BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042568.2.1
(1174 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK059373.1| Oryza sativa (japonica cultivar-group) cDNA... 599 e-168
dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA... 599 e-168
ref|NM_187562.1| Oryza sativa (japonica cultivar-group), p... 599 e-168
gb|D39285.1|D39285 RICR3242A Rice root Oryza sativa (japoni... 264 1e-067
gb|CB666398.1|CB666398 OSJNEd13E16.f OSJNEd Oryza sativa (j... 242 4e-061
gb|D39085.1|D39085 RICR1907A Rice root Oryza sativa (japoni... 238 6e-060
gb|CB666399.1|CB666399 OSJNEd13E16.r OSJNEd Oryza sativa (j... 234 9e-059
gb|CB671522.1|CB671522 OSJNEe05C09.r OSJNEe Oryza sativa (j... 234 9e-059
gb|AC118980.2| Oryza sativa (japonica cultivar-group) chrom... 163 3e-037
gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) c... 163 3e-037
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 163 3e-037
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 163 3e-037
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 163 3e-037
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 163 3e-037
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 163 3e-037
gb|AU184307.1|AU184307 AU184307 Rice root Oryza sativa (jap... 137 2e-029
dbj|AK060258.1| Oryza sativa (japonica cultivar-group) cDNA... 135 6e-029
gb|AU173469.1|AU173469 AU173469 Rice root Oryza sativa (jap... 129 4e-027
gb|AQ859945.1|AQ859945 nbeb0013F14f CUGI Rice BAC Library (... 80 3e-012
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 58 1e-005
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA,... 52 7e-004
gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of ... 50 0.003
dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 50 0.003
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 50 0.003
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 50 0.003
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 50 0.003
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.011
dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.011
dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.011
dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.011
dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.011
dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.011
dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.011
dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.011
dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG213309.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG213581.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG213722.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG213724.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG213745.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG213872.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG213959.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG214163.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG214194.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG021970.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG024540.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG024556.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG024565.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG024874.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG025267.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG025393.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG025457.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG025462.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AG025544.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB154987.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB155450.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB155496.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB157011.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB157080.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB157275.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB157330.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB157416.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB157423.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB157587.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB157668.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB157705.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB157764.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB155376.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB156990.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB157415.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB157466.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.043
gb|DU711782.1|DU711782 LW1258_TT57-38-1 CSIROPIFGRTT_DSTDNA... 46 0.043
gb|DU711787.1|DU711787 LW1185_TT41-340-1-4 CSIROPIFGRTT_DST... 46 0.043
gb|BF889487.1|BF889487 EST056 Subtracted cDNA library of JA... 46 0.043
dbj|AK059569.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.043
dbj|AK071856.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.043
ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.043
gb|AQ362820.2|AQ362820 nbxb0051G23f CUGI Rice BAC Library O... 44 0.17
dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AG213230.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AG214478.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AG023081.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AG205322.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AB154905.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AB155884.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AB155930.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AB156010.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AB156464.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AB157268.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AB157360.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AB157398.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AB157628.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AB157724.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AB157742.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
dbj|AB158052.2| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
gb|DU711657.1|DU711657 LW1226_TT42-25-1-4 CSIROPIFGRTT_DSTD... 44 0.17
dbj|AP005614.2| Oryza sativa (japonica cultivar-group) geno... 44 0.17
gb|AACV01003740.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
dbj|AP001552.1| Oryza sativa (japonica cultivar-group) gene... 44 0.17
dbj|AP001389.1| Oryza sativa (japonica cultivar-group) geno... 44 0.17
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 44 0.17
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 44 0.17
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.17
>dbj|AK059373.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-F03, full
insert sequence
Length = 1245
Score = 599 bits (302), Expect = e-168
Identities = 755/906 (83%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 1055 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 996
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 995 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 936
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagtt 428
|| | ||||||| ||| || | |||||||| || ||||||||||| | || || |||
Sbjct: 935 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtt 876
