BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012720.2.1
(1130 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK103582.1| Oryza sativa (japonica cultivar-group) cDNA... 761 0.0
ref|XM_472778.1| Oryza sativa (japonica cultivar-group), p... 761 0.0
gb|CB663531.1|CB663531 OSJNEd08J20.r OSJNEd Oryza sativa (j... 494 e-137
dbj|AB001348.1| Oryza sativa (japonica cultivar-group) gene... 167 2e-038
gb|AACV01009925.1| Oryza sativa (japonica cultivar-group) c... 167 2e-038
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 167 2e-038
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 167 2e-038
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 167 2e-038
emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromoso... 167 2e-038
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 167 2e-038
dbj|AG211653.1| Oryza sativa (japonica cultivar-group) DNA,... 107 1e-020
gb|CB649659.1|CB649659 OSJNEb13L16.r OSJNEb Oryza sativa (j... 76 5e-011
gb|CB655656.1|CB655656 OSJNEc09E12.r OSJNEc Oryza sativa (j... 76 5e-011
gb|CF311480.1|CF311480 ABF--06-L10.g1 ABF3-overexpressing t... 76 5e-011
gb|CF329626.1|CF329626 NACL--05-A07.g1 Rice callus plasmid ... 76 5e-011
dbj|AB096083.1| Oryza sativa (japonica cultivar-group) BADH... 76 5e-011
dbj|AK060461.1| Oryza sativa (japonica cultivar-group) cDNA... 76 5e-011
dbj|AK071221.1| Oryza sativa (japonica cultivar-group) cDNA... 76 5e-011
ref|XM_482470.1| Oryza sativa (japonica cultivar-group), mRNA 76 5e-011
gb|C98989.1|C98989 C98989 Rice panicle at flowering stage O... 64 2e-007
dbj|AP004463.2| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
dbj|AP005537.3| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|AACV01018493.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 60 3e-006
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|C19110.1|C19110 C19110 Rice panicle at flowering stage O... 52 7e-004
gb|CF311479.1|CF311479 ABF--06-L10.b1 ABF3-overexpressing t... 52 7e-004
gb|CF329625.1|CF329625 NACL--05-A07.b1 Rice callus plasmid ... 46 0.041
>dbj|AK103582.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133A13, full
insert sequence
Length = 1908
Score = 761 bits (384), Expect = 0.0
Identities = 703/809 (86%), Gaps = 3/809 (0%)
Strand = Plus / Minus
Query: 322 acagcttagatggaggctggtaccatccccacggttcatccgagcaatacttggtgactt 381
||||||| ||||||||| |||||||||| | |||||||| ||||| |||||||||||||
Sbjct: 1629 acagcttggatggaggccggtaccatccgtatggttcatctgagcagtacttggtgactt 1570
Query: 382 gcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctcc 441
|||| || ||| ||||||||| || ||||| | ||| |||||||| |||||||| ||||
Sbjct: 1569 gcttcacgctcaagtagttatcgaggccccactgtcctagctcccggccaaaaccactcc 1510
Query: 442 gcttgttccctccccaaggagcttgaacgaagcatggttgggaacaatttatccaaataa 501
|||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||| |
Sbjct: 1509 gcttgttccctccccatggagcttgaacaaagcatggttgcgagcaatttatccaaacga 1450
Query: 502 taccagagtgaagagcctttgaaatgcgctcacacctctcttgatcattggagatcacgg 561
|||| || || | |||||||||||||||||| ||||||||| |||||||||| ||||| |
Sbjct: 1449 tacctgactggatagcctttgaaatgcgctcgcacctctctagatcattggaaatcacag 1390
Query: 562 caccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtcctaa 621
| ||||||| ||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct: 1389 cgccagctagaccatagtgagtatcatttgcaagttctactgcttcacgctctgtcctaa 1330
Query: 622 actccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgtac 681
| || ||||| |||||||| |||||||||||||||||| |||||||||||||||| || |
Sbjct: 1329 attctttaacgcagatgaccggtccaaagacttcctctcgccaaatttgcattgatgtgc 1270
Query: 682 taacatctgttataattgtaggttcaagaaagaaccctcttctgagatgctgtggtcggc 741
|||||| ||||||||| ||||| |||| ||||||||| ||| |||| || |||||||||
Sbjct: 1269 taacatttgttataatagtaggctcaataaagaacccccttttgaggtgttgtggtcggg 1210
Query: 742 cacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaacttctttatct 801
|||| ||||| | ||||||||||||||||| |||||| || |||||||||||| |||| |
Sbjct: 1209 cacccccatatagaattgtggcaccttcacatcttgctgttgagatgaacttcattattt 1150
Query: 802 tctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtggatctg 861
| | ||||| |||||||| | ||||| ||||| ||||| ||||| || ||||||||||
Sbjct: 1149 tttgatactgcccttcactaacgactgaccccagcctgcaaccttcttctagtggatctg 1090
Query: 862 agacttttatattctttgcccatgcaaccaatctatccaagaatttctttgcaattttct 921
||| ||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 1089 agattttgatactctttgcccatgcaaccaacctatccaagaatcgctttgcaattttct 1030
Query: 922 catgcagcagtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaa 981
|||||| |||| |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 1029 catgcaaaagtagacgagaagtagcactgcagacttgaccagcgttcgcaaaacacccaa 970
Query: 982 acatggtccattcaacagctttgtcaatgtcaccaatgtcatcaaagacaataagaggac 1041
|||||| ||| ||||||||||| ||||| ||| || ||||||||||||||||||||||
Sbjct: 969 acatggcccactcaacagctttatcaatatcaaca---tcatcaaagacaataagaggac 913
Query: 1042 ttttcccaccaagctctaatgagacaggcttaaccatttgggcagctgaaatcattatcc 1101
|||| |||||||||||||| || |||||||| |||||||||| ||| | |||||||||||
Sbjct: 912 ttttgccaccaagctctaacgaaacaggcttgaccatttgggaagcagtaatcattatcc 853
Query: 1102 tcttaccagtctctgtacttccagtnaaa 1130
|||||||||| ||||| |||||||| |||
Sbjct: 852 tcttaccagtttctgtgcttccagtaaaa 824
>ref|XM_472778.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1518
Score = 761 bits (384), Expect = 0.0
Identities = 703/809 (86%), Gaps = 3/809 (0%)
Strand = Plus / Minus
Query: 322 acagcttagatggaggctggtaccatccccacggttcatccgagcaatacttggtgactt 381
||||||| ||||||||| |||||||||| | |||||||| ||||| |||||||||||||
Sbjct: 1516 acagcttggatggaggccggtaccatccgtatggttcatctgagcagtacttggtgactt 1457
Query: 382 gcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctcc 441
|||| || ||| ||||||||| || ||||| | ||| |||||||| |||||||| ||||
Sbjct: 1456 gcttcacgctcaagtagttatcgaggccccactgtcctagctcccggccaaaaccactcc 1397
Query: 442 gcttgttccctccccaaggagcttgaacgaagcatggttgggaacaatttatccaaataa 501
|||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||| |
Sbjct: 1396 gcttgttccctccccatggagcttgaacaaagcatggttgcgagcaatttatccaaacga 1337
Query: 502 taccagagtgaagagcctttgaaatgcgctcacacctctcttgatcattggagatcacgg 561
|||| || || | |||||||||||||||||| ||||||||| |||||||||| ||||| |
Sbjct: 1336 tacctgactggatagcctttgaaatgcgctcgcacctctctagatcattggaaatcacag 1277
Query: 562 caccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtcctaa 621
| ||||||| ||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct: 1276 cgccagctagaccatagtgagtatcatttgcaagttctactgcttcacgctctgtcctaa 1217
