||| || ||||| ||||| ||||||| || |||||||||||||
Sbjct: 453 actacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatc 512
Query: 422 agccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctaca 481
| || | ||| | | || | ||||||| ||| ||||||||| ||||| || |||||||
Sbjct: 513 aacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctaca 572
Query: 482 aaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctact 541
|||||||| | |||||| ||| |||||||| || |||||| | |||||||||||||
Sbjct: 573 ggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctact 632
Query: 542 tcgcttggtctctcctcgacaacttcgagtggc 574
|||| ||||||||||| ||||||||||||||||
Sbjct: 633 tcgcctggtctctcctggacaacttcgagtggc 665
>gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03L22 3', mRNA sequence
Length = 813
Score = 341 bits (172), Expect = 4e-091
Identities = 456/551 (82%), Gaps = 6/551 (1%)
Strand = Plus / Minus
Query: 127 cccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattgggatc 186
|||||||| ||||| || ||||||| |||||||||||||| || || || ||||| |||
Sbjct: 804 cccaagttcactcctgaacaagctagattggtcaagggctcggctgactatattggcatc 745
Query: 187 aatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagcctactagc 246
|| |||||||| ||||||||| ||||||||||| || || | ||||||| || || ||
Sbjct: 744 aaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccgacgagt 685
Query: 247 tactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcggacca 306
|||||||| |||||||||||| |||||||| | ||||||||||| || ||||||
Sbjct: 684 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 625
Query: 307 caggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactat 366
||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 624 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 565
Query: 367 ctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatcagcca 426
| ||||| ||||| || ||||| ||||| ||||||| || |||||||||||||| ||
Sbjct: 564 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 505
Query: 427 ggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctacaaaggc 486
| ||| | | || | ||||||| ||| ||||||||| ||||| || ||||||| ||
Sbjct: 504 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 445
Query: 487 tacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgct 546
|||||| | |||||| ||| |||||||| || |||||| | |||||||||||||||||
Sbjct: 444 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 385
Query: 547 tggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtc 606
||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 384 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 325
Query: 607 tacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactggttc 666
||||||||||||| ||| |||||| || |||||||||||||| ||||||||||||
Sbjct: 324 tacgtcgacttcaacac------gctcgagcgccaccccaaggcgtcggcctactggttc 271
Query: 667 agagacatgct 677
|| ||||||||
Sbjct: 270 agggacatgct 260
>gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08O07 3', mRNA sequence
Length = 806
Score = 341 bits (172), Expect = 4e-091
Identities = 456/551 (82%), Gaps = 6/551 (1%)
Strand = Plus / Minus
Query: 127 cccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattgggatc 186
|||||||| ||||| || ||||||| |||||||||||||| || || || ||||| |||
Sbjct: 803 cccaagttcactcctgaccaagctagattggtcaagggctcggctgactatattggcatc 744
Query: 187 aatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagcctactagc 246
|| |||||||| ||||||||| ||||||||||| || || | ||||||| || || ||
Sbjct: 743 aaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccgacgagt 684
Query: 247 tactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcggacca 306
|||||||| |||||||||||| |||||||| | ||||||||||| || ||||||
Sbjct: 683 tactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggacca 624
Query: 307 caggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactat 366
||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 623 caggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaactac 564
Query: 367 ctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatcagcca 426
| ||||| ||||| || ||||| ||||| ||||||| || |||||||||||||| ||
Sbjct: 563 atcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaacct 504
Query: 427 ggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctacaaaggc 486
| ||| | | || | ||||||| ||| ||||||||| ||||| || ||||||| ||
Sbjct: 503 gcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagc 444
Query: 487 tacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgct 546
|||||| | |||||| ||| |||||||| || |||||| | |||||||||||||||||
Sbjct: 443 tacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcc 384
Query: 547 tggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtc 606
||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 383 tggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtc 324
Query: 607 tacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactggttc 666
||||||||||||| ||| |||||| || |||||||||||||| ||||||||||||
Sbjct: 323 tacgtcgacttcaacac------gctcgagcgccaccccaaggcgtcggcctactggttc 270
Query: 667 agagacatgct 677
|| ||||||||
Sbjct: 269 agggacatgct 259
>gb|CB668192.1|CB668192 OSJNEd15O19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15O19 3', mRNA sequence
Length = 877
Score = 311 bits (157), Expect = 3e-082
Identities = 432/524 (82%), Gaps = 6/524 (1%)
Strand = Plus / Minus
Query: 154 ttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagctacgtgaag 213
|||||||||||||| || || || ||||| ||||| |||||||| ||||||||| |||||
Sbjct: 874 ttggtcaagggctcggctgactatattggcatcaaccaatacacagctagctacatgaag 815
Query: 214 ggccagaaactgctccagcagaagcctactagctactcagctgattggcaggttcaatat 273
|||||| || || | ||||||| || || || |||||||| |||||||||||| |||
Sbjct: 814 ggccagcaattgatgcagcagacaccgacgagttactcagccgattggcaggttacctat 755
Query: 274 gttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggctttacatc 333
||||| | ||||||||||| || ||||||||||| ||||| || ||||||||||||
Sbjct: 754 gtttttgcgaaaaacggcaaaccaattggaccacaggcaaattctaattggctttacatc 695
Query: 334 gtcccagaagggatgtacggttgtgtgaactatctgaagcacaagtatggaaatccaaca 393
|| ||| ||||||||||| ||||||||||| | ||||| ||||| || ||||| |||
Sbjct: 694 gtgccatgggggatgtacggatgtgtgaactacatcaagcagaagtacgggaatccgaca 635
Query: 394 gttttcataaccgagaacggaatggatcagccaggaaacttgactcgtggccagtacctg 453
|| ||||||| || |||||||||||||| || | ||| | | || | ||||||| ||
Sbjct: 634 gtcgtcataactgaaaacggaatggatcaacctgcgaacctcagccgcgaccagtacttg 575
Query: 454 cacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgaggaaagccatc 513
| ||||||||| ||||| || || |||| |||||||| | |||||| ||| ||||||
Sbjct: 574 cgcgacaccacgagggttcatttttacaggagctacctcacccagctgaagaaggccatc 515
Query: 514 gatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaacttcgagtgg 573
|| || |||||| | ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 514 gacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaacttcgagtgg 455
Query: 574 cagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctc 633
| |||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||
Sbjct: 454 ctgtcaggttacacgtccaagtttggtatcgtttacgtcgacttcaacac------gctc 401
Query: 634 gaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 400 gagcgccaccccaaggcgtcggcctactggttcagggacatgct 357
>gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05K05 3', mRNA sequence
Length = 837
Score = 307 bits (155), Expect = 5e-081
Identities = 409/494 (82%), Gaps = 6/494 (1%)
Strand = Plus / Minus
Query: 184 atcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagcctact 243
||||| |||||||| ||||||||| ||||||||||| || || | ||||||| || ||
Sbjct: 834 atcaaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccgacg 775
Query: 244 agctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcgga 303
|| |||||||| |||||||||||| |||||||| | ||||||||||| || |||
Sbjct: 774 agttactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattgga 715
Query: 304 ccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaac 363
|||||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||||
Sbjct: 714 ccacaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaac 655
Query: 364 tatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatcag 423
|| | ||||| ||||| || ||||| ||||| ||||||| || ||||||||||||||
Sbjct: 654 tacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaa 595
Query: 424 ccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctacaaa 483
|| | ||| | | || | ||||||| ||| ||||||||| ||||| || |||||||
