BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023309.2.1
(1096 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_185268.1| Oryza sativa (japonica cultivar-group), p... 547 e-153
dbj|AK102716.1| Oryza sativa (japonica cultivar-group) cDNA... 539 e-150
gb|CB664196.1|CB664196 OSJNEd09M14.f OSJNEd Oryza sativa (j... 502 e-139
gb|CF291422.1|CF291422 14ROOT--01-N11.b1 Rice root plasmid ... 456 e-125
gb|CB664197.1|CB664197 OSJNEd09M14.r OSJNEd Oryza sativa (j... 327 7e-087
gb|CF281273.1|CF281273 14ETL--08-E06.b1 Rice etiolated leaf... 321 5e-085
gb|D46932.1|D46932 RICS11902A Rice green shoot Oryza sativa... 268 6e-069
gb|CF281274.1|CF281274 14ETL--08-E06.g1 Rice etiolated leaf... 196 2e-047
gb|AC093492.3| Oryza sativa (japonica cultivar-group) chrom... 172 3e-040
gb|AC087551.3| Oryza sativa (japonica cultivar-group) chrom... 172 3e-040
gb|AACV01010914.1| Oryza sativa (japonica cultivar-group) c... 172 3e-040
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 172 3e-040
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 172 3e-040
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 172 3e-040
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 172 3e-040
gb|D47053.1|D47053 RICS12137A Rice green shoot Oryza sativa... 168 4e-039
gb|AQ867693.1|AQ867693 nbeb0034I07f CUGI Rice BAC Library (... 92 8e-016
gb|D24080.1|D24080 RICR1158A Rice root Oryza sativa (japoni... 62 7e-007
gb|AU029267.1|AU029267 AU029267 Rice panicle shorter than 3... 62 7e-007
gb|AU031732.1|AU031732 AU031732 Rice root Oryza sativa (jap... 62 7e-007
gb|CB670209.1|CB670209 OSJNEe03C22.f OSJNEe Oryza sativa (j... 62 7e-007
gb|CB670210.1|CB670210 OSJNEe03C22.r OSJNEe Oryza sativa (j... 62 7e-007
gb|CB682395.1|CB682395 OSJNEf09K22.f OSJNEf Oryza sativa (j... 62 7e-007
gb|CB682396.1|CB682396 OSJNEf09K22.r OSJNEf Oryza sativa (j... 62 7e-007
gb|CF279322.1|CF279322 14ETL--05-J08.b1 Rice etiolated leaf... 62 7e-007
gb|CF279492.1|CF279492 14ETL--05-M24.g1 Rice etiolated leaf... 62 7e-007
gb|CF293901.1|CF293901 30DGS--03-D23.b1 Rice leaf plasmid c... 62 7e-007
dbj|AK103337.1| Oryza sativa (japonica cultivar-group) cDNA... 62 7e-007
gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbar... 62 7e-007
gb|AC137931.3| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
gb|AACV01006422.1| Oryza sativa (japonica cultivar-group) c... 62 7e-007
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 62 7e-007
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 62 7e-007
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
gb|AU057633.1|AU057633 AU057633 Oryza sativa mature leaf Ni... 54 2e-004
gb|CF294951.1|CF294951 30DGS--04-K19.g1 Rice leaf plasmid c... 54 2e-004
gb|D38946.1|D38946 RICC2827A Rice callus Oryza sativa (japo... 44 0.16
>ref|NM_185268.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 762
Score = 547 bits (276), Expect = e-153
Identities = 601/708 (84%), Gaps = 6/708 (0%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcgaagaacttaag 181
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcgaggaacttaag 120
Query: 182 aagtccctaacagccgttttttcccagtttgggaaaattcttgatgtgcttgctttcaag 241
|| || || || ||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 121 aaatcgctccgcgctgttttctcccagtttgggaagattcttgatgttctcgctttcaag 180
Query: 242 actttgaagcataaaggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgag 301
||||||||||||||||| ||||| |||||||| || |||||||| || ||||| ||||||
Sbjct: 181 actttgaagcataaaggccaagcctgggttgtgtttgaagatgttgcttcagcaactgag 240
Query: 302 gctctgaagaggatgcagggctttcccttctatgacaaaactatgagaattcaatatgcc 361
||| ||||||| ||||| | ||| |||||| || | ||| |||||||||| |||||||||
Sbjct: 241 gctttgaagagcatgcaagacttccccttccataataaacctatgagaatccaatatgcc 300
Query: 362 aagaccaaatcagatattatagcaaaggctgatggcacctttgtacctcgagaaagaaga 421
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 301 aagaccaaatcggatattatagcaaaagctgatggcacctttgtacctcgagaaagaagg 360
Query: 422 aagaggactgatgaaaaatctgaaaagaagcagaagcgcgagcatcaccatgatgctggt 481
||||||| ||||| ||| ||||||||||||||||||| ||||| |||||||||| ||
Sbjct: 361 aagaggaacgatgagaaacctgaaaagaagcagaagcgtgagcagcaccatgatg-tg-- 417
Query: 482 gctagtcaaattggcatgggtgtaactgcttaccctggtgtttatggggctccacagctc 541
|||||| ||||| | ||||| | ||||||||| ||||||||||| ||||| | ||||
Sbjct: 418 ---agtcaagttggcttaggtgtgaatgcttaccccggtgtttatggagctcctccgctc 474
Query: 542 acccagatacctatagcaggaggacaaagggtcatgatgccagagattatcgtaccaaac 601
| ||| ||||| | || || | ||| | |||||||||||| ||||| || ||||| ||
Sbjct: 475 tctcagctaccttttgctggcgcacagaaggtcatgatgccggagataattgtaccgaat 534
Query: 602 aacatcttgtttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctc 661
|||||| | || ||||||||| | ||||| |||||||| || |||||||| |||||||||
Sbjct: 535 aacatcctcttcgtccaaaacctcccacatgagacgacccctatgatgcttcagatgctc 594
Query: 662 ttctgccagtaccctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgct 721
||||| |||||||| || |||||||| || | ||| | || || |||||||||||||||
Sbjct: 595 ttctgtcagtacccagggttcaaggaagtcagaatggttgaagcaaagcctgggattgct 654
Query: 722 ttcgtggagtatggagacgagacccaggccactgctgccatgaacaaccttcaaagcttc 781
||||||||||| || |||||| ||||| || |||||||||||| | ||||| | |||
Sbjct: 655 ttcgtggagtacggcgacgaggggcaggctaccgctgccatgaaccatcttcaggggttc 714
Query: 782 aaaattacaaaagaaaaccagatggtcatcacatatgcgaagaagtaa 829
|||||||| ||||| ||||||||| | ||| | |||||||||||||||
Sbjct: 715 aaaattacgaaagataaccagatgcttatctcgtatgcgaagaagtaa 762
>dbj|AK102716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105D18, full
insert sequence
Length = 923
Score = 539 bits (272), Expect = e-150
Identities = 600/708 (84%), Gaps = 6/708 (0%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcgaagaacttaag 181
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 110 ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcgaggaacttaag 169
Query: 182 aagtccctaacagccgttttttcccagtttgggaaaattcttgatgtgcttgctttcaag 241
|| || || || ||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 170 aaatcgctccgcgctgttttctcccagtttgggaagattcttgatgttctcgctttcaag 229