Query: 429 ttccacaaacccaatttcttcacgacaggtttccatgccatggcaatcgaaatgattccc 488
||||| | ||| | ||||||||| | ||||||||| |||| || ||||||| | ||||
Sbjct: 875 ttccatagacctagtttcttcacaataggtttccacgccacagcgatcgaaagaactccc 816
Query: 489 cacccagttggcacaaatgctagaatggaagcaaaaacatctctcacactgagtttcgta 548
|| ||||||||||||||||||| |||| |||||| |||||| | ||||| || | |||
Sbjct: 815 cagccagttggcacaaatgctaagatggcagcaaacacatctttgacactaaggcttgta 756
Query: 549 aacaaaattgccaggaccagagcagccaaaaccatcaataacgctacacttttgaccaaa 608
|||| || ||||| |||| | ||||||||||||| || ||| | ||||||| |
Sbjct: 755 aacacaactgccacaaccaagcccgccaaaaccatcagtagcgcaatgcttttgataagt 696
Query: 609 cgcaggaacaattggaaatgtaccatggccttggggtttaaaccaaagaccaagaggagg 668
|| |||||||| |||||||| ||||| |||||||| || ||||| || |||| | ||||
Sbjct: 695 cggaggaacaactggaaatgcaccatcgccttgggattcaaaccgaataccagtaagagg 636
Query: 669 atgaaaaggccaccaagcacagcccaagaaatccaatacaccaataaagctgtacttcct 728
| ||||||||||||||||||||||| || |||||||| | ||||| ||| ||||| |
Sbjct: 635 acaaaaaggccaccaagcacagcccatgatatccaatatatcaatagtgctttacttgat 576
Query: 729 ccgctagcattcatgtggtaaacaactccgaattggaaaatgaaaaacctcaggcttaat 788
|||| |||| ||| |||||||||||||| | ||||| |||||||| || | || | |
Sbjct: 575 tcgcttgcatccatatggtaaacaactccatactggaagatgaaaaatcttaaactcagt 516
Query: 789 atggtttccagtatcctccctcgaatgctgtaaatatgttgcagttcttcttcccaccaa 848
| ||||||||||||||||| | || ||| ||||||| ||||||||| ||||||||
Sbjct: 515 acagtttccagtatcctcccaccaacattgtgaatatgtgccagttcttcatcccaccag 456
Query: 849 gcttcccagctttcttctcctttaacaccaataccacctcgataaaacagccaatttgtc 908
|||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct: 455 gcttcccaactttcttctcccttaaccccaataccacctcggtaaaacagccaattcgtc 396
Query: 909 cagtctctgaaatcctcaacaatcttctgccattcaaatccagatgggttaaataaatag 968
|||||||||||||||||||| | |||||||||||||||||||||||| || |||| ||
Sbjct: 395 cagtctctgaaatcctcaacgaccttctgccattcaaatccagatggattgaatatgtat 336
Query: 969 ggagcaaaaagccaagacaatgccataatccaactgcttatagagagtaaaatatagcca 1028
||||||||||||||||| | |||||||| ||| || ||||| || || ||||| ||||||
Sbjct: 335 ggagcaaaaagccaagaaactgccataaaccagctacttatggaaagcaaaatgtagcca 276
Query: 1029 actgctccaccattgttaaacccatacgctaggaagatcaccaacaaaagtgcaacctcc 1088
|||||||||||||||||||| |||||||||| |||||||| |||||||| |||||||||
Sbjct: 275 actgctccaccattgttaaaaccatacgctaaaaagatcactaacaaaagagcaacctcc 216
Query: 1089 atccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgt 1148
| |||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||
Sbjct: 215 aaccctttcacaaaatggctcctggaataaagacggtagttttcagcaaatttgatatgt 156
Query: 1149 cgtacc 1154
||||||
Sbjct: 155 cgtacc 150
>dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020O14, full
insert sequence
Length = 2087
Score = 599 bits (302), Expect = e-168
Identities = 755/906 (83%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 1823 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 1764
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 1763 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 1704
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagtt 428
|| | ||||||| ||| || | |||||||| || ||||||||||| | || || |||
Sbjct: 1703 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtt 1644
Query: 429 ttccacaaacccaatttcttcacgacaggtttccatgccatggcaatcgaaatgattccc 488
||||| | ||| | ||||||||| | ||||||||| |||| || ||||||| | ||||
Sbjct: 1643 ttccatagacctagtttcttcacaataggtttccacgccacagcgatcgaaagaactccc 1584
Query: 489 cacccagttggcacaaatgctagaatggaagcaaaaacatctctcacactgagtttcgta 548
|| ||||||||||||||||||| |||| |||||| |||||| | ||||| || | |||
Sbjct: 1583 cagccagttggcacaaatgctaagatggcagcaaacacatctttgacactaaggcttgta 1524
Query: 549 aacaaaattgccaggaccagagcagccaaaaccatcaataacgctacacttttgaccaaa 608
|||| || ||||| |||| | ||||||||||||| || ||| | ||||||| |
Sbjct: 1523 aacacaactgccacaaccaagcccgccaaaaccatcagtagcgcaatgcttttgataagt 1464
Query: 609 cgcaggaacaattggaaatgtaccatggccttggggtttaaaccaaagaccaagaggagg 668
|| |||||||| |||||||| ||||| |||||||| || ||||| || |||| | ||||
Sbjct: 1463 cggaggaacaactggaaatgcaccatcgccttgggattcaaaccgaataccagtaagagg 1404
Query: 669 atgaaaaggccaccaagcacagcccaagaaatccaatacaccaataaagctgtacttcct 728
| ||||||||||||||||||||||| || |||||||| | ||||| ||| ||||| |
Sbjct: 1403 acaaaaaggccaccaagcacagcccatgatatccaatatatcaatagtgctttacttgat 1344
Query: 729 ccgctagcattcatgtggtaaacaactccgaattggaaaatgaaaaacctcaggcttaat 788
|||| |||| ||| |||||||||||||| | ||||| |||||||| || | || | |
Sbjct: 1343 tcgcttgcatccatatggtaaacaactccatactggaagatgaaaaatcttaaactcagt 1284
Query: 789 atggtttccagtatcctccctcgaatgctgtaaatatgttgcagttcttcttcccaccaa 848
| ||||||||||||||||| | || ||| ||||||| ||||||||| ||||||||
Sbjct: 1283 acagtttccagtatcctcccaccaacattgtgaatatgtgccagttcttcatcccaccag 1224
Query: 849 gcttcccagctttcttctcctttaacaccaataccacctcgataaaacagccaatttgtc 908
|||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct: 1223 gcttcccaactttcttctcccttaaccccaataccacctcggtaaaacagccaattcgtc 1164
Query: 909 cagtctctgaaatcctcaacaatcttctgccattcaaatccagatgggttaaataaatag 968
|||||||||||||||||||| | |||||||||||||||||||||||| || |||| ||
Sbjct: 1163 cagtctctgaaatcctcaacgaccttctgccattcaaatccagatggattgaatatgtat 1104
Query: 969 ggagcaaaaagccaagacaatgccataatccaactgcttatagagagtaaaatatagcca 1028
||||||||||||||||| | |||||||| ||| || ||||| || || ||||| ||||||
Sbjct: 1103 ggagcaaaaagccaagaaactgccataaaccagctacttatggaaagcaaaatgtagcca 1044
Query: 1029 actgctccaccattgttaaacccatacgctaggaagatcaccaacaaaagtgcaacctcc 1088
|||||||||||||||||||| |||||||||| |||||||| |||||||| |||||||||
Sbjct: 1043 actgctccaccattgttaaaaccatacgctaaaaagatcactaacaaaagagcaacctcc 984
Query: 1089 atccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgt 1148
| |||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||
Sbjct: 983 aaccctttcacaaaatggctcctggaataaagacggtagttttcagcaaatttgatatgt 924
Query: 1149 cgtacc 1154
||||||
Sbjct: 923 cgtacc 918
>ref|NM_187562.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 6168
Score = 599 bits (302), Expect = e-168
Identities = 755/906 (83%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 4853 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 4794
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 4793 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 4734
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagtt 428
|| | ||||||| ||| || | |||||||| || ||||||||||| | || || |||
Sbjct: 4733 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtt 4674
Query: 429 ttccacaaacccaatttcttcacgacaggtttccatgccatggcaatcgaaatgattccc 488
||||| | ||| | ||||||||| | ||||||||| |||| || ||||||| | ||||
Sbjct: 4673 ttccatagacctagtttcttcacaataggtttccacgccacagcgatcgaaagaactccc 4614
Query: 489 cacccagttggcacaaatgctagaatggaagcaaaaacatctctcacactgagtttcgta 548
|| ||||||||||||||||||| |||| |||||| |||||| | ||||| || | |||
Sbjct: 4613 cagccagttggcacaaatgctaagatggcagcaaacacatctttgacactaaggcttgta 4554
Query: 549 aacaaaattgccaggaccagagcagccaaaaccatcaataacgctacacttttgaccaaa 608
|||| || ||||| |||| | ||||||||||||| || ||| | ||||||| |
Sbjct: 4553 aacacaactgccacaaccaagcccgccaaaaccatcagtagcgcaatgcttttgataagt 4494
Query: 609 cgcaggaacaattggaaatgtaccatggccttggggtttaaaccaaagaccaagaggagg 668
|| |||||||| |||||||| ||||| |||||||| || ||||| || |||| | ||||
Sbjct: 4493 cggaggaacaactggaaatgcaccatcgccttgggattcaaaccgaataccagtaagagg 4434
Query: 669 atgaaaaggccaccaagcacagcccaagaaatccaatacaccaataaagctgtacttcct 728
| ||||||||||||||||||||||| || |||||||| | ||||| ||| ||||| |
