BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969912.2.1
(507 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK058641.1| Oryza sativa (japonica cultivar-group) cDNA... 333 5e-089
ref|XM_470116.1| Oryza sativa (japonica cultivar-group), mRNA 333 5e-089
gb|D15747.1|D15747 RICC1183A Rice callus Oryza sativa (japo... 268 3e-069
gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 ... 240 6e-061
gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 gen... 240 6e-061
gb|AACV01008169.1| Oryza sativa (japonica cultivar-group) c... 240 6e-061
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 240 6e-061
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 240 6e-061
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 240 6e-061
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 240 6e-061
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 240 6e-061
gb|AACV01002608.1| Oryza sativa (japonica cultivar-group) c... 64 8e-008
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 64 8e-008
ref|NM_190422.1| Oryza sativa (japonica cultivar-group), p... 64 8e-008
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 64 8e-008
dbj|AP003734.3| Oryza sativa (japonica cultivar-group) geno... 64 8e-008
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 64 8e-008
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 64 8e-008
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 64 8e-008
dbj|AK062411.1| Oryza sativa (japonica cultivar-group) cDNA... 58 5e-006
gb|AACV01003141.1| Oryza sativa (japonica cultivar-group) c... 58 5e-006
ref|NM_189520.1| Oryza sativa (japonica cultivar-group), p... 58 5e-006
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 58 5e-006
dbj|AP003228.3| Oryza sativa (japonica cultivar-group) geno... 58 5e-006
dbj|AP007260.2| Oryza sativa (japonica cultivar-group) geno... 58 5e-006
dbj|AK062591.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
gb|AC098571.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|AC120988.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|AACV01012761.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
ref|XM_475941.1| Oryza sativa (japonica cultivar-group), p... 48 0.005
ref|NT_107222.1| Oryza sativa (japonica cultivar-group) 48 0.005
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 48 0.005
dbj|AK108192.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.018
dbj|AP003985.4| Oryza sativa (japonica cultivar-group) geno... 46 0.018
ref|XM_478925.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.018
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 46 0.018
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 46 0.018
gb|AQ509690.1|AQ509690 nbxb0096F10f CUGI Rice BAC Library O... 44 0.072
gb|AU063641.2|AU063641 AU063641 Rice callus Oryza sativa (j... 44 0.072
gb|AU163662.1|AU163662 AU163662 Rice panicle at flowering s... 44 0.072
gb|AU164003.1|AU164003 AU164003 Rice panicle at ripening st... 44 0.072
gb|CB642391.1|CB642391 OSJNEb02I20.f OSJNEb Oryza sativa (j... 44 0.072
gb|CB642392.1|CB642392 OSJNEb02I20.r OSJNEb Oryza sativa (j... 44 0.072
gb|CB645635.1|CB645635 OSJNEb07H18.f OSJNEb Oryza sativa (j... 44 0.072
gb|CO435683.1|CO435683 OsMR749 5MT resistant rice mutant cD... 44 0.072
gb|AU070136.2|AU070136 AU070136 Rice panicle (between 3cm t... 44 0.072
gb|AC108756.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.072
dbj|AK073885.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.072
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.072
gb|AZ126760.1|AZ126760 OSJNBb0079G05r CUGI Rice BAC Library... 42 0.28
gb|AZ127797.1|AZ127797 OSJNBb0092H14r CUGI Rice BAC Library... 42 0.28
gb|C26592.1|C26592 C26592 Rice callus cDNA Oryza sativa (ja... 42 0.28
gb|AU078687.1|AU078687 AU078687 Rice panicle shorter than 3... 42 0.28
gb|AU176486.1|AU176486 AU176486 Rice panicle (longer than 1... 42 0.28
gb|CA753937.1|CA753937 BR040005000F08.ab1 OA Oryza sativa (... 42 0.28
gb|CB650677.1|CB650677 OSJNEb15E04.f OSJNEb Oryza sativa (j... 42 0.28