Query: 242 actttgaagcataaaggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgag 301
||||||||||||||||| ||||| |||||||| || |||||||| || ||||| ||||||
Sbjct: 230 actttgaagcataaaggccaagcctgggttgtgtttgaagatgttgcttcagcaactgag 289
Query: 302 gctctgaagaggatgcagggctttcccttctatgacaaaactatgagaattcaatatgcc 361
||| ||||||| ||||| | ||| |||||| || | ||| |||||||||| |||||||||
Sbjct: 290 gctttgaagagcatgcaagacttccccttccataataaacctatgagaatccaatatgcc 349
Query: 362 aagaccaaatcagatattatagcaaaggctgatggcacctttgtacctcgagaaagaaga 421
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 350 aagaccaaatcggatattatagcaaaagctgatggcacctttgtacctcgagaaagaagg 409
Query: 422 aagaggactgatgaaaaatctgaaaagaagcagaagcgcgagcatcaccatgatgctggt 481
||||||| ||||| ||| ||| ||||||||||||||| ||||| |||||||||| ||
Sbjct: 410 aagaggaacgatgagaaacctggaaagaagcagaagcgtgagcagcaccatgatg-tg-- 466
Query: 482 gctagtcaaattggcatgggtgtaactgcttaccctggtgtttatggggctccacagctc 541
|||||| ||||| | ||||| | ||||||||| ||||||||||| ||||| | ||||
Sbjct: 467 ---agtcaagttggcttaggtgtgaatgcttaccccggtgtttatggagctcctccgctc 523
Query: 542 acccagatacctatagcaggaggacaaagggtcatgatgccagagattatcgtaccaaac 601
| ||| ||||| | || || | ||| | |||||||||||| ||||| || ||||| ||
Sbjct: 524 tctcagctaccttttgctggcgcacagaaggtcatgatgccggagataattgtaccgaat 583
Query: 602 aacatcttgtttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctc 661
|||||| | || ||||||||| | ||||| |||||||| || |||||||| |||||||||
Sbjct: 584 aacatcctcttcgtccaaaacctcccacatgagacgacccctatgatgcttcagatgctc 643
Query: 662 ttctgccagtaccctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgct 721
||||| |||||||| || |||||||| || | ||| | || || |||||||||||||||
Sbjct: 644 ttctgtcagtacccagggttcaaggaagtcagaatggttgaagcaaagcctgggattgct 703
Query: 722 ttcgtggagtatggagacgagacccaggccactgctgccatgaacaaccttcaaagcttc 781
||||||||||| || |||||| ||||| || |||||||||||| | ||||| | |||
Sbjct: 704 ttcgtggagtacggcgacgaggggcaggctaccgctgccatgaaccatcttcaggggttc 763
Query: 782 aaaattacaaaagaaaaccagatggtcatcacatatgcgaagaagtaa 829
|||||||| ||||| ||||||||| | ||| | |||||||||||||||
Sbjct: 764 aaaattacgaaagataaccagatgcttatctcgtatgcgaagaagtaa 811
>gb|CB664196.1|CB664196 OSJNEd09M14.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd09M14 5', mRNA sequence
Length = 697
Score = 502 bits (253), Expect = e-139
Identities = 548/645 (84%), Gaps = 6/645 (0%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcgaagaacttaag 181
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 55 ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcgaggaacttaag 114
Query: 182 aagtccctaacagccgttttttcccagtttgggaaaattcttgatgtgcttgctttcaag 241
|| || || || ||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 115 aaatcgctccgcgctgttttctcccagtttgggaagattcttgatgttctcgctttcaag 174
Query: 242 actttgaagcataaaggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgag 301
||||||||||||||||| ||||| |||||||| || |||||||| || ||||| ||||||
Sbjct: 175 actttgaagcataaaggccaagcctgggttgtgtttgaagatgttgcttcagcaactgag 234
Query: 302 gctctgaagaggatgcagggctttcccttctatgacaaaactatgagaattcaatatgcc 361
||| ||||||| ||||| | ||| |||||| || | ||| |||||||||| |||||||||
Sbjct: 235 gctttgaagagcatgcaagacttccccttccataataaacctatgagaatccaatatgcc 294
Query: 362 aagaccaaatcagatattatagcaaaggctgatggcacctttgtacctcgagaaagaaga 421
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 295 aagaccaaatcggatattatagcaaaagctgatggcacctttgtacctcgagaaagaagg 354
Query: 422 aagaggactgatgaaaaatctgaaaagaagcagaagcgcgagcatcaccatgatgctggt 481
||||||| ||||| ||| ||||||||||||||||||| ||||| |||||||||| ||
Sbjct: 355 aagaggaacgatgagaaacctgaaaagaagcagaagcgtgagcagcaccatgatg-tg-- 411
Query: 482 gctagtcaaattggcatgggtgtaactgcttaccctggtgtttatggggctccacagctc 541
|||||| ||||| | ||||| | ||||||||| ||||||||||| ||||| | ||||
Sbjct: 412 ---agtcaagttggcttaggtgtgaatgcttaccccggtgtttatggagctcctccgctc 468
Query: 542 acccagatacctatagcaggaggacaaagggtcatgatgccagagattatcgtaccaaac 601
| ||| ||||| | || || | ||| | |||||||||||| ||||| || ||||| ||
Sbjct: 469 tctcagctaccttttgctggcgcacagaaggtcatgatgccggagataattgtaccgaat 528
Query: 602 aacatcttgtttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctc 661
|||||| | || ||||||||| | ||||| |||||||| || |||||||| |||||||||
Sbjct: 529 aacatcctcttcgtccaaaacctcccacatgagacgacccctatgatgcttcagatgctc 588
Query: 662 ttctgccagtaccctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgct 721
||||| |||||||| || |||||||| || | ||| | || || ||||||| |||||||
Sbjct: 589 ttctgtcagtacccagggttcaaggaagtcagaatggttgaagcaaagcctgtgattgct 648
Query: 722 ttcgtggagtatggagacgagacccaggccactgctgccatgaac 766
||||||||||| || |||||| ||||| || ||||||||||||
Sbjct: 649 ttcgtggagtacggcgacgaggggcaggctaccgctgccatgaac 693
>gb|CF291422.1|CF291422 14ROOT--01-N11.b1 Rice root plasmid cDNA library (14ROOT) Oryza
sativa (japonica cultivar-group) cDNA clone
14ROOT--01-N11, mRNA sequence
Length = 658
Score = 456 bits (230), Expect = e-125
Identities = 474/554 (85%), Gaps = 6/554 (1%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcgaagaacttaag 181
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 108 ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcgaggaacttaag 167
Query: 182 aagtccctaacagccgttttttcccagtttgggaaaattcttgatgtgcttgctttcaag 241
|| || || || ||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 168 aaatcgctccgcgctgttttctcccagtttgggaagattcttgatgttctcgctttcaag 227
Query: 242 actttgaagcataaaggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgag 301
||||||||||||||||| ||||| |||||||| || |||||||| || ||||| ||||||
Sbjct: 228 actttgaagcataaaggccaagcctgggttgtgtttgaagatgttgcttcagcaactgag 287
Query: 302 gctctgaagaggatgcagggctttcccttctatgacaaaactatgagaattcaatatgcc 361
||| ||||||| ||||| | ||| |||||| || | ||| |||||||||| |||||||||
Sbjct: 288 gctttgaagagcatgcaagacttccccttccataataaacctatgagaatccaatatgcc 347
Query: 362 aagaccaaatcagatattatagcaaaggctgatggcacctttgtacctcgagaaagaaga 421
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 348 aagaccaaatcggatattatagcaaaagctgatggcacctttgtacctcgagaaagaagg 407
