BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3023930.2.1
         (544 letters)

Database: Oryza_nucl_with_EST.fasta 
           438,736 sequences; 2,800,419,916 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AK064838.1|  Oryza sativa (japonica cultivar-group) cDNA...   105   2e-020
ref|XM_479599.1|  Oryza sativa (japonica cultivar-group),  mRNA   105   2e-020
dbj|AP003818.2|  Oryza sativa (japonica cultivar-group) geno...    86   2e-014
dbj|AP003813.4|  Oryza sativa (japonica cultivar-group) geno...    86   2e-014
gb|AACV01017045.1|  Oryza sativa (japonica cultivar-group) c...    86   2e-014
ref|NT_079899.2|  Oryza sativa (japonica cultivar-group)           86   2e-014
gb|CH401226.1|  Oryza sativa (japonica cultivar-group) chrom...    86   2e-014
gb|CM000144.1|  Oryza sativa (japonica cultivar-group) chrom...    86   2e-014
dbj|AP008213.1|  Oryza sativa (japonica cultivar-group) geno...    86   2e-014
emb|AL831795.4|CNS08CA8  Oryza sativa chromosome 12, . BAC O...    54   8e-005
ref|NT_079833.2|  Oryza sativa (japonica cultivar-group)           54   8e-005
gb|AACV01024418.1|  Oryza sativa (japonica cultivar-group) c...    54   8e-005
gb|CH401274.1|  Oryza sativa (japonica cultivar-group) chrom...    54   8e-005
gb|CM000149.1|  Oryza sativa (japonica cultivar-group) chrom...    54   8e-005
dbj|AP008218.1|  Oryza sativa (japonica cultivar-group) geno...    54   8e-005
gb|DP000011.1|  Oryza sativa (japonica cultivar-group) chrom...    54   8e-005
gb|AACV01021282.1|  Oryza sativa (japonica cultivar-group) c...    52   3e-004
ref|NT_080065.1|  Oryza sativa (japonica cultivar-group) chr...    52   3e-004
gb|CH401253.1|  Oryza sativa (japonica cultivar-group) chrom...    52   3e-004
gb|CM000147.1|  Oryza sativa (japonica cultivar-group) chrom...    52   3e-004
dbj|AP008216.1|  Oryza sativa (japonica cultivar-group) geno...    52   3e-004
gb|AC090441.3|  Oryza sativa (japonica cultivar-group) chrom...    52   3e-004
gb|AE016959.3|  Oryza sativa (japonica cultivar-group) chrom...    52   3e-004
gb|CA998416.1|CA998416  S345D_E12 Rice cold stress germinati...    50   0.001
gb|CB672451.1|CB672451  OSJNEe06H22.f OSJNEe Oryza sativa (j...    50   0.001
gb|CB672452.1|CB672452  OSJNEe06H22.r OSJNEe Oryza sativa (j...    50   0.001
gb|CB676813.1|CB676813  OSJNEe13E16.r OSJNEe Oryza sativa (j...    50   0.001
dbj|AK062471.1|  Oryza sativa (japonica cultivar-group) cDNA...    50   0.001
gb|AC119748.1|  Genomic sequence for Oryza sativa, Nipponbar...    50   0.001
gb|AACV01006501.1|  Oryza sativa (japonica cultivar-group) c...    50   0.001
ref|NT_107192.1|  Oryza sativa (japonica cultivar-group)           50   0.001
gb|CH401173.1|  Oryza sativa (japonica cultivar-group) chrom...    50   0.001
gb|CM000140.1|  Oryza sativa (japonica cultivar-group) chrom...    50   0.001
dbj|AP008209.1|  Oryza sativa (japonica cultivar-group) geno...    50   0.001
gb|DP000009.1|  Oryza sativa (japonica cultivar-group) chrom...    50   0.001
gb|CB650175.1|CB650175  OSJNEb14H19.f OSJNEb Oryza sativa (j...    48   0.005
ref|NT_107116.1|  Oryza sativa (japonica cultivar-group)           48   0.005
gb|AC132491.2|  Oryza sativa (japonica cultivar-group) chrom...    48   0.005
gb|AACV01009681.1|  Oryza sativa (japonica cultivar-group) c...    48   0.005
gb|AACV01012574.1|  Oryza sativa (japonica cultivar-group) c...    48   0.005
gb|AACV01022771.1|  Oryza sativa (japonica cultivar-group) c...    48   0.005
ref|NT_107197.1|  Oryza sativa (japonica cultivar-group)           48   0.005
ref|NT_107217.1|  Oryza sativa (japonica cultivar-group)           48   0.005
