BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012883.2.1
(1189 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK073327.1| Oryza sativa (japonica cultivar-group) cDNA... 823 0.0
dbj|AK099351.1| Oryza sativa (japonica cultivar-group) cDNA... 823 0.0
ref|XM_476713.1| Oryza sativa (japonica cultivar-group), mRNA 823 0.0
ref|XM_506177.1| PREDICTED Oryza sativa (japonica cultivar-... 823 0.0
gb|CF335795.1|CF335795 JMT--05-J21.g1 AtJMT-overexpressing ... 373 e-100
gb|AY224573.1| Oryza sativa (japonica cultivar-group) isola... 373 e-100
gb|C93475.1|C93475 C93475 Rice callus Oryza sativa (japonic... 248 6e-063
dbj|AK107096.1| Oryza sativa (japonica cultivar-group) cDNA... 145 6e-032
dbj|AP004267.3| Oryza sativa (japonica cultivar-group) geno... 145 6e-032
dbj|AP004664.5| Oryza sativa (japonica cultivar-group) geno... 145 6e-032
gb|AACV01015236.1| Oryza sativa (japonica cultivar-group) c... 145 6e-032
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 145 6e-032
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 145 6e-032
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 145 6e-032
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 145 6e-032
gb|AQ861188.1|AQ861188 nbeb0016L11r CUGI Rice BAC Library (... 109 3e-021
gb|AQ687536.1|AQ687536 nbxb0075I09r CUGI Rice BAC Library O... 101 9e-019
gb|CF324713.1|CF324713 JMT1--01-E10.g1 AtJMT-overexpressing... 82 8e-013
gb|AQ156100.1|AQ156100 nbxb0002B08r CUGI Rice BAC Library O... 60 3e-006
gb|AQ051571.1|AQ051571 nbxb0002cA04r CUGI Rice BAC Library ... 60 3e-006
gb|AQ577305.1|AQ577305 nbxb0090D12f CUGI Rice BAC Library O... 60 3e-006
gb|AQ794204.1|AQ794204 nbxb0052E12f CUGI Rice BAC Library O... 60 3e-006
gb|AACV01015237.1| Oryza sativa (japonica cultivar-group) c... 46 0.044
gb|AQ865406.1|AQ865406 nbeb0025E12f CUGI Rice BAC Library (... 44 0.17
dbj|AP004990.3| Oryza sativa (japonica cultivar-group) geno... 44 0.17
gb|AACV01016438.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 44 0.17
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
>dbj|AK073327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030B18, full
insert sequence
Length = 1275
Score = 823 bits (415), Expect = 0.0
Identities = 792/918 (86%), Gaps = 3/918 (0%)
Strand = Plus / Plus
Query: 90 cctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctc 149
|||||||||||||||||| |||||||| ||||| ||||||||||||||| | | ||| ||
Sbjct: 93 cctcgccgccatgaacaatctcctcaccgattcgtttgagctccctcggggaggctcttc 152
Query: 150 aagagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaaga 209
|||||| | || ||||||||||||||||| |||||| |||||||||| | ||||
Sbjct: 153 aagagatggggacattgaaatgggaatgcaa---gctgatccttcagacaatctaaaagg 209
Query: 210 tttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaa 269
||||||||| ||||| || |||||||| || ||||||| |||||| | ||||| ||| |
Sbjct: 210 tttcttgaaaaaggttgacgcaattgaaagcctaattgctaagctgacgaatctcttgca 269
Query: 270 taagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagc 329
|||||| || ||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct: 270 taagcttcagactgcaaatgaggaatctaaagcggttacaaaagcaagggacatgaaagc 329
Query: 330 aattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaa 389
|||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 330 aattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggcaaa 389
Query: 390 gacaaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtgg 449
|||||||||||||||| |||||| ||||||| |||| || || ||||| |||||||||||
Sbjct: 390 gacaaaagttgatgaattggaaaaagataacttatcaaacagacaaaagcctggatgtgg 449
Query: 450 aaagggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaatt 509
|| || ||||| || || ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 450 gaaaggatctgcggtagatcgatcaagagaacagactactggagcagtgaaaaagaaatt 509
Query: 510 gaaggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgaga 569
|||||| || ||||||||||||||| ||||||||||||||| |||| |||||||| ||
Sbjct: 510 gaaggagcgcatggatgattttcaggttttgagagaagcaatccggcaggagtatcgtga 569
Query: 570 ggttgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattga 629
|| || ||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||
Sbjct: 570 tgtcgttgaaagaagggtgtttacagtaactggtagtcgtcctgatgaagagacagttga 629
Query: 630 tgacttgatagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcaggg 689
| || |||||||| |||| |||||||||||| ||| |||| ||||||||||| |||||
Sbjct: 630 caatttaatagagactggaagaagtgagcaaattttccaagaagctatccaacagcaggg 689
Query: 690 aagaggccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaaggga 749
||||||||| ||||| ||||||||||| || |||||||| || || ||||||||||| ||
Sbjct: 690 aagaggccaaatactggacactgttgcagagatacaggaacgtcacgatgctgtaagaga 749
Query: 750 tctagagaggaagcttctggagttgcaacagatattcatggacatggcagttcttgttga 809
||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||||
Sbjct: 750 tctagagaggaagcttctggagttgcagcagatattcatggatatggcagttttggttga 809
Query: 810 ggcgcaaggagacatgatcaacaacatcgagacccatgtctcgaacgccaccaaccacat 869
|| ||||||||||||||||||||||| ||||| ||||| || || || |||||||||||
Sbjct: 810 tgctcaaggagacatgatcaacaacatagagacacatgtttcaaatgctaccaaccacat 869
Query: 870 acagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaattcgaggaagtg 929
||| ||||| || || || || |||||||||||||| || |||| ||| || ||||||||
Sbjct: 870 acaacaaggcgtcagtgctctacagaacgcgaagaagctccagaagaactccaggaagtg 929
Query: 930 gatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtcgtcgcagtcat 989
||||||||||||||||||| | ||||| | ||||| ||| ||||||||||||| |||||
Sbjct: 930 gatgtgctacgccatcatcctcctgctcatcatagtggtgatcattgtcgtcgccgtcat 989
Query: 990 ccagccatggaagaaggg 1007
||||||||||||||||||
Sbjct: 990 ccagccatggaagaaggg 1007
>dbj|AK099351.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030B17, full
insert sequence
Length = 1275
Score = 823 bits (415), Expect = 0.0
Identities = 792/918 (86%), Gaps = 3/918 (0%)
Strand = Plus / Plus
Query: 90 cctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctc 149
|||||||||||||||||| |||||||| ||||| ||||||||||||||| | | ||| ||
Sbjct: 93 cctcgccgccatgaacaatctcctcaccgattcgtttgagctccctcggggaggctcttc 152
Query: 150 aagagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaaga 209
|||||| | || ||||||||||||||||| |||||| |||||||||| | ||||
Sbjct: 153 aagagatggggacattgaaatgggaatgcaa---gctgatccttcagacaatctaaaagg 209
Query: 210 tttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaa 269
||||||||| ||||| || |||||||| || ||||||| |||||| | ||||| ||| |
Sbjct: 210 tttcttgaaaaaggttgacgcaattgaaagcctaattgctaagctgacgaatctcttgca 269
Query: 270 taagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagc 329
|||||| || ||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct: 270 taagcttcagactgcaaatgaggaatctaaagcggttacaaaagcaagggacatgaaagc 329
Query: 330 aattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaa 389
|||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 330 aattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggcaaa 389
Query: 390 gacaaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtgg 449
|||||||||||||||| |||||| ||||||| |||| || || ||||| |||||||||||
Sbjct: 390 gacaaaagttgatgaattggaaaaagataacttatcaaacagacaaaagcctggatgtgg 449
Query: 450 aaagggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaatt 509