Query: 622 actccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgtac 681
| || ||||| |||||||| |||||||||||||||||| |||||||||||||||| || |
Sbjct: 1216 attctttaacgcagatgaccggtccaaagacttcctctcgccaaatttgcattgatgtgc 1157
Query: 682 taacatctgttataattgtaggttcaagaaagaaccctcttctgagatgctgtggtcggc 741
|||||| ||||||||| ||||| |||| ||||||||| ||| |||| || |||||||||
Sbjct: 1156 taacatttgttataatagtaggctcaataaagaacccccttttgaggtgttgtggtcggg 1097
Query: 742 cacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaacttctttatct 801
|||| ||||| | ||||||||||||||||| |||||| || |||||||||||| |||| |
Sbjct: 1096 cacccccatatagaattgtggcaccttcacatcttgctgttgagatgaacttcattattt 1037
Query: 802 tctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtggatctg 861
| | ||||| |||||||| | ||||| ||||| ||||| ||||| || ||||||||||
Sbjct: 1036 tttgatactgcccttcactaacgactgaccccagcctgcaaccttcttctagtggatctg 977
Query: 862 agacttttatattctttgcccatgcaaccaatctatccaagaatttctttgcaattttct 921
||| ||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 976 agattttgatactctttgcccatgcaaccaacctatccaagaatcgctttgcaattttct 917
Query: 922 catgcagcagtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaa 981
|||||| |||| |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 916 catgcaaaagtagacgagaagtagcactgcagacttgaccagcgttcgcaaaacacccaa 857
Query: 982 acatggtccattcaacagctttgtcaatgtcaccaatgtcatcaaagacaataagaggac 1041
|||||| ||| ||||||||||| ||||| ||| || ||||||||||||||||||||||
Sbjct: 856 acatggcccactcaacagctttatcaatatcaaca---tcatcaaagacaataagaggac 800
Query: 1042 ttttcccaccaagctctaatgagacaggcttaaccatttgggcagctgaaatcattatcc 1101
|||| |||||||||||||| || |||||||| |||||||||| ||| | |||||||||||
Sbjct: 799 ttttgccaccaagctctaacgaaacaggcttgaccatttgggaagcagtaatcattatcc 740
Query: 1102 tcttaccagtctctgtacttccagtnaaa 1130
|||||||||| ||||| |||||||| |||
Sbjct: 739 tcttaccagtttctgtgcttccagtaaaa 711
>gb|CB663531.1|CB663531 OSJNEd08J20.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08J20 3', mRNA sequence
Length = 862
Score = 494 bits (249), Expect = e-137
Identities = 480/557 (86%)
Strand = Plus / Plus
Query: 322 acagcttagatggaggctggtaccatccccacggttcatccgagcaatacttggtgactt 381
||||||| ||||||||| |||||||||| | |||||||| ||||| |||||||||||||
Sbjct: 286 acagcttggatggaggccggtaccatccgtatggttcatctgagcagtacttggtgactt 345
Query: 382 gcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaaaaccgctcc 441
|||| || ||| ||||||||| || ||||| | ||| |||||||| |||||||| ||||
Sbjct: 346 gcttcacgctcaagtagttatcgaggccccactgtcctagctcccggccaaaaccactcc 405
Query: 442 gcttgttccctccccaaggagcttgaacgaagcatggttgggaacaatttatccaaataa 501
|||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||| |
Sbjct: 406 gcttgttccctccccatggagcttgaacaaagcatggttgcgagcaatttatccaaacga 465
Query: 502 taccagagtgaagagcctttgaaatgcgctcacacctctcttgatcattggagatcacgg 561
|||| || || | |||||||||||||||||| ||||||||| |||||||||| ||||| |
Sbjct: 466 tacctgactggatagcctttgaaatgcgctcgcacctctctagatcattggaaatcacag 525
Query: 562 caccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtcctaa 621
| ||||||| ||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct: 526 cgccagctagaccatagtgagtatcatttgcaagttctactgcttcacgctctgtcctaa 585
Query: 622 actccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgtac 681
| || ||||| |||||||| |||||||||||||||||| |||||||||||||||| || |
Sbjct: 586 attctttaacgcagatgaccggtccaaagacttcctctcgccaaatttgcattgatgtgc 645
Query: 682 taacatctgttataattgtaggttcaagaaagaaccctcttctgagatgctgtggtcggc 741
|||||| ||||||||| ||||| |||| ||||||||| ||| |||| || |||||||||
Sbjct: 646 taacatttgttataatagtaggctcaataaagaacccccttttgaggtgttgtggtcggg 705
Query: 742 cacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaacttctttatct 801
|||| ||||| | ||||||||||||||||| |||||| || |||||||||||| |||| |
Sbjct: 706 cacccccatatagaattgtggcaccttcacatcttgctgttgagatgaacttcattattt 765
Query: 802 tctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtggatctg 861
| | ||||| |||||||| | ||||| ||||| ||||| ||||| || ||||||||||
Sbjct: 766 tttgatactgcccttcactaacgactgaccccagcctgcaaccttcttctagtggatctg 825
Query: 862 agacttttatattcttt 878
||| ||| ||| |||||
Sbjct: 826 agattttgatactcttt 842
>dbj|AB001348.1| Oryza sativa (japonica cultivar-group) gene for betaine aldehyde
dehydrogenase, complete cds
Length = 4428
Score = 167 bits (84), Expect = 2e-038
Identities = 138/156 (88%)
Strand = Plus / Minus
Query: 579 tgagtatcatttgcaagttccacagcttcactatctgtcctaaactccttaacacagatg 638
|||||||||||||||||||| || ||||||| ||||||||||| || ||||| ||||||
Sbjct: 3803 tgagtatcatttgcaagttctactgcttcacgctctgtcctaaattctttaacgcagatg 3744
Query: 639 actggtccaaagacttcctcttgccaaatttgcattgacgtactaacatctgttataatt 698
|| |||||||||||||||||| |||||||||||||||| || ||||||| |||||||||
Sbjct: 3743 accggtccaaagacttcctctcgccaaatttgcattgatgtgctaacatttgttataata 3684
Query: 699 gtaggttcaagaaagaaccctcttctgagatgctgt 734
||||| |||| ||||||||| ||| |||| ||||||
Sbjct: 3683 gtaggctcaataaagaacccccttttgaggtgctgt 3648
Score = 109 bits (55), Expect = 3e-021
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 420 agctcccgaccaaaaccgctccgcttgttccctccccaaggagcttgaacgaagcatggt 479
|||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 4175 agctcccggccaaaaccactccgcttgttccctccccatggagcttgaacaaagcatggt 4116
Query: 480 tgggaacaatttatccaaa 498
|| || |||||||||||||
Sbjct: 4115 tgcgagcaatttatccaaa 4097
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 825 actgaacccagtctgcagccttcctccagtggatctgagacttttatattctttgcccat 884
||||| ||||| ||||| ||||| || ||||||||||||| ||| ||| |||||||||||
Sbjct: 3161 actgaccccagcctgcaaccttcttctagtggatctgagattttgatactctttgcccat 3102
Query: 885 gcaaccaatctatccaagaatttctttgcaattttctc 922
|||||||| |||||||||||| |||||||||||||||
Sbjct: 3101 gcaaccaacctatccaagaatcgctttgcaattttctc 3064
Score = 79.8 bits (40), Expect = 3e-012
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 930 agtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaaacatggtc 989
|||| |||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 2986 agtagacgagaagtagcactgcagacttgaccagcgttcgcaaaacacccaaacatggcc 2927
Query: 990 cattcaacagct 1001
|| |||||||||
Sbjct: 2926 cactcaacagct 2915
Score = 79.8 bits (40), Expect = 3e-012
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 1020 tcatcaaagacaataagaggacttttcccaccaagctctaatgagacaggct 1071
|||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 2728 tcatcaaagacaataagaggacttttgccaccaagctctaacgaaacaggct 2677
Score = 75.8 bits (38), Expect = 5e-011