Sbjct: 4433 acaaaaaggccaccaagcacagcccatgatatccaatatatcaatagtgctttacttgat 4374
Query: 729 ccgctagcattcatgtggtaaacaactccgaattggaaaatgaaaaacctcaggcttaat 788
|||| |||| ||| |||||||||||||| | ||||| |||||||| || | || | |
Sbjct: 4373 tcgcttgcatccatatggtaaacaactccatactggaagatgaaaaatcttaaactcagt 4314
Query: 789 atggtttccagtatcctccctcgaatgctgtaaatatgttgcagttcttcttcccaccaa 848
| ||||||||||||||||| | || ||| ||||||| ||||||||| ||||||||
Sbjct: 4313 acagtttccagtatcctcccaccaacattgtgaatatgtgccagttcttcatcccaccag 4254
Query: 849 gcttcccagctttcttctcctttaacaccaataccacctcgataaaacagccaatttgtc 908
|||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct: 4253 gcttcccaactttcttctcccttaaccccaataccacctcggtaaaacagccaattcgtc 4194
Query: 909 cagtctctgaaatcctcaacaatcttctgccattcaaatccagatgggttaaataaatag 968
|||||||||||||||||||| | |||||||||||||||||||||||| || |||| ||
Sbjct: 4193 cagtctctgaaatcctcaacgaccttctgccattcaaatccagatggattgaatatgtat 4134
Query: 969 ggagcaaaaagccaagacaatgccataatccaactgcttatagagagtaaaatatagcca 1028
||||||||||||||||| | |||||||| ||| || ||||| || || ||||| ||||||
Sbjct: 4133 ggagcaaaaagccaagaaactgccataaaccagctacttatggaaagcaaaatgtagcca 4074
Query: 1029 actgctccaccattgttaaacccatacgctaggaagatcaccaacaaaagtgcaacctcc 1088
|||||||||||||||||||| |||||||||| |||||||| |||||||| |||||||||
Sbjct: 4073 actgctccaccattgttaaaaccatacgctaaaaagatcactaacaaaagagcaacctcc 4014
Query: 1089 atccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgt 1148
| |||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||
Sbjct: 4013 aaccctttcacaaaatggctcctggaataaagacggtagttttcagcaaatttgatatgt 3954
Query: 1149 cgtacc 1154
||||||
Sbjct: 3953 cgtacc 3948
>gb|D39285.1|D39285 RICR3242A Rice root Oryza sativa (japonica cultivar-group) cDNA, mRNA
sequence
Length = 362
Score = 264 bits (133), Expect = 1e-067
Identities = 226/257 (87%)
Strand = Plus / Minus
Query: 792 gtttccagtatcctccctcgaatgctgtaaatatgttgcagttcttcttcccaccaagct 851
||||||||||||||||| | || ||| ||||||| ||||||||| |||||||| |||
Sbjct: 259 gtttccagtatcctcccaccaacattgtgaatatgtgccagttcttcatcccaccaggct 200
Query: 852 tcccagctttcttctcctttaacaccaataccacctcgataaaacagccaatttgtccag 911
||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 199 tcccaactttcttctcccttaaccccaataccacctcggtaaaacagccaattcgtccag 140
Query: 912 tctctgaaatcctcaacaatcttctgccattcaaatccagatgggttaaataaataggga 971
||||||||||||||||| | |||||||||||||||||||||||| || |||| || |||
Sbjct: 139 tctctgaaatcctcaacgaccttctgccattcaaatccagatggattgaatatgtatgga 80
Query: 972 gcaaaaagccaagacaatgccataatccaactgcttatagagagtaaaatatagccaact 1031
|||||||||||||| | |||||||| ||| || ||||| || || ||||| |||||||||
Sbjct: 79 gcaaaaagccaagaaactgccataaaccagctacttatggaaagcaaaatgtagccaact 20
Query: 1032 gctccaccattgttaaa 1048
|||||||||||||||||
Sbjct: 19 gctccaccattgttaaa 3
>gb|CB666398.1|CB666398 OSJNEd13E16.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13E16 5', mRNA sequence
Length = 803
Score = 242 bits (122), Expect = 4e-061
Identities = 410/506 (81%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 506 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 447
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 446 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 387
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagtt 428
|| | ||||||| ||| || | |||||||| || ||||||||||| | || || |||
Sbjct: 386 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtt 327
Query: 429 ttccacaaacccaatttcttcacgacaggtttccatgccatggcaatcgaaatgattccc 488
||||| | ||| | ||||||||| | ||||||||| |||| || ||||||| | ||||
Sbjct: 326 ttccatagacctagtttcttcacaataggtttccacgccacagcgatcgaaagaactccc 267
Query: 489 cacccagttggcacaaatgctagaatggaagcaaaaacatctctcacactgagtttcgta 548
|| ||||||||||||||||||| |||| |||||| |||||| | ||||| || | |||
Sbjct: 266 cagccagttggcacaaatgctaagatggcagcaaacacatctttgacactaaggcttgta 207
Query: 549 aacaaaattgccaggaccagagcagccaaaaccatcaataacgctacacttttgaccaaa 608
|||| || ||||| |||| | ||||||||||||| || ||| | ||||||| |
Sbjct: 206 aacacaactgccacaaccaagcccgccaaaaccatcagtagcgcaatgcttttgataagt 147
Query: 609 cgcaggaacaattggaaatgtaccatggccttggggtttaaaccaaagaccaagaggagg 668
|| |||||||| |||||||| ||||| |||||||| || ||||| || |||| | ||||
Sbjct: 146 cggaggaacaactggaaatgcaccatcgccttgggattcaaaccgaataccagtaagagg 87
Query: 669 atgaaaaggccaccaagcacagcccaagaaatccaatacaccaataaagctgtacttcct 728
| ||||||||||||||||||||||| || |||||||| | ||||| ||| ||||| |
Sbjct: 86 acaaaaaggccaccaagcacagcccatgatatccaatatatcaatagtgctttacttgat 27
Query: 729 ccgctagcattcatgtggtaaacaac 754
|||| |||| ||| |||||||||||
Sbjct: 26 tcgcttgcatccatatggtaaacaac 1
>gb|D39085.1|D39085 RICR1907A Rice root Oryza sativa (japonica cultivar-group) cDNA, mRNA
sequence
Length = 364
Score = 238 bits (120), Expect = 6e-060
Identities = 222/257 (86%)
Strand = Plus / Minus
Query: 792 gtttccagtatcctccctcgaatgctgtaaatatgttgcagttcttcttcccaccaagct 851
||||||||||||||||| | || ||| ||||||| ||||||||| |||||||| |||
Sbjct: 271 gtttccagtatcctcccaccaacattgtgaatatgtgccagttcttcatcccaccaggct 212
Query: 852 tcccagctttcttctcctttaacaccaataccacctcgataaaacagccaatttgtccag 911
||| | ||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 211 tccnaactttcttctcccttaaccccaataccacctcggtaaaacagccaattcgtccag 152
Query: 912 tctctgaaatcctcaacaatcttctgccattcaaatccagatgggttaaataaataggga 971
||||||||||||||||| | ||||||||||||||||||| |||| || || | || |||
Sbjct: 151 tctctgaaatcctcaacgaccttctgccattcaaatccanatggattgaanatgtatgga 92
Query: 972 gcaaaaagccaagacaatgccataatccaactgcttatagagagtaaaatatagccaact 1031
|||||||||||||| | |||||||| ||| || || || || || ||||| |||||||||
Sbjct: 91 gcaaaaagccaagaaactgccataaaccagctactaatggaaagcaaaatgtagccaact 32
Query: 1032 gctccaccattgttaaa 1048
|||||||||||||||||
Sbjct: 31 gctccaccattgttaaa 15
>gb|CB666399.1|CB666399 OSJNEd13E16.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13E16 3', mRNA sequence
Length = 802
Score = 234 bits (118), Expect = 9e-059
Identities = 373/458 (81%)
Strand = Plus / Plus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 307 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 366
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 367 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 426
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagtt 428
|| | ||||||| ||| || | |||||||| || ||||||||||| | || || |||
Sbjct: 427 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtt 486
Query: 429 ttccacaaacccaatttcttcacgacaggtttccatgccatggcaatcgaaatgattccc 488
||||| | ||| | ||||||||| | ||||||||| |||| || ||||||| | ||||
Sbjct: 487 ttccatagacctagtttcttcacaataggtttccacgccacagcgatcgaaagaactccc 546
Query: 489 cacccagttggcacaaatgctagaatggaagcaaaaacatctctcacactgagtttcgta 548
|| ||||||||||||||||||| |||| |||||| |||||| | ||||| || | |||
Sbjct: 547 cagccagttggcacaaatgctaagatggcagcaaacacatctttgacactaaggcttgta 606
Query: 549 aacaaaattgccaggaccagagcagccaaaaccatcaataacgctacacttttgaccaaa 608
|||| || ||||| |||| | ||||||||||||| || ||| | ||||||| |
Sbjct: 607 aacacaactgccacaaccaagcccgccaaaaccatcagtagcgcaatgcttttgataagt 666
Query: 609 cgcaggaacaattggaaatgtaccatggccttggggtttaaaccaaagaccaagaggagg 668
|| |||||||| |||||||| ||||| |||||||| || ||||| || |||| | ||||
Sbjct: 667 cggaggaacaactggaaatgcaccatcgccttgggattcaaaccgaataccagtaagagg 726
Query: 669 atgaaaaggccaccaagcacagcccaagaaatccaata 706
| ||||||||||||||||||||||| || ||||||||
Sbjct: 727 acaaaaaggccaccaagcacagcccatgatatccaata 764
>gb|CB671522.1|CB671522 OSJNEe05C09.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05C09 3', mRNA sequence
Length = 757