gb|CH401263.1|  Oryza sativa (japonica cultivar-group) chrom...    48   0.005
gb|CH401206.1|  Oryza sativa (japonica cultivar-group) chrom...    48   0.005
gb|CH401189.1|  Oryza sativa (japonica cultivar-group) chrom...    48   0.005
gb|CM000148.1|  Oryza sativa (japonica cultivar-group) chrom...    48   0.005
gb|CM000142.1|  Oryza sativa (japonica cultivar-group) chrom...    48   0.005
gb|CM000141.1|  Oryza sativa (japonica cultivar-group) chrom...    48   0.005
emb|AL731639.3|OSJN00288  Oryza sativa genomic DNA, chromoso...    48   0.005
dbj|AP008210.1|  Oryza sativa (japonica cultivar-group) geno...    48   0.005
dbj|AP008211.1|  Oryza sativa (japonica cultivar-group) geno...    48   0.005
dbj|AP008217.1|  Oryza sativa (japonica cultivar-group) geno...    48   0.005
gb|AC135498.3|  Oryza sativa (japonica cultivar-group) chrom...    48   0.005
gb|DP000010.1|  Oryza sativa (japonica cultivar-group) chrom...    48   0.005
dbj|AP004813.1|  Oryza sativa (japonica cultivar-group) chro...    44   0.077
emb|AL928750.3|CNS08CBN  Oryza sativa chromosome 12, . BAC O...    44   0.077
emb|AL713946.3|CNS07YPP  Oryza sativa chromosome 12, . BAC O...    44   0.077
dbj|AP004787.3|  Oryza sativa (japonica cultivar-group) geno...    44   0.077
dbj|AP004852.3|  Oryza sativa (japonica cultivar-group) geno...    44   0.077
emb|AL732639.5|CNS08C9E  Oryza sativa chromosome 12, . BAC O...    44   0.077
ref|NT_107149.1|  Oryza sativa (japonica cultivar-group)           44   0.077
ref|NT_107158.1|  Oryza sativa (japonica cultivar-group)           44   0.077
ref|NT_107235.1|  Oryza sativa (japonica cultivar-group)           44   0.077
dbj|AP006616.2|  Oryza sativa (japonica cultivar-group) geno...    44   0.077
dbj|AP005750.3|  Oryza sativa (japonica cultivar-group) geno...    44   0.077
gb|AACV01004259.1|  Oryza sativa (japonica cultivar-group) c...    44   0.077
gb|AACV01024142.1|  Oryza sativa (japonica cultivar-group) c...    44   0.077
gb|AACV01024832.1|  Oryza sativa (japonica cultivar-group) c...    44   0.077
ref|NT_107179.1|  Oryza sativa (japonica cultivar-group)           44   0.077
gb|CH401279.1|  Oryza sativa (japonica cultivar-group) chrom...    44   0.077
gb|CH401272.1|  Oryza sativa (japonica cultivar-group) chrom...    44   0.077
gb|CH401170.1|  Oryza sativa (japonica cultivar-group) chrom...    44   0.077
gb|CM000139.1|  Oryza sativa (japonica cultivar-group) chrom...    44   0.077
dbj|AP008208.1|  Oryza sativa (japonica cultivar-group) geno...    44   0.077
dbj|AP008212.1|  Oryza sativa (japonica cultivar-group) geno...    44   0.077
gb|AACV01005627.1|  Oryza sativa (japonica cultivar-group) c...    42   0.30 
gb|AACV01009666.1|  Oryza sativa (japonica cultivar-group) c...    42   0.30 
gb|AACV01018165.1|  Oryza sativa (japonica cultivar-group) c...    42   0.30 
ref|NT_107182.1|  Oryza sativa (japonica cultivar-group)           42   0.30 
dbj|AP004081.3|  Oryza sativa (japonica cultivar-group) geno...    42   0.30 
dbj|AP005303.3|  Oryza sativa (japonica cultivar-group) geno...    42   0.30 
dbj|AP004574.3|  Oryza sativa (japonica cultivar-group) geno...    42   0.30 
ref|NT_107239.1|  Oryza sativa (japonica cultivar-group)           42   0.30 
gb|CH401230.1|  Oryza sativa (japonica cultivar-group) chrom...    42   0.30 
gb|CM000145.1|  Oryza sativa (japonica cultivar-group) chrom...    42   0.30 
emb|AL606610.3|OSJN00045  Oryza sativa genomic DNA, chromoso...    42   0.30 
dbj|AP008214.1|  Oryza sativa (japonica cultivar-group) geno...    42   0.30 
>dbj|AK064838.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F23, full
            insert sequence
          Length = 2574