|| || ||||| || || ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 450 gaaaggatctgcggtagatcgatcaagagaacagactactggagcagtgaaaaagaaatt 509
Query: 510 gaaggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgaga 569
|||||| || ||||||||||||||| ||||||||||||||| |||| |||||||| ||
Sbjct: 510 gaaggagcgcatggatgattttcaggttttgagagaagcaatccggcaggagtatcgtga 569
Query: 570 ggttgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattga 629
|| || ||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||
Sbjct: 570 tgtcgttgaaagaagggtgtttacagtaactggtagtcgtcctgatgaagagacagttga 629
Query: 630 tgacttgatagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcaggg 689
| || |||||||| |||| |||||||||||| ||| |||| ||||||||||| |||||
Sbjct: 630 caatttaatagagactggaagaagtgagcaaattttccaagaagctatccaacagcaggg 689
Query: 690 aagaggccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaaggga 749
||||||||| ||||| ||||||||||| || |||||||| || || ||||||||||| ||
Sbjct: 690 aagaggccaaatactggacactgttgcagagatacaggaacgtcacgatgctgtaagaga 749
Query: 750 tctagagaggaagcttctggagttgcaacagatattcatggacatggcagttcttgttga 809
||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||||
Sbjct: 750 tctagagaggaagcttctggagttgcagcagatattcatggatatggcagttttggttga 809
Query: 810 ggcgcaaggagacatgatcaacaacatcgagacccatgtctcgaacgccaccaaccacat 869
|| ||||||||||||||||||||||| ||||| ||||| || || || |||||||||||
Sbjct: 810 tgctcaaggagacatgatcaacaacatagagacacatgtttcaaatgctaccaaccacat 869
Query: 870 acagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaattcgaggaagtg 929
||| ||||| || || || || |||||||||||||| || |||| ||| || ||||||||
Sbjct: 870 acaacaaggcgtcagtgctctacagaacgcgaagaagctccagaagaactccaggaagtg 929
Query: 930 gatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtcgtcgcagtcat 989
||||||||||||||||||| | ||||| | ||||| ||| ||||||||||||| |||||
Sbjct: 930 gatgtgctacgccatcatcctcctgctcatcatagtggtgatcattgtcgtcgccgtcat 989
Query: 990 ccagccatggaagaaggg 1007
||||||||||||||||||
Sbjct: 990 ccagccatggaagaaggg 1007
>ref|XM_476713.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1276
Score = 823 bits (415), Expect = 0.0
Identities = 792/918 (86%), Gaps = 3/918 (0%)
Strand = Plus / Plus
Query: 90 cctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctc 149
|||||||||||||||||| |||||||| ||||| ||||||||||||||| | | ||| ||
Sbjct: 94 cctcgccgccatgaacaatctcctcaccgattcgtttgagctccctcggggaggctcttc 153
Query: 150 aagagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaaga 209
|||||| | || ||||||||||||||||| |||||| |||||||||| | ||||
Sbjct: 154 aagagatggggacattgaaatgggaatgcaa---gctgatccttcagacaatctaaaagg 210
Query: 210 tttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaa 269
||||||||| ||||| || |||||||| || ||||||| |||||| | ||||| ||| |
Sbjct: 211 tttcttgaaaaaggttgacgcaattgaaagcctaattgctaagctgacgaatctcttgca 270
Query: 270 taagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagc 329
|||||| || ||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct: 271 taagcttcagactgcaaatgaggaatctaaagcggttacaaaagcaagggacatgaaagc 330
Query: 330 aattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaa 389
|||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 331 aattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggcaaa 390
Query: 390 gacaaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtgg 449
|||||||||||||||| |||||| ||||||| |||| || || ||||| |||||||||||
Sbjct: 391 gacaaaagttgatgaattggaaaaagataacttatcaaacagacaaaagcctggatgtgg 450
Query: 450 aaagggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaatt 509
|| || ||||| || || ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 451 gaaaggatctgcggtagatcgatcaagagaacagactactggagcagtgaaaaagaaatt 510
Query: 510 gaaggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgaga 569
|||||| || ||||||||||||||| ||||||||||||||| |||| |||||||| ||
Sbjct: 511 gaaggagcgcatggatgattttcaggttttgagagaagcaatccggcaggagtatcgtga 570
Query: 570 ggttgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattga 629
|| || ||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||
Sbjct: 571 tgtcgttgaaagaagggtgtttacagtaactggtagtcgtcctgatgaagagacagttga 630
Query: 630 tgacttgatagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcaggg 689
| || |||||||| |||| |||||||||||| ||| |||| ||||||||||| |||||
Sbjct: 631 caatttaatagagactggaagaagtgagcaaattttccaagaagctatccaacagcaggg 690
Query: 690 aagaggccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaaggga 749
||||||||| ||||| ||||||||||| || |||||||| || || ||||||||||| ||
Sbjct: 691 aagaggccaaatactggacactgttgcagagatacaggaacgtcacgatgctgtaagaga 750
Query: 750 tctagagaggaagcttctggagttgcaacagatattcatggacatggcagttcttgttga 809
||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||||
Sbjct: 751 tctagagaggaagcttctggagttgcagcagatattcatggatatggcagttttggttga 810
Query: 810 ggcgcaaggagacatgatcaacaacatcgagacccatgtctcgaacgccaccaaccacat 869
|| ||||||||||||||||||||||| ||||| ||||| || || || |||||||||||
Sbjct: 811 tgctcaaggagacatgatcaacaacatagagacacatgtttcaaatgctaccaaccacat 870
Query: 870 acagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaattcgaggaagtg 929
||| ||||| || || || || |||||||||||||| || |||| ||| || ||||||||
Sbjct: 871 acaacaaggcgtcagtgctctacagaacgcgaagaagctccagaagaactccaggaagtg 930
Query: 930 gatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtcgtcgcagtcat 989
||||||||||||||||||| | ||||| | ||||| ||| ||||||||||||| |||||
Sbjct: 931 gatgtgctacgccatcatcctcctgctcatcatagtggtgatcattgtcgtcgccgtcat 990
Query: 990 ccagccatggaagaaggg 1007
||||||||||||||||||
Sbjct: 991 ccagccatggaagaaggg 1008
>ref|XM_506177.1| PREDICTED Oryza sativa (japonica cultivar-group), P0039H02.103 mRNA
Length = 1276
Score = 823 bits (415), Expect = 0.0
Identities = 792/918 (86%), Gaps = 3/918 (0%)
Strand = Plus / Plus
Query: 90 cctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctc 149
|||||||||||||||||| |||||||| ||||| ||||||||||||||| | | ||| ||
Sbjct: 94 cctcgccgccatgaacaatctcctcaccgattcgtttgagctccctcggggaggctcttc 153
Query: 150 aagagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaaga 209
|||||| | || ||||||||||||||||| |||||| |||||||||| | ||||
Sbjct: 154 aagagatggggacattgaaatgggaatgcaa---gctgatccttcagacaatctaaaagg 210
Query: 210 tttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaa 269
||||||||| ||||| || |||||||| || ||||||| |||||| | ||||| ||| |
Sbjct: 211 tttcttgaaaaaggttgacgcaattgaaagcctaattgctaagctgacgaatctcttgca 270
Query: 270 taagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagc 329
|||||| || ||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct: 271 taagcttcagactgcaaatgaggaatctaaagcggttacaaaagcaagggacatgaaagc 330
Query: 330 aattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaa 389
|||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 331 aattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggcaaa 390
Query: 390 gacaaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtgg 449
|||||||||||||||| |||||| ||||||| |||| || || ||||| |||||||||||
Sbjct: 391 gacaaaagttgatgaattggaaaaagataacttatcaaacagacaaaagcctggatgtgg 450
Query: 450 aaagggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaatt 509
|| || ||||| || || ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 451 gaaaggatctgcggtagatcgatcaagagaacagactactggagcagtgaaaaagaaatt 510