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 322 acagcttagatggaggctggtaccatccccacggttcatccgagcaatacttggtgactt 381
||||||| ||||||||| |||||||||| | |||||||| ||||| |||||||||||||
Sbjct: 4426 acagcttggatggaggccggtaccatccgtatggttcatctgagcagtacttggtgactt 4367
Query: 382 gcttaactgtcaggtagttatc 403
|||| || ||| |||||||||
Sbjct: 4366 gcttcacgctcaagtagttatc 4345
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 517 cctttgaaatgcgctcacacctctcttgatcattggagatcacggcaccagctaaaccat 576
|||||||||||||||| ||||||||| |||||||||| ||||| || ||||||| |||||
Sbjct: 3941 cctttgaaatgcgctcgcacctctctagatcattggaaatcacagcgccagctagaccat 3882
Query: 577 ag 578
||
Sbjct: 3881 ag 3880
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 732 tgtggtcggccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaac 791
||||||||| |||| ||||| | ||||||||||||||||| |||||| || |||||||||
Sbjct: 3566 tgtggtcgggcacccccatatagaattgtggcaccttcacatcttgctgttgagatgaac 3507
Query: 792 ttctttat 799
||| ||||
Sbjct: 3506 ttcattat 3499
Score = 67.9 bits (34), Expect = 1e-008
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 1074 accatttgggcagctgaaatcattatcctcttaccagtctctgtacttccagtnaaa 1130
|||||||||| ||| | ||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 2528 accatttgggaagcagtaatcattatcctcttaccagtttctgtgcttccagtaaaa 2472
>gb|AACV01009925.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009925, whole
genome shotgun sequence
Length = 23673
Score = 167 bits (84), Expect = 2e-038
Identities = 138/156 (88%)
Strand = Plus / Plus
Query: 579 tgagtatcatttgcaagttccacagcttcactatctgtcctaaactccttaacacagatg 638
|||||||||||||||||||| || ||||||| ||||||||||| || ||||| ||||||
Sbjct: 13508 tgagtatcatttgcaagttctactgcttcacgctctgtcctaaattctttaacgcagatg 13567
Query: 639 actggtccaaagacttcctcttgccaaatttgcattgacgtactaacatctgttataatt 698
|| |||||||||||||||||| |||||||||||||||| || ||||||| |||||||||
Sbjct: 13568 accggtccaaagacttcctctcgccaaatttgcattgatgtgctaacatttgttataata 13627
Query: 699 gtaggttcaagaaagaaccctcttctgagatgctgt 734
||||| |||| ||||||||| ||| |||| ||||||
Sbjct: 13628 gtaggctcaataaagaacccccttttgaggtgctgt 13663
Score = 109 bits (55), Expect = 3e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 420 agctcccgaccaaaaccgctccgcttgttccctccccaaggagcttgaacgaagcatggt 479
|||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 13136 agctcccggccaaaaccactccgcttgttccctccccatggagcttgaacaaagcatggt 13195
Query: 480 tgggaacaatttatccaaa 498
|| || |||||||||||||
Sbjct: 13196 tgcgagcaatttatccaaa 13214
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 825 actgaacccagtctgcagccttcctccagtggatctgagacttttatattctttgcccat 884
||||| ||||| ||||| ||||| || ||||||||||||| ||| ||| |||||||||||
Sbjct: 14150 actgaccccagcctgcaaccttcttctagtggatctgagattttgatactctttgcccat 14209
Query: 885 gcaaccaatctatccaagaatttctttgcaattttctc 922
|||||||| |||||||||||| |||||||||||||||
Sbjct: 14210 gcaaccaacctatccaagaatcgctttgcaattttctc 14247
Score = 79.8 bits (40), Expect = 3e-012
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 1020 tcatcaaagacaataagaggacttttcccaccaagctctaatgagacaggct 1071
|||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 14583 tcatcaaagacaataagaggacttttgccaccaagctctaacgaaacaggct 14634
Score = 79.8 bits (40), Expect = 3e-012
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 930 agtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaaacatggtc 989
|||| |||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 14325 agtagacgagaagtagcactgcagacttgaccagcgttcgcaaaacacccaaacatggcc 14384
Query: 990 cattcaacagct 1001
|| |||||||||
Sbjct: 14385 cactcaacagct 14396
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 517 cctttgaaatgcgctcacacctctcttgatcattggagatcacggcaccagctaaaccat 576
|||||||||||||||| ||||||||| |||||||||| ||||| || ||||||| |||||
Sbjct: 13370 cctttgaaatgcgctcgcacctctctagatcattggaaatcacagcgccagctagaccat 13429
Query: 577 ag 578
||
Sbjct: 13430 ag 13431
Score = 75.8 bits (38), Expect = 5e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 322 acagcttagatggaggctggtaccatccccacggttcatccgagcaatacttggtgactt 381
||||||| ||||||||| |||||||||| | |||||||| ||||| |||||||||||||
Sbjct: 12885 acagcttggatggaggccggtaccatccgtatggttcatctgagcagtacttggtgactt 12944
Query: 382 gcttaactgtcaggtagttatc 403
|||| || ||| |||||||||
Sbjct: 12945 gcttcacgctcaagtagttatc 12966
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 732 tgtggtcggccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaac 791
||||||||| |||| ||||| | ||||||||||||||||| |||||| || |||||||||
Sbjct: 13745 tgtggtcgggcacccccatatagaattgtggcaccttcacatcttgctgttgagatgaac 13804
Query: 792 ttctttat 799
||| ||||
Sbjct: 13805 ttcattat 13812
Score = 67.9 bits (34), Expect = 1e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 1074 accatttgggcagctgaaatcattatcctcttaccagtctctgtacttccagtnaaa 1130
|||||||||| ||| | ||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 14783 accatttgggaagcagtaatcattatcctcttaccagtttctgtgcttccagtaaaa 14839
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 167 bits (84), Expect = 2e-038
Identities = 138/156 (88%)
Strand = Plus / Plus
Query: 579 tgagtatcatttgcaagttccacagcttcactatctgtcctaaactccttaacacagatg 638
|||||||||||||||||||| || ||||||| ||||||||||| || ||||| ||||||
Sbjct: 750794 tgagtatcatttgcaagttctactgcttcacgctctgtcctaaattctttaacgcagatg 750853
Query: 639 actggtccaaagacttcctcttgccaaatttgcattgacgtactaacatctgttataatt 698
|| |||||||||||||||||| |||||||||||||||| || ||||||| |||||||||
Sbjct: 750854 accggtccaaagacttcctctcgccaaatttgcattgatgtgctaacatttgttataata 750913
Query: 699 gtaggttcaagaaagaaccctcttctgagatgctgt 734
||||| |||| ||||||||| ||| |||| ||||||
Sbjct: 750914 gtaggctcaataaagaacccccttttgaggtgctgt 750949
Score = 109 bits (55), Expect = 3e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 420 agctcccgaccaaaaccgctccgcttgttccctccccaaggagcttgaacgaagcatggt 479
|||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 750422 agctcccggccaaaaccactccgcttgttccctccccatggagcttgaacaaagcatggt 750481
Query: 480 tgggaacaatttatccaaa 498
|| || |||||||||||||
Sbjct: 750482 tgcgagcaatttatccaaa 750500
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 825 actgaacccagtctgcagccttcctccagtggatctgagacttttatattctttgcccat 884
||||| ||||| ||||| ||||| || ||||||||||||| ||| ||| |||||||||||
Sbjct: 751436 actgaccccagcctgcaaccttcttctagtggatctgagattttgatactctttgcccat 751495
Query: 885 gcaaccaatctatccaagaatttctttgcaattttctc 922
|||||||| |||||||||||| |||||||||||||||
Sbjct: 751496 gcaaccaacctatccaagaatcgctttgcaattttctc 751533
Score = 79.8 bits (40), Expect = 3e-012