gb|CB659352.1|CB659352 OSJNEc16E01.f OSJNEc Oryza sativa (j... 42 0.28
gb|CB662966.1|CB662966 OSJNEd07H08.f OSJNEd Oryza sativa (j... 42 0.28
gb|CF294491.1|CF294491 30DGS--04-A17.b1 Rice leaf plasmid c... 42 0.28
gb|CF308977.1|CF308977 ABF--02-P22.b1 ABF3-overexpressing t... 42 0.28
dbj|AP004265.1| Oryza sativa (japonica cultivar-group) chro... 42 0.28
dbj|AP004655.2| Oryza sativa (japonica cultivar-group) chro... 42 0.28
dbj|AP005423.1| Oryza sativa (japonica cultivar-group) chro... 42 0.28
dbj|AK067272.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.28
dbj|AK070781.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.28
dbj|AK106089.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.28
dbj|AK106439.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.28
dbj|AK106870.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.28
dbj|AP005415.2| Oryza sativa (japonica cultivar-group) geno... 42 0.28
gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbar... 42 0.28
gb|AC145480.2| Genomic sequence for Oryza sativa, Nipponbar... 42 0.28
dbj|AP005795.3| Oryza sativa (japonica cultivar-group) geno... 42 0.28
dbj|AP003840.2| Oryza sativa (japonica cultivar-group) geno... 42 0.28
dbj|AP004230.2| Oryza sativa (japonica cultivar-group) geno... 42 0.28
dbj|AP003915.4| Oryza sativa (japonica cultivar-group) geno... 42 0.28
dbj|AP004165.3| Oryza sativa (japonica cultivar-group) geno... 42 0.28
gb|AC130729.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
gb|AC130607.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
gb|AC093493.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
dbj|AP002860.1| Oryza sativa (japonica cultivar-group) geno... 42 0.28
dbj|AP002866.1| Oryza sativa (japonica cultivar-group) geno... 42 0.28
gb|AC084218.6| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
gb|AACV01001825.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
gb|AACV01005283.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
gb|AACV01006046.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
gb|AACV01007283.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
gb|AACV01010895.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
gb|AACV01012161.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
gb|AACV01016712.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
gb|AACV01016725.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
gb|AACV01017030.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
gb|AACV01017860.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
gb|AACV01018355.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
gb|AACV01018357.1| Oryza sativa (japonica cultivar-group) c... 42 0.28
ref|NM_192780.1| Oryza sativa (japonica cultivar-group), p... 42 0.28
ref|XM_463110.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.28
ref|XM_467450.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.28
ref|XM_479016.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.28
ref|XM_479045.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.28
ref|XM_481219.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.28
ref|XM_482141.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.28
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 42 0.28
ref|NT_107174.1| Oryza sativa (japonica cultivar-group) 42 0.28
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 42 0.28
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 42 0.28
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 42 0.28
ref|XM_506445.1| PREDICTED Oryza sativa (japonica cultivar-... 42 0.28
ref|NM_184201.2| Oryza sativa (japonica cultivar-group), mRNA 42 0.28
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 42 0.28
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 42 0.28
dbj|AP005099.2| Oryza sativa (japonica cultivar-group) geno... 42 0.28
dbj|AP005243.4| Oryza sativa (japonica cultivar-group) geno... 42 0.28
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 42 0.28
gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 ... 42 0.28
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.28
emb|CS137368.1| Sequence 339 from Patent WO2005047516 42 0.28
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.28
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 42 0.28
>dbj|AK058641.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-E01, full
insert sequence
Length = 1248
Score = 333 bits (168), Expect = 5e-089
Identities = 290/331 (87%)
Strand = Plus / Plus
Query: 169 gcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttcc 228
|||||||||| ||||||||||| || |||| ||| ||||| || ||||| ||||||||||
Sbjct: 275 gcgacctcctcgacggcgccgccctcctcgccgccgcgcggggctgctccggcgtcttcc 334
Query: 229 acctcgcgtcaccctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgc 288
||||||| || ||||||| ||| |||| |||| ||||||||| |||||||||||||
Sbjct: 335 acctcgcctccccctgcatcgtggaccgcgtcctcgacccccaggcgcagctgatggtgc 394
Query: 289 ctgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggc 348
| |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 395 cggcggtggaggggacgctgaacgtgctgcgcgcggccaaggacgccggcggagtgcggc 454
Query: 349 gggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtggcccgccggcg 408
||||||| ||||||||||||||||| ||| ||||||||| |||||| ||||| |||||||
Sbjct: 455 gggtggtggtgacctcgtccatctccgccatcgtgcccagccccggctggccggccggcg 514
Query: 409 aggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaagaacggggtttggt 468
|||| ||||||||| |||||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 515 aggtgcgcgacgagcgctgctggactgaccttgactactgcgagaagaacggggtttggt 574
Query: 469 accctgcttccaagacgctggcggagaaggc 499
|||||||||| || || |||| ||||||||
Sbjct: 575 accctgcttcaaaaacattggcagagaaggc 605
Score = 109 bits (55), Expect = 1e-021
Identities = 109/127 (85%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| || |||||||||||||||||| ||||| ||| ||||||||| |||||
Sbjct: 101 tggtcaccggcgcgagcggcttcatcggctcgtgtctcgttcgccgcctcctcgcccgcg 160
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| ||| ||| ||||||||||||||||
Sbjct: 161 gctactccgtccacgccgccgtcctcaaccccgatgactaggccgagacggaccacctcc 220
Query: 121 tcgcgct 127
||||||
Sbjct: 221 acgcgct 227
>ref|XM_470116.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1005
Score = 333 bits (168), Expect = 5e-089
Identities = 290/331 (87%)
Strand = Plus / Plus
Query: 169 gcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttcc 228
|||||||||| ||||||||||| || |||| ||| ||||| || ||||| ||||||||||
Sbjct: 218 gcgacctcctcgacggcgccgccctcctcgccgccgcgcggggctgctccggcgtcttcc 277
Query: 229 acctcgcgtcaccctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgc 288
||||||| || ||||||| ||| |||| |||| ||||||||| |||||||||||||
Sbjct: 278 acctcgcctccccctgcatcgtggaccgcgtcctcgacccccaggcgcagctgatggtgc 337
Query: 289 ctgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggc 348
| |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 338 cggcggtggaggggacgctgaacgtgctgcgcgcggccaaggacgccggcggagtgcggc 397
Query: 349 gggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtggcccgccggcg 408
||||||| ||||||||||||||||| ||| ||||||||| |||||| ||||| |||||||
Sbjct: 398 gggtggtggtgacctcgtccatctccgccatcgtgcccagccccggctggccggccggcg 457
Query: 409 aggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaagaacggggtttggt 468
|||| ||||||||| |||||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 458 aggtgcgcgacgagcgctgctggactgaccttgactactgcgagaagaacggggtttggt 517
Query: 469 accctgcttccaagacgctggcggagaaggc 499
|||||||||| || || |||| ||||||||
Sbjct: 518 accctgcttcaaaaacattggcagagaaggc 548
Score = 117 bits (59), Expect = 6e-024
Identities = 110/127 (86%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| || |||||||||||||||||| ||||| ||| ||||||||| |||||
Sbjct: 44 tggtcaccggcgcgagcggcttcatcggctcgtgtctcgttcgccgcctcctcgcccgcg 103
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
||||| ||||| ||||| ||||||| ||||||| |||| ||| ||||||||||||||||
Sbjct: 104 gctactccgtccacgccgccgtcctcaaccccgatgacaaggccgagacggaccacctcc 163
Query: 121 tcgcgct 127
||||||
Sbjct: 164 acgcgct 170