Query: 510 gaaggaacggatggatgattttcagaccttgagagaagcaatcaggcaagagtatcgaga 569
|||||| || ||||||||||||||| ||||||||||||||| |||| |||||||| ||
Sbjct: 511 gaaggagcgcatggatgattttcaggttttgagagaagcaatccggcaggagtatcgtga 570
Query: 570 ggttgtcgaaagaagggtttttactgtaactggtaatcgtcctgatgaagagacaattga 629
|| || ||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||
Sbjct: 571 tgtcgttgaaagaagggtgtttacagtaactggtagtcgtcctgatgaagagacagttga 630
Query: 630 tgacttgatagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcaggg 689
| || |||||||| |||| |||||||||||| ||| |||| ||||||||||| |||||
Sbjct: 631 caatttaatagagactggaagaagtgagcaaattttccaagaagctatccaacagcaggg 690
Query: 690 aagaggccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaaggga 749
||||||||| ||||| ||||||||||| || |||||||| || || ||||||||||| ||
Sbjct: 691 aagaggccaaatactggacactgttgcagagatacaggaacgtcacgatgctgtaagaga 750
Query: 750 tctagagaggaagcttctggagttgcaacagatattcatggacatggcagttcttgttga 809
||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||||
Sbjct: 751 tctagagaggaagcttctggagttgcagcagatattcatggatatggcagttttggttga 810
Query: 810 ggcgcaaggagacatgatcaacaacatcgagacccatgtctcgaacgccaccaaccacat 869
|| ||||||||||||||||||||||| ||||| ||||| || || || |||||||||||
Sbjct: 811 tgctcaaggagacatgatcaacaacatagagacacatgtttcaaatgctaccaaccacat 870
Query: 870 acagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaattcgaggaagtg 929
||| ||||| || || || || |||||||||||||| || |||| ||| || ||||||||
Sbjct: 871 acaacaaggcgtcagtgctctacagaacgcgaagaagctccagaagaactccaggaagtg 930
Query: 930 gatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtcgtcgcagtcat 989
||||||||||||||||||| | ||||| | ||||| ||| ||||||||||||| |||||
Sbjct: 931 gatgtgctacgccatcatcctcctgctcatcatagtggtgatcattgtcgtcgccgtcat 990
Query: 990 ccagccatggaagaaggg 1007
||||||||||||||||||
Sbjct: 991 ccagccatggaagaaggg 1008
>gb|CF335795.1|CF335795 JMT--05-J21.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--05-J21, mRNA sequence
Length = 534
Score = 373 bits (188), Expect = e-100
Identities = 379/443 (85%), Gaps = 3/443 (0%)
Strand = Plus / Plus
Query: 90 cctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctc 149
|||||||||||||||||| |||||||| ||||| ||||||||||||||| | | ||| ||
Sbjct: 95 cctcgccgccatgaacaatctcctcaccgattcgtttgagctccctcggggaggctcttc 154
Query: 150 aagagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaaga 209
|||||| | || ||||||||||||||||| |||||| |||||||||| | ||||
Sbjct: 155 aagagatggggacattgaaatgggaatgcaa---gctgatccttcagacaatctaaaagg 211
Query: 210 tttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaa 269
||||||||| ||||| || |||||||| || ||||||| |||||| | ||||| ||| |
Sbjct: 212 tttcttgaaaaaggttgacgcaattgaaagcctaattgctaagctgacgaatctcttgca 271
Query: 270 taagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagc 329
|||||| || ||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct: 272 taagcttcagactgcaaatgaggaatctaaagcggttacaaaagcaagggacatgaaagc 331
Query: 330 aattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaa 389
|||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 332 aattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggcaaa 391
Query: 390 gacaaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtgg 449
|||||||||||||||| |||||| ||||||| |||| || || ||||| |||||||||||
Sbjct: 392 gacaaaagttgatgaattggaaaaagataacttatcaaacagacaaaagcctggatgtgg 451
Query: 450 aaagggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaatt 509
|| || ||||| || || ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 452 gaaaggatctgcggtagatcgatcaagagaacagactactggagcagtgaaaaagaaatt 511
Query: 510 gaaggaacggatggatgattttc 532
|||||| || |||||||||||||
Sbjct: 512 gaaggagcgcatggatgattttc 534
>gb|AY224573.1| Oryza sativa (japonica cultivar-group) isolate 29959 syntaxin-like
protein mRNA, partial cds
Length = 471
Score = 373 bits (188), Expect = e-100
Identities = 380/445 (85%), Gaps = 3/445 (0%)
Strand = Plus / Plus
Query: 90 cctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctc 149
|||||||||||||||||| |||||||| ||||| ||||||||||||||| | | ||| ||
Sbjct: 30 cctcgccgccatgaacaatctcctcaccgattcgtttgagctccctcggggaggctcttc 89
Query: 150 aagagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaaga 209
|||||| | || ||||||||||||||||| |||||| |||||||||| | ||||
Sbjct: 90 aagagatggggacattgaaatgggaatgcaa---gctgatccttcagacaatctaaaagg 146
Query: 210 tttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaa 269
||||||||| ||||| || |||||||| || ||||||| |||||| | ||||| ||| |
Sbjct: 147 tttcttgaaaaaggttgacgcaattgaaagcctaattgctaagctgacgaatctcttgca 206
Query: 270 taagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagc 329
|||||| || ||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct: 207 taagcttcagactgcaaatgaggaatctaaagcggttacaaaagcaagggacatgaaagc 266
Query: 330 aattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggcaaa 389
|||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 267 aattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggcaaa 326
Query: 390 gacaaaagttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgtgg 449
||| |||||||||||| |||||| ||||||| |||| || || ||||| |||||||||||
Sbjct: 327 gacmaaagttgatgaattggaaaaagataacttatcaaacagacaaaagcctggatgtgg 386
Query: 450 aaagggttctgccgtggaccgatcaagagagcaaactactggagcagtgaaaaagaaatt 509
|| || ||||| || || ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 387 gaaaggatctgcggtagatcgatcaagagaacagactactggagcagtgaaaaagaaatt 446
Query: 510 gaaggaacggatggatgattttcag 534
|||||| || |||||||||||||||
Sbjct: 447 gaaggagcgcatggatgattttcag 471
>gb|C93475.1|C93475 C93475 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C51754_2A, mRNA sequence
Length = 450
Score = 248 bits (125), Expect = 6e-063
Identities = 309/369 (83%), Gaps = 5/369 (1%)
Strand = Plus / Plus
Query: 90 cctcgccgccatgaacaacctcctcacggattcctttgagctccctcggcgggactcctc 149
|||||||||||||||||| |||||||| ||||| ||||||||||||||| | | ||| ||
Sbjct: 58 cctcgccgccatgaacaatctcctcaccgattcgtttgagctccctcggggaggctcttc 117
Query: 150 aagagacgcagatattgaaatgggaatgcatcaggctgatgcttcagacaacttgaaaga 209
|||||| | || ||||||||||||||||| |||||| |||||||||| | ||||
Sbjct: 118 aagagatggggacattgaaatgggaatgcaa---gctgatccttcagacaatctaaaagg 174
Query: 210 tttcttgaagaaggtcgatgcaattgagagtataattgcaaagctgtcaaatctattgaa 269
||||||||| ||||| || |||||| | || ||||||| |||||| | ||||| ||| |
Sbjct: 175 tttcttgaaaaaggttgacgcaattnaaagcctaattgctaagctgacgaatctcttgca 234
Query: 270 taagctccanactgcaaatgaggaatccnaagnagttacaaaagcaagttccatgaaagc 329
|||||| || ||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct: 235 taagcttcagactgcaaatgaggaatctaaagcggttacaaaagcaagggacatgaaagc 294
Query: 330 aattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggc-aa 388
|||||| ||| |||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct: 295 aattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggcaaa 354
Query: 389 agacaaaag-ttgatgaactggaaagagataacctatcgaataggcaaaaacctggatgt 447
|| |||||| |||||||| |||||| ||||||| |||| | || ||||| |||||||||
Sbjct: 355 agncaaaagtttgatgaattggaaaaagataacttatcaaccagncaaaagcctggatgt 414
Query: 448 ggaaagggt 456
|| ||||||
Sbjct: 415 gggaagggt 423
>dbj|AK107096.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H07, full
insert sequence
Length = 1903