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 1020 tcatcaaagacaataagaggacttttcccaccaagctctaatgagacaggct 1071
|||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 751869 tcatcaaagacaataagaggacttttgccaccaagctctaacgaaacaggct 751920
Score = 79.8 bits (40), Expect = 3e-012
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 930 agtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaaacatggtc 989
|||| |||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 751611 agtagacgagaagtagcactgcagacttgaccagcgttcgcaaaacacccaaacatggcc 751670
Query: 990 cattcaacagct 1001
|| |||||||||
Sbjct: 751671 cactcaacagct 751682
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 517 cctttgaaatgcgctcacacctctcttgatcattggagatcacggcaccagctaaaccat 576
|||||||||||||||| ||||||||| |||||||||| ||||| || ||||||| |||||
Sbjct: 750656 cctttgaaatgcgctcgcacctctctagatcattggaaatcacagcgccagctagaccat 750715
Query: 577 ag 578
||
Sbjct: 750716 ag 750717
Score = 75.8 bits (38), Expect = 5e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 322 acagcttagatggaggctggtaccatccccacggttcatccgagcaatacttggtgactt 381
||||||| ||||||||| |||||||||| | |||||||| ||||| |||||||||||||
Sbjct: 750171 acagcttggatggaggccggtaccatccgtatggttcatctgagcagtacttggtgactt 750230
Query: 382 gcttaactgtcaggtagttatc 403
|||| || ||| |||||||||
Sbjct: 750231 gcttcacgctcaagtagttatc 750252
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 732 tgtggtcggccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaac 791
||||||||| |||| ||||| | ||||||||||||||||| |||||| || |||||||||
Sbjct: 751031 tgtggtcgggcacccccatatagaattgtggcaccttcacatcttgctgttgagatgaac 751090
Query: 792 ttctttat 799
||| ||||
Sbjct: 751091 ttcattat 751098
Score = 67.9 bits (34), Expect = 1e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 1074 accatttgggcagctgaaatcattatcctcttaccagtctctgtacttccagtnaaa 1130
|||||||||| ||| | ||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 752069 accatttgggaagcagtaatcattatcctcttaccagtttctgtgcttccagtaaaa 752125
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 167 bits (84), Expect = 2e-038
Identities = 138/156 (88%)
Strand = Plus / Plus
Query: 579 tgagtatcatttgcaagttccacagcttcactatctgtcctaaactccttaacacagatg 638
|||||||||||||||||||| || ||||||| ||||||||||| || ||||| ||||||
Sbjct: 1039119 tgagtatcatttgcaagttctactgcttcacgctctgtcctaaattctttaacgcagatg 1039178
Query: 639 actggtccaaagacttcctcttgccaaatttgcattgacgtactaacatctgttataatt 698
|| |||||||||||||||||| |||||||||||||||| || ||||||| |||||||||
Sbjct: 1039179 accggtccaaagacttcctctcgccaaatttgcattgatgtgctaacatttgttataata 1039238
Query: 699 gtaggttcaagaaagaaccctcttctgagatgctgt 734
||||| |||| ||||||||| ||| |||| ||||||
Sbjct: 1039239 gtaggctcaataaagaacccccttttgaggtgctgt 1039274
Score = 109 bits (55), Expect = 3e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 420 agctcccgaccaaaaccgctccgcttgttccctccccaaggagcttgaacgaagcatggt 479
|||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 1038747 agctcccggccaaaaccactccgcttgttccctccccatggagcttgaacaaagcatggt 1038806
Query: 480 tgggaacaatttatccaaa 498
|| || |||||||||||||
Sbjct: 1038807 tgcgagcaatttatccaaa 1038825
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 825 actgaacccagtctgcagccttcctccagtggatctgagacttttatattctttgcccat 884
||||| ||||| ||||| ||||| || ||||||||||||| ||| ||| |||||||||||
Sbjct: 1039761 actgaccccagcctgcaaccttcttctagtggatctgagattttgatactctttgcccat 1039820
Query: 885 gcaaccaatctatccaagaatttctttgcaattttctc 922
|||||||| |||||||||||| |||||||||||||||
Sbjct: 1039821 gcaaccaacctatccaagaatcgctttgcaattttctc 1039858
Score = 79.8 bits (40), Expect = 3e-012
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 1020 tcatcaaagacaataagaggacttttcccaccaagctctaatgagacaggct 1071
|||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 1040194 tcatcaaagacaataagaggacttttgccaccaagctctaacgaaacaggct 1040245
Score = 79.8 bits (40), Expect = 3e-012
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 930 agtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaaacatggtc 989
|||| |||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 1039936 agtagacgagaagtagcactgcagacttgaccagcgttcgcaaaacacccaaacatggcc 1039995
Query: 990 cattcaacagct 1001
|| |||||||||
Sbjct: 1039996 cactcaacagct 1040007
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 517 cctttgaaatgcgctcacacctctcttgatcattggagatcacggcaccagctaaaccat 576
|||||||||||||||| ||||||||| |||||||||| ||||| || ||||||| |||||
Sbjct: 1038981 cctttgaaatgcgctcgcacctctctagatcattggaaatcacagcgccagctagaccat 1039040
Query: 577 ag 578
||
Sbjct: 1039041 ag 1039042
Score = 75.8 bits (38), Expect = 5e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 322 acagcttagatggaggctggtaccatccccacggttcatccgagcaatacttggtgactt 381
||||||| ||||||||| |||||||||| | |||||||| ||||| |||||||||||||
Sbjct: 1038496 acagcttggatggaggccggtaccatccgtatggttcatctgagcagtacttggtgactt 1038555
Query: 382 gcttaactgtcaggtagttatc 403
|||| || ||| |||||||||
Sbjct: 1038556 gcttcacgctcaagtagttatc 1038577
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 732 tgtggtcggccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaac 791
||||||||| |||| ||||| | ||||||||||||||||| |||||| || |||||||||
Sbjct: 1039356 tgtggtcgggcacccccatatagaattgtggcaccttcacatcttgctgttgagatgaac 1039415
Query: 792 ttctttat 799
||| ||||
Sbjct: 1039416 ttcattat 1039423
Score = 67.9 bits (34), Expect = 1e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 1074 accatttgggcagctgaaatcattatcctcttaccagtctctgtacttccagtnaaa 1130
|||||||||| ||| | ||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 1040394 accatttgggaagcagtaatcattatcctcttaccagtttctgtgcttccagtaaaa 1040450
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 167 bits (84), Expect = 2e-038
Identities = 138/156 (88%)
Strand = Plus / Plus
Query: 579 tgagtatcatttgcaagttccacagcttcactatctgtcctaaactccttaacacagatg 638
|||||||||||||||||||| || ||||||| ||||||||||| || ||||| ||||||
Sbjct: 20183218 tgagtatcatttgcaagttctactgcttcacgctctgtcctaaattctttaacgcagatg 20183277
Query: 639 actggtccaaagacttcctcttgccaaatttgcattgacgtactaacatctgttataatt 698
|| |||||||||||||||||| |||||||||||||||| || ||||||| |||||||||
Sbjct: 20183278 accggtccaaagacttcctctcgccaaatttgcattgatgtgctaacatttgttataata 20183337
Query: 699 gtaggttcaagaaagaaccctcttctgagatgctgt 734
||||| |||| ||||||||| ||| |||| ||||||
Sbjct: 20183338 gtaggctcaataaagaacccccttttgaggtgctgt 20183373
Score = 109 bits (55), Expect = 3e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 420 agctcccgaccaaaaccgctccgcttgttccctccccaaggagcttgaacgaagcatggt 479