Sbjct: 594 cctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctacagg 535
Query: 484 ggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttc 543
|||||||| | |||||| ||| |||||||| || |||||| | |||||||||||||||
Sbjct: 534 agctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttc 475
Query: 544 gcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatc 603
|| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 474 gcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatc 415
Query: 604 gtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactgg 663
|||||||||||||||| ||| |||||| || |||||||||||||| |||||||||
Sbjct: 414 gtctacgtcgacttcaacac------gctcgagcgccaccccaaggcgtcggcctactgg 361
Query: 664 ttcagagacatgct 677
||||| ||||||||
Sbjct: 360 ttcagggacatgct 347
>gb|CB648778.1|CB648778 OSJNEb12F12.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb12F12 3', mRNA sequence
Length = 686
Score = 303 bits (153), Expect = 8e-080
Identities = 493/604 (81%), Gaps = 8/604 (1%)
Strand = Plus / Minus
Query: 75 ataaatggacattatccacagataatgcaagatattgtgaaagagaggctgccccaagtt 134
|||||||||||||| || ||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 662 ataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgccc-aagtt 604
Query: 135 tactccggagcaagctaagttggtcaagggctcagcggattacattgggatcaatcaata 194
||||| || ||||||| |||||||||||||| || || || ||||| ||||| |||||
Sbjct: 603 cactcctgaacaagctagattggtcaagggctcggctgactatattggcatcaaccaata 544
Query: 195 caccgctagctacgtgaagggccagaaactgctccagcagaagcctactagctactcagc 254
||| ||||||||| ||||||||||| || || | ||||||| || || || || |||||
Sbjct: 543 cacagctagctacatgaagggccagcaattgatgcagcagacaccgacgagttattcagc 484
Query: 255 tgattggcaggttcaatatgttttagaacggaacggcaaaccgatcggaccacaggcgaa 314
|||||||||||| |||||||| | ||||||||||| || ||||||||||| ||
Sbjct: 483 cgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggaccacaggcaaa 424
Query: 315 ttcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatctgaagca 374
|| || ||||||| |||||| ||| ||||||||||| |||||||| || | |||||
Sbjct: 423 ttttaattggcttttcatcgtgccatgggggatgtacggatgtgtgaattacatcaagca 364
Query: 375 caagtatggaaatccaacagttttcataaccgagaacggaatggatcagccaggaaactt 434
||||| || ||||| ||||| ||||||| || |||||||||||||| | | ||| |
Sbjct: 363 gaagtacgggaatccgacagtcgtcataactgaaaacggaatggatcaccttgtgaacct 304
Query: 435 gactcgtggccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgc 494
| || | ||||||| ||| ||||||||| ||||| || ||||||| |||||||| |
Sbjct: 303 cagccgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcac 244
Query: 495 tgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcg-cttggtctc 553
|||||| ||| |||||||| || |||||| | |||||||||||||||| | |||||||
Sbjct: 243 ccagctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgacgtggtctc 184
Query: 554 tcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcg 613
|||| |||||||||||||||| |||||||||||||||||||||||| || || |||||||
Sbjct: 183 tcctggacaacttcgagtggctgtcaggttacacgtccaagtttggtatggtgtacgtcg 124
Query: 614 acttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagaca 673
|||||| ||| |||||| || |||||||||||||| |||| |||||||| | ||
Sbjct: 123 acttcaacac------gctcgagcgccaccccaaggcgtcggcctcatggttcagggcca 70
Query: 674 tgct 677
||||
Sbjct: 69 tgct 66
>gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08C01 3', mRNA sequence
Length = 775
Score = 264 bits (133), Expect = 7e-068
Identities = 327/392 (83%), Gaps = 6/392 (1%)
Strand = Plus / Minus
Query: 286 aacggcaaaccgatcggaccacaggcgaattcaaagtggctttacatcgtcccagaaggg 345
||||||||||| || ||||| ||||| |||| || |||||||||||||| ||| |||
Sbjct: 757 aacggcaaaccaattggaccgcaggcaaattttaattggctttacatcgtgccatggggg 698
Query: 346 atgtacggttgtgtgaactatctgaagcacaagtatggaaatccaacagttttcataacc 405
|||||||| ||||||||||| | ||||| ||||| || ||||| ||||| |||||||
Sbjct: 697 atgtacggatgtgtgaactacatcaagcagaagtacgggaatccgacagtcgtcataact 638
Query: 406 gagaacggaatggatcagccaggaaacttgactcgtggccagtacctgcacgacaccaca 465
|| |||||||||||||| || | ||| | | || | ||||||| ||| |||||||||
Sbjct: 637 gaaaacggaatggatcaacctgcgaacctcagccgcgaccagtacttgcgcgacaccacg 578
Query: 466 agggtgcaattctacaaaggctacctcgctgagctgaggaaagccatcgatgacggcgcc 525
||||| || ||||||| |||||||| | |||||| ||| |||||||| || ||||||
Sbjct: 577 agggttcatttctacaggagctacctcacccagctgaagaaggccatcgacgagggcgcc 518
Query: 526 gacgtggctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttac 585
| ||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct: 517 aatgtggctggctacttcgcctggtctctcctggacaacttcgagtggctgtcaggttac 458
Query: 586 acgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacacccc 645
|||||||||||||| ||||||||||||||||||| ||| |||||| || ||||||
Sbjct: 457 acgtccaagtttggtatcgtctacgtcgacttcaacac------gctcgagcgccacccc 404
Query: 646 aaggcgtcagcctactggttcagagacatgct 677
|||||||| |||||||||||||| ||||||||
Sbjct: 403 aaggcgtcggcctactggttcagggacatgct 372
>gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1350, mRNA sequence
Length = 709
Score = 260 bits (131), Expect = 1e-066
Identities = 317/378 (83%), Gaps = 7/378 (1%)
Strand = Plus / Plus
Query: 301 ggaccacaggcgaattc-aaagtggctttacatcgtcccagaagggatgtacggttgtgt 359
||||||||||| ||||| ||| |||||||||||||| ||| ||||||||||| |||||
Sbjct: 63 ggaccacaggcaaattctaaattggctttacatcgtgccatgggggatgtacggatgtgt 122
Query: 360 gaactatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatgga 419
|||||| | ||||| ||||| || ||||| ||||| ||||||| || |||||||||||
Sbjct: 123 gaactacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatgga 182
Query: 420 tcagccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattcta 479
||| || | ||| | | || | ||||||| ||| ||||||||| ||||| || |||||
Sbjct: 183 tcaacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttcta 242
Query: 480 caaaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggcta 539
|| |||||||| | |||||| ||| |||||||| || |||||| | |||||||||||
Sbjct: 243 caggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggcta 302
Query: 540 cttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttgg 599
|||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 303 cttcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttgg 362
Query: 600 aatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagccta 659
||||||||||||||||||| ||| |||||| || |||||||||||||| |||||
Sbjct: 363 tatcgtctacgtcgacttcaacac------gctcgagcgccaccccaaggcgtcggccta 416
Query: 660 ctggttcagagacatgct 677
||||||||| ||||||||
Sbjct: 417 ctggttcagggacatgct 434
>gb|C25358.1|C25358 C25358 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S6040_1A, mRNA sequence
Length = 383
Score = 228 bits (115), Expect = 4e-057
Identities = 303/368 (82%), Gaps = 6/368 (1%)
Strand = Plus / Plus
Query: 301 ggaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtg 360
||||||||||| ||||| || |||||||||||||| ||| ||||||||||| ||||||
Sbjct: 8 ggaccacaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtg 67
Query: 361 aactatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggat 420
||||| | ||||| ||||| || ||||| ||||| ||||||| || |||||||||| |
Sbjct: 68 aactacatcaagcagaagtacgggaatccgacagtcgtcataactgaaaacggaatggnt 127
Query: 421 cagccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctac 480
|| || | ||| | | || | ||||||| ||| ||||||||| ||||| || ||||||
Sbjct: 128 caacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctac 187
Query: 481 aaaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctac 540
| |||||||| | |||||| ||| |||||||| || |||||| | ||||||||||||
Sbjct: 188 aggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctac 247
Query: 541 ttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttgga 600
|||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 248 ttcgnctggtctctcctggacancttcgagtggctgtcaggttacacgtccaagtttggt 307
Query: 601 atcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctac 660
||||||||||||||||||| ||| | |||| || |||||||||||||| | ||||
Sbjct: 308 atcgtctacgtcgacttcancac------gttcgagcgncaccccaaggcgtcggnctac 361
Query: 661 tggttcag 668
||||||||
Sbjct: 362 tggttcag 369
>gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3421, mRNA sequence
Length = 716
Score = 218 bits (110), Expect = 4e-054
Identities = 311/377 (82%), Gaps = 8/377 (2%)
Strand = Plus / Plus
Query: 301 ggaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtg 360
||||||||||| ||||| || || ||||||||||||| | || | ||||| ||||||