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 859 accaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaat 918
|||||||||||||| ||||| || || || || |||||||||||||| || |||| |||
Sbjct: 1797 accaaccacatacaacaaggcgtcagtgctctacagaacgcgaagaagctccagaagaac 1738
Query: 919 tcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtc 978
|| ||||||||||||||||||||||||||| | ||||| | ||||| ||| ||||||||
Sbjct: 1737 tccaggaagtggatgtgctacgccatcatcctcctgctcatcatagtggtgatcattgtc 1678
Query: 979 gtcgcagtcatccagccatggaagaaggg 1007
||||| |||||||||||||||||||||||
Sbjct: 1677 gtcgccgtcatccagccatggaagaaggg 1649
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0039H02
Length = 169162
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 859 accaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaat 918
|||||||||||||| ||||| || || || || |||||||||||||| || |||| |||
Sbjct: 16861 accaaccacatacaacaaggcgtcagtgctctacagaacgcgaagaagctccagaagaac 16802
Query: 919 tcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtc 978
|| ||||||||||||||||||||||||||| | ||||| | ||||| ||| ||||||||
Sbjct: 16801 tccaggaagtggatgtgctacgccatcatcctcctgctcatcatagtggtgatcattgtc 16742
Query: 979 gtcgcagtcatccagccatggaagaaggg 1007
||||| |||||||||||||||||||||||
Sbjct: 16741 gtcgccgtcatccagccatggaagaaggg 16713
Score = 109 bits (55), Expect = 3e-021
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggc 386
||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 18727 agcaattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggc 18668
Query: 387 aaagacaaaagttgatgaactggaaagagat 417
||||||||||||||||||| |||||| ||||
Sbjct: 18667 aaagacaaaagttgatgaattggaaaaagat 18637
Score = 105 bits (53), Expect = 5e-020
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 696 ccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatctaga 755
||||||||| ||||||||||| || |||||||| || || ||||||||||| ||||||||
Sbjct: 17234 ccagatactggacactgttgcagagatacaggaacgtcacgatgctgtaagagatctaga 17175
Query: 756 gaggaagcttctggagttgca 776
|||||||||||||||||||||
Sbjct: 17174 gaggaagcttctggagttgca 17154
Score = 95.6 bits (48), Expect = 5e-017
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 538 ttgagagaagcaatcaggcaagagtatcgagaggttgtcgaaagaagggtttttactgta 597
||||||||||||||| |||| |||||||| || || || ||||||||||| ||||| |||
Sbjct: 17658 ttgagagaagcaatccggcaggagtatcgtgatgtcgttgaaagaagggtgtttacagta 17599
Query: 598 actggtaatcgtcctgatgaagag 621
||||||| ||||||||||||||||
Sbjct: 17598 actggtagtcgtcctgatgaagag 17575
Score = 83.8 bits (42), Expect = 2e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 779 agatattcatggacatggcagttcttgttgaggcgcaaggagacatgatcaacaacatcg 838
||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||||| |
Sbjct: 17044 agatattcatggatatggcagttttggttgatgctcaaggagacatgatcaacaacatag 16985
Query: 839 agacccatgt 848
|||| |||||
Sbjct: 16984 agacacatgt 16975
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 637 atagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcagggaagaggc 696
|||||||| |||| |||||||||||| ||| |||| ||||||||||| ||||||||||||
Sbjct: 17414 atagagactggaagaagtgagcaaattttccaagaagctatccaacagcagggaagaggc 17355
Query: 697 ca 698
||
Sbjct: 17354 ca 17353
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 491 gagcagtgaaaaagaaattgaaggaacggatggatgattttcag 534
||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 18120 gagcagtgaaaaagaaattgaaggagcgcatggatgattttcag 18077
Score = 60.0 bits (30), Expect = 3e-006
Identities = 89/108 (82%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 117 ggattcctttgagctccctcggcgggactcctcaagagacgcagatattgaaatgggaat 176
|||||| ||||||||||||||| | | ||| |||||||| | || ||||||||||||||
Sbjct: 19308 ggattcgtttgagctccctcggggaggctcttcaagagatggggacattgaaatgggaat 19249
Query: 177 gcatcaggctgatgcttcagacaacttgaaagatttcttgaagaaggt 224
| || |||||| |||||||||| | |||| ||||||||| |||||
Sbjct: 19248 g---caagctgatccttcagacaatctaaaaggtttcttgaaaaaggt 19204
Score = 48.1 bits (24), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 280 actgcaaatgaggaatccnaagnagttacaaaagcaag 317
||||||||||||||||| ||| ||||||||||||||
Sbjct: 18876 actgcaaatgaggaatctaaagcggttacaaaagcaag 18839
Score = 46.1 bits (23), Expect = 0.044
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 90 cctcgccgccatgaacaacctcctcac 116
|||||||||||||||||| ||||||||
Sbjct: 20342 cctcgccgccatgaacaatctcctcac 20316
Score = 46.1 bits (23), Expect = 0.044
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 433 caaaaacctggatgtggaaagggttctgccgtggaccgatcaagagagcaaactactgg 491
||||| ||||||||||| || || ||||| || || ||||||||||| || ||||||||
Sbjct: 18274 caaaagcctggatgtgggaaaggatctgcggtagatcgatcaagagaacagactactgg 18216
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0428D12
Length = 141678
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 859 accaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaat 918
|||||||||||||| ||||| || || || || |||||||||||||| || |||| |||
Sbjct: 118731 accaaccacatacaacaaggcgtcagtgctctacagaacgcgaagaagctccagaagaac 118672
Query: 919 tcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtc 978
|| ||||||||||||||||||||||||||| | ||||| | ||||| ||| ||||||||
Sbjct: 118671 tccaggaagtggatgtgctacgccatcatcctcctgctcatcatagtggtgatcattgtc 118612
Query: 979 gtcgcagtcatccagccatggaagaaggg 1007
||||| |||||||||||||||||||||||
Sbjct: 118611 gtcgccgtcatccagccatggaagaaggg 118583
Score = 109 bits (55), Expect = 3e-021
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggc 386
||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 120597 agcaattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggc 120538
Query: 387 aaagacaaaagttgatgaactggaaagagat 417
||||||||||||||||||| |||||| ||||
Sbjct: 120537 aaagacaaaagttgatgaattggaaaaagat 120507
Score = 105 bits (53), Expect = 5e-020
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 696 ccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatctaga 755
||||||||| ||||||||||| || |||||||| || || ||||||||||| ||||||||
Sbjct: 119104 ccagatactggacactgttgcagagatacaggaacgtcacgatgctgtaagagatctaga 119045
Query: 756 gaggaagcttctggagttgca 776
|||||||||||||||||||||
Sbjct: 119044 gaggaagcttctggagttgca 119024
Score = 95.6 bits (48), Expect = 5e-017
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 538 ttgagagaagcaatcaggcaagagtatcgagaggttgtcgaaagaagggtttttactgta 597
||||||||||||||| |||| |||||||| || || || ||||||||||| ||||| |||
Sbjct: 119528 ttgagagaagcaatccggcaggagtatcgtgatgtcgttgaaagaagggtgtttacagta 119469
Query: 598 actggtaatcgtcctgatgaagag 621
||||||| ||||||||||||||||
Sbjct: 119468 actggtagtcgtcctgatgaagag 119445
Score = 83.8 bits (42), Expect = 2e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 779 agatattcatggacatggcagttcttgttgaggcgcaaggagacatgatcaacaacatcg 838
||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||||| |
Sbjct: 118914 agatattcatggatatggcagttttggttgatgctcaaggagacatgatcaacaacatag 118855
Query: 839 agacccatgt 848
|||| |||||
Sbjct: 118854 agacacatgt 118845
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 637 atagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcagggaagaggc 696
|||||||| |||| |||||||||||| ||| |||| ||||||||||| ||||||||||||
Sbjct: 119284 atagagactggaagaagtgagcaaattttccaagaagctatccaacagcagggaagaggc 119225
Query: 697 ca 698
||
Sbjct: 119224 ca 119223