 Score =  105 bits (53), Expect = 2e-020
 Identities = 110/129 (85%)
 Strand = Plus / Plus

                                                                        
Query: 72   cattcaggtctccagctacgatcagctggttgcgtctgccatcacttggcagaacgctaa 131
            ||||||| | ||||||||| | ||||||||||| ||||||||||||||||||||    ||
Sbjct: 1883 cattcagatttccagctacaaccagctggttgcatctgccatcacttggcagaatagcaa 1942

                                                                        
Query: 132  agacaagagcacttacctcaggataaaggtggtgaatttcggcaaccaagctgtggatct 191
            |||||||||||||||||| |  |||||| | ||||| || ||||||||||||||| ||||
Sbjct: 1943 agacaagagcacttacctgaaaataaagctagtgaactttggcaaccaagctgtgaatct 2002

                     
Query: 192  gaacatatc 200
             | ||||||
Sbjct: 2003 cagcatatc 2011

 Score = 97.6 bits (49), Expect = 6e-018
 Identities = 142/173 (82%)
 Strand = Plus / Plus

                                                                        
Query: 238  tcgaagcagacggttctgacgtccagcagtccgcttgacgagaactccttccagcagcca 297
            |||||| |||| || || || |||||| | |||||||| |||||||| ||||||||||||
Sbjct: 2049 tcgaagaagaccgtgcttacttccagcgggccgcttgatgagaactcattccagcagcca 2108

                                                                        
Query: 298  gagaaggtggcgccagtgtcgagcccaatggcgaacgcggggcagcagatgggcgcttcc 357
             | |||||||||||||||||||||||  |||  ||||||    ||||||||||||  |  
Sbjct: 2109 caaaaggtggcgccagtgtcgagcccggtggacaacgcgaatgagcagatgggcgtgttg 2168

                                                                 
Query: 358  gtggggccgtactccctcacctcatttgacctgctgctggagccgagcaagca 410
            ||||  || ||||||||||| || || |||||||||||| | |||||||||||
Sbjct: 2169 gtggatccatactccctcacgtcgttcgacctgctgctgcaaccgagcaagca 2221
>ref|XM_479599.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1995

 Score =  105 bits (53), Expect = 2e-020
 Identities = 110/129 (85%)
 Strand = Plus / Plus

                                                                        
Query: 72   cattcaggtctccagctacgatcagctggttgcgtctgccatcacttggcagaacgctaa 131
            ||||||| | ||||||||| | ||||||||||| ||||||||||||||||||||    ||
Sbjct: 1644 cattcagatttccagctacaaccagctggttgcatctgccatcacttggcagaatagcaa 1703

                                                                        
Query: 132  agacaagagcacttacctcaggataaaggtggtgaatttcggcaaccaagctgtggatct 191
            |||||||||||||||||| |  |||||| | ||||| || ||||||||||||||| ||||
Sbjct: 1704 agacaagagcacttacctgaaaataaagctagtgaactttggcaaccaagctgtgaatct 1763

                     
Query: 192  gaacatatc 200
             | ||||||
Sbjct: 1764 cagcatatc 1772

 Score = 97.6 bits (49), Expect = 6e-018
 Identities = 142/173 (82%)
 Strand = Plus / Plus

                                                                        
Query: 238  tcgaagcagacggttctgacgtccagcagtccgcttgacgagaactccttccagcagcca 297
            |||||| |||| || || || |||||| | |||||||| |||||||| ||||||||||||
Sbjct: 1810 tcgaagaagaccgtgcttacttccagcgggccgcttgatgagaactcattccagcagcca 1869

                                                                        
Query: 298  gagaaggtggcgccagtgtcgagcccaatggcgaacgcggggcagcagatgggcgcttcc 357
             | |||||||||||||||||||||||  |||  ||||||    ||||||||||||  |  
Sbjct: 1870 caaaaggtggcgccagtgtcgagcccggtggacaacgcgaatgagcagatgggcgtgttg 1929

                                                                 
Query: 358  gtggggccgtactccctcacctcatttgacctgctgctggagccgagcaagca 410
            ||||  || ||||||||||| || || |||||||||||| | |||||||||||
Sbjct: 1930 gtggatccatactccctcacgtcgttcgacctgctgctgcaaccgagcaagca 1982
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1200_C08
          Length = 106214

 Score = 85.7 bits (43), Expect = 2e-014
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                         
Query: 72    cattcaggtctccagctacgatcagctggttgcgtctgccatcacttggcagaacgctaa 131
             ||||||| | ||||||||| | ||||||||||| ||||||||||||||||||||    ||
Sbjct: 81929 cattcagatttccagctacaaccagctggttgcatctgccatcacttggcagaatagcaa 81988

                                            
Query: 132   agacaagagcacttacctcaggataaaggtg 162
             |||||||||||||||||| |  |||||||||
Sbjct: 81989 agacaagagcacttacctgaaaataaaggtg 82019

 Score = 58.0 bits (29), Expect = 5e-006
 Identities = 89/109 (81%)
 Strand = Plus / Plus

                                                                         
Query: 302   aggtggcgccagtgtcgagcccaatggcgaacgcggggcagcagatgggcgcttccgtgg 361
             ||||||||||||||||||||||  |||  ||||||    ||||||||||||  |  ||||
Sbjct: 82373 aggtggcgccagtgtcgagcccggtggacaacgcgaatgagcagatgggcgtgttggtgg 82432

                                                              
Query: 362   ggccgtactccctcacctcatttgacctgctgctggagccgagcaagca 410
               || ||||||||||| || || |||||||||||| | |||||||||||
Sbjct: 82433 atccatactccctcacgtcgttcgacctgctgctgcaaccgagcaagca 82481