Sbjct: 70 ggaccacaggc-aattctaattgnctttacatcgtccnatggggattntacggatgtgtg 128
Query: 361 aactatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggat 420
| ||| | ||||| ||||| || ||||| ||||| ||||||| || ||||||||||||
Sbjct: 129 anctacatcaagcagaagtacgggaatccgacagtcgtcataactga-aacggaatggat 187
Query: 421 cagccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctac 480
|| || | ||| | | || | ||||||| ||| ||||||||| ||||| || ||||||
Sbjct: 188 caacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggttcatttctac 247
Query: 481 aaaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctac 540
| |||||||| | |||||| ||| |||||||| || |||||| | ||||||||||||
Sbjct: 248 aggagctacctcacccagctgaagaaggccatcgacgagggcgccaatgtggctggctac 307
Query: 541 ttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttgga 600
||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 308 ttcgcctggtctctcctggacaacttcgagtggctgtcaggttacacgtccaagtttggt 367
Query: 601 atcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctac 660
||||||||||||||||||| ||| |||||| || |||||||||||||| ||||||
Sbjct: 368 atcgtctacgtcgacttcaacac------gctcgagcgccaccccaaggcgtcggcctac 421
Query: 661 tggttcagagacatgct 677
|||||||| ||||||||
Sbjct: 422 tggttcagggacatgct 438
>gb|CF304361.1|CF304361 ABF1--04-M08.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--04-M08, mRNA sequence
Length = 587
Score = 214 bits (108), Expect = 6e-053
Identities = 266/316 (84%), Gaps = 2/316 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 266 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 325
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| | ||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 326 cttgatccattga-taaatggacattacccgcagataatgcaagatcttgtgaaagatag 384
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
||||||| ||||| ||||| || ||||||| |||||||||||||| || || || ||||
Sbjct: 385 gctgccc-aagttcactcctgaacaagctagattggtcaagggctcggctgactatattg 443
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
| ||||| |||||||| ||||||||| ||||||||||| || || | ||||||| || |
Sbjct: 444 gcatcaaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccga 503
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| || |||||||| |||||||||||| |||||||| | ||||||||||| || |
Sbjct: 504 cgagttactcagccgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattg 563
Query: 302 gaccacaggcgaattc 317
|||||||||| |||||
Sbjct: 564 gaccacaggcaaattc 579
>gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S3977_2Z, mRNA sequence
Length = 493
Score = 212 bits (107), Expect = 2e-052
Identities = 202/234 (86%), Gaps = 6/234 (2%)
Strand = Plus / Plus
Query: 444 ccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgag 503
||||||| ||| ||||||||| ||||| || ||||||| |||||||| | ||||||
Sbjct: 86 ccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctgaa 145
Query: 504 gaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaa 563
||| |||||||| || |||||| | ||||||||||||||||| ||||||||||| |||||
Sbjct: 146 gaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaa 205
Query: 564 cttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcac 623
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 206 cttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac 265
Query: 624 gcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 266 ------gctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 313
>gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11496, mRNA sequence
Length = 705
Score = 212 bits (107), Expect = 2e-052
Identities = 202/234 (86%), Gaps = 6/234 (2%)
Strand = Plus / Plus
Query: 444 ccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgag 503
||||||| ||| ||||||||| ||||| || ||||||| |||||||| | ||||||
Sbjct: 99 ccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctgaa 158
Query: 504 gaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaa 563
||| |||||||| || |||||| | ||||||||||||||||| ||||||||||| |||||
Sbjct: 159 gaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaa 218
Query: 564 cttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcac 623
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 219 cttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac 278
Query: 624 gcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 279 ------gctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 326
>gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030043000_PLATE_A11_81_084.ab1 similar to
beta-glucosidase (EC 3.2.1.21), chloroplast - rice, mRNA
sequence
Length = 600
Score = 212 bits (107), Expect = 2e-052
Identities = 202/234 (86%), Gaps = 6/234 (2%)
Strand = Plus / Plus
Query: 444 ccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgag 503
||||||| ||| ||||||||| ||||| || ||||||| |||||||| | ||||||
Sbjct: 70 ccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctgaa 129
Query: 504 gaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaa 563
||| |||||||| || |||||| | ||||||||||||||||| ||||||||||| |||||
Sbjct: 130 gaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaa 189
Query: 564 cttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcac 623
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 190 cttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac 249
Query: 624 gcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 250 ------gctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 297
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
sequence
Length = 133889
Score = 212 bits (107), Expect = 2e-052
Identities = 202/234 (86%), Gaps = 6/234 (2%)
Strand = Plus / Plus
Query: 444 ccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgag 503
||||||| ||| ||||||||| ||||| || ||||||| |||||||| | ||||||
Sbjct: 79066 ccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctgaa 79125
Query: 504 gaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaa 563
||| |||||||| || |||||| | ||||||||||||||||| ||||||||||| |||||
Sbjct: 79126 gaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaa 79185
Query: 564 cttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcac 623
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 79186 cttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac 79245
Query: 624 gcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 79246 ------gctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 79293
Score = 153 bits (77), Expect = 2e-034
Identities = 165/193 (85%), Gaps = 1/193 (0%)
Strand = Plus / Plus
Query: 75 ataaatggacattatccacagataatgcaagatattgtgaaagagaggctgccccaagtt 134
|||||||||||||| || ||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 78361 ataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgccc-aagtt 78419
Query: 135 tactccggagcaagctaagttggtcaagggctcagcggattacattgggatcaatcaata 194
||||| || ||||||| |||||||||||||| || || || ||||| ||||| |||||
Sbjct: 78420 cactcctgaacaagctagattggtcaagggctcggctgactatattggcatcaaccaata 78479
Query: 195 caccgctagctacgtgaagggccagaaactgctccagcagaagcctactagctactcagc 254
||| ||||||||| ||||||||||| || || | ||||||| || || || ||||||||
Sbjct: 78480 cacagctagctacatgaagggccagcaattgatgcagcagacaccgacgagttactcagc 78539
Query: 255 tgattggcaggtt 267
||||||||||||
Sbjct: 78540 cgattggcaggtt 78552
Score = 77.8 bits (39), Expect = 9e-012
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 486 ctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgc 545
||||||| |||| |||| |||||||||||| || || || | |||| || ||||||||
Sbjct: 70542 ctacctcactgaactgaagaaagccatcgacgatggtgcaaatgtggttgcgtacttcgc 70601
Query: 546 ttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtt 596
|||||||| ||||| ||||||||||||| |||||||||||| || |||||
Sbjct: 70602 atggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagtt 70652
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 78150 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggt 78207
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct: 69689 aactcaactgaagaccaagcagcagctcaaagagccagagacttccatgttggttggt 69746
Score = 63.9 bits (32), Expect = 1e-007
Identities = 89/108 (82%)
Strand = Plus / Plus
Query: 306 acaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaacta 365
|||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 78816 acaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaacta 78875
Query: 366 tctgaagcacaagtatggaaatccaacagttttcataaccgagaacgg 413
| ||||| ||||| || ||||| ||||| ||||||| || |||||