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 491 gagcagtgaaaaagaaattgaaggaacggatggatgattttcag 534
||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 119990 gagcagtgaaaaagaaattgaaggagcgcatggatgattttcag 119947
Score = 60.0 bits (30), Expect = 3e-006
Identities = 89/108 (82%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 117 ggattcctttgagctccctcggcgggactcctcaagagacgcagatattgaaatgggaat 176
|||||| ||||||||||||||| | | ||| |||||||| | || ||||||||||||||
Sbjct: 121178 ggattcgtttgagctccctcggggaggctcttcaagagatggggacattgaaatgggaat 121119
Query: 177 gcatcaggctgatgcttcagacaacttgaaagatttcttgaagaaggt 224
| || |||||| |||||||||| | |||| ||||||||| |||||
Sbjct: 121118 g---caagctgatccttcagacaatctaaaaggtttcttgaaaaaggt 121074
Score = 48.1 bits (24), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 280 actgcaaatgaggaatccnaagnagttacaaaagcaag 317
||||||||||||||||| ||| ||||||||||||||
Sbjct: 120746 actgcaaatgaggaatctaaagcggttacaaaagcaag 120709
Score = 46.1 bits (23), Expect = 0.044
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 90 cctcgccgccatgaacaacctcctcac 116
|||||||||||||||||| ||||||||
Sbjct: 122212 cctcgccgccatgaacaatctcctcac 122186
Score = 46.1 bits (23), Expect = 0.044
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 433 caaaaacctggatgtggaaagggttctgccgtggaccgatcaagagagcaaactactgg 491
||||| ||||||||||| || || ||||| || || ||||||||||| || ||||||||
Sbjct: 120144 caaaagcctggatgtgggaaaggatctgcggtagatcgatcaagagaacagactactgg 120086
>gb|AACV01015236.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015236, whole
genome shotgun sequence
Length = 25512
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 859 accaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaat 918
|||||||||||||| ||||| || || || || |||||||||||||| || |||| |||
Sbjct: 22275 accaaccacatacaacaaggcgtcagtgctctacagaacgcgaagaagctccagaagaac 22216
Query: 919 tcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtc 978
|| ||||||||||||||||||||||||||| | ||||| | ||||| ||| ||||||||
Sbjct: 22215 tccaggaagtggatgtgctacgccatcatcctcctgctcatcatagtggtgatcattgtc 22156
Query: 979 gtcgcagtcatccagccatggaagaaggg 1007
||||| |||||||||||||||||||||||
Sbjct: 22155 gtcgccgtcatccagccatggaagaaggg 22127
Score = 109 bits (55), Expect = 3e-021
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggc 386
||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 24141 agcaattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggc 24082
Query: 387 aaagacaaaagttgatgaactggaaagagat 417
||||||||||||||||||| |||||| ||||
Sbjct: 24081 aaagacaaaagttgatgaattggaaaaagat 24051
Score = 105 bits (53), Expect = 5e-020
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 696 ccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatctaga 755
||||||||| ||||||||||| || |||||||| || || ||||||||||| ||||||||
Sbjct: 22648 ccagatactggacactgttgcagagatacaggaacgtcacgatgctgtaagagatctaga 22589
Query: 756 gaggaagcttctggagttgca 776
|||||||||||||||||||||
Sbjct: 22588 gaggaagcttctggagttgca 22568
Score = 95.6 bits (48), Expect = 5e-017
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 538 ttgagagaagcaatcaggcaagagtatcgagaggttgtcgaaagaagggtttttactgta 597
||||||||||||||| |||| |||||||| || || || ||||||||||| ||||| |||
Sbjct: 23072 ttgagagaagcaatccggcaggagtatcgtgatgtcgttgaaagaagggtgtttacagta 23013
Query: 598 actggtaatcgtcctgatgaagag 621
||||||| ||||||||||||||||
Sbjct: 23012 actggtagtcgtcctgatgaagag 22989
Score = 83.8 bits (42), Expect = 2e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 779 agatattcatggacatggcagttcttgttgaggcgcaaggagacatgatcaacaacatcg 838
||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||||| |
Sbjct: 22458 agatattcatggatatggcagttttggttgatgctcaaggagacatgatcaacaacatag 22399
Query: 839 agacccatgt 848
|||| |||||
Sbjct: 22398 agacacatgt 22389
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 637 atagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcagggaagaggc 696
|||||||| |||| |||||||||||| ||| |||| ||||||||||| ||||||||||||
Sbjct: 22828 atagagactggaagaagtgagcaaattttccaagaagctatccaacagcagggaagaggc 22769
Query: 697 ca 698
||
Sbjct: 22768 ca 22767
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 491 gagcagtgaaaaagaaattgaaggaacggatggatgattttcag 534
||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 23534 gagcagtgaaaaagaaattgaaggagcgcatggatgattttcag 23491
Score = 60.0 bits (30), Expect = 3e-006
Identities = 89/108 (82%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 117 ggattcctttgagctccctcggcgggactcctcaagagacgcagatattgaaatgggaat 176
|||||| ||||||||||||||| | | ||| |||||||| | || ||||||||||||||
Sbjct: 24722 ggattcgtttgagctccctcggggaggctcttcaagagatggggacattgaaatgggaat 24663
Query: 177 gcatcaggctgatgcttcagacaacttgaaagatttcttgaagaaggt 224
| || |||||| |||||||||| | |||| ||||||||| |||||
Sbjct: 24662 g---caagctgatccttcagacaatctaaaaggtttcttgaaaaaggt 24618
Score = 48.1 bits (24), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 280 actgcaaatgaggaatccnaagnagttacaaaagcaag 317
||||||||||||||||| ||| ||||||||||||||
Sbjct: 24290 actgcaaatgaggaatctaaagcggttacaaaagcaag 24253
Score = 46.1 bits (23), Expect = 0.044
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 433 caaaaacctggatgtggaaagggttctgccgtggaccgatcaagagagcaaactactgg 491
||||| ||||||||||| || || ||||| || || ||||||||||| || ||||||||
Sbjct: 23688 caaaagcctggatgtgggaaaggatctgcggtagatcgatcaagagaacagactactgg 23630
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 859 accaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaat 918
|||||||||||||| ||||| || || || || |||||||||||||| || |||| |||
Sbjct: 3434983 accaaccacatacaacaaggcgtcagtgctctacagaacgcgaagaagctccagaagaac 3434924
Query: 919 tcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtc 978
|| ||||||||||||||||||||||||||| | ||||| | ||||| ||| ||||||||
Sbjct: 3434923 tccaggaagtggatgtgctacgccatcatcctcctgctcatcatagtggtgatcattgtc 3434864
Query: 979 gtcgcagtcatccagccatggaagaaggg 1007
||||| |||||||||||||||||||||||
Sbjct: 3434863 gtcgccgtcatccagccatggaagaaggg 3434835
Score = 109 bits (55), Expect = 3e-021
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggc 386
||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 3436849 agcaattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggc 3436790
Query: 387 aaagacaaaagttgatgaactggaaagagat 417
||||||||||||||||||| |||||| ||||
Sbjct: 3436789 aaagacaaaagttgatgaattggaaaaagat 3436759
Score = 105 bits (53), Expect = 5e-020
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 696 ccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatctaga 755
||||||||| ||||||||||| || |||||||| || || ||||||||||| ||||||||
Sbjct: 3435356 ccagatactggacactgttgcagagatacaggaacgtcacgatgctgtaagagatctaga 3435297
Query: 756 gaggaagcttctggagttgca 776
|||||||||||||||||||||
Sbjct: 3435296 gaggaagcttctggagttgca 3435276
Score = 95.6 bits (48), Expect = 5e-017
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 538 ttgagagaagcaatcaggcaagagtatcgagaggttgtcgaaagaagggtttttactgta 597
||||||||||||||| |||| |||||||| || || || ||||||||||| ||||| |||
Sbjct: 3435780 ttgagagaagcaatccggcaggagtatcgtgatgtcgttgaaagaagggtgtttacagta 3435721
Query: 598 actggtaatcgtcctgatgaagag 621
||||||| ||||||||||||||||
Sbjct: 3435720 actggtagtcgtcctgatgaagag 3435697
