BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3054736.2.1
(725 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK063280.1| Oryza sativa (japonica cultivar-group) cDNA... 287 4e-075
dbj|AK063319.1| Oryza sativa (japonica cultivar-group) cDNA... 287 4e-075
ref|XM_476102.1| Oryza sativa (japonica cultivar-group), p... 287 4e-075
gb|AC136519.3| Oryza sativa (japonica cultivar-group) chrom... 153 2e-034
gb|AACV01011107.1| Oryza sativa (japonica cultivar-group) c... 153 2e-034
ref|NT_107224.1| Oryza sativa (japonica cultivar-group) 153 2e-034
gb|AC136520.3| Oryza sativa (japonica cultivar-group) chrom... 153 2e-034
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 153 2e-034
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 153 2e-034
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 153 2e-034
dbj|AP003283.1| Oryza sativa (japonica cultivar-group) chro... 44 0.10
dbj|AP003345.3| Oryza sativa (japonica cultivar-group) geno... 44 0.10
dbj|AP003406.3| Oryza sativa (japonica cultivar-group) geno... 44 0.10
gb|AACV01002466.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
gb|AACV01008417.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.10
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 44 0.10
ref|NT_107194.1| Oryza sativa (japonica cultivar-group) 44 0.10
gb|CH401182.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
emb|AL606616.3|OSJN00070 Oryza sativa genomic DNA, chromoso... 44 0.10
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.10
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 44 0.10
gb|AACV01005210.1| Oryza sativa (japonica cultivar-group) c... 42 0.41
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 42 0.41
dbj|AP004786.3| Oryza sativa (japonica cultivar-group) geno... 42 0.41
dbj|AP004118.4| Oryza sativa (japonica cultivar-group) geno... 42 0.41
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.41
>dbj|AK063280.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-C10, full
insert sequence
Length = 1770
Score = 287 bits (145), Expect = 4e-075
Identities = 316/373 (84%)
Strand = Plus / Plus
Query: 1 cagttgtcaatgatccaaatttgaaatggtacgaaagttcttgggaactgttgggtaacg 60
||||||||||||| |||||| |||| ||||| |||||||| |||||| | || || || |
Sbjct: 916 cagttgtcaatgacccaaatatgaagtggtatgaaagttcgtgggaattattaggcaatg 975
Query: 61 agtacttcatgcatgcatctggttcactatatgctctttcttctgaggtggttgaagctc 120
||||||||| ||||||||||||| |||||||||||||||||| |||||||||| | |||
Sbjct: 976 agtacttcagtcatgcatctggtttactatatgctctttcttcggaggtggttggatctc 1035
Query: 121 tagctactgcaaagagtgatagcttaaggatgtttgattatgaagatgttacaatcggcg 180
||||| || |||| | |||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 1036 tagctgctacaaataatgatagtttaaggatgtttgattacgaagatgttactattggat 1095
Query: 181 catggatgcttgctatgaatgtaaagcatgaagacaaccgagcaatgtgtgattcagtat 240
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| | ||
Sbjct: 1096 catggatgcttgccatgaatgtaaagcatgaagacaaccgtgcaatgtgcgattcggcat 1155
Query: 241 gtacccctacctccatcgctgtatgggacagtaagaaatgctcaggtacttgtaacgtcg 300
| || || |||||||| |||||||||||||| |||||||| ||| | | ||||||
Sbjct: 1156 gcactcccacctccattgctgtatgggacagcaagaaatgttcaaattcatgtaacacaa 1215
Query: 301 ctgacaaaataaagcagctccataacaccactgtgtgctcaaagagcccaacgttgccac 360
|||| | | ||||| ||| || ||||| || |||||||||||||||| || |||||||
Sbjct: 1216 ctgagatagtaaaggcgcttcacaacactaccttgtgctcaaagagccctacattgccac 1275
Query: 361 ctgaggtggagga 373
|||||||||||||
Sbjct: 1276 ctgaggtggagga 1288