Sbjct: 78876 catcaagcagaagtacgggaatccgacagtcgtcataactgaaaacgg 78923
Score = 54.0 bits (27), Expect = 1e-004
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 145 caagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagc 204
||||||||| | ||||||||||| || ||||| |||||||||||||||| || |||| |
Sbjct: 69919 caagctaagctagtcaagggctccgcagattattttgggatcaatcaatatactgctaac 69978
Query: 205 tac 207
|||
Sbjct: 69979 tac 69981
Score = 42.1 bits (21), Expect = 0.48
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 74 aataaatggacattatccacagataatgcaagatattgtgaaaga 118
|||||||||||| |||||| | | |||| |||||||||||||||
Sbjct: 69849 aataaatggacaatatccaaaaaatatgcgagatattgtgaaaga 69893
>gb|AACV01007733.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007733, whole
genome shotgun sequence
Length = 4355
Score = 212 bits (107), Expect = 2e-052
Identities = 202/234 (86%), Gaps = 6/234 (2%)
Strand = Plus / Minus
Query: 444 ccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgag 503
||||||| ||| ||||||||| ||||| || ||||||| |||||||| | ||||||
Sbjct: 4108 ccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctgaa 4049
Query: 504 gaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaa 563
||| |||||||| || |||||| | ||||||||||||||||| ||||||||||| |||||
Sbjct: 4048 gaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaa 3989
Query: 564 cttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcac 623
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 3988 cttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac 3929
Query: 624 gcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 3928 ------gctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 3881
Score = 65.9 bits (33), Expect = 3e-008
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 313 aattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatctgaag 372
||||| ||||||||||||||||| ||| ||||||||||| ||||||||||| | |||
Sbjct: 4351 aattctaagtggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaag 4292
Query: 373 cacaagtatggaaatccaacagttttcataaccgagaacgg 413
|| ||||| || ||||| ||||| ||||||| || |||||
Sbjct: 4291 cagaagtacgggaatccgacagtcgtcataactgaaaacgg 4251
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 212 bits (107), Expect = 2e-052
Identities = 202/234 (86%), Gaps = 6/234 (2%)
Strand = Plus / Minus
Query: 444 ccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgag 503
||||||| ||| ||||||||| ||||| || ||||||| |||||||| | ||||||
Sbjct: 1251225 ccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctgaa 1251166
Query: 504 gaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaa 563
||| |||||||| || |||||| | ||||||||||||||||| ||||||||||| |||||
Sbjct: 1251165 gaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaa 1251106
Query: 564 cttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcac 623
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 1251105 cttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac 1251046
Query: 624 gcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 1251045 ------gctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 1250998
Score = 153 bits (77), Expect = 2e-034
Identities = 165/193 (85%), Gaps = 1/193 (0%)
Strand = Plus / Minus
Query: 75 ataaatggacattatccacagataatgcaagatattgtgaaagagaggctgccccaagtt 134
|||||||||||||| || ||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 1251930 ataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgccc-aagtt 1251872
Query: 135 tactccggagcaagctaagttggtcaagggctcagcggattacattgggatcaatcaata 194
||||| || ||||||| |||||||||||||| || || || ||||| ||||| |||||
Sbjct: 1251871 cactcctgaacaagctagattggtcaagggctcggctgactatattggcatcaaccaata 1251812
Query: 195 caccgctagctacgtgaagggccagaaactgctccagcagaagcctactagctactcagc 254
||| ||||||||| ||||||||||| || || | ||||||| || || || ||||||||
Sbjct: 1251811 cacagctagctacatgaagggccagcaattgatgcagcagacaccgacgagttactcagc 1251752
Query: 255 tgattggcaggtt 267
||||||||||||
Sbjct: 1251751 cgattggcaggtt 1251739
Score = 77.8 bits (39), Expect = 9e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 486 ctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgc 545
||||||| |||| |||| |||||||||||| || || || | |||| || ||||||||
Sbjct: 1259749 ctacctcactgaactgaagaaagccatcgacgatggtgcaaatgtggttgcgtacttcgc 1259690
Query: 546 ttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtt 596
|||||||| ||||| ||||||||||||| |||||||||||| || |||||
Sbjct: 1259689 atggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagtt 1259639
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct: 1260602 aactcaactgaagaccaagcagcagctcaaagagccagagacttccatgttggttggt 1260545
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 1252141 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggt 1252084
Score = 63.9 bits (32), Expect = 1e-007
Identities = 89/108 (82%)
Strand = Plus / Minus
Query: 306 acaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaacta 365
|||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 1251475 acaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaacta 1251416
Query: 366 tctgaagcacaagtatggaaatccaacagttttcataaccgagaacgg 413
| ||||| ||||| || ||||| ||||| ||||||| || |||||
Sbjct: 1251415 catcaagcagaagtacgggaatccgacagtcgtcataactgaaaacgg 1251368
Score = 54.0 bits (27), Expect = 1e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 145 caagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagc 204
||||||||| | ||||||||||| || ||||| |||||||||||||||| || |||| |
Sbjct: 1260372 caagctaagctagtcaagggctccgcagattattttgggatcaatcaatatactgctaac 1260313
Query: 205 tac 207
|||
Sbjct: 1260312 tac 1260310
Score = 42.1 bits (21), Expect = 0.48
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 74 aataaatggacattatccacagataatgcaagatattgtgaaaga 118
|||||||||||| |||||| | | |||| |||||||||||||||
Sbjct: 1260442 aataaatggacaatatccaaaaaatatgcgagatattgtgaaaga 1260398
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 212 bits (107), Expect = 2e-052
Identities = 202/234 (86%), Gaps = 6/234 (2%)
Strand = Plus / Minus
Query: 444 ccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgag 503
||||||| ||| ||||||||| ||||| || ||||||| |||||||| | ||||||
Sbjct: 1728332 ccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctgaa 1728273
Query: 504 gaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaa 563
||| |||||||| || |||||| | ||||||||||||||||| ||||||||||| |||||
Sbjct: 1728272 gaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaa 1728213
Query: 564 cttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcac 623
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 1728212 cttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac 1728153
Query: 624 gcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 1728152 ------gctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 1728105
Score = 137 bits (69), Expect = 1e-029
Identities = 127/145 (87%), Gaps = 1/145 (0%)
Strand = Plus / Minus
Query: 75 ataaatggacattatccacagataatgcaagatattgtgaaagagaggctgccccaagtt 134
|||||||||||||| || ||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 1728856 ataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgccc-aagtt 1728798
Query: 135 tactccggagcaagctaagttggtcaagggctcagcggattacattgggatcaatcaata 194
||||| || ||||||| |||||||||||||| || || || ||||| ||||| |||||
Sbjct: 1728797 cactcctgaacaagctagattggtcaagggctcggctgactatattggcatcaaccaata 1728738
Query: 195 caccgctagctacgtgaagggccag 219
||| ||||||||| |||||||||||
Sbjct: 1728737 cacagctagctacatgaagggccag 1728713
Score = 77.8 bits (39), Expect = 9e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 486 ctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgc 545
||||||| |||| |||| |||||||||||| || || || | |||| || ||||||||
Sbjct: 1736675 ctacctcactgaactgaagaaagccatcgacgatggtgcaaatgtggttgcgtacttcgc 1736616
Query: 546 ttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtt 596
|||||||| ||||| ||||||||||||| |||||||||||| || |||||
Sbjct: 1736615 atggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagtt 1736565
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct: 1737528 aactcaactgaagaccaagcagcagctcaaagagccagagacttccatgttggttggt 1737471
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 1729067 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggt 1729010
Score = 65.9 bits (33), Expect = 3e-008