>gb|D15747.1|D15747 RICC1183A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1183A, mRNA sequence
Length = 500
Score = 268 bits (135), Expect = 3e-069
Identities = 269/310 (86%), Gaps = 3/310 (0%)
Strand = Plus / Plus
Query: 169 gcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttcc 228
|||||||||| ||||||||||| || |||| ||| ||||| || ||||| ||||||||||
Sbjct: 63 gcgacctcctcgacggcgccgccctcctcgccgccgcgcggggctgctccggcgtcttcc 122
Query: 229 acctcgcgtcaccctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgc 288
||||||| || ||||||| ||| |||| |||| ||||||||| ||| |||||||||
Sbjct: 123 acctcgcctccccctgcatcgtggaccgcgtcctcgacccccaggcgcag-tgatggtgc 181
Query: 289 ctgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggc 348
| |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 182 cggcggtggaggggacgctgaacgtgctgcgcgcggccaaggacgccggcggagtgcggc 241
Query: 349 gggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtggcccgccggcg 408
||||||| ||||||||||||||||| ||| ||||||||| |||||| ||||| |||||||
Sbjct: 242 gggtggtggtgacctcgtccatctccgccatcgtgcccagccccggctggccggccggcg 301
Query: 409 aggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaagaacgggg-tttgg 467
|||| ||||||| |||||||||| || | ||||||| |||||||||||||| |||||
Sbjct: 302 aggtgcgcgacgag-gttgctggactgaacttgactacttcgagaagaacggggttttgg 360
Query: 468 taccctgctt 477
|| |||||||
Sbjct: 361 taacctgctt 370
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete
sequence
Length = 172337
Score = 240 bits (121), Expect = 6e-061
Identities = 171/188 (90%)
Strand = Plus / Minus
Query: 276 cagctgatggtgcctgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgcc 335
|||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 20716 cagctgatggtgccggcggtggaggggacgctgaacgtgctgcgcgcggccaaggacgcc 20657
Query: 336 ggcggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccggg 395
|||||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||
Sbjct: 20656 ggcggagtgcggcgggtggtggtgacctcgtccatctccgccatcgtgcccagccccggc 20597
Query: 396 tggcccgccggcgaggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaag 455
||||| ||||||||||| ||||||||| |||||||| ||| | |||||||||||||||
Sbjct: 20596 tggccggccggcgaggtgcgcgacgagcgctgctggactgaccttgactactgcgagaag 20537
Query: 456 aacggggt 463
||||||||
Sbjct: 20536 aacggggt 20529
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| || |||||||||||||||||| ||||| ||| ||||||||| |||||
Sbjct: 21190 tggtcaccggcgcgagcggcttcatcggctcgtgtctcgttcgccgcctcctcgcccgcg 21131
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccg 93
||||| ||||| ||||| ||||||| ||||||
Sbjct: 21130 gctactccgtccacgccgccgtcctcaaccccg 21098
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 169 gcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttcc 228
|||||||||| ||||||||||| || |||| ||| ||||| || ||||| ||||||||||
Sbjct: 20933 gcgacctcctcgacggcgccgccctcctcgccgccgcgcggggctgctccggcgtcttcc 20874
Query: 229 acctcgcgtcaccctgcaccgtcgaccccgtc 260
||||||| || ||||||| ||| |||| ||||
Sbjct: 20873 acctcgcctccccctgcatcgtggaccgcgtc 20842
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
sequence
Length = 163828
Score = 240 bits (121), Expect = 6e-061
Identities = 171/188 (90%)
Strand = Plus / Plus
Query: 276 cagctgatggtgcctgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgcc 335
|||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 787 cagctgatggtgccggcggtggaggggacgctgaacgtgctgcgcgcggccaaggacgcc 846
Query: 336 ggcggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccggg 395
|||||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||
Sbjct: 847 ggcggagtgcggcgggtggtggtgacctcgtccatctccgccatcgtgcccagccccggc 906
Query: 396 tggcccgccggcgaggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaag 455
||||| ||||||||||| ||||||||| |||||||| ||| | |||||||||||||||
Sbjct: 907 tggccggccggcgaggtgcgcgacgagcgctgctggactgaccttgactactgcgagaag 966
Query: 456 aacggggt 463
||||||||
Sbjct: 967 aacggggt 974
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| || |||||||||||||||||| ||||| ||| ||||||||| |||||