Score = 234 bits (118), Expect = 9e-059
Identities = 373/458 (81%)
Strand = Plus / Plus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 261 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 320
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 321 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 380
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagtt 428
|| | ||||||| ||| || | |||||||| || ||||||||||| | || || |||
Sbjct: 381 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtt 440
Query: 429 ttccacaaacccaatttcttcacgacaggtttccatgccatggcaatcgaaatgattccc 488
||||| | ||| | ||||||||| | ||||||||| |||| || ||||||| | ||||
Sbjct: 441 ttccatagacctagtttcttcacaataggtttccacgccacagcgatcgaaagaactccc 500
Query: 489 cacccagttggcacaaatgctagaatggaagcaaaaacatctctcacactgagtttcgta 548
|| ||||||||||||||||||| |||| |||||| |||||| | ||||| || | |||
Sbjct: 501 cagccagttggcacaaatgctaagatggcagcaaacacatctttgacactaaggcttgta 560
Query: 549 aacaaaattgccaggaccagagcagccaaaaccatcaataacgctacacttttgaccaaa 608
|||| || ||||| |||| | ||||||||||||| || ||| | ||||||| |
Sbjct: 561 aacacaactgccacaaccaagcccgccaaaaccatcagtagcgcaatgcttttgataagt 620
Query: 609 cgcaggaacaattggaaatgtaccatggccttggggtttaaaccaaagaccaagaggagg 668
|| |||||||| |||||||| ||||| |||||||| || ||||| || |||| | ||||
Sbjct: 621 cggaggaacaactggaaatgcaccatcgccttgggattcaaaccgaataccagtaagagg 680
Query: 669 atgaaaaggccaccaagcacagcccaagaaatccaata 706
| ||||||||||||||||||||||| || ||||||||
Sbjct: 681 acaaaaaggccaccaagcacagcccatgatatccaata 718
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11,
complete sequence
Length = 126827
Score = 163 bits (82), Expect = 3e-037
Identities = 139/158 (87%)
Strand = Plus / Minus
Query: 932 cttctgccattcaaatccagatgggttaaataaatagggagcaaaaagccaagacaatgc 991
|||||||||||||||||||||||| || |||| || ||||||||||||||||| | |||
Sbjct: 72941 cttctgccattcaaatccagatggattgaatatgtatggagcaaaaagccaagaaactgc 72882
Query: 992 cataatccaactgcttatagagagtaaaatatagccaactgctccaccattgttaaaccc 1051
||||| ||| || ||||| || || ||||| |||||||||||||||||||||||||| ||
Sbjct: 72881 cataaaccagctacttatggaaagcaaaatgtagccaactgctccaccattgttaaaacc 72822
Query: 1052 atacgctaggaagatcaccaacaaaagtgcaacctcca 1089
|||||||| |||||||| |||||||| ||||||||||
Sbjct: 72821 atacgctaaaaagatcactaacaaaagagcaacctcca 72784
Score = 151 bits (76), Expect = 1e-033
Identities = 184/220 (83%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 75252 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 75193
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 75192 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 75133
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagtt 428
|| | ||||||| ||| || | |||||||| || ||||||||||| | || || |||
Sbjct: 75132 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtt 75073
Query: 429 ttccacaaacccaatttcttcacgacaggtttccatgcca 468
||||| | ||| | ||||||||| | ||||||||| ||||
Sbjct: 75072 ttccatagacctagtttcttcacaataggtttccacgcca 75033
Score = 141 bits (71), Expect = 1e-030
Identities = 92/99 (92%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
||||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 73129 cagttcttcatcccaccaggcttcccaactttcttctcccttaaccccaataccacctcg 73070
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctcaac 928
|||||||||||||| |||||||||||||||||||||||
Sbjct: 73069 gtaaaacagccaattcgtccagtctctgaaatcctcaac 73031
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 1091 ccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgtcg 1150
|||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||
Sbjct: 72707 ccctttcacaaaatggctcctggaataaagacggtagttttcagcaaatttgatatgtcg 72648
Query: 1151 tacc 1154
||||
Sbjct: 72647 tacc 72644
Score = 63.9 bits (32), Expect = 2e-007
Identities = 134/168 (79%)
Strand = Plus / Minus
Query: 485 tccccacccagttggcacaaatgctagaatggaagcaaaaacatctctcacactgagttt 544
|||||| ||||||||||||||||||| |||| |||||| |||||| | ||||| || |
Sbjct: 74363 tccccagccagttggcacaaatgctaagatggcagcaaacacatctttgacactaaggct 74304
Query: 545 cgtaaacaaaattgccaggaccagagcagccaaaaccatcaataacgctacacttttgac 604
||||||| || ||||| |||| | ||||||||||||| || ||| | |||||||
Sbjct: 74303 tgtaaacacaactgccacaaccaagcccgccaaaaccatcagtagcgcaatgcttttgat 74244
Query: 605 caaacgcaggaacaattggaaatgtaccatggccttggggtttaaacc 652
| || |||||||| |||||||| ||||| |||||||| || |||||
Sbjct: 74243 aagtcggaggaacaactggaaatgcaccatcgccttgggattcaaacc 74196
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 672 aaaaggccaccaagcacagcccaagaaatccaata 706
||||||||||||||||||||||| || ||||||||
Sbjct: 74086 aaaaggccaccaagcacagcccatgatatccaata 74052
>gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005773, whole
genome shotgun sequence
Length = 82514
Score = 163 bits (82), Expect = 3e-037
Identities = 139/158 (87%)
Strand = Plus / Minus
Query: 932 cttctgccattcaaatccagatgggttaaataaatagggagcaaaaagccaagacaatgc 991
|||||||||||||||||||||||| || |||| || ||||||||||||||||| | |||
Sbjct: 24968 cttctgccattcaaatccagatggattgaatatgtatggagcaaaaagccaagaaactgc 24909
Query: 992 cataatccaactgcttatagagagtaaaatatagccaactgctccaccattgttaaaccc 1051
||||| ||| || ||||| || || ||||| |||||||||||||||||||||||||| ||
Sbjct: 24908 cataaaccagctacttatggaaagcaaaatgtagccaactgctccaccattgttaaaacc 24849
Query: 1052 atacgctaggaagatcaccaacaaaagtgcaacctcca 1089
|||||||| |||||||| |||||||| ||||||||||
Sbjct: 24848 atacgctaaaaagatcactaacaaaagagcaacctcca 24811
Score = 151 bits (76), Expect = 1e-033
Identities = 184/220 (83%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 27278 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 27219
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 27218 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 27159
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagtt 428
|| | ||||||| ||| || | |||||||| || ||||||||||| | || || |||
Sbjct: 27158 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtt 27099
Query: 429 ttccacaaacccaatttcttcacgacaggtttccatgcca 468
||||| | ||| | ||||||||| | ||||||||| ||||
Sbjct: 27098 ttccatagacctagtttcttcacaataggtttccacgcca 27059
Score = 141 bits (71), Expect = 1e-030
Identities = 92/99 (92%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
||||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 25156 cagttcttcatcccaccaggcttcccaactttcttctcccttaaccccaataccacctcg 25097
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctcaac 928
|||||||||||||| |||||||||||||||||||||||
Sbjct: 25096 gtaaaacagccaattcgtccagtctctgaaatcctcaac 25058
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 1091 ccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgtcg 1150
|||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||
Sbjct: 24734 ccctttcacaaaatggctcctggaataaagacggtagttttcagcaaatttgatatgtcg 24675
Query: 1151 tacc 1154
||||
Sbjct: 24674 tacc 24671
Score = 63.9 bits (32), Expect = 2e-007
Identities = 134/168 (79%)
Strand = Plus / Minus
Query: 485 tccccacccagttggcacaaatgctagaatggaagcaaaaacatctctcacactgagttt 544
|||||| ||||||||||||||||||| |||| |||||| |||||| | ||||| || |
Sbjct: 26390 tccccagccagttggcacaaatgctaagatggcagcaaacacatctttgacactaaggct 26331
Query: 545 cgtaaacaaaattgccaggaccagagcagccaaaaccatcaataacgctacacttttgac 604
||||||| || ||||| |||| | ||||||||||||| || ||| | |||||||
Sbjct: 26330 tgtaaacacaactgccacaaccaagcccgccaaaaccatcagtagcgcaatgcttttgat 26271
Query: 605 caaacgcaggaacaattggaaatgtaccatggccttggggtttaaacc 652
| || |||||||| |||||||| ||||| |||||||| || |||||