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                         
Query: 238   tcgaagcagacggttctgacgtccagcagtccgcttgacgagaactccttccagcagcca 297
             |||||| |||| || || || |||||| | |||||||| |||||||| ||||||||||||
Sbjct: 82204 tcgaagaagaccgtgcttacttccagcgggccgcttgatgagaactcattccagcagcca 82263
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1150_E04
          Length = 130973

 Score = 85.7 bits (43), Expect = 2e-014
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                         
Query: 72    cattcaggtctccagctacgatcagctggttgcgtctgccatcacttggcagaacgctaa 131
             ||||||| | ||||||||| | ||||||||||| ||||||||||||||||||||    ||
Sbjct: 69090 cattcagatttccagctacaaccagctggttgcatctgccatcacttggcagaatagcaa 69149

                                            
Query: 132   agacaagagcacttacctcaggataaaggtg 162
             |||||||||||||||||| |  |||||||||
Sbjct: 69150 agacaagagcacttacctgaaaataaaggtg 69180

 Score = 58.0 bits (29), Expect = 5e-006
 Identities = 89/109 (81%)
 Strand = Plus / Plus

                                                                         
Query: 302   aggtggcgccagtgtcgagcccaatggcgaacgcggggcagcagatgggcgcttccgtgg 361
             ||||||||||||||||||||||  |||  ||||||    ||||||||||||  |  ||||
Sbjct: 69534 aggtggcgccagtgtcgagcccggtggacaacgcgaatgagcagatgggcgtgttggtgg 69593

                                                              
Query: 362   ggccgtactccctcacctcatttgacctgctgctggagccgagcaagca 410
               || ||||||||||| || || |||||||||||| | |||||||||||
Sbjct: 69594 atccatactccctcacgtcgttcgacctgctgctgcaaccgagcaagca 69642

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                         
Query: 238   tcgaagcagacggttctgacgtccagcagtccgcttgacgagaactccttccagcagcca 297
             |||||| |||| || || || |||||| | |||||||| |||||||| ||||||||||||
Sbjct: 69365 tcgaagaagaccgtgcttacttccagcgggccgcttgatgagaactcattccagcagcca 69424
>gb|AACV01017045.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017045, whole
            genome shotgun sequence
          Length = 18063

 Score = 85.7 bits (43), Expect = 2e-014
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                        
Query: 72   cattcaggtctccagctacgatcagctggttgcgtctgccatcacttggcagaacgctaa 131
            ||||||| | ||||||||| | ||||||||||| ||||||||||||||||||||    ||
Sbjct: 2981 cattcagatttccagctacaaccagctggttgcatctgccatcacttggcagaatagcaa 2922

                                           
Query: 132  agacaagagcacttacctcaggataaaggtg 162
            |||||||||||||||||| |  |||||||||
Sbjct: 2921 agacaagagcacttacctgaaaataaaggtg 2891

 Score = 58.0 bits (29), Expect = 5e-006
 Identities = 89/109 (81%)
 Strand = Plus / Minus

                                                                        
Query: 302  aggtggcgccagtgtcgagcccaatggcgaacgcggggcagcagatgggcgcttccgtgg 361
            ||||||||||||||||||||||  |||  ||||||    ||||||||||||  |  ||||
Sbjct: 2537 aggtggcgccagtgtcgagcccggtggacaacgcgaatgagcagatgggcgtgttggtgg 2478

                                                             
Query: 362  ggccgtactccctcacctcatttgacctgctgctggagccgagcaagca 410
              || ||||||||||| || || |||||||||||| | |||||||||||
Sbjct: 2477 atccatactccctcacgtcgttcgacctgctgctgcaaccgagcaagca 2429

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                        
Query: 238  tcgaagcagacggttctgacgtccagcagtccgcttgacgagaactccttccagcagcca 297
            |||||| |||| || || || |||||| | |||||||| |||||||| ||||||||||||
Sbjct: 2706 tcgaagaagaccgtgcttacttccagcgggccgcttgatgagaactcattccagcagcca 2647
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
          Length = 17249721

 Score = 85.7 bits (43), Expect = 2e-014
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                            
Query: 72       cattcaggtctccagctacgatcagctggttgcgtctgccatcacttggcagaacgctaa 131
                ||||||| | ||||||||| | ||||||||||| ||||||||||||||||||||    ||
Sbjct: 16746977 cattcagatttccagctacaaccagctggttgcatctgccatcacttggcagaatagcaa 16747036

                                               
Query: 132      agacaagagcacttacctcaggataaaggtg 162
                |||||||||||||||||| |  |||||||||
Sbjct: 16747037 agacaagagcacttacctgaaaataaaggtg 16747067

 Score = 58.0 bits (29), Expect = 5e-006
 Identities = 89/109 (81%)
 Strand = Plus / Plus

                                                                            
Query: 302      aggtggcgccagtgtcgagcccaatggcgaacgcggggcagcagatgggcgcttccgtgg 361
                ||||||||||||||||||||||  |||  ||||||    ||||||||||||  |  ||||
Sbjct: 16747421 aggtggcgccagtgtcgagcccggtggacaacgcgaatgagcagatgggcgtgttggtgg 16747480