Score = 83.8 bits (42), Expect = 2e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 779 agatattcatggacatggcagttcttgttgaggcgcaaggagacatgatcaacaacatcg 838
||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||||| |
Sbjct: 3435166 agatattcatggatatggcagttttggttgatgctcaaggagacatgatcaacaacatag 3435107
Query: 839 agacccatgt 848
|||| |||||
Sbjct: 3435106 agacacatgt 3435097
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 637 atagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcagggaagaggc 696
|||||||| |||| |||||||||||| ||| |||| ||||||||||| ||||||||||||
Sbjct: 3435536 atagagactggaagaagtgagcaaattttccaagaagctatccaacagcagggaagaggc 3435477
Query: 697 ca 698
||
Sbjct: 3435476 ca 3435475
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 491 gagcagtgaaaaagaaattgaaggaacggatggatgattttcag 534
||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 3436242 gagcagtgaaaaagaaattgaaggagcgcatggatgattttcag 3436199
Score = 60.0 bits (30), Expect = 3e-006
Identities = 89/108 (82%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 117 ggattcctttgagctccctcggcgggactcctcaagagacgcagatattgaaatgggaat 176
|||||| ||||||||||||||| | | ||| |||||||| | || ||||||||||||||
Sbjct: 3437430 ggattcgtttgagctccctcggggaggctcttcaagagatggggacattgaaatgggaat 3437371
Query: 177 gcatcaggctgatgcttcagacaacttgaaagatttcttgaagaaggt 224
| || |||||| |||||||||| | |||| ||||||||| |||||
Sbjct: 3437370 g---caagctgatccttcagacaatctaaaaggtttcttgaaaaaggt 3437326
Score = 48.1 bits (24), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 280 actgcaaatgaggaatccnaagnagttacaaaagcaag 317
||||||||||||||||| ||| ||||||||||||||
Sbjct: 3436998 actgcaaatgaggaatctaaagcggttacaaaagcaag 3436961
Score = 46.1 bits (23), Expect = 0.044
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 90 cctcgccgccatgaacaacctcctcac 116
|||||||||||||||||| ||||||||
Sbjct: 3438464 cctcgccgccatgaacaatctcctcac 3438438
Score = 46.1 bits (23), Expect = 0.044
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 433 caaaaacctggatgtggaaagggttctgccgtggaccgatcaagagagcaaactactgg 491
||||| ||||||||||| || || ||||| || || ||||||||||| || ||||||||
Sbjct: 3436396 caaaagcctggatgtgggaaaggatctgcggtagatcgatcaagagaacagactactgg 3436338
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057
genomic scaffold, whole genome shotgun sequence
Length = 3236776
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 859 accaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaat 918
|||||||||||||| ||||| || || || || |||||||||||||| || |||| |||
Sbjct: 544217 accaaccacatacaacaaggcgtcagtgctctacagaacgcgaagaagctccagaagaac 544158
Query: 919 tcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtc 978
|| ||||||||||||||||||||||||||| | ||||| | ||||| ||| ||||||||
Sbjct: 544157 tccaggaagtggatgtgctacgccatcatcctcctgctcatcatagtggtgatcattgtc 544098
Query: 979 gtcgcagtcatccagccatggaagaaggg 1007
||||| |||||||||||||||||||||||
Sbjct: 544097 gtcgccgtcatccagccatggaagaaggg 544069
Score = 109 bits (55), Expect = 3e-021
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggc 386
||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 546083 agcaattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggc 546024
Query: 387 aaagacaaaagttgatgaactggaaagagat 417
||||||||||||||||||| |||||| ||||
Sbjct: 546023 aaagacaaaagttgatgaattggaaaaagat 545993
Score = 105 bits (53), Expect = 5e-020
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 696 ccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatctaga 755
||||||||| ||||||||||| || |||||||| || || ||||||||||| ||||||||
Sbjct: 544590 ccagatactggacactgttgcagagatacaggaacgtcacgatgctgtaagagatctaga 544531
Query: 756 gaggaagcttctggagttgca 776
|||||||||||||||||||||
Sbjct: 544530 gaggaagcttctggagttgca 544510
Score = 95.6 bits (48), Expect = 5e-017
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 538 ttgagagaagcaatcaggcaagagtatcgagaggttgtcgaaagaagggtttttactgta 597
||||||||||||||| |||| |||||||| || || || ||||||||||| ||||| |||
Sbjct: 545014 ttgagagaagcaatccggcaggagtatcgtgatgtcgttgaaagaagggtgtttacagta 544955
Query: 598 actggtaatcgtcctgatgaagag 621
||||||| ||||||||||||||||
Sbjct: 544954 actggtagtcgtcctgatgaagag 544931
Score = 83.8 bits (42), Expect = 2e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 779 agatattcatggacatggcagttcttgttgaggcgcaaggagacatgatcaacaacatcg 838
||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||||| |
Sbjct: 544400 agatattcatggatatggcagttttggttgatgctcaaggagacatgatcaacaacatag 544341
Query: 839 agacccatgt 848
|||| |||||
Sbjct: 544340 agacacatgt 544331
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 637 atagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcagggaagaggc 696
|||||||| |||| |||||||||||| ||| |||| ||||||||||| ||||||||||||
Sbjct: 544770 atagagactggaagaagtgagcaaattttccaagaagctatccaacagcagggaagaggc 544711
Query: 697 ca 698
||
Sbjct: 544710 ca 544709
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 491 gagcagtgaaaaagaaattgaaggaacggatggatgattttcag 534
||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 545476 gagcagtgaaaaagaaattgaaggagcgcatggatgattttcag 545433
Score = 60.0 bits (30), Expect = 3e-006
Identities = 89/108 (82%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 117 ggattcctttgagctccctcggcgggactcctcaagagacgcagatattgaaatgggaat 176
|||||| ||||||||||||||| | | ||| |||||||| | || ||||||||||||||
Sbjct: 546664 ggattcgtttgagctccctcggggaggctcttcaagagatggggacattgaaatgggaat 546605
Query: 177 gcatcaggctgatgcttcagacaacttgaaagatttcttgaagaaggt 224
| || |||||| |||||||||| | |||| ||||||||| |||||
Sbjct: 546604 g---caagctgatccttcagacaatctaaaaggtttcttgaaaaaggt 546560
Score = 48.1 bits (24), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 280 actgcaaatgaggaatccnaagnagttacaaaagcaag 317
||||||||||||||||| ||| ||||||||||||||
Sbjct: 546232 actgcaaatgaggaatctaaagcggttacaaaagcaag 546195
Score = 46.1 bits (23), Expect = 0.044
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 90 cctcgccgccatgaacaacctcctcac 116
|||||||||||||||||| ||||||||
Sbjct: 547785 cctcgccgccatgaacaatctcctcac 547759
Score = 46.1 bits (23), Expect = 0.044
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 433 caaaaacctggatgtggaaagggttctgccgtggaccgatcaagagagcaaactactgg 491
||||| ||||||||||| || || ||||| || || ||||||||||| || ||||||||
Sbjct: 545630 caaaagcctggatgtgggaaaggatctgcggtagatcgatcaagagaacagactactgg 545572
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 859 accaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaat 918
|||||||||||||| ||||| || || || || |||||||||||||| || |||| |||
Sbjct: 3360966 accaaccacatacaacaaggcgtcagtgctctacagaacgcgaagaagctccagaagaac 3360907
Query: 919 tcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtc 978
|| ||||||||||||||||||||||||||| | ||||| | ||||| ||| ||||||||
Sbjct: 3360906 tccaggaagtggatgtgctacgccatcatcctcctgctcatcatagtggtgatcattgtc 3360847
Query: 979 gtcgcagtcatccagccatggaagaaggg 1007
||||| |||||||||||||||||||||||
Sbjct: 3360846 gtcgccgtcatccagccatggaagaaggg 3360818
Score = 109 bits (55), Expect = 3e-021
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggc 386
||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 3362832 agcaattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggc 3362773
Query: 387 aaagacaaaagttgatgaactggaaagagat 417
||||||||||||||||||| |||||| ||||