>dbj|AK063319.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G12, full
insert sequence
Length = 1621
Score = 287 bits (145), Expect = 4e-075
Identities = 316/373 (84%)
Strand = Plus / Plus
Query: 1 cagttgtcaatgatccaaatttgaaatggtacgaaagttcttgggaactgttgggtaacg 60
||||||||||||| |||||| |||| ||||| |||||||| |||||| | || || || |
Sbjct: 916 cagttgtcaatgacccaaatatgaagtggtatgaaagttcgtgggaattattaggcaatg 975
Query: 61 agtacttcatgcatgcatctggttcactatatgctctttcttctgaggtggttgaagctc 120
||||||||| ||||||||||||| |||||||||||||||||| |||||||||| | |||
Sbjct: 976 agtacttcagtcatgcatctggtttactatatgctctttcttcggaggtggttggatctc 1035
Query: 121 tagctactgcaaagagtgatagcttaaggatgtttgattatgaagatgttacaatcggcg 180
||||| || |||| | |||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 1036 tagctgctacaaataatgatagtttaaggatgtttgattacgaagatgttactattggat 1095
Query: 181 catggatgcttgctatgaatgtaaagcatgaagacaaccgagcaatgtgtgattcagtat 240
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| | ||
Sbjct: 1096 catggatgcttgccatgaatgtaaagcatgaagacaaccgtgcaatgtgcgattcggcat 1155
Query: 241 gtacccctacctccatcgctgtatgggacagtaagaaatgctcaggtacttgtaacgtcg 300
| || || |||||||| |||||||||||||| |||||||| ||| | | ||||||
Sbjct: 1156 gcactcccacctccattgctgtatgggacagcaagaaatgttcaaattcatgtaacacaa 1215
Query: 301 ctgacaaaataaagcagctccataacaccactgtgtgctcaaagagcccaacgttgccac 360
|||| | | ||||| ||| || ||||| || |||||||||||||||| || |||||||
Sbjct: 1216 ctgagatagtaaaggcgcttcacaacactaccttgtgctcaaagagccctacattgccac 1275
Query: 361 ctgaggtggagga 373
|||||||||||||
Sbjct: 1276 ctgaggtggagga 1288
>ref|XM_476102.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1173
Score = 287 bits (145), Expect = 4e-075
Identities = 316/373 (84%)
Strand = Plus / Plus
Query: 1 cagttgtcaatgatccaaatttgaaatggtacgaaagttcttgggaactgttgggtaacg 60
||||||||||||| |||||| |||| ||||| |||||||| |||||| | || || || |
Sbjct: 794 cagttgtcaatgacccaaatatgaagtggtatgaaagttcgtgggaattattaggcaatg 853
Query: 61 agtacttcatgcatgcatctggttcactatatgctctttcttctgaggtggttgaagctc 120
||||||||| ||||||||||||| |||||||||||||||||| |||||||||| | |||
Sbjct: 854 agtacttcagtcatgcatctggtttactatatgctctttcttcggaggtggttggatctc 913
Query: 121 tagctactgcaaagagtgatagcttaaggatgtttgattatgaagatgttacaatcggcg 180
||||| || |||| | |||||| ||||||||||||||||| ||||||||||| || ||
Sbjct: 914 tagctgctacaaataatgatagtttaaggatgtttgattacgaagatgttactattggat 973
Query: 181 catggatgcttgctatgaatgtaaagcatgaagacaaccgagcaatgtgtgattcagtat 240
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| | ||
Sbjct: 974 catggatgcttgccatgaatgtaaagcatgaagacaaccgtgcaatgtgcgattcggcat 1033
Query: 241 gtacccctacctccatcgctgtatgggacagtaagaaatgctcaggtacttgtaacgtcg 300
| || || |||||||| |||||||||||||| |||||||| ||| | | ||||||
Sbjct: 1034 gcactcccacctccattgctgtatgggacagcaagaaatgttcaaattcatgtaacacaa 1093
Query: 301 ctgacaaaataaagcagctccataacaccactgtgtgctcaaagagcccaacgttgccac 360
|||| | | ||||| ||| || ||||| || |||||||||||||||| || |||||||
Sbjct: 1094 ctgagatagtaaaggcgcttcacaacactaccttgtgctcaaagagccctacattgccac 1153
Query: 361 ctgaggtggagga 373
|||||||||||||
Sbjct: 1154 ctgaggtggagga 1166
>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23,
complete sequence
Length = 173764
Score = 153 bits (77), Expect = 2e-034
Identities = 122/137 (89%)
Strand = Plus / Minus
Query: 144 ttaaggatgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgta 203
||||||||||||||||| ||||||||||| || || ||||||||||||| |||||||||
Sbjct: 158248 ttaaggatgtttgattacgaagatgttactattggatcatggatgcttgccatgaatgta 158189