                                                                 
Query: 362      ggccgtactccctcacctcatttgacctgctgctggagccgagcaagca 410
                  || ||||||||||| || || |||||||||||| | |||||||||||
Sbjct: 16747481 atccatactccctcacgtcgttcgacctgctgctgcaaccgagcaagca 16747529

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                            
Query: 238      tcgaagcagacggttctgacgtccagcagtccgcttgacgagaactccttccagcagcca 297
                |||||| |||| || || || |||||| | |||||||| |||||||| ||||||||||||
Sbjct: 16747252 tcgaagaagaccgtgcttacttccagcgggccgcttgatgagaactcattccagcagcca 16747311
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
                scaffold, whole genome shotgun sequence
          Length = 15204090

 Score = 85.7 bits (43), Expect = 2e-014
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                            
Query: 72       cattcaggtctccagctacgatcagctggttgcgtctgccatcacttggcagaacgctaa 131
                ||||||| | ||||||||| | ||||||||||| ||||||||||||||||||||    ||
Sbjct: 14732397 cattcagatttccagctacaaccagctggttgcatctgccatcacttggcagaatagcaa 14732456

                                               
Query: 132      agacaagagcacttacctcaggataaaggtg 162
                |||||||||||||||||| |  |||||||||
Sbjct: 14732457 agacaagagcacttacctgaaaataaaggtg 14732487

 Score = 58.0 bits (29), Expect = 5e-006
 Identities = 89/109 (81%)
 Strand = Plus / Plus

                                                                            
Query: 302      aggtggcgccagtgtcgagcccaatggcgaacgcggggcagcagatgggcgcttccgtgg 361
                ||||||||||||||||||||||  |||  ||||||    ||||||||||||  |  ||||
Sbjct: 14732841 aggtggcgccagtgtcgagcccggtggacaacgcgaatgagcagatgggcgtgttggtgg 14732900

                                                                 
Query: 362      ggccgtactccctcacctcatttgacctgctgctggagccgagcaagca 410
                  || ||||||||||| || || |||||||||||| | |||||||||||
Sbjct: 14732901 atccatactccctcacgtcgttcgacctgctgctgcaaccgagcaagca 14732949

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                            
Query: 238      tcgaagcagacggttctgacgtccagcagtccgcttgacgagaactccttccagcagcca 297
                |||||| |||| || || || |||||| | |||||||| |||||||| ||||||||||||
Sbjct: 14732672 tcgaagaagaccgtgcttacttccagcgggccgcttgatgagaactcattccagcagcca 14732731
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
                sequence
          Length = 28626509

 Score = 85.7 bits (43), Expect = 2e-014
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                            
Query: 72       cattcaggtctccagctacgatcagctggttgcgtctgccatcacttggcagaacgctaa 131
                ||||||| | ||||||||| | ||||||||||| ||||||||||||||||||||    ||
Sbjct: 28131836 cattcagatttccagctacaaccagctggttgcatctgccatcacttggcagaatagcaa 28131895

                                               
Query: 132      agacaagagcacttacctcaggataaaggtg 162
                |||||||||||||||||| |  |||||||||
Sbjct: 28131896 agacaagagcacttacctgaaaataaaggtg 28131926

 Score = 58.0 bits (29), Expect = 5e-006
 Identities = 89/109 (81%)
 Strand = Plus / Plus

                                                                            
Query: 302      aggtggcgccagtgtcgagcccaatggcgaacgcggggcagcagatgggcgcttccgtgg 361
                ||||||||||||||||||||||  |||  ||||||    ||||||||||||  |  ||||
Sbjct: 28132280 aggtggcgccagtgtcgagcccggtggacaacgcgaatgagcagatgggcgtgttggtgg 28132339

                                                                 
Query: 362      ggccgtactccctcacctcatttgacctgctgctggagccgagcaagca 410
                  || ||||||||||| || || |||||||||||| | |||||||||||
Sbjct: 28132340 atccatactccctcacgtcgttcgacctgctgctgcaaccgagcaagca 28132388

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                            
Query: 238      tcgaagcagacggttctgacgtccagcagtccgcttgacgagaactccttccagcagcca 297
                |||||| |||| || || || |||||| | |||||||| |||||||| ||||||||||||
Sbjct: 28132111 tcgaagaagaccgtgcttacttccagcgggccgcttgatgagaactcattccagcagcca 28132170
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 85.7 bits (43), Expect = 2e-014
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                            
Query: 72       cattcaggtctccagctacgatcagctggttgcgtctgccatcacttggcagaacgctaa 131
                ||||||| | ||||||||| | ||||||||||| ||||||||||||||||||||    ||
Sbjct: 29133972 cattcagatttccagctacaaccagctggttgcatctgccatcacttggcagaatagcaa 29134031

                                               
Query: 132      agacaagagcacttacctcaggataaaggtg 162
                |||||||||||||||||| |  |||||||||
Sbjct: 29134032 agacaagagcacttacctgaaaataaaggtg 29134062