Sbjct: 3362772 aaagacaaaagttgatgaattggaaaaagat 3362742
Score = 105 bits (53), Expect = 5e-020
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 696 ccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatctaga 755
||||||||| ||||||||||| || |||||||| || || ||||||||||| ||||||||
Sbjct: 3361339 ccagatactggacactgttgcagagatacaggaacgtcacgatgctgtaagagatctaga 3361280
Query: 756 gaggaagcttctggagttgca 776
|||||||||||||||||||||
Sbjct: 3361279 gaggaagcttctggagttgca 3361259
Score = 95.6 bits (48), Expect = 5e-017
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 538 ttgagagaagcaatcaggcaagagtatcgagaggttgtcgaaagaagggtttttactgta 597
||||||||||||||| |||| |||||||| || || || ||||||||||| ||||| |||
Sbjct: 3361763 ttgagagaagcaatccggcaggagtatcgtgatgtcgttgaaagaagggtgtttacagta 3361704
Query: 598 actggtaatcgtcctgatgaagag 621
||||||| ||||||||||||||||
Sbjct: 3361703 actggtagtcgtcctgatgaagag 3361680
Score = 83.8 bits (42), Expect = 2e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 779 agatattcatggacatggcagttcttgttgaggcgcaaggagacatgatcaacaacatcg 838
||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||||| |
Sbjct: 3361149 agatattcatggatatggcagttttggttgatgctcaaggagacatgatcaacaacatag 3361090
Query: 839 agacccatgt 848
|||| |||||
Sbjct: 3361089 agacacatgt 3361080
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 637 atagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcagggaagaggc 696
|||||||| |||| |||||||||||| ||| |||| ||||||||||| ||||||||||||
Sbjct: 3361519 atagagactggaagaagtgagcaaattttccaagaagctatccaacagcagggaagaggc 3361460
Query: 697 ca 698
||
Sbjct: 3361459 ca 3361458
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 491 gagcagtgaaaaagaaattgaaggaacggatggatgattttcag 534
||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 3362225 gagcagtgaaaaagaaattgaaggagcgcatggatgattttcag 3362182
Score = 60.0 bits (30), Expect = 3e-006
Identities = 89/108 (82%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 117 ggattcctttgagctccctcggcgggactcctcaagagacgcagatattgaaatgggaat 176
|||||| ||||||||||||||| | | ||| |||||||| | || ||||||||||||||
Sbjct: 3363413 ggattcgtttgagctccctcggggaggctcttcaagagatggggacattgaaatgggaat 3363354
Query: 177 gcatcaggctgatgcttcagacaacttgaaagatttcttgaagaaggt 224
| || |||||| |||||||||| | |||| ||||||||| |||||
Sbjct: 3363353 g---caagctgatccttcagacaatctaaaaggtttcttgaaaaaggt 3363309
Score = 48.1 bits (24), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 280 actgcaaatgaggaatccnaagnagttacaaaagcaag 317
||||||||||||||||| ||| ||||||||||||||
Sbjct: 3362981 actgcaaatgaggaatctaaagcggttacaaaagcaag 3362944
Score = 46.1 bits (23), Expect = 0.044
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 90 cctcgccgccatgaacaacctcctcac 116
|||||||||||||||||| ||||||||
Sbjct: 3364534 cctcgccgccatgaacaatctcctcac 3364508
Score = 46.1 bits (23), Expect = 0.044
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 433 caaaaacctggatgtggaaagggttctgccgtggaccgatcaagagagcaaactactgg 491
||||| ||||||||||| || || ||||| || || ||||||||||| || ||||||||
Sbjct: 3362379 caaaagcctggatgtgggaaaggatctgcggtagatcgatcaagagaacagactactgg 3362321
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 338 agcggatggagaaagatattgatgaagtggggaaaatt 375
|||| |||||||||||||| ||||||| |||||||||
Sbjct: 19538799 agcgcatggagaaagatatcaatgaagttgggaaaatt 19538836
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 859 accaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaat 918
|||||||||||||| ||||| || || || || |||||||||||||| || |||| |||
Sbjct: 3478911 accaaccacatacaacaaggcgtcagtgctctacagaacgcgaagaagctccagaagaac 3478852
Query: 919 tcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtc 978
|| ||||||||||||||||||||||||||| | ||||| | ||||| ||| ||||||||
Sbjct: 3478851 tccaggaagtggatgtgctacgccatcatcctcctgctcatcatagtggtgatcattgtc 3478792
Query: 979 gtcgcagtcatccagccatggaagaaggg 1007
||||| |||||||||||||||||||||||
Sbjct: 3478791 gtcgccgtcatccagccatggaagaaggg 3478763
Score = 109 bits (55), Expect = 3e-021
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggc 386
||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 3480777 agcaattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggc 3480718
Query: 387 aaagacaaaagttgatgaactggaaagagat 417
||||||||||||||||||| |||||| ||||
Sbjct: 3480717 aaagacaaaagttgatgaattggaaaaagat 3480687
Score = 105 bits (53), Expect = 5e-020
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 696 ccagatactagacactgttgctgaaatacaggagcgacatgatgctgtaagggatctaga 755
||||||||| ||||||||||| || |||||||| || || ||||||||||| ||||||||
Sbjct: 3479284 ccagatactggacactgttgcagagatacaggaacgtcacgatgctgtaagagatctaga 3479225
Query: 756 gaggaagcttctggagttgca 776
|||||||||||||||||||||
Sbjct: 3479224 gaggaagcttctggagttgca 3479204
Score = 95.6 bits (48), Expect = 5e-017
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 538 ttgagagaagcaatcaggcaagagtatcgagaggttgtcgaaagaagggtttttactgta 597
||||||||||||||| |||| |||||||| || || || ||||||||||| ||||| |||
Sbjct: 3479708 ttgagagaagcaatccggcaggagtatcgtgatgtcgttgaaagaagggtgtttacagta 3479649
Query: 598 actggtaatcgtcctgatgaagag 621
||||||| ||||||||||||||||
Sbjct: 3479648 actggtagtcgtcctgatgaagag 3479625
Score = 83.8 bits (42), Expect = 2e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 779 agatattcatggacatggcagttcttgttgaggcgcaaggagacatgatcaacaacatcg 838
||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||||| |
Sbjct: 3479094 agatattcatggatatggcagttttggttgatgctcaaggagacatgatcaacaacatag 3479035
Query: 839 agacccatgt 848
|||| |||||
Sbjct: 3479034 agacacatgt 3479025
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 637 atagagaccggaaaaagtgagcaaatattcaaagatgctatccaacatcagggaagaggc 696
|||||||| |||| |||||||||||| ||| |||| ||||||||||| ||||||||||||
Sbjct: 3479464 atagagactggaagaagtgagcaaattttccaagaagctatccaacagcagggaagaggc 3479405
Query: 697 ca 698
||
Sbjct: 3479404 ca 3479403
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 491 gagcagtgaaaaagaaattgaaggaacggatggatgattttcag 534
||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 3480170 gagcagtgaaaaagaaattgaaggagcgcatggatgattttcag 3480127
Score = 60.0 bits (30), Expect = 3e-006
Identities = 89/108 (82%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 117 ggattcctttgagctccctcggcgggactcctcaagagacgcagatattgaaatgggaat 176
|||||| ||||||||||||||| | | ||| |||||||| | || ||||||||||||||
Sbjct: 3481358 ggattcgtttgagctccctcggggaggctcttcaagagatggggacattgaaatgggaat 3481299
Query: 177 gcatcaggctgatgcttcagacaacttgaaagatttcttgaagaaggt 224
| || |||||| |||||||||| | |||| ||||||||| |||||
Sbjct: 3481298 g---caagctgatccttcagacaatctaaaaggtttcttgaaaaaggt 3481254
Score = 48.1 bits (24), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 280 actgcaaatgaggaatccnaagnagttacaaaagcaag 317
||||||||||||||||| ||| ||||||||||||||
Sbjct: 3480926 actgcaaatgaggaatctaaagcggttacaaaagcaag 3480889
Score = 46.1 bits (23), Expect = 0.044
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 90 cctcgccgccatgaacaacctcctcac 116
|||||||||||||||||| ||||||||
Sbjct: 3482392 cctcgccgccatgaacaatctcctcac 3482366
Score = 46.1 bits (23), Expect = 0.044
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 433 caaaaacctggatgtggaaagggttctgccgtggaccgatcaagagagcaaactactgg 491