Query: 422 aagaggactgatgaaaaatctgaaaagaagcagaagcgcgagcatcaccatgatgctggt 481
||||||| ||||| ||| |||||||||| |||||||| ||||| |||||||||| ||
Sbjct: 408 aagaggaacgatgagaaacctgaaaagaaacagaagcgtgagcagcaccatgatg-tg-- 464
Query: 482 gctagtcaaattggcatgggtgtaactgcttaccctggtgtttatggggctccacagctc 541
|||||| ||||| | ||||| | ||||||||| ||||||||||| ||||| | ||||
Sbjct: 465 ---agtcaagttggcttaggtgtgaatgcttaccccggtgtttatggagctcctccgctc 521
Query: 542 acccagatacctatagcaggaggacaaagggtcatgatgccagagattatcgtaccaaac 601
| ||| ||||| | || || | ||| | |||||||||||| ||||| || ||||| ||
Sbjct: 522 tctcagctaccttttgctggcgcacagaaggtcatgatgccggagataattgtaccgaat 581
Query: 602 aacatcttgtttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctc 661
|||||| | || ||||||||| | ||||| |||||||| || |||||||| |||||||||
Sbjct: 582 aacatcctcttcgtccaaaacctcccacatgagacgacccctatgatgcttcagatgctc 641
Query: 662 ttctgccagtaccc 675
||||| ||||||||
Sbjct: 642 ttctgtcagtaccc 655
>gb|CB664197.1|CB664197 OSJNEd09M14.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd09M14 3', mRNA sequence
Length = 736
Score = 327 bits (165), Expect = 7e-087
Identities = 400/477 (83%), Gaps = 6/477 (1%)
Strand = Plus / Minus
Query: 353 caatatgccaagaccaaatcagatattatagcaaaggctgatggcacctttgtacctcga 412
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 732 caatatgccaagaccaaatcggatattatagcaaaagctgatggcacctttgtacctcga 673
Query: 413 gaaagaagaaagaggactgatgaaaaatctgaaaagaagcagaagcgcgagcatcaccat 472
|||||||| ||||||| ||||| ||| ||||||||||||||||||| ||||| ||||||
Sbjct: 672 gaaagaaggaagaggaacgatgagaaacctgaaaagaagcagaagcgtgagcagcaccat 613
Query: 473 gatgctggtgctagtcaaattggcatgggtgtaactgcttaccctggtgtttatggggct 532
|||| || |||||| ||||| | ||||| | ||||||||| ||||||||||| |||
Sbjct: 612 gatg----tg--agtcaagttggcttaggtgtgaatgcttaccccggtgtttatggagct 559
Query: 533 ccacagctcacccagatacctatagcaggaggacaaagggtcatgatgccagagattatc 592
|| | |||| | ||| ||||| | || || | ||| | |||||||||||| ||||| ||
Sbjct: 558 cctccgctctctcagctaccttttgctggcgcacagaaggtcatgatgccggagataatt 499
Query: 593 gtaccaaacaacatcttgtttgtccaaaacttgccacacgagacgacgcccatgatgctc 652
||||| || |||||| | || ||||||||| | ||||| |||||||| || ||||||||
Sbjct: 498 gtaccgaataacatcctcttcgtccaaaacctcccacatgagacgacccctatgatgctt 439
Query: 653 cagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcgaggcgaagcct 712
|||||||||||||| |||||||| || |||||||| || | ||| | || || ||||||
Sbjct: 438 cagatgctcttctgtcagtacccagggttcaaggaagtcagaatggttgaagcaaagcct 379
Query: 713 gggattgctttcgtggagtatggagacgagacccaggccactgctgccatgaacaacctt 772
|||||||||||||||||||| || |||||| ||||| || |||||||||||| | |||
Sbjct: 378 gggattgctttcgtggagtacggcgacgaggggcaggctaccgctgccatgaaccatctt 319
Query: 773 caaagcttcaaaattacaaaagaaaaccagatggtcatcacatatgcgaagaagtaa 829
|| | ||||||||||| ||||| ||||||||| | ||| | |||||||||||||||
Sbjct: 318 caggggttcaaaattacgaaagataaccagatgcttatctcgtatgcgaagaagtaa 262
>gb|CF281273.1|CF281273 14ETL--08-E06.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--08-E06, mRNA sequence
Length = 390
Score = 321 bits (162), Expect = 5e-085
Identities = 258/290 (88%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcgaagaacttaag 181
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 101 ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcgaggaacttaag 160
Query: 182 aagtccctaacagccgttttttcccagtttgggaaaattcttgatgtgcttgctttcaag 241
|| || || || ||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 161 aaatcgctccgcgctgttttctcccagtttgggaagattcttgatgttctcgctttcaag 220
Query: 242 actttgaagcataaaggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgag 301
||||||||||||||||| ||||| |||||||| || |||||||| || ||||| ||||||
Sbjct: 221 actttgaagcataaaggccaagcctgggttgtgtttgaagatgttgcttcagcaactgag 280
Query: 302 gctctgaagaggatgcagggctttcccttctatgacaaaactatgagaattcaatatgcc 361
||| ||||||| ||||| | ||| |||||| || | ||| |||||||||| |||||||||
Sbjct: 281 gctttgaagagcatgcaagacttccccttccataataaacctatgagaatccaatatgcc 340
Query: 362 aagaccaaatcagatattatagcaaaggctgatggcacctttgtacctcg 411
||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 341 aagaccaaatcggatattatagcaaaagctgatggcacctttgtacctcg 390
>gb|D46932.1|D46932 RICS11902A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 369
Score = 268 bits (135), Expect = 6e-069
Identities = 240/273 (87%), Gaps = 2/273 (0%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcgaagaacttaag 181
|||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 99 ccgaacgtnaccntctacatcaacaacctcaacgagaagatcaagctcgaggaacttaag 158
Query: 182 aagtccctaacagccgttttttcccagtttgggaaaattcttgatgtgcttgctttcaag 241
|| || || | || ||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 159 aaatcgctc-cggctgttttctcccagtttgggaagattcttgatgttctcgctttcaag 217
Query: 242 actttgaagcataaaggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgag 301
||||||||||||||||| ||||| |||||||| || |||||||| || ||||| ||||||
Sbjct: 218 actttgaagcataaaggccaagcctgggttgtgtttgaagatgttgcttcagc-actgag 276
Query: 302 gctctgaagaggatgcagggctttcccttctatgacaaaactatgagaattcaatatgcc 361
||| ||||||| ||||| | ||| |||||| || | ||| |||||||||| |||||||||
Sbjct: 277 gctttgaagagcatgcaagacttccccttccataataaacctatgagaatccaatatgcc 336
Query: 362 aagaccaaatcagatattatagcaaaggctgat 394
||||||||||| |||||||||||||| ||||||
Sbjct: 337 aagaccaaatcggatattatagcaaaagctgat 369
>gb|CF281274.1|CF281274 14ETL--08-E06.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--08-E06, mRNA sequence
Length = 557
Score = 196 bits (99), Expect = 2e-047
Identities = 316/387 (81%), Gaps = 6/387 (1%)
Strand = Plus / Minus
Query: 443 gaaaagaagcagaagcgcgagcatcaccatgatgctggtgctagtcaaattggcatgggt 502
||||||||||||||||| ||||| |||||||||| || |||||| ||||| | |||
Sbjct: 557 gaaaagaagcagaagcgtgagcagcaccatgatg----tg--agtcaagttggcttaggt 504
Query: 503 gtaactgcttaccctggtgtttatggggctccacagctcacccagatacctatagcagga 562
|| | ||||||||| ||||||||||| ||||| | |||| | ||| ||||| | || ||
Sbjct: 503 gtgaatgcttaccccggtgtttatggagctcctccgctctctcagctaccttttgctggc 444