Sbjct: 26270 aagtcggaggaacaactggaaatgcaccatcgccttgggattcaaacc 26223
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 672 aaaaggccaccaagcacagcccaagaaatccaata 706
||||||||||||||||||||||| || ||||||||
Sbjct: 26113 aaaaggccaccaagcacagcccatgatatccaata 26079
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 163 bits (82), Expect = 3e-037
Identities = 139/158 (87%)
Strand = Plus / Minus
Query: 932 cttctgccattcaaatccagatgggttaaataaatagggagcaaaaagccaagacaatgc 991
|||||||||||||||||||||||| || |||| || ||||||||||||||||| | |||
Sbjct: 1052724 cttctgccattcaaatccagatggattgaatatgtatggagcaaaaagccaagaaactgc 1052665
Query: 992 cataatccaactgcttatagagagtaaaatatagccaactgctccaccattgttaaaccc 1051
||||| ||| || ||||| || || ||||| |||||||||||||||||||||||||| ||
Sbjct: 1052664 cataaaccagctacttatggaaagcaaaatgtagccaactgctccaccattgttaaaacc 1052605
Query: 1052 atacgctaggaagatcaccaacaaaagtgcaacctcca 1089
|||||||| |||||||| |||||||| ||||||||||
Sbjct: 1052604 atacgctaaaaagatcactaacaaaagagcaacctcca 1052567
Score = 151 bits (76), Expect = 1e-033
Identities = 184/220 (83%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 1055035 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 1054976
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 1054975 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 1054916
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagtt 428
|| | ||||||| ||| || | |||||||| || ||||||||||| | || || |||
Sbjct: 1054915 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtt 1054856
Query: 429 ttccacaaacccaatttcttcacgacaggtttccatgcca 468
||||| | ||| | ||||||||| | ||||||||| ||||
Sbjct: 1054855 ttccatagacctagtttcttcacaataggtttccacgcca 1054816
Score = 141 bits (71), Expect = 1e-030
Identities = 92/99 (92%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
||||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 1052912 cagttcttcatcccaccaggcttcccaactttcttctcccttaaccccaataccacctcg 1052853
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctcaac 928
|||||||||||||| |||||||||||||||||||||||
Sbjct: 1052852 gtaaaacagccaattcgtccagtctctgaaatcctcaac 1052814
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 1091 ccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgtcg 1150
|||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||
Sbjct: 1052490 ccctttcacaaaatggctcctggaataaagacggtagttttcagcaaatttgatatgtcg 1052431
Query: 1151 tacc 1154
||||
Sbjct: 1052430 tacc 1052427
Score = 63.9 bits (32), Expect = 2e-007
Identities = 134/168 (79%)
Strand = Plus / Minus
Query: 485 tccccacccagttggcacaaatgctagaatggaagcaaaaacatctctcacactgagttt 544
|||||| ||||||||||||||||||| |||| |||||| |||||| | ||||| || |
Sbjct: 1054146 tccccagccagttggcacaaatgctaagatggcagcaaacacatctttgacactaaggct 1054087
Query: 545 cgtaaacaaaattgccaggaccagagcagccaaaaccatcaataacgctacacttttgac 604
||||||| || ||||| |||| | ||||||||||||| || ||| | |||||||
Sbjct: 1054086 tgtaaacacaactgccacaaccaagcccgccaaaaccatcagtagcgcaatgcttttgat 1054027
Query: 605 caaacgcaggaacaattggaaatgtaccatggccttggggtttaaacc 652
| || |||||||| |||||||| ||||| |||||||| || |||||
Sbjct: 1054026 aagtcggaggaacaactggaaatgcaccatcgccttgggattcaaacc 1053979
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 672 aaaaggccaccaagcacagcccaagaaatccaata 706
||||||||||||||||||||||| || ||||||||
Sbjct: 1053869 aaaaggccaccaagcacagcccatgatatccaata 1053835
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 163 bits (82), Expect = 3e-037
Identities = 139/158 (87%)
Strand = Plus / Minus
Query: 932 cttctgccattcaaatccagatgggttaaataaatagggagcaaaaagccaagacaatgc 991
|||||||||||||||||||||||| || |||| || ||||||||||||||||| | |||
Sbjct: 1050903 cttctgccattcaaatccagatggattgaatatgtatggagcaaaaagccaagaaactgc 1050844
Query: 992 cataatccaactgcttatagagagtaaaatatagccaactgctccaccattgttaaaccc 1051
||||| ||| || ||||| || || ||||| |||||||||||||||||||||||||| ||
Sbjct: 1050843 cataaaccagctacttatggaaagcaaaatgtagccaactgctccaccattgttaaaacc 1050784
Query: 1052 atacgctaggaagatcaccaacaaaagtgcaacctcca 1089
|||||||| |||||||| |||||||| ||||||||||
Sbjct: 1050783 atacgctaaaaagatcactaacaaaagagcaacctcca 1050746
Score = 151 bits (76), Expect = 1e-033
Identities = 184/220 (83%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 1053213 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 1053154
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 1053153 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 1053094
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagtt 428
|| | ||||||| ||| || | |||||||| || ||||||||||| | || || |||
Sbjct: 1053093 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtt 1053034
Query: 429 ttccacaaacccaatttcttcacgacaggtttccatgcca 468
||||| | ||| | ||||||||| | ||||||||| ||||
Sbjct: 1053033 ttccatagacctagtttcttcacaataggtttccacgcca 1052994
Score = 141 bits (71), Expect = 1e-030
Identities = 92/99 (92%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
||||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 1051091 cagttcttcatcccaccaggcttcccaactttcttctcccttaaccccaataccacctcg 1051032
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctcaac 928
|||||||||||||| |||||||||||||||||||||||
Sbjct: 1051031 gtaaaacagccaattcgtccagtctctgaaatcctcaac 1050993
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 1091 ccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgtcg 1150
|||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||
Sbjct: 1050669 ccctttcacaaaatggctcctggaataaagacggtagttttcagcaaatttgatatgtcg 1050610
Query: 1151 tacc 1154
||||
Sbjct: 1050609 tacc 1050606
Score = 63.9 bits (32), Expect = 2e-007
Identities = 134/168 (79%)
Strand = Plus / Minus
Query: 485 tccccacccagttggcacaaatgctagaatggaagcaaaaacatctctcacactgagttt 544
|||||| ||||||||||||||||||| |||| |||||| |||||| | ||||| || |
Sbjct: 1052325 tccccagccagttggcacaaatgctaagatggcagcaaacacatctttgacactaaggct 1052266
Query: 545 cgtaaacaaaattgccaggaccagagcagccaaaaccatcaataacgctacacttttgac 604
||||||| || ||||| |||| | ||||||||||||| || ||| | |||||||
Sbjct: 1052265 tgtaaacacaactgccacaaccaagcccgccaaaaccatcagtagcgcaatgcttttgat 1052206
Query: 605 caaacgcaggaacaattggaaatgtaccatggccttggggtttaaacc 652
| || |||||||| |||||||| ||||| |||||||| || |||||
Sbjct: 1052205 aagtcggaggaacaactggaaatgcaccatcgccttgggattcaaacc 1052158
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 672 aaaaggccaccaagcacagcccaagaaatccaata 706
||||||||||||||||||||||| || ||||||||
Sbjct: 1052048 aaaaggccaccaagcacagcccatgatatccaata 1052014
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 163 bits (82), Expect = 3e-037
Identities = 139/158 (87%)
Strand = Plus / Minus
Query: 932 cttctgccattcaaatccagatgggttaaataaatagggagcaaaaagccaagacaatgc 991
|||||||||||||||||||||||| || |||| || ||||||||||||||||| | |||
Sbjct: 1243265 cttctgccattcaaatccagatggattgaatatgtatggagcaaaaagccaagaaactgc 1243206
Query: 992 cataatccaactgcttatagagagtaaaatatagccaactgctccaccattgttaaaccc 1051
||||| ||| || ||||| || || ||||| |||||||||||||||||||||||||| ||
Sbjct: 1243205 cataaaccagctacttatggaaagcaaaatgtagccaactgctccaccattgttaaaacc 1243146
Query: 1052 atacgctaggaagatcaccaacaaaagtgcaacctcca 1089
|||||||| |||||||| |||||||| ||||||||||
Sbjct: 1243145 atacgctaaaaagatcactaacaaaagagcaacctcca 1243108
Score = 151 bits (76), Expect = 1e-033
Identities = 184/220 (83%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 1245575 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 1245516
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 1245515 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 1245456