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 313 aattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatctgaag 372
||||| ||||||||||||||||| ||| ||||||||||| ||||||||||| | |||
Sbjct: 1728575 aattctaagtggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaag 1728516
Query: 373 cacaagtatggaaatccaacagttttcataaccgagaacgg 413
|| ||||| || ||||| ||||| ||||||| || |||||
Sbjct: 1728515 cagaagtacgggaatccgacagtcgtcataactgaaaacgg 1728475
Score = 54.0 bits (27), Expect = 1e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 145 caagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagc 204
||||||||| | ||||||||||| || ||||| |||||||||||||||| || |||| |
Sbjct: 1737298 caagctaagctagtcaagggctccgcagattattttgggatcaatcaatatactgctaac 1737239
Query: 205 tac 207
|||
Sbjct: 1737238 tac 1737236
Score = 42.1 bits (21), Expect = 0.48
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 74 aataaatggacattatccacagataatgcaagatattgtgaaaga 118
|||||||||||| |||||| | | |||| |||||||||||||||
Sbjct: 1737368 aataaatggacaatatccaaaaaatatgcgagatattgtgaaaga 1737324
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 212 bits (107), Expect = 2e-052
Identities = 202/234 (86%), Gaps = 6/234 (2%)
Strand = Plus / Minus
Query: 444 ccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgag 503
||||||| ||| ||||||||| ||||| || ||||||| |||||||| | ||||||
Sbjct: 28994495 ccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctgaa 28994436
Query: 504 gaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaa 563
||| |||||||| || |||||| | ||||||||||||||||| ||||||||||| |||||
Sbjct: 28994435 gaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaa 28994376
Query: 564 cttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcac 623
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 28994375 cttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac 28994316
Query: 624 gcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 28994315 ------gctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 28994268
Score = 137 bits (69), Expect = 1e-029
Identities = 127/145 (87%), Gaps = 1/145 (0%)
Strand = Plus / Minus
Query: 75 ataaatggacattatccacagataatgcaagatattgtgaaagagaggctgccccaagtt 134
|||||||||||||| || ||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 28995019 ataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgccc-aagtt 28994961
Query: 135 tactccggagcaagctaagttggtcaagggctcagcggattacattgggatcaatcaata 194
||||| || ||||||| |||||||||||||| || || || ||||| ||||| |||||
Sbjct: 28994960 cactcctgaacaagctagattggtcaagggctcggctgactatattggcatcaaccaata 28994901
Query: 195 caccgctagctacgtgaagggccag 219
||| ||||||||| |||||||||||
Sbjct: 28994900 cacagctagctacatgaagggccag 28994876
Score = 77.8 bits (39), Expect = 9e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 486 ctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgc 545
||||||| |||| |||| |||||||||||| || || || | |||| || ||||||||
Sbjct: 29002838 ctacctcactgaactgaagaaagccatcgacgatggtgcaaatgtggttgcgtacttcgc 29002779
Query: 546 ttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtt 596
|||||||| ||||| ||||||||||||| |||||||||||| || |||||
Sbjct: 29002778 atggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagtt 29002728
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct: 29003691 aactcaactgaagaccaagcagcagctcaaagagccagagacttccatgttggttggt 29003634
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 28995230 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggt 28995173
Score = 65.9 bits (33), Expect = 3e-008
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 313 aattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatctgaag 372
||||| ||||||||||||||||| ||| ||||||||||| ||||||||||| | |||
Sbjct: 28994738 aattctaagtggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaag 28994679
Query: 373 cacaagtatggaaatccaacagttttcataaccgagaacgg 413
|| ||||| || ||||| ||||| ||||||| || |||||
Sbjct: 28994678 cagaagtacgggaatccgacagtcgtcataactgaaaacgg 28994638
Score = 54.0 bits (27), Expect = 1e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 145 caagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagc 204
||||||||| | ||||||||||| || ||||| |||||||||||||||| || |||| |
Sbjct: 29003461 caagctaagctagtcaagggctccgcagattattttgggatcaatcaatatactgctaac 29003402
Query: 205 tac 207
|||
Sbjct: 29003401 tac 29003399
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 538 tacttcgcttggtctctcctcgacaacttcgagtgg 573
||||| |||||||| || ||||||||||||||||||
Sbjct: 12015181 tactttgcttggtcactgctcgacaacttcgagtgg 12015146
Score = 42.1 bits (21), Expect = 0.48
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 74 aataaatggacattatccacagataatgcaagatattgtgaaaga 118
|||||||||||| |||||| | | |||| |||||||||||||||
Sbjct: 29003531 aataaatggacaatatccaaaaaatatgcgagatattgtgaaaga 29003487
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 212 bits (107), Expect = 2e-052
Identities = 202/234 (86%), Gaps = 6/234 (2%)
Strand = Plus / Minus
Query: 444 ccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgag 503
||||||| ||| ||||||||| ||||| || ||||||| |||||||| | ||||||
Sbjct: 28037284 ccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctgaa 28037225
Query: 504 gaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaa 563
||| |||||||| || |||||| | ||||||||||||||||| ||||||||||| |||||
Sbjct: 28037224 gaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaa 28037165
Query: 564 cttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcac 623
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 28037164 cttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac 28037105
Query: 624 gcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 28037104 ------gctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 28037057
Score = 153 bits (77), Expect = 2e-034
Identities = 165/193 (85%), Gaps = 1/193 (0%)
Strand = Plus / Minus
Query: 75 ataaatggacattatccacagataatgcaagatattgtgaaagagaggctgccccaagtt 134
|||||||||||||| || ||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 28037989 ataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgccc-aagtt 28037931
Query: 135 tactccggagcaagctaagttggtcaagggctcagcggattacattgggatcaatcaata 194
||||| || ||||||| |||||||||||||| || || || ||||| ||||| |||||
Sbjct: 28037930 cactcctgaacaagctagattggtcaagggctcggctgactatattggcatcaaccaata 28037871
Query: 195 caccgctagctacgtgaagggccagaaactgctccagcagaagcctactagctactcagc 254
||| ||||||||| ||||||||||| || || | ||||||| || || || ||||||||
Sbjct: 28037870 cacagctagctacatgaagggccagcaattgatgcagcagacaccgacgagttactcagc 28037811
Query: 255 tgattggcaggtt 267
||||||||||||
Sbjct: 28037810 cgattggcaggtt 28037798
Score = 77.8 bits (39), Expect = 9e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 486 ctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgc 545
||||||| |||| |||| |||||||||||| || || || | |||| || ||||||||
Sbjct: 28045808 ctacctcactgaactgaagaaagccatcgacgatggtgcaaatgtggttgcgtacttcgc 28045749
Query: 546 ttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtt 596
|||||||| ||||| ||||||||||||| |||||||||||| || |||||
Sbjct: 28045748 atggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagtt 28045698
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct: 28046661 aactcaactgaagaccaagcagcagctcaaagagccagagacttccatgttggttggt 28046604
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 28038200 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggt 28038143
Score = 63.9 bits (32), Expect = 1e-007
Identities = 89/108 (82%)
Strand = Plus / Minus
Query: 306 acaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaacta 365
|||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 28037534 acaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaacta 28037475
Query: 366 tctgaagcacaagtatggaaatccaacagttttcataaccgagaacgg 413
| ||||| ||||| || ||||| ||||| ||||||| || |||||
Sbjct: 28037474 catcaagcagaagtacgggaatccgacagtcgtcataactgaaaacgg 28037427
Score = 54.0 bits (27), Expect = 1e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 145 caagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagc 204
||||||||| | ||||||||||| || ||||| |||||||||||||||| || |||| |
Sbjct: 28046431 caagctaagctagtcaagggctccgcagattattttgggatcaatcaatatactgctaac 28046372
Query: 205 tac 207
|||
Sbjct: 28046371 tac 28046369
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 538 tacttcgcttggtctctcctcgacaacttcgagtgg 573
||||| |||||||| || ||||||||||||||||||