|||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 20182846 agctcccggccaaaaccactccgcttgttccctccccatggagcttgaacaaagcatggt 20182905
Query: 480 tgggaacaatttatccaaa 498
|| || |||||||||||||
Sbjct: 20182906 tgcgagcaatttatccaaa 20182924
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 825 actgaacccagtctgcagccttcctccagtggatctgagacttttatattctttgcccat 884
||||| ||||| ||||| ||||| || ||||||||||||| ||| ||| |||||||||||
Sbjct: 20183860 actgaccccagcctgcaaccttcttctagtggatctgagattttgatactctttgcccat 20183919
Query: 885 gcaaccaatctatccaagaatttctttgcaattttctc 922
|||||||| |||||||||||| |||||||||||||||
Sbjct: 20183920 gcaaccaacctatccaagaatcgctttgcaattttctc 20183957
Score = 79.8 bits (40), Expect = 3e-012
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 1020 tcatcaaagacaataagaggacttttcccaccaagctctaatgagacaggct 1071
|||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 20184293 tcatcaaagacaataagaggacttttgccaccaagctctaacgaaacaggct 20184344
Score = 79.8 bits (40), Expect = 3e-012
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 930 agtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaaacatggtc 989
|||| |||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 20184035 agtagacgagaagtagcactgcagacttgaccagcgttcgcaaaacacccaaacatggcc 20184094
Query: 990 cattcaacagct 1001
|| |||||||||
Sbjct: 20184095 cactcaacagct 20184106
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 517 cctttgaaatgcgctcacacctctcttgatcattggagatcacggcaccagctaaaccat 576
|||||||||||||||| ||||||||| |||||||||| ||||| || ||||||| |||||
Sbjct: 20183080 cctttgaaatgcgctcgcacctctctagatcattggaaatcacagcgccagctagaccat 20183139
Query: 577 ag 578
||
Sbjct: 20183140 ag 20183141
Score = 75.8 bits (38), Expect = 5e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 322 acagcttagatggaggctggtaccatccccacggttcatccgagcaatacttggtgactt 381
||||||| ||||||||| |||||||||| | |||||||| ||||| |||||||||||||
Sbjct: 20182595 acagcttggatggaggccggtaccatccgtatggttcatctgagcagtacttggtgactt 20182654
Query: 382 gcttaactgtcaggtagttatc 403
|||| || ||| |||||||||
Sbjct: 20182655 gcttcacgctcaagtagttatc 20182676
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 732 tgtggtcggccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaac 791
||||||||| |||| ||||| | ||||||||||||||||| |||||| || |||||||||
Sbjct: 20183455 tgtggtcgggcacccccatatagaattgtggcaccttcacatcttgctgttgagatgaac 20183514
Query: 792 ttctttat 799
||| ||||
Sbjct: 20183515 ttcattat 20183522
Score = 67.9 bits (34), Expect = 1e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 1074 accatttgggcagctgaaatcattatcctcttaccagtctctgtacttccagtnaaa 1130
|||||||||| ||| | ||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 20184493 accatttgggaagcagtaatcattatcctcttaccagtttctgtgcttccagtaaaa 20184549
>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14,
complete sequence
Length = 139418
Score = 167 bits (84), Expect = 2e-038
Identities = 138/156 (88%)
Strand = Plus / Plus
Query: 579 tgagtatcatttgcaagttccacagcttcactatctgtcctaaactccttaacacagatg 638
|||||||||||||||||||| || ||||||| ||||||||||| || ||||| ||||||
Sbjct: 37262 tgagtatcatttgcaagttctactgcttcacgctctgtcctaaattctttaacgcagatg 37321
Query: 639 actggtccaaagacttcctcttgccaaatttgcattgacgtactaacatctgttataatt 698
|| |||||||||||||||||| |||||||||||||||| || ||||||| |||||||||
Sbjct: 37322 accggtccaaagacttcctctcgccaaatttgcattgatgtgctaacatttgttataata 37381
Query: 699 gtaggttcaagaaagaaccctcttctgagatgctgt 734
||||| |||| ||||||||| ||| |||| ||||||
Sbjct: 37382 gtaggctcaataaagaacccccttttgaggtgctgt 37417
Score = 109 bits (55), Expect = 3e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 420 agctcccgaccaaaaccgctccgcttgttccctccccaaggagcttgaacgaagcatggt 479
|||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 36890 agctcccggccaaaaccactccgcttgttccctccccatggagcttgaacaaagcatggt 36949
Query: 480 tgggaacaatttatccaaa 498
|| || |||||||||||||
Sbjct: 36950 tgcgagcaatttatccaaa 36968
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 825 actgaacccagtctgcagccttcctccagtggatctgagacttttatattctttgcccat 884
||||| ||||| ||||| ||||| || ||||||||||||| ||| ||| |||||||||||
Sbjct: 37904 actgaccccagcctgcaaccttcttctagtggatctgagattttgatactctttgcccat 37963
Query: 885 gcaaccaatctatccaagaatttctttgcaattttctc 922
|||||||| |||||||||||| |||||||||||||||
Sbjct: 37964 gcaaccaacctatccaagaatcgctttgcaattttctc 38001
Score = 79.8 bits (40), Expect = 3e-012
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 1020 tcatcaaagacaataagaggacttttcccaccaagctctaatgagacaggct 1071
|||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 38337 tcatcaaagacaataagaggacttttgccaccaagctctaacgaaacaggct 38388
Score = 79.8 bits (40), Expect = 3e-012
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 930 agtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaaacatggtc 989
|||| |||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 38079 agtagacgagaagtagcactgcagacttgaccagcgttcgcaaaacacccaaacatggcc 38138
Query: 990 cattcaacagct 1001
|| |||||||||
Sbjct: 38139 cactcaacagct 38150
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 517 cctttgaaatgcgctcacacctctcttgatcattggagatcacggcaccagctaaaccat 576
|||||||||||||||| ||||||||| |||||||||| ||||| || ||||||| |||||
Sbjct: 37124 cctttgaaatgcgctcgcacctctctagatcattggaaatcacagcgccagctagaccat 37183
Query: 577 ag 578
||
Sbjct: 37184 ag 37185
Score = 75.8 bits (38), Expect = 5e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 322 acagcttagatggaggctggtaccatccccacggttcatccgagcaatacttggtgactt 381
||||||| ||||||||| |||||||||| | |||||||| ||||| |||||||||||||
Sbjct: 36639 acagcttggatggaggccggtaccatccgtatggttcatctgagcagtacttggtgactt 36698
Query: 382 gcttaactgtcaggtagttatc 403
|||| || ||| |||||||||
Sbjct: 36699 gcttcacgctcaagtagttatc 36720
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 732 tgtggtcggccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaac 791
||||||||| |||| ||||| | ||||||||||||||||| |||||| || |||||||||
Sbjct: 37499 tgtggtcgggcacccccatatagaattgtggcaccttcacatcttgctgttgagatgaac 37558
Query: 792 ttctttat 799
||| ||||
Sbjct: 37559 ttcattat 37566
Score = 67.9 bits (34), Expect = 1e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 1074 accatttgggcagctgaaatcattatcctcttaccagtctctgtacttccagtnaaa 1130
|||||||||| ||| | ||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 38537 accatttgggaagcagtaatcattatcctcttaccagtttctgtgcttccagtaaaa 38593
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 167 bits (84), Expect = 2e-038