Query: 204 aagcatgaagacaaccgagcaatgtgtgattcagtatgtacccctacctccatcgctgta 263
||||||||||||||||| |||||||| ||||| | ||| || || |||||||| ||||||
Sbjct: 158188 aagcatgaagacaaccgtgcaatgtgcgattcggcatgcactcccacctccattgctgta 158129
Query: 264 tgggacagtaagaaatg 280
|||||||| ||||||||
Sbjct: 158128 tgggacagcaagaaatg 158112
Score = 93.7 bits (47), Expect = 1e-016
Identities = 98/115 (85%)
Strand = Plus / Minus
Query: 28 ggtacgaaagttcttgggaactgttgggtaacgagtacttcatgcatgcatctggttcac 87
|||| |||||||| |||||| | || || || |||||||||| ||||||||||||| ||
Sbjct: 158678 ggtatgaaagttcgtgggaattattaggcaatgagtacttcagtcatgcatctggtttac 158619
Query: 88 tatatgctctttcttctgaggtggttgaagctctagctactgcaaagagtgatag 142
|||||||||||||||| |||||||||| | |||||||| || |||| | ||||||
Sbjct: 158618 tatatgctctttcttcggaggtggttggatctctagctgctacaaataatgatag 158564
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 334 tgtgctcaaagagcccaacgttgccacctgaggtggagga 373
|||||||||||||||| || ||||||||||||||||||||
Sbjct: 157396 tgtgctcaaagagccctacattgccacctgaggtggagga 157357
>gb|AACV01011107.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011107, whole
genome shotgun sequence
Length = 66537
Score = 153 bits (77), Expect = 2e-034
Identities = 122/137 (89%)
Strand = Plus / Minus
Query: 144 ttaaggatgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgta 203
||||||||||||||||| ||||||||||| || || ||||||||||||| |||||||||
Sbjct: 17462 ttaaggatgtttgattacgaagatgttactattggatcatggatgcttgccatgaatgta 17403
Query: 204 aagcatgaagacaaccgagcaatgtgtgattcagtatgtacccctacctccatcgctgta 263
||||||||||||||||| |||||||| ||||| | ||| || || |||||||| ||||||
Sbjct: 17402 aagcatgaagacaaccgtgcaatgtgcgattcggcatgcactcccacctccattgctgta 17343
Query: 264 tgggacagtaagaaatg 280
|||||||| ||||||||
Sbjct: 17342 tgggacagcaagaaatg 17326
Score = 93.7 bits (47), Expect = 1e-016
Identities = 98/115 (85%)
Strand = Plus / Minus
Query: 28 ggtacgaaagttcttgggaactgttgggtaacgagtacttcatgcatgcatctggttcac 87
|||| |||||||| |||||| | || || || |||||||||| ||||||||||||| ||
Sbjct: 17892 ggtatgaaagttcgtgggaattattaggcaatgagtacttcagtcatgcatctggtttac 17833
Query: 88 tatatgctctttcttctgaggtggttgaagctctagctactgcaaagagtgatag 142
|||||||||||||||| |||||||||| | |||||||| || |||| | ||||||
Sbjct: 17832 tatatgctctttcttcggaggtggttggatctctagctgctacaaataatgatag 17778
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 334 tgtgctcaaagagcccaacgttgccacctgaggtggagga 373
|||||||||||||||| || ||||||||||||||||||||
Sbjct: 16610 tgtgctcaaagagccctacattgccacctgaggtggagga 16571
>ref|NT_107224.1| Oryza sativa (japonica cultivar-group)
Length = 975437
Score = 153 bits (77), Expect = 2e-034
Identities = 122/137 (89%)
Strand = Plus / Minus
Query: 144 ttaaggatgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgta 203
||||||||||||||||| ||||||||||| || || ||||||||||||| |||||||||
Sbjct: 643902 ttaaggatgtttgattacgaagatgttactattggatcatggatgcttgccatgaatgta 643843
Query: 204 aagcatgaagacaaccgagcaatgtgtgattcagtatgtacccctacctccatcgctgta 263
||||||||||||||||| |||||||| ||||| | ||| || || |||||||| ||||||
Sbjct: 643842 aagcatgaagacaaccgtgcaatgtgcgattcggcatgcactcccacctccattgctgta 643783
Query: 264 tgggacagtaagaaatg 280
|||||||| ||||||||
Sbjct: 643782 tgggacagcaagaaatg 643766
Score = 93.7 bits (47), Expect = 1e-016
Identities = 98/115 (85%)
Strand = Plus / Minus
Query: 28 ggtacgaaagttcttgggaactgttgggtaacgagtacttcatgcatgcatctggttcac 87
|||| |||||||| |||||| | || || || |||||||||| ||||||||||||| ||
Sbjct: 644332 ggtatgaaagttcgtgggaattattaggcaatgagtacttcagtcatgcatctggtttac 644273