Sbjct: 11690475 tactttgcttggtcactgctcgacaacttcgagtgg 11690440
Score = 42.1 bits (21), Expect = 0.48
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 74 aataaatggacattatccacagataatgcaagatattgtgaaaga 118
|||||||||||| |||||| | | |||| |||||||||||||||
Sbjct: 28046501 aataaatggacaatatccaaaaaatatgcgagatattgtgaaaga 28046457
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 212 bits (107), Expect = 2e-052
Identities = 202/234 (86%), Gaps = 6/234 (2%)
Strand = Plus / Minus
Query: 444 ccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgag 503
||||||| ||| ||||||||| ||||| || ||||||| |||||||| | ||||||
Sbjct: 27945960 ccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctgaa 27945901
Query: 504 gaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaa 563
||| |||||||| || |||||| | ||||||||||||||||| ||||||||||| |||||
Sbjct: 27945900 gaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaa 27945841
Query: 564 cttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcac 623
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 27945840 cttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac 27945781
Query: 624 gcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 27945780 ------gctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 27945733
Score = 153 bits (77), Expect = 2e-034
Identities = 165/193 (85%), Gaps = 1/193 (0%)
Strand = Plus / Minus
Query: 75 ataaatggacattatccacagataatgcaagatattgtgaaagagaggctgccccaagtt 134
|||||||||||||| || ||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 27946665 ataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgccc-aagtt 27946607
Query: 135 tactccggagcaagctaagttggtcaagggctcagcggattacattgggatcaatcaata 194
||||| || ||||||| |||||||||||||| || || || ||||| ||||| |||||
Sbjct: 27946606 cactcctgaacaagctagattggtcaagggctcggctgactatattggcatcaaccaata 27946547
Query: 195 caccgctagctacgtgaagggccagaaactgctccagcagaagcctactagctactcagc 254
||| ||||||||| ||||||||||| || || | ||||||| || || || ||||||||
Sbjct: 27946546 cacagctagctacatgaagggccagcaattgatgcagcagacaccgacgagttactcagc 27946487
Query: 255 tgattggcaggtt 267
||||||||||||
Sbjct: 27946486 cgattggcaggtt 27946474
Score = 77.8 bits (39), Expect = 9e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 486 ctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgc 545
||||||| |||| |||| |||||||||||| || || || | |||| || ||||||||
Sbjct: 27954484 ctacctcactgaactgaagaaagccatcgacgatggtgcaaatgtggttgcgtacttcgc 27954425
Query: 546 ttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtt 596
|||||||| ||||| ||||||||||||| |||||||||||| || |||||
Sbjct: 27954424 atggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagtt 27954374
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct: 27955337 aactcaactgaagaccaagcagcagctcaaagagccagagacttccatgttggttggt 27955280
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 27946876 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggt 27946819
Score = 63.9 bits (32), Expect = 1e-007
Identities = 89/108 (82%)
Strand = Plus / Minus
Query: 306 acaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaacta 365
|||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 27946210 acaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaacta 27946151
Query: 366 tctgaagcacaagtatggaaatccaacagttttcataaccgagaacgg 413
| ||||| ||||| || ||||| ||||| ||||||| || |||||
Sbjct: 27946150 catcaagcagaagtacgggaatccgacagtcgtcataactgaaaacgg 27946103
Score = 54.0 bits (27), Expect = 1e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 145 caagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagc 204
||||||||| | ||||||||||| || ||||| |||||||||||||||| || |||| |
Sbjct: 27955107 caagctaagctagtcaagggctccgcagattattttgggatcaatcaatatactgctaac 27955048
Query: 205 tac 207
|||
Sbjct: 27955047 tac 27955045
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 538 tacttcgcttggtctctcctcgacaacttcgagtgg 573
||||| |||||||| || ||||||||||||||||||
Sbjct: 11693712 tactttgcttggtcactgctcgacaacttcgagtgg 11693677
Score = 42.1 bits (21), Expect = 0.48
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 74 aataaatggacattatccacagataatgcaagatattgtgaaaga 118
|||||||||||| |||||| | | |||| |||||||||||||||
Sbjct: 27955177 aataaatggacaatatccaaaaaatatgcgagatattgtgaaaga 27955133
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
map R2847, complete sequence
Length = 100918
Score = 212 bits (107), Expect = 2e-052
Identities = 202/234 (86%), Gaps = 6/234 (2%)
Strand = Plus / Minus
Query: 444 ccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgag 503
||||||| ||| ||||||||| ||||| || ||||||| |||||||| | ||||||
Sbjct: 81688 ccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccagctgaa 81629
Query: 504 gaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaa 563
||| |||||||| || |||||| | ||||||||||||||||| ||||||||||| |||||
Sbjct: 81628 gaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcctggacaa 81569
Query: 564 cttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcac 623
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 81568 cttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgacttcaacac 81509
Query: 624 gcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 81508 ------gctcgagcgccaccccaaggcgtcggcctactggttcagggacatgct 81461
Score = 153 bits (77), Expect = 2e-034
Identities = 165/193 (85%), Gaps = 1/193 (0%)
Strand = Plus / Minus
Query: 75 ataaatggacattatccacagataatgcaagatattgtgaaagagaggctgccccaagtt 134
|||||||||||||| || ||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 82393 ataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgccc-aagtt 82335
Query: 135 tactccggagcaagctaagttggtcaagggctcagcggattacattgggatcaatcaata 194
||||| || ||||||| |||||||||||||| || || || ||||| ||||| |||||
Sbjct: 82334 cactcctgaacaagctagattggtcaagggctcggctgactatattggcatcaaccaata 82275
Query: 195 caccgctagctacgtgaagggccagaaactgctccagcagaagcctactagctactcagc 254
||| ||||||||| ||||||||||| || || | ||||||| || || || ||||||||
Sbjct: 82274 cacagctagctacatgaagggccagcaattgatgcagcagacaccgacgagttactcagc 82215
Query: 255 tgattggcaggtt 267
||||||||||||
Sbjct: 82214 cgattggcaggtt 82202
Score = 77.8 bits (39), Expect = 9e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 486 ctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgc 545
||||||| |||| |||| |||||||||||| || || || | |||| || ||||||||
Sbjct: 90212 ctacctcactgaactgaagaaagccatcgacgatggtgcaaatgtggttgcgtacttcgc 90153
Query: 546 ttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtt 596
|||||||| ||||| ||||||||||||| |||||||||||| || |||||
Sbjct: 90152 atggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagtt 90102
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct: 91065 aactcaactgaagaccaagcagcagctcaaagagccagagacttccatgttggttggt 91008
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 82604 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggt 82547
Score = 63.9 bits (32), Expect = 1e-007
Identities = 89/108 (82%)
Strand = Plus / Minus
Query: 306 acaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaacta 365
|||||| ||||| || |||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 81938 acaggcaaattctaattggctttacatcgtgccatgggggatgtacggatgtgtgaacta 81879
Query: 366 tctgaagcacaagtatggaaatccaacagttttcataaccgagaacgg 413
| ||||| ||||| || ||||| ||||| ||||||| || |||||
Sbjct: 81878 catcaagcagaagtacgggaatccgacagtcgtcataactgaaaacgg 81831
Score = 54.0 bits (27), Expect = 1e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 145 caagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagc 204
||||||||| | ||||||||||| || ||||| |||||||||||||||| || |||| |
Sbjct: 90835 caagctaagctagtcaagggctccgcagattattttgggatcaatcaatatactgctaac 90776
Query: 205 tac 207
|||
Sbjct: 90775 tac 90773
Score = 42.1 bits (21), Expect = 0.48
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 74 aataaatggacattatccacagataatgcaagatattgtgaaaga 118
|||||||||||| |||||| | | |||| |||||||||||||||
Sbjct: 90905 aataaatggacaatatccaaaaaatatgcgagatattgtgaaaga 90861
>gb|D24663.1|D24663 RICR2336A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2336_1A, mRNA sequence
Length = 379
Score = 200 bits (101), Expect = 9e-049
Identities = 276/333 (82%), Gaps = 2/333 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 48 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 107