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagtt 428
|| | ||||||| ||| || | |||||||| || ||||||||||| | || || |||
Sbjct: 1245455 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtt 1245396
Query: 429 ttccacaaacccaatttcttcacgacaggtttccatgcca 468
||||| | ||| | ||||||||| | ||||||||| ||||
Sbjct: 1245395 ttccatagacctagtttcttcacaataggtttccacgcca 1245356
Score = 141 bits (71), Expect = 1e-030
Identities = 92/99 (92%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
||||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 1243453 cagttcttcatcccaccaggcttcccaactttcttctcccttaaccccaataccacctcg 1243394
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctcaac 928
|||||||||||||| |||||||||||||||||||||||
Sbjct: 1243393 gtaaaacagccaattcgtccagtctctgaaatcctcaac 1243355
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 1091 ccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgtcg 1150
|||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||
Sbjct: 1243031 ccctttcacaaaatggctcctggaataaagacggtagttttcagcaaatttgatatgtcg 1242972
Query: 1151 tacc 1154
||||
Sbjct: 1242971 tacc 1242968
Score = 63.9 bits (32), Expect = 2e-007
Identities = 134/168 (79%)
Strand = Plus / Minus
Query: 485 tccccacccagttggcacaaatgctagaatggaagcaaaaacatctctcacactgagttt 544
|||||| ||||||||||||||||||| |||| |||||| |||||| | ||||| || |
Sbjct: 1244687 tccccagccagttggcacaaatgctaagatggcagcaaacacatctttgacactaaggct 1244628
Query: 545 cgtaaacaaaattgccaggaccagagcagccaaaaccatcaataacgctacacttttgac 604
||||||| || ||||| |||| | ||||||||||||| || ||| | |||||||
Sbjct: 1244627 tgtaaacacaactgccacaaccaagcccgccaaaaccatcagtagcgcaatgcttttgat 1244568
Query: 605 caaacgcaggaacaattggaaatgtaccatggccttggggtttaaacc 652
| || |||||||| |||||||| ||||| |||||||| || |||||
Sbjct: 1244567 aagtcggaggaacaactggaaatgcaccatcgccttgggattcaaacc 1244520
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 672 aaaaggccaccaagcacagcccaagaaatccaata 706
||||||||||||||||||||||| || ||||||||
Sbjct: 1244410 aaaaggccaccaagcacagcccatgatatccaata 1244376
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 163 bits (82), Expect = 3e-037
Identities = 139/158 (87%)
Strand = Plus / Minus
Query: 932 cttctgccattcaaatccagatgggttaaataaatagggagcaaaaagccaagacaatgc 991
|||||||||||||||||||||||| || |||| || ||||||||||||||||| | |||
Sbjct: 1052724 cttctgccattcaaatccagatggattgaatatgtatggagcaaaaagccaagaaactgc 1052665
Query: 992 cataatccaactgcttatagagagtaaaatatagccaactgctccaccattgttaaaccc 1051
||||| ||| || ||||| || || ||||| |||||||||||||||||||||||||| ||
Sbjct: 1052664 cataaaccagctacttatggaaagcaaaatgtagccaactgctccaccattgttaaaacc 1052605
Query: 1052 atacgctaggaagatcaccaacaaaagtgcaacctcca 1089
|||||||| |||||||| |||||||| ||||||||||
Sbjct: 1052604 atacgctaaaaagatcactaacaaaagagcaacctcca 1052567
Score = 151 bits (76), Expect = 1e-033
Identities = 184/220 (83%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 1055035 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 1054976
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 1054975 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 1054916
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagtt 428
|| | ||||||| ||| || | |||||||| || ||||||||||| | || || |||
Sbjct: 1054915 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtt 1054856
Query: 429 ttccacaaacccaatttcttcacgacaggtttccatgcca 468
||||| | ||| | ||||||||| | ||||||||| ||||
Sbjct: 1054855 ttccatagacctagtttcttcacaataggtttccacgcca 1054816
Score = 141 bits (71), Expect = 1e-030
Identities = 92/99 (92%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
||||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 1052912 cagttcttcatcccaccaggcttcccaactttcttctcccttaaccccaataccacctcg 1052853
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctcaac 928
|||||||||||||| |||||||||||||||||||||||
Sbjct: 1052852 gtaaaacagccaattcgtccagtctctgaaatcctcaac 1052814
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 1091 ccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgtcg 1150
|||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||
Sbjct: 1052490 ccctttcacaaaatggctcctggaataaagacggtagttttcagcaaatttgatatgtcg 1052431
Query: 1151 tacc 1154
||||
Sbjct: 1052430 tacc 1052427
Score = 63.9 bits (32), Expect = 2e-007
Identities = 134/168 (79%)
Strand = Plus / Minus
Query: 485 tccccacccagttggcacaaatgctagaatggaagcaaaaacatctctcacactgagttt 544
|||||| ||||||||||||||||||| |||| |||||| |||||| | ||||| || |
Sbjct: 1054146 tccccagccagttggcacaaatgctaagatggcagcaaacacatctttgacactaaggct 1054087
Query: 545 cgtaaacaaaattgccaggaccagagcagccaaaaccatcaataacgctacacttttgac 604
||||||| || ||||| |||| | ||||||||||||| || ||| | |||||||
Sbjct: 1054086 tgtaaacacaactgccacaaccaagcccgccaaaaccatcagtagcgcaatgcttttgat 1054027
Query: 605 caaacgcaggaacaattggaaatgtaccatggccttggggtttaaacc 652
| || |||||||| |||||||| ||||| |||||||| || |||||
Sbjct: 1054026 aagtcggaggaacaactggaaatgcaccatcgccttgggattcaaacc 1053979
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 672 aaaaggccaccaagcacagcccaagaaatccaata 706
||||||||||||||||||||||| || ||||||||
Sbjct: 1053869 aaaaggccaccaagcacagcccatgatatccaata 1053835
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 163 bits (82), Expect = 3e-037
Identities = 139/158 (87%)
Strand = Plus / Minus
Query: 932 cttctgccattcaaatccagatgggttaaataaatagggagcaaaaagccaagacaatgc 991
|||||||||||||||||||||||| || |||| || ||||||||||||||||| | |||
Sbjct: 1052726 cttctgccattcaaatccagatggattgaatatgtatggagcaaaaagccaagaaactgc 1052667
Query: 992 cataatccaactgcttatagagagtaaaatatagccaactgctccaccattgttaaaccc 1051
||||| ||| || ||||| || || ||||| |||||||||||||||||||||||||| ||
Sbjct: 1052666 cataaaccagctacttatggaaagcaaaatgtagccaactgctccaccattgttaaaacc 1052607
Query: 1052 atacgctaggaagatcaccaacaaaagtgcaacctcca 1089
|||||||| |||||||| |||||||| ||||||||||
Sbjct: 1052606 atacgctaaaaagatcactaacaaaagagcaacctcca 1052569
Score = 151 bits (76), Expect = 1e-033
Identities = 184/220 (83%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 1055037 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 1054978
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 1054977 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 1054918
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagctagggcacgaacagtt 428
|| | ||||||| ||| || | |||||||| || ||||||||||| | || || |||
Sbjct: 1054917 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagctagagagcgcactgtt 1054858
Query: 429 ttccacaaacccaatttcttcacgacaggtttccatgcca 468
||||| | ||| | ||||||||| | ||||||||| ||||
Sbjct: 1054857 ttccatagacctagtttcttcacaataggtttccacgcca 1054818
Score = 141 bits (71), Expect = 1e-030
Identities = 92/99 (92%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
||||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 1052914 cagttcttcatcccaccaggcttcccaactttcttctcccttaaccccaataccacctcg 1052855
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctcaac 928
|||||||||||||| |||||||||||||||||||||||
Sbjct: 1052854 gtaaaacagccaattcgtccagtctctgaaatcctcaac 1052816
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 1091 ccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgtcg 1150
|||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||
Sbjct: 1052492 ccctttcacaaaatggctcctggaataaagacggtagttttcagcaaatttgatatgtcg 1052433
Query: 1151 tacc 1154
||||
Sbjct: 1052432 tacc 1052429
Score = 63.9 bits (32), Expect = 2e-007
Identities = 134/168 (79%)
Strand = Plus / Minus