 Score = 58.0 bits (29), Expect = 5e-006
 Identities = 89/109 (81%)
 Strand = Plus / Plus

                                                                            
Query: 302      aggtggcgccagtgtcgagcccaatggcgaacgcggggcagcagatgggcgcttccgtgg 361
                ||||||||||||||||||||||  |||  ||||||    ||||||||||||  |  ||||
Sbjct: 29134416 aggtggcgccagtgtcgagcccggtggacaacgcgaatgagcagatgggcgtgttggtgg 29134475

                                                                 
Query: 362      ggccgtactccctcacctcatttgacctgctgctggagccgagcaagca 410
                  || ||||||||||| || || |||||||||||| | |||||||||||
Sbjct: 29134476 atccatactccctcacgtcgttcgacctgctgctgcaaccgagcaagca 29134524

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                            
Query: 238      tcgaagcagacggttctgacgtccagcagtccgcttgacgagaactccttccagcagcca 297
                |||||| |||| || || || |||||| | |||||||| |||||||| ||||||||||||
Sbjct: 29134247 tcgaagaagaccgtgcttacttccagcgggccgcttgatgagaactcattccagcagcca 29134306
>emb|AL831795.4|CNS08CA8 Oryza sativa chromosome 12, . BAC OSJNBb0085N21 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135105

 Score = 54.0 bits (27), Expect = 8e-005
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 515   agttcaacctaaaagcttaagctgata 541
             |||||||||||||||||||||||||||
Sbjct: 55809 agttcaacctaaaagcttaagctgata 55783
>ref|NT_079833.2| Oryza sativa (japonica cultivar-group)
          Length = 3813697

 Score = 54.0 bits (27), Expect = 8e-005
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                          
Query: 515     agttcaacctaaaagcttaagctgata 541
               |||||||||||||||||||||||||||
Sbjct: 2843857 agttcaacctaaaagcttaagctgata 2843831
>gb|AACV01024418.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024418, whole
            genome shotgun sequence
          Length = 24065

 Score = 54.0 bits (27), Expect = 8e-005
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 515  agttcaacctaaaagcttaagctgata 541
            |||||||||||||||||||||||||||
Sbjct: 9026 agttcaacctaaaagcttaagctgata 9000
>gb|CH401274.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000111
              genomic scaffold, whole genome shotgun sequence
          Length = 3984395

 Score = 54.0 bits (27), Expect = 8e-005
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                         
Query: 515    agttcaacctaaaagcttaagctgata 541
              |||||||||||||||||||||||||||
Sbjct: 358211 agttcaacctaaaagcttaagctgata 358185
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
               sequence
          Length = 23730396

 Score = 54.0 bits (27), Expect = 8e-005
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                          
Query: 515     agttcaacctaaaagcttaagctgata 541
               |||||||||||||||||||||||||||
Sbjct: 8406775 agttcaacctaaaagcttaagctgata 8406749

 Score = 44.1 bits (22), Expect = 0.077
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 515      agttcaacctaaaagcttaagctgat 540
                ||||||||| ||||||||||||||||
Sbjct: 13965953 agttcaacccaaaagcttaagctgat 13965928

 Score = 44.1 bits (22), Expect = 0.077
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 515     agttcaacctaaaagcttaagctgat 540
               ||||||||| ||||||||||||||||
Sbjct: 4638457 agttcaacccaaaagcttaagctgat 4638482
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 54.0 bits (27), Expect = 8e-005
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                           
Query: 515      agttcaacctaaaagcttaagctgata 541
                |||||||||||||||||||||||||||
Sbjct: 10690913 agttcaacctaaaagcttaagctgata 10690887

 Score = 44.1 bits (22), Expect = 0.077
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 515      agttcaacctaaaagcttaagctgat 540
                ||||||||| ||||||||||||||||
Sbjct: 16913964 agttcaacccaaaagcttaagctgat 16913939

 Score = 44.1 bits (22), Expect = 0.077
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 515     agttcaacctaaaagcttaagctgat 540
               ||||||||| ||||||||||||||||
Sbjct: 4713264 agttcaacccaaaagcttaagctgat 4713289
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 54.0 bits (27), Expect = 8e-005
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                           
Query: 515      agttcaacctaaaagcttaagctgata 541
                |||||||||||||||||||||||||||
Sbjct: 10690612 agttcaacctaaaagcttaagctgata 10690586

 Score = 44.1 bits (22), Expect = 0.077
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 515      agttcaacctaaaagcttaagctgat 540
                ||||||||| ||||||||||||||||
Sbjct: 16867197 agttcaacccaaaagcttaagctgat 16867172

 Score = 44.1 bits (22), Expect = 0.077
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 515     agttcaacctaaaagcttaagctgat 540
               ||||||||| ||||||||||||||||
Sbjct: 4713245 agttcaacccaaaagcttaagctgat 4713270
>gb|AACV01021282.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021282, whole
             genome shotgun sequence
          Length = 19921