Sbjct: 313 tggtcaccggcgcgagcggcttcatcggctcgtgtctcgttcgccgcctcctcgcccgcg 372
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccg 93
||||| ||||| ||||| ||||||| ||||||
Sbjct: 373 gctactccgtccacgccgccgtcctcaaccccg 405
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 169 gcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttcc 228
|||||||||| ||||||||||| || |||| ||| ||||| || ||||| ||||||||||
Sbjct: 570 gcgacctcctcgacggcgccgccctcctcgccgccgcgcggggctgctccggcgtcttcc 629
Query: 229 acctcgcgtcaccctgcaccgtcgaccccgtc 260
||||||| || ||||||| ||| |||| ||||
Sbjct: 630 acctcgcctccccctgcatcgtggaccgcgtc 661
>gb|AACV01008169.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008169, whole
genome shotgun sequence
Length = 30261
Score = 240 bits (121), Expect = 6e-061
Identities = 171/188 (90%)
Strand = Plus / Minus
Query: 276 cagctgatggtgcctgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgcc 335
|||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 13856 cagctgatggtgccggcggtggaggggacgctgaacgtgctgcgcgcggccaaggacgcc 13797
Query: 336 ggcggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccggg 395
|||||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||
Sbjct: 13796 ggcggagtgcggcgggtggtggtgacctcgtccatctccgccatcgtgcccagccccggc 13737
Query: 396 tggcccgccggcgaggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaag 455
||||| ||||||||||| ||||||||| |||||||| ||| | |||||||||||||||
Sbjct: 13736 tggccggccggcgaggtgcgcgacgagcgctgctggactgaccttgactactgcgagaag 13677
Query: 456 aacggggt 463
||||||||
Sbjct: 13676 aacggggt 13669
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| || |||||||||||||||||| ||||| ||| ||||||||| |||||
Sbjct: 14330 tggtcaccggcgcgagcggcttcatcggctcgtgtctcgttcgccgcctcctcgcccgcg 14271
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccg 93
||||| ||||| ||||| ||||||| ||||||
Sbjct: 14270 gctactccgtccacgccgccgtcctcaaccccg 14238
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 169 gcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttcc 228
|||||||||| ||||||||||| || |||| ||| ||||| || ||||| ||||||||||
Sbjct: 14073 gcgacctcctcgacggcgccgccctcctcgccgccgcgcggggctgctccggcgtcttcc 14014
Query: 229 acctcgcgtcaccctgcaccgtcgaccccgtc 260
||||||| || ||||||| ||| |||| ||||
Sbjct: 14013 acctcgcctccccctgcatcgtggaccgcgtc 13982
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 240 bits (121), Expect = 6e-061
Identities = 171/188 (90%)
Strand = Plus / Plus
Query: 276 cagctgatggtgcctgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgcc 335
|||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 693382 cagctgatggtgccggcggtggaggggacgctgaacgtgctgcgcgcggccaaggacgcc 693441
Query: 336 ggcggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccggg 395
|||||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||
Sbjct: 693442 ggcggagtgcggcgggtggtggtgacctcgtccatctccgccatcgtgcccagccccggc 693501
Query: 396 tggcccgccggcgaggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaag 455
||||| ||||||||||| ||||||||| |||||||| ||| | |||||||||||||||
Sbjct: 693502 tggccggccggcgaggtgcgcgacgagcgctgctggactgaccttgactactgcgagaag 693561
Query: 456 aacggggt 463
||||||||
Sbjct: 693562 aacggggt 693569
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| || |||||||||||||||||| ||||| ||| ||||||||| |||||
Sbjct: 692908 tggtcaccggcgcgagcggcttcatcggctcgtgtctcgttcgccgcctcctcgcccgcg 692967
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccg 93
||||| ||||| ||||| ||||||| ||||||
Sbjct: 692968 gctactccgtccacgccgccgtcctcaaccccg 693000
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 169 gcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttcc 228
|||||||||| ||||||||||| || |||| ||| ||||| || ||||| ||||||||||
Sbjct: 693165 gcgacctcctcgacggcgccgccctcctcgccgccgcgcggggctgctccggcgtcttcc 693224
Query: 229 acctcgcgtcaccctgcaccgtcgaccccgtc 260
||||||| || ||||||| ||| |||| ||||
Sbjct: 693225 acctcgcctccccctgcatcgtggaccgcgtc 693256
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 240 bits (121), Expect = 6e-061
Identities = 171/188 (90%)