||||| ||||||||||| || || ||||| || || ||||||||||| || ||||||||
Sbjct: 3480324 caaaagcctggatgtgggaaaggatctgcggtagatcgatcaagagaacagactactgg 3480266
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 338 agcggatggagaaagatattgatgaagtggggaaaatt 375
|||| |||||||||||||| ||||||| |||||||||
Sbjct: 20635632 agcgcatggagaaagatatcaatgaagttgggaaaatt 20635669
>gb|AQ861188.1|AQ861188 nbeb0016L11r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0016L11r, DNA sequence
Length = 460
Score = 109 bits (55), Expect = 3e-021
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggc 386
||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 264 agcaattaaacagaggatggagaaagatattgatgaagtggggaaaatcgctcgcatggc 323
Query: 387 aaagacaaaagttgatgaactggaaagagat 417
||||||||||||||||||| |||||| ||||
Sbjct: 324 aaagacaaaagttgatgaattggaaaaagat 354
Score = 48.1 bits (24), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 280 actgcaaatgaggaatccnaagnagttacaaaagcaag 317
||||||||||||||||| ||| ||||||||||||||
Sbjct: 115 actgcaaatgaggaatctaaagcggttacaaaagcaag 152
>gb|AQ687536.1|AQ687536 nbxb0075I09r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0075I09r, DNA sequence
Length = 978
Score = 101 bits (51), Expect = 9e-019
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctcctcaggc 386
||||||||| ||| |||||||||||||||||||||||||| ||||||| |||| |||
Sbjct: 316 agcaattaaacagaggatggagaaagatattgatgaagtgtggaaaatcgctcgcatggc 375
Query: 387 aaagacaaaagttgatgaactggaaagagat 417
||||||||||||||||||| |||||| ||||
Sbjct: 376 aaagacaaaagttgatgaattggaaaaagat 406
Score = 48.1 bits (24), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 280 actgcaaatgaggaatccnaagnagttacaaaagcaag 317
||||||||||||||||| ||| ||||||||||||||
Sbjct: 167 actgcaaatgaggaatctaaagcggttacaaaagcaag 204
>gb|CF324713.1|CF324713 JMT1--01-E10.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--01-E10, mRNA sequence
Length = 373
Score = 81.8 bits (41), Expect = 8e-013
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 859 accaaccacatacagcaaggtgtgagcgcgctccagaacgcgaagaaactgcagaggaat 918
|||||||||||||| ||||| || || | | ||||||||||| || || |||| |||
Sbjct: 361 accaaccacatacaacaaggggtcagtgttttacagaacgcgaaaaagctccagaagaac 302
Query: 919 tcgaggaagtggatgtgctacgccatcatcatactgctggtgatagtcgtggtcattgtc 978
|| |||||||||||||| |||||||||||| | | ||| | | ||| ||| |||||||
Sbjct: 301 tccaggaagtggatgtgttacgccatcatcctccggctcatcaaagtggtgatcattgtg 242
Query: 979 gtcgcagtcatccagccatggaagaaggg 1007
||||| ||||||||||||||||| |||||
Sbjct: 241 gtcgccgtcatccagccatggaaaaaggg 213
>gb|AQ156100.1|AQ156100 nbxb0002B08r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0002B08r, DNA sequence
Length = 654
Score = 60.0 bits (30), Expect = 3e-006
Identities = 89/108 (82%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 117 ggattcctttgagctccctcggcgggactcctcaagagacgcagatattgaaatgggaat 176
|||||| ||||||||||||||| | | ||| |||||||| | || ||||||||||||||
Sbjct: 255 ggattcgtttgagctccctcggggaggctcttcaagagatggggacattgaaatgggaat 196
Query: 177 gcatcaggctgatgcttcagacaacttgaaagatttcttgaagaaggt 224
| || |||||| |||||||||| | |||| ||||||||| |||||
Sbjct: 195 g---caagctgatccttcagacaatctaaaaggtttcttgaaaaaggt 151
>gb|AQ051571.1|AQ051571 nbxb0002cA04r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0002B07r, DNA sequence
Length = 570
Score = 60.0 bits (30), Expect = 3e-006
Identities = 89/108 (82%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 117 ggattcctttgagctccctcggcgggactcctcaagagacgcagatattgaaatgggaat 176
|||||| ||||||||||||||| | | ||| |||||||| | || ||||||||||||||
Sbjct: 255 ggattcgtttgagctccctcggggaggctcttcaagagatggggacattgaaatgggaat 196
Query: 177 gcatcaggctgatgcttcagacaacttgaaagatttcttgaagaaggt 224
| || |||||| |||||||||| | |||| ||||||||| |||||
Sbjct: 195 g---caagctgatccttcagacaatctaaaaggtttcttgaaaaaggt 151
>gb|AQ577305.1|AQ577305 nbxb0090D12f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0090D12f, DNA sequence
Length = 660
Score = 60.0 bits (30), Expect = 3e-006
Identities = 89/108 (82%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 117 ggattcctttgagctccctcggcgggactcctcaagagacgcagatattgaaatgggaat 176
|||||| ||||||||||||||| | | ||| |||||||| | || ||||||||||||||
Sbjct: 258 ggattcgtttgagctccctcggggaggctcttcaagagatggggacattgaaatgggaat 199
Query: 177 gcatcaggctgatgcttcagacaacttgaaagatttcttgaagaaggt 224
| || |||||| |||||||||| | |||| ||||||||| |||||
Sbjct: 198 g---caagctgatccttcagacaatctaaaaggtttcttgaaaaaggt 154
>gb|AQ794204.1|AQ794204 nbxb0052E12f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0052E12f, DNA sequence
Length = 425
Score = 60.0 bits (30), Expect = 3e-006
Identities = 89/108 (82%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 117 ggattcctttgagctccctcggcgggactcctcaagagacgcagatattgaaatgggaat 176
|||||| ||||||||||||||| | | ||| |||||||| | || ||||||||||||||
Sbjct: 258 ggattcgtttgagctccctcggggaggctcttcaagagatggggacattgaaatgggaat 199
Query: 177 gcatcaggctgatgcttcagacaacttgaaagatttcttgaagaaggt 224
| || |||||| |||||||||| | |||| ||||||||| |||||
Sbjct: 198 g---caagctgatccttcagacaatctaaaaggtttcttgaaaaaggt 154
>gb|AACV01015237.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015237, whole
genome shotgun sequence
Length = 9632
Score = 46.1 bits (23), Expect = 0.044
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 90 cctcgccgccatgaacaacctcctcac 116
|||||||||||||||||| ||||||||
Sbjct: 9402 cctcgccgccatgaacaatctcctcac 9428
>gb|AQ865406.1|AQ865406 nbeb0025E12f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0025E12f, DNA sequence
Length = 842
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 338 agcggatggagaaagatattgatgaagtggggaaaatt 375
|||| |||||||||||||| ||||||| |||||||||
Sbjct: 597 agcgcatggagaaagatatcaatgaagttgggaaaatt 634
>dbj|AP004990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0007H12
Length = 150881
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 338 agcggatggagaaagatattgatgaagtggggaaaatt 375
|||| |||||||||||||| ||||||| |||||||||
Sbjct: 126711 agcgcatggagaaagatatcaatgaagttgggaaaatt 126748
>gb|AACV01016438.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016438, whole
genome shotgun sequence
Length = 16303
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 338 agcggatggagaaagatattgatgaagtggggaaaatt 375
|||| |||||||||||||| ||||||| |||||||||
Sbjct: 9017 agcgcatggagaaagatatcaatgaagttgggaaaatt 9054
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 338 agcggatggagaaagatattgatgaagtggggaaaatt 375
|||| |||||||||||||| ||||||| |||||||||
Sbjct: 8248637 agcgcatggagaaagatatcaatgaagttgggaaaatt 8248674
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 338 agcggatggagaaagatattgatgaagtggggaaaatt 375
|||| |||||||||||||| ||||||| |||||||||
Sbjct: 6139360 agcgcatggagaaagatatcaatgaagttgggaaaatt 6139397
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,751,498
Number of Sequences: 438736
Number of extensions: 1751498
Number of successful extensions: 11238
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10924
Number of HSP's gapped (non-prelim): 289
length of query: 1189
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1168
effective length of database: 2,791,206,460
effective search space: 3260129145280
effective search space used: 3260129145280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)