Query: 563 ggacaaagggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaac 622
| ||| | |||||||||||| ||||| || ||||| || |||||| | || |||||||||
Sbjct: 443 gcacagaaggtcatgatgccggagataattgtaccgaataacatcctcttcgtccaaaac 384
Query: 623 ttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttc 682
| ||||| |||||||| || |||||||| |||||||||||||| |||||||| || |||
Sbjct: 383 ctcccacatgagacgacccctatgatgcttcagatgctcttctgtcagtacccagggttc 324
Query: 683 aaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacgag 742
||||| || | ||| | || || |||||||||||||||||||||||||| || ||||||
Sbjct: 323 aaggaagtcagaatggttgaagcaaagcctgggattgctttcgtggagtacggcgacgag 264
Query: 743 acccaggccactgctgccatgaacaaccttcaaagcttcaaaattacaaaagaaaaccag 802
||||| || |||||||||||| | ||||| | ||||||||||| ||||| ||||||
Sbjct: 263 gggcaggctaccgctgccatgaaccatcttcaggggttcaaaattacgaaagataaccag 204
Query: 803 atggtcatcacatatgcgaagaagtaa 829
||| | || | |||||||||||||||
Sbjct: 203 atgcttatttcgtatgcgaagaagtaa 177
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01,
complete sequence
Length = 141661
Score = 172 bits (87), Expect = 3e-040
Identities = 216/259 (83%)
Strand = Plus / Plus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccaca 630
|||||||||||| ||||| || ||||| || |||||| | || ||||||||| | |||||
Sbjct: 140422 ggtcatgatgccggagataattgtaccgaataacatcctcttcgtccaaaacctcccaca 140481
Query: 631 cgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggt 690
|||||||| || |||||||| |||||||||||||| |||||||| || |||||||| ||
Sbjct: 140482 tgagacgacccctatgatgcttcagatgctcttctgtcagtacccagggttcaaggaagt 140541
Query: 691 tcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacgagacccaggc 750
| ||| | || || |||||||||||||||||||||||||| || |||||| |||||
Sbjct: 140542 cagaatggttgaagcaaagcctgggattgctttcgtggagtacggcgacgaggggcaggc 140601
Query: 751 cactgctgccatgaacaaccttcaaagcttcaaaattacaaaagaaaaccagatggtcat 810
|| |||||||||||| | ||||| | ||||||||||| ||||| ||||||||| | ||
Sbjct: 140602 taccgctgccatgaaccatcttcaggggttcaaaattacgaaagataaccagatgcttat 140661
Query: 811 cacatatgcgaagaagtaa 829
| | |||||||||||||||
Sbjct: 140662 ctcgtatgcgaagaagtaa 140680
Score = 141 bits (71), Expect = 9e-031
Identities = 119/135 (88%)
Strand = Plus / Plus
Query: 197 gttttttcccagtttgggaaaattcttgatgtgcttgctttcaagactttgaagcataaa 256
||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 138239 gttttctcccagtttgggaagattcttgatgttctcgctttcaagactttgaagcataaa 138298
Query: 257 ggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgaggctctgaagaggatg 316
|| ||||| |||||||| || |||||||| || ||||| ||||||||| ||||||| |||
Sbjct: 138299 ggccaagcctgggttgtgtttgaagatgttgcttcagcaactgaggctttgaagagcatg 138358
Query: 317 cagggctttcccttc 331
|| | ||| ||||||
Sbjct: 138359 caagacttccccttc 138373
Score = 133 bits (67), Expect = 2e-028
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 346 gagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcacctttgt 405
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 138709 gagaatccaatatgccaagaccaaatcggatattatagcaaaagctgatggcacctttgt 138768
Query: 406 acctcgagaaagaagaaagagga 428
||||||||||||||| |||||||
Sbjct: 138769 acctcgagaaagaaggaagagga 138791
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcga 171
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 137624 ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcga 137673
Score = 60.0 bits (30), Expect = 3e-006
Identities = 79/94 (84%), Gaps = 6/94 (6%)
Strand = Plus / Plus
Query: 441 ctgaaaagaagcagaagcgcgagcatcaccatgatgctggtgctagtcaaattggcatgg 500
||||||||||||||||||| ||||| |||||||||| || |||||| ||||| | |
Sbjct: 139597 ctgaaaagaagcagaagcgtgagcagcaccatgatg-tg-----agtcaagttggcttag 139650
Query: 501 gtgtaactgcttaccctggtgtttatggggctcc 534
|||| | ||||||||| ||||||||||| |||||
Sbjct: 139651 gtgtgaatgcttaccccggtgtttatggagctcc 139684
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05,
complete sequence
Length = 145044
Score = 172 bits (87), Expect = 3e-040
Identities = 216/259 (83%)
Strand = Plus / Plus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccaca 630
|||||||||||| ||||| || ||||| || |||||| | || ||||||||| | |||||
Sbjct: 30895 ggtcatgatgccggagataattgtaccgaataacatcctcttcgtccaaaacctcccaca 30954
Query: 631 cgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggt 690
|||||||| || |||||||| |||||||||||||| |||||||| || |||||||| ||
Sbjct: 30955 tgagacgacccctatgatgcttcagatgctcttctgtcagtacccagggttcaaggaagt 31014
Query: 691 tcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacgagacccaggc 750
| ||| | || || |||||||||||||||||||||||||| || |||||| |||||
Sbjct: 31015 cagaatggttgaagcaaagcctgggattgctttcgtggagtacggcgacgaggggcaggc 31074
Query: 751 cactgctgccatgaacaaccttcaaagcttcaaaattacaaaagaaaaccagatggtcat 810
|| |||||||||||| | ||||| | ||||||||||| ||||| ||||||||| | ||
Sbjct: 31075 taccgctgccatgaaccatcttcaggggttcaaaattacgaaagataaccagatgcttat 31134
Query: 811 cacatatgcgaagaagtaa 829
| | |||||||||||||||
Sbjct: 31135 ctcgtatgcgaagaagtaa 31153
Score = 141 bits (71), Expect = 9e-031
Identities = 119/135 (88%)
Strand = Plus / Plus
Query: 197 gttttttcccagtttgggaaaattcttgatgtgcttgctttcaagactttgaagcataaa 256
||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 28712 gttttctcccagtttgggaagattcttgatgttctcgctttcaagactttgaagcataaa 28771
Query: 257 ggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgaggctctgaagaggatg 316
|| ||||| |||||||| || |||||||| || ||||| ||||||||| ||||||| |||
Sbjct: 28772 ggccaagcctgggttgtgtttgaagatgttgcttcagcaactgaggctttgaagagcatg 28831
Query: 317 cagggctttcccttc 331
|| | ||| ||||||
Sbjct: 28832 caagacttccccttc 28846
Score = 133 bits (67), Expect = 2e-028
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 346 gagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcacctttgt 405
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 29182 gagaatccaatatgccaagaccaaatcggatattatagcaaaagctgatggcacctttgt 29241
Query: 406 acctcgagaaagaagaaagagga 428
||||||||||||||| |||||||
Sbjct: 29242 acctcgagaaagaaggaagagga 29264