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| | ||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 108 cttgatccattga-taaatggacattacccgcagataatgcaagatcttgtgaaagatag 166
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
||||||| ||||| ||| | || | |||| |||||||||||||| || || || ||||
Sbjct: 167 gctgccc-aagttcactnctgaacnngctagattggtcaagggctcggctgactatattg 225
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagccta 241
| ||||| |||||||| ||||||||| ||||||||||| || || | ||||||| || |
Sbjct: 226 gcatcaaccaatacacagctagctacatgaagggccagcaattgatgcagcagacaccga 285
Query: 242 ctagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcg 301
| || |||||||| |||||||||||| |||||||| ||||||||||| || |
Sbjct: 286 cgagttactcagccgattggcaggttacctatgtttttncgaaaaacggcaaaccaattg 345
Query: 302 gaccacaggcgaattcaaagtggctttacatcg 334
| |||||||| ||||| || |||||||||||||
Sbjct: 346 gcccacaggcaaattctaattggctttacatcg 378
>gb|CF312197.1|CF312197 ABF--07-M20.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--07-M20, mRNA sequence
Length = 453
Score = 200 bits (101), Expect = 9e-049
Identities = 288/348 (82%), Gaps = 2/348 (0%)
Strand = Plus / Plus
Query: 75 ataaatggacattatccacagataatgcaagatattgtgaaagagaggctgccccaagtt 134
|||||||||||||| || ||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 30 ataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgccc-aagtt 88
Query: 135 tactccggagcaagctaagttggtcaagggctcagcggattacattgggatcaatcaata 194
||||| || ||||||| |||||||||||||| || || || ||||| ||||| |||||
Sbjct: 89 cactcctgaacaagctagattggtcaagggctcggctgactatattggcatcaaccaata 148
Query: 195 caccgctagctacgtgaagggccagaaactgctccagcagaagcctactagctactcagc 254
||| ||||||||| ||||||||||| || || | ||||||| || || || ||||||||
Sbjct: 149 cacagctagctacatgaagggccagcaattgatgcagcagacaccgacgagttactcagc 208
Query: 255 tgattggcaggttcaatatgttttagaacggaacggcaaaccgatcggaccacaggcgaa 314
|||||||||||| |||||||| | ||||||||||| || ||||||||||| ||
Sbjct: 209 cgattggcaggttacctatgtttttgcgaaaaacggcaaaccaattggaccacaggcaaa 268
Query: 315 ttcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatctgaagca 374
||| || |||||||||||||| || | |||||||| | ||||||||||| | |||||
Sbjct: 269 ttctaattggctttacatcgtgcctg-gnggatgtaccgatgtgtgaactacatcaagca 327
Query: 375 caagtatggaaatccaacagttttcataaccgagaacggaatggatca 422
||||| || ||||| ||||| ||||||| || ||||||||||||||
Sbjct: 328 gaagtacgggaatccgacagtcgtcataactgaaaacggaatggatca 375
>gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S12223, mRNA sequence
Length = 372
Score = 194 bits (98), Expect = 5e-047
Identities = 160/181 (88%), Gaps = 6/181 (3%)
Strand = Plus / Plus
Query: 497 agctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcc 556
|||||| ||| |||||||| || |||||| | ||||||||||||||||| ||||||||||
Sbjct: 20 agctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcc 79
Query: 557 tcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgact 616
| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 80 tggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgact 139
Query: 617 tcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgc 676
||| ||| |||||| || |||||||||||||| |||||||||||||| |||||||
Sbjct: 140 tcaacac------gctcgagcgccaccccaaggcgtcggcctactggttcagggacatgc 193
Query: 677 t 677
|
Sbjct: 194 t 194
>gb|CF312911.1|CF312911 ABF--08-N15.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-N15, mRNA sequence
Length = 519
Score = 194 bits (98), Expect = 5e-047
Identities = 190/218 (87%), Gaps = 2/218 (0%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 271 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 330
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| | ||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 331 cttgatccattga-taaatggacattacccgcagataatgcaagatcttgtgaaagatag 389
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacattg 181
||||||| ||||| ||||| || ||||||| |||||||||||||| || || || ||||
Sbjct: 390 gctgccc-aagttcactcctgaacaagctagattggtcaagggctcggctgactatattg 448
Query: 182 ggatcaatcaatacaccgctagctacgtgaagggccag 219
| ||||| |||||||| ||||||||| |||||||||||
Sbjct: 449 gcatcaaccaatacacagctagctacatgaagggccag 486
>gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-H19,
mRNA sequence
Length = 423
Score = 194 bits (98), Expect = 5e-047
Identities = 160/181 (88%), Gaps = 6/181 (3%)
Strand = Plus / Plus
Query: 497 agctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcc 556
|||||| ||| |||||||| || |||||| | ||||||||||||||||| ||||||||||
Sbjct: 78 agctgaagaaggccatcgacgagggcgccaatgtggctggctacttcgcctggtctctcc 137
Query: 557 tcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgact 616
| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 138 tggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgact 197
Query: 617 tcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgc 676
||| ||| |||||| || |||||||||||||| |||||||||||||| |||||||
Sbjct: 198 tcaacac------gctcgagcgccaccccaaggcgtcggcctactggttcagggacatgc 251
Query: 677 t 677
|
Sbjct: 252 t 252
>gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31058_1Z, mRNA sequence
Length = 394
Score = 180 bits (91), Expect = 8e-043
Identities = 141/158 (89%), Gaps = 6/158 (3%)
Strand = Plus / Plus
Query: 520 ggcgccgacgtggctggctacttcgcttggtctctcctcgacaacttcgagtggcagtca 579
|||||| | ||||||||||||||||| ||||||||||| |||||||||||||||| ||||
Sbjct: 70 ggcgccaatgtggctggctacttcgcctggtctctcctggacaacttcgagtggctgtca 129
Query: 580 ggttacacgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacga 639
|||||||||||||||||||| ||||||||||||||||||| ||| |||||| ||
Sbjct: 130 ggttacacgtccaagtttggtatcgtctacgtcgacttcaacac------gctcgagcgc 183
Query: 640 caccccaaggcgtcagcctactggttcagagacatgct 677
|||||||||||||| |||||||||||||| ||||||||
Sbjct: 184 caccccaaggcgtcggcctactggttcagggacatgct 221
>gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31217_1Z, mRNA sequence
Length = 356
Score = 178 bits (90), Expect = 3e-042
Identities = 134/149 (89%), Gaps = 6/149 (4%)
Strand = Plus / Plus
Query: 529 gtggctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacg 588
||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 41 gtggctggctacttcgcctggtctctcctggacaacttcgagtggctgtcaggttacacg 100
Query: 589 tccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaag 648
||||||||||| ||||||||||||||||||| ||| |||||| || |||||||||
Sbjct: 101 tccaagtttggtatcgtctacgtcgacttcaacac------gctcgagcgccaccccaag 154
Query: 649 gcgtcagcctactggttcagagacatgct 677
||||| |||||||||||||| ||||||||
Sbjct: 155 gcgtcggcctactggttcagggacatgct 183
>gb|AU092227.1|AU092227 AU092227 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11453, mRNA sequence
Length = 623
Score = 178 bits (90), Expect = 3e-042
Identities = 158/181 (87%), Gaps = 5/181 (2%)
Strand = Plus / Plus
Query: 497 agctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcc 556
|||||| ||| |||||||| || | |||| | ||||||||||||||||| ||||||||||
Sbjct: 127 agctgaagaaggccatcgacgaggncgccaatgtggctggctacttcgcctggtctctcc 186
Query: 557 tcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgact 616
| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 187 tggacaacttcgagtggctgtcaggttacacgtccaagtttggtatcgtctacgtcgact 246
Query: 617 tcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgc 676
||| ||||| | ||| | |||||||||||||| |||||||||||||| |||||||
Sbjct: 247 tcaacacgctcgagcgc-----ccaccccaaggcgtcggcctactggttcagggacatgc 301
Query: 677 t 677
|
Sbjct: 302 t 302
>gb|AU066086.2|AU066086 AU066086 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2816_5A, mRNA sequence
Length = 345
Score = 172 bits (87), Expect = 2e-040
Identities = 133/149 (89%), Gaps = 6/149 (4%)
Strand = Plus / Plus
Query: 529 gtggctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacg 588
||||||||||||||||| ||||||||||| || ||||||||||||| |||||||||||||
Sbjct: 22 gtggctggctacttcgcctggtctctcctgganaacttcgagtggctgtcaggttacacg 81
Query: 589 tccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaag 648
||||||||||| ||||||||||||||||||| ||| |||||| || |||||||||
Sbjct: 82 tccaagtttggtatcgtctacgtcgacttcaacac------gctcgagcgccaccccaag 135
Query: 649 gcgtcagcctactggttcagagacatgct 677
||||| |||||||||||||| ||||||||
Sbjct: 136 gcgtcggcctactggttcagggacatgct 164
>gb|CB643858.1|CB643858 OSJNEb04M14.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04M14 3', mRNA sequence
Length = 410
Score = 159 bits (80), Expect = 3e-036
Identities = 275/340 (80%)
Strand = Plus / Minus