Query: 88 tatatgctctttcttctgaggtggttgaagctctagctactgcaaagagtgatag 142
|||||||||||||||| |||||||||| | |||||||| || |||| | ||||||
Sbjct: 644272 tatatgctctttcttcggaggtggttggatctctagctgctacaaataatgatag 644218
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 334 tgtgctcaaagagcccaacgttgccacctgaggtggagga 373
|||||||||||||||| || ||||||||||||||||||||
Sbjct: 643050 tgtgctcaaagagccctacattgccacctgaggtggagga 643011
>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0017O06, complete sequence
Length = 151656
Score = 153 bits (77), Expect = 2e-034
Identities = 122/137 (89%)
Strand = Plus / Minus
Query: 144 ttaaggatgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgta 203
||||||||||||||||| ||||||||||| || || ||||||||||||| |||||||||
Sbjct: 58264 ttaaggatgtttgattacgaagatgttactattggatcatggatgcttgccatgaatgta 58205
Query: 204 aagcatgaagacaaccgagcaatgtgtgattcagtatgtacccctacctccatcgctgta 263
||||||||||||||||| |||||||| ||||| | ||| || || |||||||| ||||||
Sbjct: 58204 aagcatgaagacaaccgtgcaatgtgcgattcggcatgcactcccacctccattgctgta 58145
Query: 264 tgggacagtaagaaatg 280
|||||||| ||||||||
Sbjct: 58144 tgggacagcaagaaatg 58128
Score = 93.7 bits (47), Expect = 1e-016
Identities = 98/115 (85%)
Strand = Plus / Minus
Query: 28 ggtacgaaagttcttgggaactgttgggtaacgagtacttcatgcatgcatctggttcac 87
|||| |||||||| |||||| | || || || |||||||||| ||||||||||||| ||
Sbjct: 58694 ggtatgaaagttcgtgggaattattaggcaatgagtacttcagtcatgcatctggtttac 58635
Query: 88 tatatgctctttcttctgaggtggttgaagctctagctactgcaaagagtgatag 142
|||||||||||||||| |||||||||| | |||||||| || |||| | ||||||
Sbjct: 58634 tatatgctctttcttcggaggtggttggatctctagctgctacaaataatgatag 58580
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 334 tgtgctcaaagagcccaacgttgccacctgaggtggagga 373
|||||||||||||||| || ||||||||||||||||||||
Sbjct: 57412 tgtgctcaaagagccctacattgccacctgaggtggagga 57373
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 153 bits (77), Expect = 2e-034
Identities = 122/137 (89%)
Strand = Plus / Minus
Query: 144 ttaaggatgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgta 203
||||||||||||||||| ||||||||||| || || ||||||||||||| |||||||||
Sbjct: 6001288 ttaaggatgtttgattacgaagatgttactattggatcatggatgcttgccatgaatgta 6001229
Query: 204 aagcatgaagacaaccgagcaatgtgtgattcagtatgtacccctacctccatcgctgta 263
||||||||||||||||| |||||||| ||||| | ||| || || |||||||| ||||||
Sbjct: 6001228 aagcatgaagacaaccgtgcaatgtgcgattcggcatgcactcccacctccattgctgta 6001169
Query: 264 tgggacagtaagaaatg 280
|||||||| ||||||||
Sbjct: 6001168 tgggacagcaagaaatg 6001152
Score = 93.7 bits (47), Expect = 1e-016
Identities = 98/115 (85%)
Strand = Plus / Minus
Query: 28 ggtacgaaagttcttgggaactgttgggtaacgagtacttcatgcatgcatctggttcac 87
|||| |||||||| |||||| | || || || |||||||||| ||||||||||||| ||
Sbjct: 6001718 ggtatgaaagttcgtgggaattattaggcaatgagtacttcagtcatgcatctggtttac 6001659
Query: 88 tatatgctctttcttctgaggtggttgaagctctagctactgcaaagagtgatag 142
|||||||||||||||| |||||||||| | |||||||| || |||| | ||||||
Sbjct: 6001658 tatatgctctttcttcggaggtggttggatctctagctgctacaaataatgatag 6001604
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 334 tgtgctcaaagagcccaacgttgccacctgaggtggagga 373
|||||||||||||||| || ||||||||||||||||||||
Sbjct: 6000436 tgtgctcaaagagccctacattgccacctgaggtggagga 6000397
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 153 bits (77), Expect = 2e-034
Identities = 122/137 (89%)
Strand = Plus / Minus
Query: 144 ttaaggatgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgta 203