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcga 171
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 28097 ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcga 28146
Score = 60.0 bits (30), Expect = 3e-006
Identities = 79/94 (84%), Gaps = 6/94 (6%)
Strand = Plus / Plus
Query: 441 ctgaaaagaagcagaagcgcgagcatcaccatgatgctggtgctagtcaaattggcatgg 500
||||||||||||||||||| ||||| |||||||||| || |||||| ||||| | |
Sbjct: 30070 ctgaaaagaagcagaagcgtgagcagcaccatgatg-tg-----agtcaagttggcttag 30123
Query: 501 gtgtaactgcttaccctggtgtttatggggctcc 534
|||| | ||||||||| ||||||||||| |||||
Sbjct: 30124 gtgtgaatgcttaccccggtgtttatggagctcc 30157
>gb|AACV01010914.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010914, whole
genome shotgun sequence
Length = 13299
Score = 172 bits (87), Expect = 3e-040
Identities = 216/259 (83%)
Strand = Plus / Minus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccaca 630
|||||||||||| ||||| || ||||| || |||||| | || ||||||||| | |||||
Sbjct: 2989 ggtcatgatgccggagataattgtaccgaataacatcctcttcgtccaaaacctcccaca 2930
Query: 631 cgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggt 690
|||||||| || |||||||| |||||||||||||| |||||||| || |||||||| ||
Sbjct: 2929 tgagacgacccctatgatgcttcagatgctcttctgtcagtacccagggttcaaggaagt 2870
Query: 691 tcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacgagacccaggc 750
| ||| | || || |||||||||||||||||||||||||| || |||||| |||||
Sbjct: 2869 cagaatggttgaagcaaagcctgggattgctttcgtggagtacggcgacgaggggcaggc 2810
Query: 751 cactgctgccatgaacaaccttcaaagcttcaaaattacaaaagaaaaccagatggtcat 810
|| |||||||||||| | ||||| | ||||||||||| ||||| ||||||||| | ||
Sbjct: 2809 taccgctgccatgaaccatcttcaggggttcaaaattacgaaagataaccagatgcttat 2750
Query: 811 cacatatgcgaagaagtaa 829
| | |||||||||||||||
Sbjct: 2749 ctcgtatgcgaagaagtaa 2731
Score = 141 bits (71), Expect = 9e-031
Identities = 119/135 (88%)
Strand = Plus / Minus
Query: 197 gttttttcccagtttgggaaaattcttgatgtgcttgctttcaagactttgaagcataaa 256
||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 5172 gttttctcccagtttgggaagattcttgatgttctcgctttcaagactttgaagcataaa 5113
Query: 257 ggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgaggctctgaagaggatg 316
|| ||||| |||||||| || |||||||| || ||||| ||||||||| ||||||| |||
Sbjct: 5112 ggccaagcctgggttgtgtttgaagatgttgcttcagcaactgaggctttgaagagcatg 5053
Query: 317 cagggctttcccttc 331
|| | ||| ||||||
Sbjct: 5052 caagacttccccttc 5038
Score = 133 bits (67), Expect = 2e-028
Identities = 79/83 (95%)
Strand = Plus / Minus
Query: 346 gagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcacctttgt 405
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 4702 gagaatccaatatgccaagaccaaatcggatattatagcaaaagctgatggcacctttgt 4643
Query: 406 acctcgagaaagaagaaagagga 428
||||||||||||||| |||||||
Sbjct: 4642 acctcgagaaagaaggaagagga 4620
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcga 171
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5787 ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcga 5738
Score = 60.0 bits (30), Expect = 3e-006
Identities = 79/94 (84%), Gaps = 6/94 (6%)
Strand = Plus / Minus
Query: 441 ctgaaaagaagcagaagcgcgagcatcaccatgatgctggtgctagtcaaattggcatgg 500
||||||||||||||||||| ||||| |||||||||| || |||||| ||||| | |
Sbjct: 3813 ctgaaaagaagcagaagcgtgagcagcaccatgatg-tg-----agtcaagttggcttag 3760
Query: 501 gtgtaactgcttaccctggtgtttatggggctcc 534
|||| | ||||||||| ||||||||||| |||||
Sbjct: 3759 gtgtgaatgcttaccccggtgtttatggagctcc 3726
>ref|NT_107216.1| Oryza sativa (japonica cultivar-group)
Length = 2910826
Score = 172 bits (87), Expect = 3e-040
Identities = 216/259 (83%)
Strand = Plus / Plus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccaca 630
|||||||||||| ||||| || ||||| || |||||| | || ||||||||| | |||||
Sbjct: 2243565 ggtcatgatgccggagataattgtaccgaataacatcctcttcgtccaaaacctcccaca 2243624
Query: 631 cgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggt 690
|||||||| || |||||||| |||||||||||||| |||||||| || |||||||| ||
Sbjct: 2243625 tgagacgacccctatgatgcttcagatgctcttctgtcagtacccagggttcaaggaagt 2243684
Query: 691 tcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacgagacccaggc 750
| ||| | || || |||||||||||||||||||||||||| || |||||| |||||
Sbjct: 2243685 cagaatggttgaagcaaagcctgggattgctttcgtggagtacggcgacgaggggcaggc 2243744
Query: 751 cactgctgccatgaacaaccttcaaagcttcaaaattacaaaagaaaaccagatggtcat 810
|| |||||||||||| | ||||| | ||||||||||| ||||| ||||||||| | ||
Sbjct: 2243745 taccgctgccatgaaccatcttcaggggttcaaaattacgaaagataaccagatgcttat 2243804
Query: 811 cacatatgcgaagaagtaa 829
| | |||||||||||||||
Sbjct: 2243805 ctcgtatgcgaagaagtaa 2243823
Score = 141 bits (71), Expect = 9e-031
Identities = 119/135 (88%)
Strand = Plus / Plus
Query: 197 gttttttcccagtttgggaaaattcttgatgtgcttgctttcaagactttgaagcataaa 256
||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 2241382 gttttctcccagtttgggaagattcttgatgttctcgctttcaagactttgaagcataaa 2241441
Query: 257 ggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgaggctctgaagaggatg 316
|| ||||| |||||||| || |||||||| || ||||| ||||||||| ||||||| |||
Sbjct: 2241442 ggccaagcctgggttgtgtttgaagatgttgcttcagcaactgaggctttgaagagcatg 2241501
Query: 317 cagggctttcccttc 331
|| | ||| ||||||
Sbjct: 2241502 caagacttccccttc 2241516
Score = 133 bits (67), Expect = 2e-028
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 346 gagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcacctttgt 405
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 2241852 gagaatccaatatgccaagaccaaatcggatattatagcaaaagctgatggcacctttgt 2241911
Query: 406 acctcgagaaagaagaaagagga 428
||||||||||||||| |||||||
Sbjct: 2241912 acctcgagaaagaaggaagagga 2241934
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcga 171
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2240767 ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcga 2240816
Score = 60.0 bits (30), Expect = 3e-006
Identities = 79/94 (84%), Gaps = 6/94 (6%)
Strand = Plus / Plus
Query: 441 ctgaaaagaagcagaagcgcgagcatcaccatgatgctggtgctagtcaaattggcatgg 500