Identities = 138/156 (88%)
Strand = Plus / Plus
Query: 579 tgagtatcatttgcaagttccacagcttcactatctgtcctaaactccttaacacagatg 638
|||||||||||||||||||| || ||||||| ||||||||||| || ||||| ||||||
Sbjct: 23147070 tgagtatcatttgcaagttctactgcttcacgctctgtcctaaattctttaacgcagatg 23147129
Query: 639 actggtccaaagacttcctcttgccaaatttgcattgacgtactaacatctgttataatt 698
|| |||||||||||||||||| |||||||||||||||| || ||||||| |||||||||
Sbjct: 23147130 accggtccaaagacttcctctcgccaaatttgcattgatgtgctaacatttgttataata 23147189
Query: 699 gtaggttcaagaaagaaccctcttctgagatgctgt 734
||||| |||| ||||||||| ||| |||| ||||||
Sbjct: 23147190 gtaggctcaataaagaacccccttttgaggtgctgt 23147225
Score = 109 bits (55), Expect = 3e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 420 agctcccgaccaaaaccgctccgcttgttccctccccaaggagcttgaacgaagcatggt 479
|||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 23146698 agctcccggccaaaaccactccgcttgttccctccccatggagcttgaacaaagcatggt 23146757
Query: 480 tgggaacaatttatccaaa 498
|| || |||||||||||||
Sbjct: 23146758 tgcgagcaatttatccaaa 23146776
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 825 actgaacccagtctgcagccttcctccagtggatctgagacttttatattctttgcccat 884
||||| ||||| ||||| ||||| || ||||||||||||| ||| ||| |||||||||||
Sbjct: 23147712 actgaccccagcctgcaaccttcttctagtggatctgagattttgatactctttgcccat 23147771
Query: 885 gcaaccaatctatccaagaatttctttgcaattttctc 922
|||||||| |||||||||||| |||||||||||||||
Sbjct: 23147772 gcaaccaacctatccaagaatcgctttgcaattttctc 23147809
Score = 79.8 bits (40), Expect = 3e-012
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 1020 tcatcaaagacaataagaggacttttcccaccaagctctaatgagacaggct 1071
|||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 23148145 tcatcaaagacaataagaggacttttgccaccaagctctaacgaaacaggct 23148196
Score = 79.8 bits (40), Expect = 3e-012
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 930 agtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaaacatggtc 989
|||| |||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 23147887 agtagacgagaagtagcactgcagacttgaccagcgttcgcaaaacacccaaacatggcc 23147946
Query: 990 cattcaacagct 1001
|| |||||||||
Sbjct: 23147947 cactcaacagct 23147958
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 517 cctttgaaatgcgctcacacctctcttgatcattggagatcacggcaccagctaaaccat 576
|||||||||||||||| ||||||||| |||||||||| ||||| || ||||||| |||||
Sbjct: 23146932 cctttgaaatgcgctcgcacctctctagatcattggaaatcacagcgccagctagaccat 23146991
Query: 577 ag 578
||
Sbjct: 23146992 ag 23146993
Score = 75.8 bits (38), Expect = 5e-011
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 322 acagcttagatggaggctggtaccatccccacggttcatccgagcaatacttggtgactt 381
||||||| ||||||||| |||||||||| | |||||||| ||||| |||||||||||||
Sbjct: 23146447 acagcttggatggaggccggtaccatccgtatggttcatctgagcagtacttggtgactt 23146506
Query: 382 gcttaactgtcaggtagttatc 403
|||| || ||| |||||||||
Sbjct: 23146507 gcttcacgctcaagtagttatc 23146528
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 732 tgtggtcggccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaac 791
||||||||| |||| ||||| | ||||||||||||||||| |||||| || |||||||||
Sbjct: 23147307 tgtggtcgggcacccccatatagaattgtggcaccttcacatcttgctgttgagatgaac 23147366
Query: 792 ttctttat 799
||| ||||
Sbjct: 23147367 ttcattat 23147374
Score = 67.9 bits (34), Expect = 1e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 1074 accatttgggcagctgaaatcattatcctcttaccagtctctgtacttccagtnaaa 1130
|||||||||| ||| | ||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 23148345 accatttgggaagcagtaatcattatcctcttaccagtttctgtgcttccagtaaaa 23148401
>dbj|AG211653.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF5017_0_131_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF5017, genomic survey sequence
Length = 726
Score = 107 bits (54), Expect = 1e-020
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 825 actgaacccagtctgcagccttcctccagtggatctgagacttttatattctttgcccat 884
||||| ||||| ||||| ||||| || ||||||||||||| ||| ||| |||||||||||
Sbjct: 273 actgaccccagcctgcaaccttcttctagtggatctgagattttgatactctttgcccat 214
Query: 885 gcaaccaatctatccaagaatttctttgcaattttctc 922
|||||||| |||||||||||| |||||||||||||||
Sbjct: 213 gcaaccaacctatccaagaatcgctttgcaattttctc 176
Score = 79.8 bits (40), Expect = 3e-012
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 930 agtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaaacatggtc 989
|||| |||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 98 agtagacgagaagtagcactgcagacttgaccagcgttcgcaaaacacccaaacatggcc 39
Query: 990 cattcaacagct 1001
|| |||||||||
Sbjct: 38 cactcaacagct 27
Score = 71.9 bits (36), Expect = 7e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 732 tgtggtcggccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaac 791
||||||||| |||| ||||| | ||||||||||||||||| |||||| || |||||||||
Sbjct: 678 tgtggtcgggcacccccatatagaattgtggcaccttcacatcttgctgttgagatgaac 619
Query: 792 ttctttat 799
||| ||||
Sbjct: 618 ttcattat 611
>gb|CB649659.1|CB649659 OSJNEb13L16.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13L16 3', mRNA sequence
Length = 870
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 341 gtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtagtt 400
||||||||||||||| ||||| ||| |||| || |||||||| || | ||||||||
Sbjct: 306 gtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtagtt 365
Query: 401 atcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaagg 460
|||| |||| |||||||||||| || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 366 gtcaatgcccccttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatgg 425
Query: 461 agcttg 466
||||||
Sbjct: 426 agcttg 431
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 798 atcttctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtgga 857
|||||||| |||||||||||||| | ||| | || || ||||| || || || ||||||
Sbjct: 763 atcttctcatactgtccttcactaacaacgggcccaagcctgcaaccctcttcaagtgga 822
Query: 858 tctgagacttttatattctttgcccatgcaacca 891
||||| || || ||||| || |||||||||||||
Sbjct: 823 tctgacaccttaatatttttggcccatgcaacca 856
>gb|CB655656.1|CB655656 OSJNEc09E12.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09E12 3', mRNA sequence
Length = 836
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 341 gtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtagtt 400
||||||||||||||| ||||| ||| |||| || |||||||| || | ||||||||
Sbjct: 215 gtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtagtt 274
Query: 401 atcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaagg 460