Query: 485 tccccacccagttggcacaaatgctagaatggaagcaaaaacatctctcacactgagttt 544
|||||| ||||||||||||||||||| |||| |||||| |||||| | ||||| || |
Sbjct: 1054148 tccccagccagttggcacaaatgctaagatggcagcaaacacatctttgacactaaggct 1054089
Query: 545 cgtaaacaaaattgccaggaccagagcagccaaaaccatcaataacgctacacttttgac 604
||||||| || ||||| |||| | ||||||||||||| || ||| | |||||||
Sbjct: 1054088 tgtaaacacaactgccacaaccaagcccgccaaaaccatcagtagcgcaatgcttttgat 1054029
Query: 605 caaacgcaggaacaattggaaatgtaccatggccttggggtttaaacc 652
| || |||||||| |||||||| ||||| |||||||| || |||||
Sbjct: 1054028 aagtcggaggaacaactggaaatgcaccatcgccttgggattcaaacc 1053981
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 672 aaaaggccaccaagcacagcccaagaaatccaata 706
||||||||||||||||||||||| || ||||||||
Sbjct: 1053871 aaaaggccaccaagcacagcccatgatatccaata 1053837
>gb|AU184307.1|AU184307 AU184307 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1907, mRNA sequence
Length = 450
Score = 137 bits (69), Expect = 2e-029
Identities = 141/165 (85%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 165 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 106
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaaccacgagcaaatggctatg 368
|| || |||||||| |||||||| ||||||||||| |||||||| || | ||||||||
Sbjct: 105 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaaccaggaaaagatggctatc 46
Query: 369 ggtatgaaaatgaccatccccattccagcatcatagaggcgagct 413
|| | ||||||| ||| || | |||||||| || |||||||||
Sbjct: 45 gggacaaaaatgatcattcctgtgccagcatcgtacaggcgagct 1
>dbj|AK060258.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-E12, full
insert sequence
Length = 447
Score = 135 bits (68), Expect = 6e-029
Identities = 95/104 (91%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 126 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 67
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaacca 352
|| || |||||||| |||||||| ||||||||||| ||||||||
Sbjct: 66 ttaaatagaagtcgggtctggaaggtggatatgaaaggaaacca 23
>gb|AU173469.1|AU173469 AU173469 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3242, mRNA sequence
Length = 451
Score = 129 bits (65), Expect = 4e-027
Identities = 94/104 (90%)
Strand = Plus / Minus
Query: 249 gcatttggattgttgccagcaaggatcagagatatctccaaacctctgctgaacgcctgg 308
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct: 166 gcatttggattgttgccagcaagaatgagagagatctccaaacctctgctgaaagcctgg 107
Query: 309 ttgaacagaagtcgcgtctggaaagtggatatgaatggaaacca 352
|| || |||||||| |||||||| | ||||||||| ||||||||
Sbjct: 106 ttaaatagaagtcgggtctggaaggnggatatgaaaggaaacca 63
>gb|AQ859945.1|AQ859945 nbeb0013F14f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0013F14f, DNA sequence
Length = 646
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 1091 ccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaacttgatatgtcg 1150
|||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||
Sbjct: 520 ccctttcacaaaatggctcctggaataaagacggtagttttcagcaaatttgatatgtcg 461
Query: 1151 tacc 1154
||||
Sbjct: 460 tacc 457
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 58.0 bits (29), Expect = 1e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1098 acaaaatggcttcgagaataaatacggtagttctcagcaaacttg 1142
||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct: 156413 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttg 156457
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 927 acaatcttctgccattcaaatccaga 952
|||||||||||||| |||||||||||
Sbjct: 156242 acaatcttctgccactcaaatccaga 156267
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 58.0 bits (29), Expect = 1e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1098 acaaaatggcttcgagaataaatacggtagttctcagcaaacttg 1142
||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct: 156413 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttg 156457
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 927 acaatcttctgccattcaaatccaga 952
|||||||||||||| |||||||||||
Sbjct: 156242 acaatcttctgccactcaaatccaga 156267
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0069C14
Length = 150579
Score = 58.0 bits (29), Expect = 1e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1098 acaaaatggcttcgagaataaatacggtagttctcagcaaacttg 1142
||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct: 17615 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttg 17659
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 927 acaatcttctgccattcaaatccaga 952
|||||||||||||| |||||||||||
Sbjct: 17444 acaatcttctgccactcaaatccaga 17469
>gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014975, whole
genome shotgun sequence
Length = 9397
Score = 58.0 bits (29), Expect = 1e-005
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1098 acaaaatggcttcgagaataaatacggtagttctcagcaaacttg 1142
||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct: 4104 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttg 4060
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 927 acaatcttctgccattcaaatccaga 952
|||||||||||||| |||||||||||
Sbjct: 4275 acaatcttctgccactcaaatccaga 4250
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 58.0 bits (29), Expect = 1e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1098 acaaaatggcttcgagaataaatacggtagttctcagcaaacttg 1142
||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct: 11851071 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttg 11851115
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 927 acaatcttctgccattcaaatccaga 952
|||||||||||||| |||||||||||
Sbjct: 11850900 acaatcttctgccactcaaatccaga 11850925
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 58.0 bits (29), Expect = 1e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1098 acaaaatggcttcgagaataaatacggtagttctcagcaaacttg 1142
||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct: 29549808 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttg 29549852
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 927 acaatcttctgccattcaaatccaga 952
|||||||||||||| |||||||||||
Sbjct: 29549637 acaatcttctgccactcaaatccaga 29549662
Score = 44.1 bits (22), Expect = 0.17
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 840 tcccaccaagcttcccagctttcttctcctttaacaccaataccacctcgataaaacagc 899
|||||||||| ||||||||| | ||| || || ||||||| |||||| ||||| | |
Sbjct: 618144 tcccaccaagattcccagctgttttccccctttacaccaactccacctttataaagtaac 618203
Query: 900 caatttgtccagtc 913
||||||||||||||
Sbjct: 618204 caatttgtccagtc 618217
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 58.0 bits (29), Expect = 1e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1098 acaaaatggcttcgagaataaatacggtagttctcagcaaacttg 1142
||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct: 30519052 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttg 30519096
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 927 acaatcttctgccattcaaatccaga 952
|||||||||||||| |||||||||||
Sbjct: 30518881 acaatcttctgccactcaaatccaga 30518906
Score = 44.1 bits (22), Expect = 0.17
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 840 tcccaccaagcttcccagctttcttctcctttaacaccaataccacctcgataaaacagc 899
|||||||||| ||||||||| | ||| || || ||||||| |||||| ||||| | |
Sbjct: 725748 tcccaccaagattcccagctgttttccccctttacaccaactccacctttataaagtaac 725807
Query: 900 caatttgtccagtc 913
||||||||||||||
Sbjct: 725808 caatttgtccagtc 725821
>dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11953T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9058, genomic survey sequence