||||||||||||||||||| ||||| |||||||||| || |||||| ||||| | |
Sbjct: 2242740 ctgaaaagaagcagaagcgtgagcagcaccatgatg-tg-----agtcaagttggcttag 2242793
Query: 501 gtgtaactgcttaccctggtgtttatggggctcc 534
|||| | ||||||||| ||||||||||| |||||
Sbjct: 2242794 gtgtgaatgcttaccccggtgtttatggagctcc 2242827
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 172 bits (87), Expect = 3e-040
Identities = 216/259 (83%)
Strand = Plus / Plus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccaca 630
|||||||||||| ||||| || ||||| || |||||| | || ||||||||| | |||||
Sbjct: 3168437 ggtcatgatgccggagataattgtaccgaataacatcctcttcgtccaaaacctcccaca 3168496
Query: 631 cgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggt 690
|||||||| || |||||||| |||||||||||||| |||||||| || |||||||| ||
Sbjct: 3168497 tgagacgacccctatgatgcttcagatgctcttctgtcagtacccagggttcaaggaagt 3168556
Query: 691 tcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacgagacccaggc 750
| ||| | || || |||||||||||||||||||||||||| || |||||| |||||
Sbjct: 3168557 cagaatggttgaagcaaagcctgggattgctttcgtggagtacggcgacgaggggcaggc 3168616
Query: 751 cactgctgccatgaacaaccttcaaagcttcaaaattacaaaagaaaaccagatggtcat 810
|| |||||||||||| | ||||| | ||||||||||| ||||| ||||||||| | ||
Sbjct: 3168617 taccgctgccatgaaccatcttcaggggttcaaaattacgaaagataaccagatgcttat 3168676
Query: 811 cacatatgcgaagaagtaa 829
| | |||||||||||||||
Sbjct: 3168677 ctcgtatgcgaagaagtaa 3168695
Score = 141 bits (71), Expect = 9e-031
Identities = 119/135 (88%)
Strand = Plus / Plus
Query: 197 gttttttcccagtttgggaaaattcttgatgtgcttgctttcaagactttgaagcataaa 256
||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 3166254 gttttctcccagtttgggaagattcttgatgttctcgctttcaagactttgaagcataaa 3166313
Query: 257 ggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgaggctctgaagaggatg 316
|| ||||| |||||||| || |||||||| || ||||| ||||||||| ||||||| |||
Sbjct: 3166314 ggccaagcctgggttgtgtttgaagatgttgcttcagcaactgaggctttgaagagcatg 3166373
Query: 317 cagggctttcccttc 331
|| | ||| ||||||
Sbjct: 3166374 caagacttccccttc 3166388
Score = 133 bits (67), Expect = 2e-028
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 346 gagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcacctttgt 405
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 3166724 gagaatccaatatgccaagaccaaatcggatattatagcaaaagctgatggcacctttgt 3166783
Query: 406 acctcgagaaagaagaaagagga 428
||||||||||||||| |||||||
Sbjct: 3166784 acctcgagaaagaaggaagagga 3166806
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcga 171
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3165639 ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcga 3165688
Score = 60.0 bits (30), Expect = 3e-006
Identities = 79/94 (84%), Gaps = 6/94 (6%)
Strand = Plus / Plus
Query: 441 ctgaaaagaagcagaagcgcgagcatcaccatgatgctggtgctagtcaaattggcatgg 500
||||||||||||||||||| ||||| |||||||||| || |||||| ||||| | |
Sbjct: 3167613 ctgaaaagaagcagaagcgtgagcagcaccatgatg-tg-----agtcaagttggcttag 3167666
Query: 501 gtgtaactgcttaccctggtgtttatggggctcc 534
|||| | ||||||||| ||||||||||| |||||
Sbjct: 3167667 gtgtgaatgcttaccccggtgtttatggagctcc 3167700
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 172 bits (87), Expect = 3e-040
Identities = 216/259 (83%)
Strand = Plus / Plus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccaca 630
|||||||||||| ||||| || ||||| || |||||| | || ||||||||| | |||||
Sbjct: 3168437 ggtcatgatgccggagataattgtaccgaataacatcctcttcgtccaaaacctcccaca 3168496
Query: 631 cgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggt 690
|||||||| || |||||||| |||||||||||||| |||||||| || |||||||| ||
Sbjct: 3168497 tgagacgacccctatgatgcttcagatgctcttctgtcagtacccagggttcaaggaagt 3168556
Query: 691 tcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacgagacccaggc 750
| ||| | || || |||||||||||||||||||||||||| || |||||| |||||
Sbjct: 3168557 cagaatggttgaagcaaagcctgggattgctttcgtggagtacggcgacgaggggcaggc 3168616
Query: 751 cactgctgccatgaacaaccttcaaagcttcaaaattacaaaagaaaaccagatggtcat 810
|| |||||||||||| | ||||| | ||||||||||| ||||| ||||||||| | ||
Sbjct: 3168617 taccgctgccatgaaccatcttcaggggttcaaaattacgaaagataaccagatgcttat 3168676
Query: 811 cacatatgcgaagaagtaa 829
| | |||||||||||||||
Sbjct: 3168677 ctcgtatgcgaagaagtaa 3168695
Score = 141 bits (71), Expect = 9e-031
Identities = 119/135 (88%)
Strand = Plus / Plus
Query: 197 gttttttcccagtttgggaaaattcttgatgtgcttgctttcaagactttgaagcataaa 256
||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 3166254 gttttctcccagtttgggaagattcttgatgttctcgctttcaagactttgaagcataaa 3166313
Query: 257 ggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgaggctctgaagaggatg 316
|| ||||| |||||||| || |||||||| || ||||| ||||||||| ||||||| |||
Sbjct: 3166314 ggccaagcctgggttgtgtttgaagatgttgcttcagcaactgaggctttgaagagcatg 3166373
Query: 317 cagggctttcccttc 331
|| | ||| ||||||
Sbjct: 3166374 caagacttccccttc 3166388
Score = 133 bits (67), Expect = 2e-028
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 346 gagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcacctttgt 405
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 3166724 gagaatccaatatgccaagaccaaatcggatattatagcaaaagctgatggcacctttgt 3166783
Query: 406 acctcgagaaagaagaaagagga 428
||||||||||||||| |||||||
Sbjct: 3166784 acctcgagaaagaaggaagagga 3166806
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcga 171
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3165639 ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcga 3165688
Score = 60.0 bits (30), Expect = 3e-006
Identities = 79/94 (84%), Gaps = 6/94 (6%)
Strand = Plus / Plus
Query: 441 ctgaaaagaagcagaagcgcgagcatcaccatgatgctggtgctagtcaaattggcatgg 500
||||||||||||||||||| ||||| |||||||||| || |||||| ||||| | |
Sbjct: 3167613 ctgaaaagaagcagaagcgtgagcagcaccatgatg-tg-----agtcaagttggcttag 3167666
Query: 501 gtgtaactgcttaccctggtgtttatggggctcc 534
|||| | ||||||||| ||||||||||| |||||
Sbjct: 3167667 gtgtgaatgcttaccccggtgtttatggagctcc 3167700
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 172 bits (87), Expect = 3e-040