|||| |||| |||||||||||| || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 275 gtcaatgcccccttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatgg 334
Query: 461 agcttg 466
||||||
Sbjct: 335 agcttg 340
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 798 atcttctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtgga 857
|||||||| |||||||||||||| | ||| | || || ||||| || || || ||||||
Sbjct: 672 atcttctcatactgtccttcactaacaacgggcccaagcctgcaaccctcttcaagtgga 731
Query: 858 tctgagacttttatattctttgcccatgcaacca 891
||||| || || ||||| || |||||||||||||
Sbjct: 732 tctgacaccttaatatttttggcccatgcaacca 765
>gb|CF311480.1|CF311480 ABF--06-L10.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-L10, mRNA sequence
Length = 547
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 341 gtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtagtt 400
||||||||||||||| ||||| ||| |||| || |||||||| || | ||||||||
Sbjct: 192 gtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtagtt 251
Query: 401 atcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaagg 460
|||| |||| |||||||||||| || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 252 gtcaatgcccccttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatgg 311
Query: 461 agcttg 466
||||||
Sbjct: 312 agcttg 317
>gb|CF329626.1|CF329626 NACL--05-A07.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--05-A07, mRNA sequence
Length = 476
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 341 gtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtagtt 400
||||||||||||||| ||||| ||| |||| || |||||||| || | ||||||||
Sbjct: 237 gtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtagtt 296
Query: 401 atcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaagg 460
|||| |||| |||||||||||| || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 297 gtcaatgcccccttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatgg 356
Query: 461 agcttg 466
||||||
Sbjct: 357 agcttg 362
>dbj|AB096083.1| Oryza sativa (japonica cultivar-group) BADH2 mRNA for betaine
aldehyde dehydrogenase, complete cds
Length = 1512
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 341 gtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtagtt 400
||||||||||||||| ||||| ||| |||| || |||||||| || | ||||||||
Sbjct: 1491 gtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtagtt 1432
Query: 401 atcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaagg 460
|||| |||| |||||||||||| || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 1431 gtcaatgcccccttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatgg 1372
Query: 461 agcttg 466
||||||
Sbjct: 1371 agcttg 1366
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 798 atcttctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtgga 857
|||||||| |||||||||||||| | ||| | || || ||||| || || || ||||||
Sbjct: 1034 atcttctcatactgtccttcactaacaacgggcccaagcctgcaaccctcttcaagtgga 975
Query: 858 tctgagacttttatattctttgcccatgcaacca 891
||||| || || ||||| || |||||||||||||
Sbjct: 974 tctgacaccttaatatttttggcccatgcaacca 941
Score = 46.1 bits (23), Expect = 0.041
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 1037 aggacttttcccaccaagctctaatgagacaggcttaaccatttgggcagctgaa 1091
||||||||| |||||||| || | ||| |||||||||||||| | |||||||||
Sbjct: 798 aggactttttccaccaagttccagtgaaacaggcttaaccataggagcagctgaa 744
>dbj|AK060461.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-B10, full
insert sequence
Length = 1317
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 341 gtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtagtt 400
||||||||||||||| ||||| ||| |||| || |||||||| || | ||||||||
Sbjct: 1149 gtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtagtt 1090
Query: 401 atcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaagg 460
|||| |||| |||||||||||| || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 1089 gtcaatgcccccttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatgg 1030
Query: 461 agcttg 466
||||||
Sbjct: 1029 agcttg 1024
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 798 atcttctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtgga 857
|||||||| |||||||||||||| | ||| | || || ||||| || || || ||||||
Sbjct: 692 atcttctcatactgtccttcactaacaacgggcccaagcctgcaaccctcttcaagtgga 633
Query: 858 tctgagacttttatattctttgcccatgcaacca 891
||||| || || ||||| || |||||||||||||
Sbjct: 632 tctgacaccttaatatttttggcccatgcaacca 599
Score = 46.1 bits (23), Expect = 0.041
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 1037 aggacttttcccaccaagctctaatgagacaggcttaaccatttgggcagctgaa 1091
||||||||| |||||||| || | ||| |||||||||||||| | |||||||||
Sbjct: 456 aggactttttccaccaagttccagtgaaacaggcttaaccataggagcagctgaa 402
>dbj|AK071221.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C02, full
insert sequence
Length = 1807
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 341 gtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtagtt 400
||||||||||||||| ||||| ||| |||| || |||||||| || | ||||||||
Sbjct: 1639 gtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtagtt 1580
Query: 401 atcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaagg 460
|||| |||| |||||||||||| || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 1579 gtcaatgcccccttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatgg 1520
Query: 461 agcttg 466
||||||
Sbjct: 1519 agcttg 1514
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 798 atcttctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtgga 857
|||||||| |||||||||||||| | ||| | || || ||||| || || || ||||||
Sbjct: 1182 atcttctcatactgtccttcactaacaacgggcccaagcctgcaaccctcttcaagtgga 1123
Query: 858 tctgagacttttatattctttgcccatgcaacca 891
||||| || || ||||| || |||||||||||||
Sbjct: 1122 tctgacaccttaatatttttggcccatgcaacca 1089
Score = 46.1 bits (23), Expect = 0.041
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 1037 aggacttttcccaccaagctctaatgagacaggcttaaccatttgggcagctgaa 1091
||||||||| |||||||| || | ||| |||||||||||||| | |||||||||
Sbjct: 945 aggactttttccaccaagttccagtgaaacaggcttaaccataggagcagctgaa 891
>ref|XM_482470.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1806
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 341 gtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtagtt 400
||||||||||||||| ||||| ||| |||| || |||||||| || | ||||||||
Sbjct: 1638 gtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtagtt 1579
Query: 401 atcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaagg 460