||||||||||||||||| ||||||||||| || || ||||||||||||| |||||||||
Sbjct: 6001288 ttaaggatgtttgattacgaagatgttactattggatcatggatgcttgccatgaatgta 6001229
Query: 204 aagcatgaagacaaccgagcaatgtgtgattcagtatgtacccctacctccatcgctgta 263
||||||||||||||||| |||||||| ||||| | ||| || || |||||||| ||||||
Sbjct: 6001228 aagcatgaagacaaccgtgcaatgtgcgattcggcatgcactcccacctccattgctgta 6001169
Query: 264 tgggacagtaagaaatg 280
|||||||| ||||||||
Sbjct: 6001168 tgggacagcaagaaatg 6001152
Score = 93.7 bits (47), Expect = 1e-016
Identities = 98/115 (85%)
Strand = Plus / Minus
Query: 28 ggtacgaaagttcttgggaactgttgggtaacgagtacttcatgcatgcatctggttcac 87
|||| |||||||| |||||| | || || || |||||||||| ||||||||||||| ||
Sbjct: 6001718 ggtatgaaagttcgtgggaattattaggcaatgagtacttcagtcatgcatctggtttac 6001659
Query: 88 tatatgctctttcttctgaggtggttgaagctctagctactgcaaagagtgatag 142
|||||||||||||||| |||||||||| | |||||||| || |||| | ||||||
Sbjct: 6001658 tatatgctctttcttcggaggtggttggatctctagctgctacaaataatgatag 6001604
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 334 tgtgctcaaagagcccaacgttgccacctgaggtggagga 373
|||||||||||||||| || ||||||||||||||||||||
Sbjct: 6000436 tgtgctcaaagagccctacattgccacctgaggtggagga 6000397
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 153 bits (77), Expect = 2e-034
Identities = 122/137 (89%)
Strand = Plus / Minus
Query: 144 ttaaggatgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgta 203
||||||||||||||||| ||||||||||| || || ||||||||||||| |||||||||
Sbjct: 6110695 ttaaggatgtttgattacgaagatgttactattggatcatggatgcttgccatgaatgta 6110636
Query: 204 aagcatgaagacaaccgagcaatgtgtgattcagtatgtacccctacctccatcgctgta 263
||||||||||||||||| |||||||| ||||| | ||| || || |||||||| ||||||
Sbjct: 6110635 aagcatgaagacaaccgtgcaatgtgcgattcggcatgcactcccacctccattgctgta 6110576
Query: 264 tgggacagtaagaaatg 280
|||||||| ||||||||
Sbjct: 6110575 tgggacagcaagaaatg 6110559
Score = 93.7 bits (47), Expect = 1e-016
Identities = 98/115 (85%)
Strand = Plus / Minus
Query: 28 ggtacgaaagttcttgggaactgttgggtaacgagtacttcatgcatgcatctggttcac 87
|||| |||||||| |||||| | || || || |||||||||| ||||||||||||| ||
Sbjct: 6111125 ggtatgaaagttcgtgggaattattaggcaatgagtacttcagtcatgcatctggtttac 6111066
Query: 88 tatatgctctttcttctgaggtggttgaagctctagctactgcaaagagtgatag 142
|||||||||||||||| |||||||||| | |||||||| || |||| | ||||||
Sbjct: 6111065 tatatgctctttcttcggaggtggttggatctctagctgctacaaataatgatag 6111011
Score = 63.9 bits (32), Expect = 1e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 334 tgtgctcaaagagcccaacgttgccacctgaggtggagga 373
|||||||||||||||| || ||||||||||||||||||||
Sbjct: 6109843 tgtgctcaaagagccctacattgccacctgaggtggagga 6109804
>dbj|AP003283.1| Oryza sativa (japonica cultivar-group) chromosome 1 clone P0670C02, ***
SEQUENCING IN PROGRESS ***
Length = 163958
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 63817 ggtggaggaggaagaatagaaa 63838
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0415A04
Length = 160669
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 9286 ggtggaggaggaagaatagaaa 9307
>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1070A12
Length = 148449
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 126367 ggtggaggaggaagaatagaaa 126388
>gb|AACV01002466.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002466, whole
genome shotgun sequence
Length = 45652
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 44809 ggtggaggaggaagaatagaaa 44830
>gb|AACV01008417.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008417, whole