 Score = 52.0 bits (26), Expect = 3e-004
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 515   agttcaacctaaaagcttaagctgat 540
             ||||||||||||||||||||||||||
Sbjct: 10070 agttcaacctaaaagcttaagctgat 10095
>ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chromosome 10
          Length = 2206062

 Score = 52.0 bits (26), Expect = 3e-004
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 515    agttcaacctaaaagcttaagctgat 540
              ||||||||||||||||||||||||||
Sbjct: 369875 agttcaacctaaaagcttaagctgat 369850
>gb|CH401253.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000090
              genomic scaffold, whole genome shotgun sequence
          Length = 2475376

 Score = 52.0 bits (26), Expect = 3e-004
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 515    agttcaacctaaaagcttaagctgat 540
              ||||||||||||||||||||||||||
Sbjct: 616774 agttcaacctaaaagcttaagctgat 616749
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
               sequence
          Length = 21480893

 Score = 52.0 bits (26), Expect = 3e-004
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                         
Query: 515     agttcaacctaaaagcttaagctgat 540
               ||||||||||||||||||||||||||
Sbjct: 9007092 agttcaacctaaaagcttaagctgat 9007067
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 52.0 bits (26), Expect = 3e-004
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                         
Query: 515     agttcaacctaaaagcttaagctgat 540
               ||||||||||||||||||||||||||
Sbjct: 9736391 agttcaacctaaaagcttaagctgat 9736366
>gb|AC090441.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0052C09, complete sequence
          Length = 139468

 Score = 52.0 bits (26), Expect = 3e-004
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 515   agttcaacctaaaagcttaagctgat 540
             ||||||||||||||||||||||||||
Sbjct: 88916 agttcaacctaaaagcttaagctgat 88891
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 52.0 bits (26), Expect = 3e-004
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                         
Query: 515     agttcaacctaaaagcttaagctgat 540
               ||||||||||||||||||||||||||
Sbjct: 9742430 agttcaacctaaaagcttaagctgat 9742405
>gb|CA998416.1|CA998416 S345D_E12 Rice cold stress germination cDNA library Oryza sativa
           (japonica cultivar-group) cDNA 5', mRNA sequence
          Length = 691

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 1   tatgggtgtcccaactattggatgctacactttttcaagga 41
           ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 421 tatggatgtccaaactactggatgctacacttcttcaagga 461
>gb|CB672451.1|CB672451 OSJNEe06H22.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
           clone OSJNEe06H22 5', mRNA sequence
          Length = 765

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 1   tatgggtgtcccaactattggatgctacactttttcaagga 41
           ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 653 tatggatgtccaaactactggatgctacacttcttcaagga 693
>gb|CB672452.1|CB672452 OSJNEe06H22.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
           clone OSJNEe06H22 3', mRNA sequence
          Length = 890

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 1   tatgggtgtcccaactattggatgctacactttttcaagga 41
           ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 732 tatggatgtccaaactactggatgctacacttcttcaagga 692
>gb|CB676813.1|CB676813 OSJNEe13E16.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
           clone OSJNEe13E16 3', mRNA sequence
          Length = 706

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 1   tatgggtgtcccaactattggatgctacactttttcaagga 41
           ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 583 tatggatgtccaaactactggatgctacacttcttcaagga 543
>dbj|AK062471.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-E11, full
           insert sequence
          Length = 1212

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 1   tatgggtgtcccaactattggatgctacactttttcaagga 41
           ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 372 tatggatgtccaaactactggatgctacacttcttcaagga 412
>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042L15, from chromosome 3, complete sequence
          Length = 172475

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 1     tatgggtgtcccaactattggatgctacactttttcaagga 41
             ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 74523 tatggatgtccaaactactggatgctacacttcttcaagga 74483
>gb|AACV01006501.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006501, whole
            genome shotgun sequence
          Length = 22973

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 1    tatgggtgtcccaactattggatgctacactttttcaagga 41
            ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 1954 tatggatgtccaaactactggatgctacacttcttcaagga 1914
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
          Length = 4781381

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                        
Query: 1       tatgggtgtcccaactattggatgctacactttttcaagga 41
               ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 2866211 tatggatgtccaaactactggatgctacacttcttcaagga 2866171
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
                scaffold, whole genome shotgun sequence
          Length = 13858245

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 1        tatgggtgtcccaactattggatgctacactttttcaagga 41
                ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 11647178 tatggatgtccaaactactggatgctacacttcttcaagga 11647138
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
                sequence
          Length = 37803064

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 1        tatgggtgtcccaactattggatgctacactttttcaagga 41
                ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 11839540 tatggatgtccaaactactggatgctacacttcttcaagga 11839500
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 1        tatgggtgtcccaactattggatgctacactttttcaagga 41
                ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 11520714 tatggatgtccaaactactggatgctacacttcttcaagga 11520674
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 1        tatgggtgtcccaactattggatgctacactttttcaagga 41
                ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct: 11523951 tatggatgtccaaactactggatgctacacttcttcaagga 11523911
>gb|CB650175.1|CB650175 OSJNEb14H19.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
           clone OSJNEb14H19 5', mRNA sequence
          Length = 881