|||| |||| |||||||||||| || ||||| ||||| ||||||||||| ||||| ||
Sbjct: 1578 gtcaatgcccccttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatgg 1519
Query: 461 agcttg 466
||||||
Sbjct: 1518 agcttg 1513
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 798 atcttctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtgga 857
|||||||| |||||||||||||| | ||| | || || ||||| || || || ||||||
Sbjct: 1181 atcttctcatactgtccttcactaacaacgggcccaagcctgcaaccctcttcaagtgga 1122
Query: 858 tctgagacttttatattctttgcccatgcaacca 891
||||| || || ||||| || |||||||||||||
Sbjct: 1121 tctgacaccttaatatttttggcccatgcaacca 1088
Score = 46.1 bits (23), Expect = 0.041
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 1037 aggacttttcccaccaagctctaatgagacaggcttaaccatttgggcagctgaa 1091
||||||||| |||||||| || | ||| |||||||||||||| | |||||||||
Sbjct: 945 aggactttttccaccaagttccagtgaaacaggcttaaccataggagcagctgaa 891
>gb|C98989.1|C98989 C98989 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3802_3Z, mRNA sequence
Length = 363
Score = 63.9 bits (32), Expect = 2e-007
Identities = 102/126 (80%)
Strand = Plus / Minus
Query: 341 gtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtagtt 400
||||||||||||||| ||||| ||| |||| || |||||||| || | ||||||||
Sbjct: 180 gtaccatccccacggctcatcggaggcgtactccgtcacttgcttgacgcttaggtagtt 121
Query: 401 atcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaagg 460
|||| |||| |||| ||||||| || ||||| ||| | ||||||||||| ||||| ||
Sbjct: 120 gtcaatgcccccttctncgagctcgcgtccaaagccgntgcgcttgttcccgccccatgg 61
Query: 461 agcttg 466
||||||
Sbjct: 60 agcttg 55
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0456B03
Length = 152973
Score = 60.0 bits (30), Expect = 3e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 413 ttctccgagctcccgaccaaaaccgctccgcttgttccctccccaaggagcttg 466
|||||||||||| || ||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 9026 ttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatggagcttg 8973
>dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0056L09
Length = 152910
Score = 60.0 bits (30), Expect = 3e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 413 ttctccgagctcccgaccaaaaccgctccgcttgttccctccccaaggagcttg 466
|||||||||||| || ||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 126144 ttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatggagcttg 126091
>gb|AACV01018493.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018493, whole
genome shotgun sequence
Length = 59473
Score = 60.0 bits (30), Expect = 3e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 413 ttctccgagctcccgaccaaaaccgctccgcttgttccctccccaaggagcttg 466
|||||||||||| || ||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 54173 ttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatggagcttg 54226
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 60.0 bits (30), Expect = 3e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 413 ttctccgagctcccgaccaaaaccgctccgcttgttccctccccaaggagcttg 466
|||||||||||| || ||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 20140309 ttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatggagcttg 20140256
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 60.0 bits (30), Expect = 3e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 413 ttctccgagctcccgaccaaaaccgctccgcttgttccctccccaaggagcttg 466
|||||||||||| || ||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 11618493 ttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatggagcttg 11618440
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 60.0 bits (30), Expect = 3e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 413 ttctccgagctcccgaccaaaaccgctccgcttgttccctccccaaggagcttg 466
|||||||||||| || ||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 19220499 ttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatggagcttg 19220446
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 60.0 bits (30), Expect = 3e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 413 ttctccgagctcccgaccaaaaccgctccgcttgttccctccccaaggagcttg 466
|||||||||||| || ||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 20378396 ttctccgagctcgcgtccaaagccgctgcgcttgttcccgccccatggagcttg 20378343
>gb|C19110.1|C19110 C19110 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3802_1A, mRNA sequence
Length = 460
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 798 atcttctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtgga 857
|||||||| |||||||||||||| | ||| | || || ||||| || || || ||||||
Sbjct: 97 atcttctcatactgtccttcactaacaacgggcccaagcctgcaaccctcttcaagtgga 38
Query: 858 tctgagacttttatattctttgcccatgcaacca 891
||||| || || ||||| || |||||||||||||
Sbjct: 37 tctgacaccttaatatttttggcccatgcaacca 4
>gb|CF311479.1|CF311479 ABF--06-L10.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-L10, mRNA sequence
Length = 608
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 798 atcttctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtgga 857
|||||||| |||||||||||||| | ||| | || || ||||| || || || ||||||
Sbjct: 374 atcttctcatactgtccttcactaacaacgggcccaagcctgcaaccctcttcaagtgga 315
Query: 858 tctgagacttttatattctttgcccatgcaacca 891
||||| || || ||||| || |||||||||||||
Sbjct: 314 tctgacaccttaatatttttggcccatgcaacca 281
Score = 46.1 bits (23), Expect = 0.041
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 1037 aggacttttcccaccaagctctaatgagacaggcttaaccatttgggcagctgaa 1091
||||||||| |||||||| || | ||| |||||||||||||| | |||||||||
Sbjct: 138 aggactttttccaccaagttccagtgaaacaggcttaaccataggagcagctgaa 84
>gb|CF329625.1|CF329625 NACL--05-A07.b1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--05-A07, mRNA
sequence
Length = 417
Score = 46.1 bits (23), Expect = 0.041
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 1037 aggacttttcccaccaagctctaatgagacaggcttaaccatttgggcagctgaa 1091
||||||||| |||||||| || | ||| |||||||||||||| | |||||||||
Sbjct: 193 aggactttttccaccaagttccagtgaaacaggcttaaccataggagcagctgaa 139
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,539,167
Number of Sequences: 438736
Number of extensions: 1539167
Number of successful extensions: 7699
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7447
Number of HSP's gapped (non-prelim): 234
length of query: 1130
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1109
effective length of database: 2,791,206,460
effective search space: 3095447964140
effective search space used: 3095447964140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)