genome shotgun sequence
Length = 10514
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 9928 ggtggaggaggaagaatagaaa 9949
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 33413790 ggtggaggaggaagaatagaaa 33413811
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 7861173 ggtggaggaggaagaatagaaa 7861194
>ref|NT_107194.1| Oryza sativa (japonica cultivar-group)
Length = 2696338
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 650502 ggtggaggaggaagaatagaaa 650523
>gb|CH401182.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000019
genomic scaffold, whole genome shotgun sequence
Length = 1412315
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 604796 ggtggaggaggaagaatagaaa 604817
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 7796724 ggtggaggaggaagaatagaaa 7796745
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 604796 ggtggaggaggaagaatagaaa 604817
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 32998445 ggtggaggaggaagaatagaaa 32998466
>emb|AL606616.3|OSJN00070 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060M15,
complete sequence
Length = 119918
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 41376 ggtggaggaggaagaatagaaa 41397
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 33333120 ggtggaggaggaagaatagaaa 33333141
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
complete sequence
Length = 35498469
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 365 ggtggaggaggaagaatagaaa 386
||||||||||||||||||||||
Sbjct: 650504 ggtggaggaggaagaatagaaa 650525
>gb|AACV01005210.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005210, whole
genome shotgun sequence
Length = 7691
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 366 gtggaggaggaagaatagaaa 386
|||||||||||||||||||||
Sbjct: 2144 gtggaggaggaagaatagaaa 2164
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 366 gtggaggaggaagaatagaaa 386
|||||||||||||||||||||
Sbjct: 3685787 gtggaggaggaagaatagaaa 3685767
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0017H11
Length = 158374
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 366 gtggaggaggaagaatagaaa 386
|||||||||||||||||||||
Sbjct: 89629 gtggaggaggaagaatagaaa 89609
>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1148_D05
Length = 155146
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 366 gtggaggaggaagaatagaaa 386
|||||||||||||||||||||
Sbjct: 144909 gtggaggaggaagaatagaaa 144889
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 366 gtggaggaggaagaatagaaa 386
|||||||||||||||||||||
Sbjct: 14951178 gtggaggaggaagaatagaaa 14951158
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 366 gtggaggaggaagaatagaaa 386
|||||||||||||||||||||
Sbjct: 28404242 gtggaggaggaagaatagaaa 28404222
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 42.1 bits (21), Expect = 0.41
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 366 gtggaggaggaagaatagaaa 386
|||||||||||||||||||||
Sbjct: 28520788 gtggaggaggaagaatagaaa 28520768
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,130,272
Number of Sequences: 438736
Number of extensions: 1130272
Number of successful extensions: 6769
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6562
Number of HSP's gapped (non-prelim): 207
length of query: 725
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 704
effective length of database: 2,791,206,460
effective search space: 1965009347840
effective search space used: 1965009347840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)