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 1   tatgggtgtcccaactattggatgctacactttttcaagg 40
           ||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 727 tatggatgtccaaactactggatgctacacttcttcaagg 766
>ref|NT_107116.1| Oryza sativa (japonica cultivar-group)
          Length = 906209

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 515    agttcaacctaaaagcttaagctgatag 542
              ||||||||| ||||||||||||||||||
Sbjct: 293188 agttcaacccaaaagcttaagctgatag 293161
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04,
             complete sequence
          Length = 169073

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 515   agttcaacctaaaagcttaagctgatag 542
             |||||||||||||||| |||||||||||
Sbjct: 76145 agttcaacctaaaagcctaagctgatag 76118
>gb|AACV01009681.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009681, whole
             genome shotgun sequence
          Length = 29302

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 515   agttcaacctaaaagcttaagctgatag 542
             ||||||||| ||||||||||||||||||
Sbjct: 14273 agttcaacccaaaagcttaagctgatag 14246
>gb|AACV01012574.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012574, whole
            genome shotgun sequence
          Length = 24616

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 515  agttcaacctaaaagcttaagctgatag 542
            |||||||||||||||| |||||||||||
Sbjct: 4899 agttcaacctaaaagcctaagctgatag 4872
>gb|AACV01022771.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022771, whole
            genome shotgun sequence
          Length = 19514

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 515  agttcaacctaaaagcttaagctgatag 542
            ||||||||| ||||||||||||||||||
Sbjct: 5314 agttcaacccaaaagcttaagctgatag 5341
>ref|NT_107197.1| Oryza sativa (japonica cultivar-group)
          Length = 297308

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 515    agttcaacctaaaagcttaagctgatag 542
              ||||||||| ||||||||||||||||||
Sbjct: 269745 agttcaacccaaaagcttaagctgatag 269718

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 508   atcaacaagttcaacctaaaagcttaagctgat 540
             |||||| ||||||||||||||| |||| |||||
Sbjct: 54088 atcaaccagttcaacctaaaagtttaaactgat 54056
>ref|NT_107217.1| Oryza sativa (japonica cultivar-group)
          Length = 898765

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 515    agttcaacctaaaagcttaagctgatag 542
              |||||||||||||||| |||||||||||
Sbjct: 628577 agttcaacctaaaagcctaagctgatag 628550
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100
              genomic scaffold, whole genome shotgun sequence
          Length = 6309838

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 515    agttcaacctaaaagcttaagctgatag 542
              ||||||||| ||||||||||||||||||
Sbjct: 317894 agttcaacccaaaagcttaagctgatag 317867
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
               scaffold, whole genome shotgun sequence
          Length = 11965857

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 515     agttcaacctaaaagcttaagctgatag 542
               |||||||||||||||| |||||||||||
Sbjct: 7993005 agttcaacctaaaagcctaagctgatag 7992978
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
               scaffold, whole genome shotgun sequence
          Length = 11796637

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 515     agttcaacctaaaagcttaagctgatag 542
               ||||||||| ||||||||||||||||||
Sbjct: 9863625 agttcaacccaaaagcttaagctgatag 9863598

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 508     atcaacaagttcaacctaaaagcttaagctgat 540
               |||||| ||||||||||||||| |||| |||||
Sbjct: 9615268 atcaaccagttcaacctaaaagtttaaactgat 9615236
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
               sequence
          Length = 22593549

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 515     agttcaacctaaaagcttaagctgatag 542
               ||||||||| ||||||||||||||||||
Sbjct: 8172938 agttcaacccaaaagcttaagctgatag 8172911
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
                sequence
          Length = 29309110

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 515      agttcaacctaaaagcttaagctgatag 542
                |||||||||||||||| |||||||||||
Sbjct: 25293318 agttcaacctaaaagcctaagctgatag 25293291
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
                sequence
          Length = 32311234

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 515      agttcaacctaaaagcttaagctgatag 542
                ||||||||| ||||||||||||||||||
Sbjct: 17210987 agttcaacccaaaagcttaagctgatag 17210960

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 508      atcaacaagttcaacctaaaagcttaagctgat 540
                |||||| ||||||||||||||| |||| |||||
Sbjct: 16962630 atcaaccagttcaacctaaaagtttaaactgat 16962598
>emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02,
             complete sequence
          Length = 112404

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 515   agttcaacctaaaagcttaagctgatag 542
             ||||||||| ||||||||||||||||||
Sbjct: 84841 agttcaacccaaaagcttaagctgatag 84814
  Database: Oryza_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:41 PM
  Number of letters in database: 2,800,419,916
  Number of sequences in database:  438,736
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 668,809
Number of Sequences: 438736
Number of extensions: 668809
Number of successful extensions: 12928
Number of sequences better than  0.5: 88
Number of HSP's better than  0.5 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11708
Number of HSP's gapped (non-prelim): 1211
length of query: 544
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 523
effective length of database: 2,791,206,460
effective search space: 1459800978580
effective search space used: 1459800978580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)