Identities = 216/259 (83%)
Strand = Plus / Plus
Query: 571 ggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaaacttgccaca 630
|||||||||||| ||||| || ||||| || |||||| | || ||||||||| | |||||
Sbjct: 3153178 ggtcatgatgccggagataattgtaccgaataacatcctcttcgtccaaaacctcccaca 3153237
Query: 631 cgagacgacgcccatgatgctccagatgctcttctgccagtaccctggcttcaaggaggt 690
|||||||| || |||||||| |||||||||||||| |||||||| || |||||||| ||
Sbjct: 3153238 tgagacgacccctatgatgcttcagatgctcttctgtcagtacccagggttcaaggaagt 3153297
Query: 691 tcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacgagacccaggc 750
| ||| | || || |||||||||||||||||||||||||| || |||||| |||||
Sbjct: 3153298 cagaatggttgaagcaaagcctgggattgctttcgtggagtacggcgacgaggggcaggc 3153357
Query: 751 cactgctgccatgaacaaccttcaaagcttcaaaattacaaaagaaaaccagatggtcat 810
|| |||||||||||| | ||||| | ||||||||||| ||||| ||||||||| | ||
Sbjct: 3153358 taccgctgccatgaaccatcttcaggggttcaaaattacgaaagataaccagatgcttat 3153417
Query: 811 cacatatgcgaagaagtaa 829
| | |||||||||||||||
Sbjct: 3153418 ctcgtatgcgaagaagtaa 3153436
Score = 141 bits (71), Expect = 9e-031
Identities = 119/135 (88%)
Strand = Plus / Plus
Query: 197 gttttttcccagtttgggaaaattcttgatgtgcttgctttcaagactttgaagcataaa 256
||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 3150995 gttttctcccagtttgggaagattcttgatgttctcgctttcaagactttgaagcataaa 3151054
Query: 257 ggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgaggctctgaagaggatg 316
|| ||||| |||||||| || |||||||| || ||||| ||||||||| ||||||| |||
Sbjct: 3151055 ggccaagcctgggttgtgtttgaagatgttgcttcagcaactgaggctttgaagagcatg 3151114
Query: 317 cagggctttcccttc 331
|| | ||| ||||||
Sbjct: 3151115 caagacttccccttc 3151129
Score = 133 bits (67), Expect = 2e-028
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 346 gagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcacctttgt 405
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 3151465 gagaatccaatatgccaagaccaaatcggatattatagcaaaagctgatggcacctttgt 3151524
Query: 406 acctcgagaaagaagaaagagga 428
||||||||||||||| |||||||
Sbjct: 3151525 acctcgagaaagaaggaagagga 3151547
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcga 171
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3150380 ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcga 3150429
Score = 60.0 bits (30), Expect = 3e-006
Identities = 79/94 (84%), Gaps = 6/94 (6%)
Strand = Plus / Plus
Query: 441 ctgaaaagaagcagaagcgcgagcatcaccatgatgctggtgctagtcaaattggcatgg 500
||||||||||||||||||| ||||| |||||||||| || |||||| ||||| | |
Sbjct: 3152353 ctgaaaagaagcagaagcgtgagcagcaccatgatg-tg-----agtcaagttggcttag 3152406
Query: 501 gtgtaactgcttaccctggtgtttatggggctcc 534
|||| | ||||||||| ||||||||||| |||||
Sbjct: 3152407 gtgtgaatgcttaccccggtgtttatggagctcc 3152440
>gb|D47053.1|D47053 RICS12137A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 379
Score = 168 bits (85), Expect = 4e-039
Identities = 179/211 (84%), Gaps = 1/211 (0%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcgaagaacttaag 181
||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 99 ccgaacgncaccatctacatcaacaacctcaacgagaagatcaagctcgaggaacttaag 158
Query: 182 aagtccctaacagccgttttttcccagtttgggaaaattcttgatgtgcttgctttcaag 241
|| || || || |||| |||||||||||||| |||||| |||| || |||||||||
Sbjct: 159 aaatcgctccgcgctnttttctcccagtttgggaagattcttnatgttctcgctttcaag 218
Query: 242 actttgaagcataaaggtcaagcttgggttgtcttcgaagatgtcgcatcagctact-ga 300
|||||||||||||||| ||||| ||||| || || |||||||| || ||||| ||| ||
Sbjct: 219 actttgaagcataaagnccaagcctgggtngtgtttgaagatgttgcttcagcaactgga 278
Query: 301 ggctctgaagaggatgcagggctttcccttc 331
|||| ||||| | ||||| | ||| ||||||
Sbjct: 279 ggctttgaagngcatgcaagacttccccttc 309
>gb|AQ867693.1|AQ867693 nbeb0034I07f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0034I07f, DNA sequence
Length = 502
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 122 ccgaacgtcaccatctatatcaacaacctcaacgagaagatcaagctcga 171
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 317 ccgaacgtcaccatctacatcaacaacctcaacgagaagatcaagctcga 366
>gb|D24080.1|D24080 RICR1158A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1158_1A, mRNA sequence
Length = 374
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 255 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 314
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 315 agccaagccaggcattgcttttgtgga 341
>gb|AU029267.1|AU029267 AU029267 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30033_6Z, mRNA sequence
Length = 539
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 195 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 254
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 255 agccaagccaggcattgcttttgtgga 281
>gb|AU031732.1|AU031732 AU031732 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1158_8Z, mRNA sequence
Length = 735
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 390 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 449
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 450 agccaagccaggcattgcttttgtgga 476
>gb|CB670209.1|CB670209 OSJNEe03C22.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03C22 5', mRNA sequence
Length = 839
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 537 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 596
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 597 agccaagccaggcattgcttttgtgga 623
>gb|CB670210.1|CB670210 OSJNEe03C22.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03C22 3', mRNA sequence
Length = 803
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 686 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 627
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 626 agccaagccaggcattgcttttgtgga 600
>gb|CB682395.1|CB682395 OSJNEf09K22.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf09K22 5', mRNA sequence
Length = 856
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 553 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 612