Length = 210
Score = 52.0 bits (26), Expect = 7e-004
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 1141 tgatatgtc-gtacctgcccgggcggccgctcga 1173
||||||||| ||||||||||||||||||||||||
Sbjct: 137 tgatatgtcagtacctgcccgggcggccgctcga 170
>gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of JA/BTH-treated rice leaf Oryza
sativa (japonica cultivar-group) cDNA clone JBI35, mRNA
sequence
Length = 350
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 25 gtacctgcccgggcggccgctcgaa 1
>dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F01, full
insert sequence
Length = 1923
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 1093 ctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||||| ||||| || ||||| || ||||| ||||||||||||||
Sbjct: 719 ctttcacaaagtggctccgggaatacatccggtaattctcagcaaactt 671
>gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001413, whole
genome shotgun sequence
Length = 32302
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1093 ctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||||| ||||| || ||||| || ||||| ||||||||||||||
Sbjct: 7946 ctttcacaaagtggctccgggaatacatccggtaattctcagcaaactt 7994
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1093 ctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||||| ||||| || ||||| || ||||| ||||||||||||||
Sbjct: 19379698 ctttcacaaagtggctccgggaatacatccggtaattctcagcaaactt 19379746
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 1093 ctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||||| ||||| || ||||| || ||||| ||||||||||||||
Sbjct: 4768 ctttcacaaagtggctccgggaatacatccggtaattctcagcaaactt 4720
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1093 ctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||||| ||||| || ||||| || ||||| ||||||||||||||
Sbjct: 2297930 ctttcacaaagtggctccgggaatacatccggtaattctcagcaaactt 2297978
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1619_F12
Length = 133028
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1093 ctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||||| ||||| || ||||| || ||||| ||||||||||||||
Sbjct: 120602 ctttcacaaagtggctccgggaatacatccggtaattctcagcaaactt 120650
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1029_F04
Length = 141834
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1093 ctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||||| ||||| || ||||| || ||||| ||||||||||||||
Sbjct: 28986 ctttcacaaagtggctccgggaatacatccggtaattctcagcaaactt 29034
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1093 ctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||||| ||||| || ||||| || ||||| ||||||||||||||
Sbjct: 2431361 ctttcacaaagtggctccgggaatacatccggtaattctcagcaaactt 2431409
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1093 ctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||||| ||||| || ||||| || ||||| ||||||||||||||
Sbjct: 19056484 ctttcacaaagtggctccgggaatacatccggtaattctcagcaaactt 19056532
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1093 ctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||||||| ||||| || ||||| || ||||| ||||||||||||||
Sbjct: 19300981 ctttcacaaagtggctccgggaatacatccggtaattctcagcaaactt 19301029
>dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00161T, 3'
flanking sequence of Tos17 insertion in rice strain
H0592, genomic survey sequence
Length = 309
Score = 48.1 bits (24), Expect = 0.011
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 279 gtacctgcccgggcggccgctcga 302
>dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09682T, 3'
flanking sequence of Tos17 insertion in rice strain
ND4557, genomic survey sequence
Length = 353
Score = 48.1 bits (24), Expect = 0.011
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 145 gtacctgcccgggcggccgctcga 168
>dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10610T, 3'
flanking sequence of Tos17 insertion in rice strain
ND6065, genomic survey sequence
Length = 329
Score = 48.1 bits (24), Expect = 0.011
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 269 gtacctgcccgggcggccgctcga 292
>dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11702T, 3'
flanking sequence of Tos17 insertion in rice strain
ND8064, genomic survey sequence
Length = 339
Score = 48.1 bits (24), Expect = 0.011
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 246 gtacctgcccgggcggccgctcga 269
>dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00181T, 3'
flanking sequence of Tos17 insertion in rice strain
H0615, genomic survey sequence
Length = 447
Score = 48.1 bits (24), Expect = 0.011
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 420 gtacctgcccgggcggccgctcga 443
>dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25630T, 3'
flanking sequence of Tos17 insertion in rice strain
NF8002, genomic survey sequence
Length = 485
Score = 48.1 bits (24), Expect = 0.011
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 207 gtacctgcccgggcggccgctcga 230
>dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25930T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9028, genomic survey sequence
Length = 385
Score = 48.1 bits (24), Expect = 0.011
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 315 gtacctgcccgggcggccgctcga 338
>dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28812T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1017, genomic survey sequence
Length = 253
Score = 48.1 bits (24), Expect = 0.011
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 201 gtacctgcccgggcggccgctcga 224
>dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA, clone:T16966T, 3'
flanking sequence of Tos17 insertion in rice strain
NE8022, genomic survey sequence
Length = 327
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1151 tacctgcccgggcggccgctcga 1173
|||||||||||||||||||||||
Sbjct: 291 tacctgcccgggcggccgctcga 313
>dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00072T, 3'
flanking sequence of Tos17 insertion in rice strain
H0268, genomic survey sequence
Length = 147
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1151 tacctgcccgggcggccgctcga 1173
|||||||||||||||||||||||
Sbjct: 116 tacctgcccgggcggccgctcga 138
>dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00091T, 3'
flanking sequence of Tos17 insertion in rice strain
H0363, genomic survey sequence
Length = 383
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1151 tacctgcccgggcggccgctcga 1173
|||||||||||||||||||||||
Sbjct: 361 tacctgcccgggcggccgctcga 383
>dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00163T, 3'
flanking sequence of Tos17 insertion in rice strain
H0596, genomic survey sequence
Length = 368
Score = 46.1 bits (23), Expect = 0.043
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1151 tacctgcccgggcggccgctcga 1173
|||||||||||||||||||||||
Sbjct: 339 tacctgcccgggcggccgctcga 361
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,842,434
Number of Sequences: 438736
Number of extensions: 1842434
Number of successful extensions: 8603
Number of sequences better than 0.5: 134
Number of HSP's better than 0.5 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8037
Number of HSP's gapped (non-prelim): 542
length of query: 1174
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1153
effective length of database: 2,791,206,460
effective search space: 3218261048380
effective search space used: 3218261048380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)