Query: 286 aacggcaaaccgatcggaccacaggcgaattcaaagtggctttacatcgtcccagaaggg 345
||||||||||| || || |||||||| |||| || |||||||||||||| ||| |||
Sbjct: 381 aacggcaaaccaattgggccacaggcaaattttaattggctttacatcgtgccatggggg 322
Query: 346 atgtacggttgtgtgaactatctgaagcacaagtatggaaatccaacagttttcataacc 405
|||||||| ||||||||||| | ||||| ||||| || ||||| ||||| ||||| |
Sbjct: 321 atgtacggatgtgtgaactacatcaagcagaagtacgggaatccgacagtcgtcatatct 262
Query: 406 gagaacggaatggatcagccaggaaacttgactcgtggccagtacctgcacgacaccaca 465
|| |||||||||||||| || | ||| | | || | ||||||| ||| |||||| |
Sbjct: 261 gaaaacggaatggatcaacctgcgaacctcagccgcgaccagtacttgcgggacacctcg 202
Query: 466 agggtgcaattctacaaaggctacctcgctgagctgaggaaagccatcgatgacggcgcc 525
||||| || || |||| |||||||| | |||||| ||| |||||||| || ||||||
Sbjct: 201 agggttcatttttacaggagctacctcccccagctgaagaaggccatcgacgagggcgcc 142
Query: 526 gacgtggctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttac 585
| ||||||||||||||||| |||| | |||| |||||||| ||||||| ||||||||||
Sbjct: 141 aatgtggctggctacttcgcctggtttttcctggacaactttgagtggctgtcaggttac 82
Query: 586 acgtccaagtttggaatcgtctacgtcgacttcagcacgc 625
|||||||||||||| ||||||| ||| || |||| |||||
Sbjct: 81 acgtccaagtttggtatcgtcttcgtagatttcaacacgc 42
>dbj|AG214794.1| Oryza sativa (japonica cultivar-group) DNA, clone:T16546T, 3'
flanking sequence of Tos17 insertion in rice strain
NE7008, genomic survey sequence
Length = 272
Score = 157 bits (79), Expect = 1e-035
Identities = 184/222 (82%), Gaps = 6/222 (2%)
Strand = Plus / Minus
Query: 456 cgacaccacaagggtgcaattctacaaaggctacctcgctgagctgaggaaagccatcga 515
||||||||| ||||| || || |||| |||||||| | |||||| || ||||| ||
Sbjct: 262 cgacaccacgagggttcatttntacaggagctacctcacccagctgaanaaggccatnga 203
Query: 516 tgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaacttcgagtggca 575
|| |||||| | |||||||| ||||| || |||||| |||| ||||||||||||||||
Sbjct: 202 cgagggcgccaatgtggctggntacttngcctggtctntcctggacaacttcgagtggct 143
Query: 576 gtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcga 635
|||||||||||||||||||||||| || || ||||||||||||| ||| ||||||
Sbjct: 142 gtcaggttacacgtccaagtttggtatngtntacgtcgacttcaacac------gctcga 89
Query: 636 acgacaccccaaggcgtcagcctactggttcagagacatgct 677
|| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 88 gcgccaccccaaggcgtcggcctactggttcagggacatgct 47
>gb|AU222984.1|AU222984 AU222984 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2571, mRNA sequence
Length = 467
Score = 157 bits (79), Expect = 1e-035
Identities = 146/170 (85%), Gaps = 6/170 (3%)
Strand = Plus / Plus
Query: 508 gccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaacttc 567
|||||||| || |||||| | ||||||||||||||||| |||||| |||| |||||||||
Sbjct: 122 gccatcgacgagggcgccaatgtggctggctacttcgcctggtctntcctggacaacttc 181
Query: 568 gagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcacgccc 627
||||||| |||||||||||||||||||||||| || || ||||||||||||| |||
Sbjct: 182 gagtggctgtcaggttacacgtccaagtttggtatngtttacgtcgacttcaacac---- 237
Query: 628 aagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgct 677
|||||| || | |||||||| ||| |||||||||||||| ||||||||
Sbjct: 238 --gctcgagcgccnccccaaggngtcggcctactggttcagggacatgct 285
>gb|AU032064.2|AU032064 AU032064 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3421_1A, mRNA sequence
Length = 368
Score = 155 bits (78), Expect = 5e-035
Identities = 146/166 (87%), Gaps = 2/166 (1%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
Sbjct: 118 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggtat 177
Query: 62 gctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagagag 121
||||||||| |||||||||||||| || ||||||||||||||| |||||||||| ||
Sbjct: 178 cttgatccatt-gataaatggacattacccgcagataatgcaagatcttgtgaaagatag 236
Query: 122 gctgccccaagtttactccggagcaagctaagttggtcaagggctc 167
|||| |||||||| ||||| || ||||||| ||||||||||||||
Sbjct: 237 gctg-cccaagttcactcctgaacaagctagattggtcaagggctc 281
>gb|CV731446.1|CV731446 FLO--05-H19.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-H19,
mRNA sequence
Length = 383
Score = 151 bits (76), Expect = 7e-034
Identities = 153/179 (85%), Gaps = 6/179 (3%)
Strand = Plus / Minus
Query: 497 agctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcc 556
|||||| ||| |||||||| || |||||| | |||||||| |||||||| |||||| |||
Sbjct: 346 agctgaagaaggccatcgacgagggcgccaatgtggctgggtacttcgcctggtctttcc 287
Query: 557 tcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgact 616
| |||||||||||||||| |||||||||||||||||||||||| || || ||||||||||
Sbjct: 286 tggacaacttcgagtggctgtcaggttacacgtccaagtttggtattgtttacgtcgact 227
Query: 617 tcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatg 675
||| ||| |||||| || |||||||||| ||| |||||||||||||| ||||||
Sbjct: 226 tcaacac------gctcgagcgccaccccaaggggtcggcctactggttcagggacatg 174
>gb|AACV01007734.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007734, whole
genome shotgun sequence
Length = 18411
Score = 137 bits (69), Expect = 1e-029
Identities = 127/145 (87%), Gaps = 1/145 (0%)
Strand = Plus / Plus
Query: 75 ataaatggacattatccacagataatgcaagatattgtgaaagagaggctgccccaagtt 134
|||||||||||||| || ||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 18235 ataaatggacattacccgcagataatgcaagatcttgtgaaagataggctgccc-aagtt 18293
Query: 135 tactccggagcaagctaagttggtcaagggctcagcggattacattgggatcaatcaata 194
||||| || ||||||| |||||||||||||| || || || ||||| ||||| |||||
Sbjct: 18294 cactcctgaacaagctagattggtcaagggctcggctgactatattggcatcaaccaata 18353
Query: 195 caccgctagctacgtgaagggccag 219
||| ||||||||| |||||||||||
Sbjct: 18354 cacagctagctacatgaagggccag 18378
Score = 77.8 bits (39), Expect = 9e-012
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 486 ctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgc 545
||||||| |||| |||| |||||||||||| || || || | |||| || ||||||||
Sbjct: 10416 ctacctcactgaactgaagaaagccatcgacgatggtgcaaatgtggttgcgtacttcgc 10475
Query: 546 ttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtt 596
|||||||| ||||| ||||||||||||| |||||||||||| || |||||
Sbjct: 10476 atggtctcttctcgataacttcgagtggctgtcaggttacacatcaaagtt 10526
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 18024 aactcaactgaagaccaagcagcggctcaaagagccagggacttccacattggttggt 18081
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||| |||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct: 9563 aactcaactgaagaccaagcagcagctcaaagagccagagacttccatgttggttggt 9620
Score = 54.0 bits (27), Expect = 1e-004
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 145 caagctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagc 204
||||||||| | ||||||||||| || ||||| |||||||||||||||| || |||| |
Sbjct: 9793 caagctaagctagtcaagggctccgcagattattttgggatcaatcaatatactgctaac 9852
Query: 205 tac 207
|||
Sbjct: 9853 tac 9855
Score = 42.1 bits (21), Expect = 0.48
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 74 aataaatggacattatccacagataatgcaagatattgtgaaaga 118
|||||||||||| |||||| | | |||| |||||||||||||||
Sbjct: 9723 aataaatggacaatatccaaaaaatatgcgagatattgtgaaaga 9767
>gb|AU033196.1|AU033196 AU033196 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4984_1Z, mRNA sequence
Length = 437
Score = 135 bits (68), Expect = 4e-029
Identities = 130/149 (87%), Gaps = 8/149 (5%)
Strand = Plus / Plus
Query: 529 gtggctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacg 588
||||||||||||| ||| ||||||| ||| |||||||||||||||| ||||||| |||||
Sbjct: 6 gtggctggctact-cgcctggtctcncctggacaacttcgagtggctgtcaggt-acacg 63
Query: 589 tccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaag 648
||||||||||| ||||||||||||||||||| ||| |||||| || |||||||||
Sbjct: 64 tccaagtttggtatcgtctacgtcgacttcaacac------gctcgagcgccaccccaag 117
Query: 649 gcgtcagcctactggttcagagacatgct 677
||||| |||||||||||||| ||| ||||
Sbjct: 118 gcgtcggcctactggttcagggacntgct 146
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,087,601
Number of Sequences: 438736
Number of extensions: 1087601
Number of successful extensions: 5425
Number of sequences better than 0.5: 91
Number of HSP's better than 0.5 without gapping: 93
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4929
Number of HSP's gapped (non-prelim): 429
length of query: 851
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 830
effective length of database: 2,791,206,460
effective search space: 2316701361800
effective search space used: 2316701361800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)