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 613 agccaagccaggcattgcttttgtgga 639
>gb|CB682396.1|CB682396 OSJNEf09K22.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf09K22 3', mRNA sequence
Length = 803
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 677 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 618
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 617 agccaagccaggcattgcttttgtgga 591
>gb|CF279322.1|CF279322 14ETL--05-J08.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--05-J08, mRNA sequence
Length = 553
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 345 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 286
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 285 agccaagccaggcattgcttttgtgga 259
>gb|CF279492.1|CF279492 14ETL--05-M24.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--05-M24, mRNA sequence
Length = 638
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 341 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 282
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 281 agccaagccaggcattgcttttgtgga 255
>gb|CF293901.1|CF293901 30DGS--03-D23.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--03-D23, mRNA sequence
Length = 549
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 344 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 285
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 284 agccaagccaggcattgcttttgtgga 258
>dbj|AK103337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126A09, full
insert sequence
Length = 919
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 573 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 632
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 633 agccaagccaggcattgcttttgtgga 659
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0036G02, from chromosome 3, complete sequence
Length = 153308
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 6610 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 6551
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 6550 agccaagccaggcattgcttttgtgga 6524
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10,
complete sequence
Length = 139714
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 107350 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 107291
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 107290 agccaagccaggcattgcttttgtgga 107264
>gb|AACV01006422.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006422, whole
genome shotgun sequence
Length = 27228
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 10182 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 10241
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 10242 agccaagccaggcattgcttttgtgga 10268
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 1794714 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 1794655
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 1794654 agccaagccaggcattgcttttgtgga 1794628
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 10534564 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 10534505
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 10534504 agccaagccaggcattgcttttgtgga 10534478
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 10726926 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 10726867
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 10726866 agccaagccaggcattgcttttgtgga 10726840
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 10448898 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 10448839
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 10448838 agccaagccaggcattgcttttgtgga 10448812
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 61.9 bits (31), Expect = 7e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || ||| ||||||||||| |||| ||| || |||||||||||
Sbjct: 10450797 catgatgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcga 10450738
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 10450737 agccaagccaggcattgcttttgtgga 10450711
>gb|AU057633.1|AU057633 AU057633 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21632_2Z, mRNA sequence
Length = 713
Score = 54.0 bits (27), Expect = 2e-004
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 647 atgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcgaggcg 706
||||||||||| || ||| ||||||||||| |||| ||| || ||||||||||| ||
Sbjct: 360 atgctccagatcctgttccagcagtaccctggtttcagggaagtccggatgatcgaagcc 419
Query: 707 aagcctgggattgctttcgtgga 729
||||| || |||||||| |||||
Sbjct: 420 aagccaggcattgcttttgtgga 442
>gb|CF294951.1|CF294951 30DGS--04-K19.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--04-K19, mRNA sequence
Length = 348
Score = 54.0 bits (27), Expect = 2e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 643 catgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcga 702
||||||||||||||| || | | ||||||||||| |||| ||| || |||||||||||
Sbjct: 315 catgatgctccagatcctgtcccagcagtaccctggtttcagggaagtccggatgatcga 256
Query: 703 ggcgaagcctgggattgctttcgtgga 729
|| ||||| || |||||||| |||||
Sbjct: 255 agccaagccaggcattgcttttgtgga 229
>gb|D38946.1|D38946 RICC2827A Rice callus Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 355
Score = 44.1 bits (22), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 668 cagtaccctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgcttt 723
||||||||||| || | ||| | ||||||||||||||| ||| | |||||| ||||
Sbjct: 273 cagtaccctggtttnagggaagntcggatgatcgaggccaaggcagggatttcttt 328
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,756,729
Number of Sequences: 438736
Number of extensions: 1756729
Number of successful extensions: 11723
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11390
Number of HSP's gapped (non-prelim): 306
length of query: 1096
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1075
effective length of database: 2,791,206,460
effective search space: 3000546944500
effective search space used: 3000546944500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)