Strand = Plus / Plus
Query: 276 cagctgatggtgcctgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgcc 335
|||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 7715609 cagctgatggtgccggcggtggaggggacgctgaacgtgctgcgcgcggccaaggacgcc 7715668
Query: 336 ggcggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccggg 395
|||||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||
Sbjct: 7715669 ggcggagtgcggcgggtggtggtgacctcgtccatctccgccatcgtgcccagccccggc 7715728
Query: 396 tggcccgccggcgaggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaag 455
||||| ||||||||||| ||||||||| |||||||| ||| | |||||||||||||||
Sbjct: 7715729 tggccggccggcgaggtgcgcgacgagcgctgctggactgaccttgactactgcgagaag 7715788
Query: 456 aacggggt 463
||||||||
Sbjct: 7715789 aacggggt 7715796
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| || |||||||||||||||||| ||||| ||| ||||||||| |||||
Sbjct: 7715135 tggtcaccggcgcgagcggcttcatcggctcgtgtctcgttcgccgcctcctcgcccgcg 7715194
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccg 93
||||| ||||| ||||| ||||||| ||||||
Sbjct: 7715195 gctactccgtccacgccgccgtcctcaaccccg 7715227
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 169 gcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttcc 228
|||||||||| ||||||||||| || |||| ||| ||||| || ||||| ||||||||||
Sbjct: 7715392 gcgacctcctcgacggcgccgccctcctcgccgccgcgcggggctgctccggcgtcttcc 7715451
Query: 229 acctcgcgtcaccctgcaccgtcgaccccgtc 260
||||||| || ||||||| ||| |||| ||||
Sbjct: 7715452 acctcgcctccccctgcatcgtggaccgcgtc 7715483
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 240 bits (121), Expect = 6e-061
Identities = 171/188 (90%)
Strand = Plus / Plus
Query: 276 cagctgatggtgcctgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgcc 335
|||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 34981772 cagctgatggtgccggcggtggaggggacgctgaacgtgctgcgcgcggccaaggacgcc 34981831
Query: 336 ggcggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccggg 395
|||||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||
Sbjct: 34981832 ggcggagtgcggcgggtggtggtgacctcgtccatctccgccatcgtgcccagccccggc 34981891
Query: 396 tggcccgccggcgaggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaag 455
||||| ||||||||||| ||||||||| |||||||| ||| | |||||||||||||||
Sbjct: 34981892 tggccggccggcgaggtgcgcgacgagcgctgctggactgaccttgactactgcgagaag 34981951
Query: 456 aacggggt 463
||||||||
Sbjct: 34981952 aacggggt 34981959
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| || |||||||||||||||||| ||||| ||| ||||||||| |||||
Sbjct: 34981298 tggtcaccggcgcgagcggcttcatcggctcgtgtctcgttcgccgcctcctcgcccgcg 34981357
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccg 93
||||| ||||| ||||| ||||||| ||||||
Sbjct: 34981358 gctactccgtccacgccgccgtcctcaaccccg 34981390
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 169 gcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttcc 228
|||||||||| ||||||||||| || |||| ||| ||||| || ||||| ||||||||||
Sbjct: 34981555 gcgacctcctcgacggcgccgccctcctcgccgccgcgcggggctgctccggcgtcttcc 34981614
Query: 229 acctcgcgtcaccctgcaccgtcgaccccgtc 260
||||||| || ||||||| ||| |||| ||||
Sbjct: 34981615 acctcgcctccccctgcatcgtggaccgcgtc 34981646
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 133 gcggcgccggcgccggccgcc 153
|||||||||||||||||||||
Sbjct: 23186127 gcggcgccggcgccggccgcc 23186147
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 132 ggcggcgccggcgccggccgc 152
|||||||||||||||||||||
Sbjct: 5228988 ggcggcgccggcgccggccgc 5228968
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 240 bits (121), Expect = 6e-061
Identities = 171/188 (90%)
Strand = Plus / Plus
Query: 276 cagctgatggtgcctgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgcc 335
|||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 34127447 cagctgatggtgccggcggtggaggggacgctgaacgtgctgcgcgcggccaaggacgcc 34127506
Query: 336 ggcggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccggg 395
|||||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||
Sbjct: 34127507 ggcggagtgcggcgggtggtggtgacctcgtccatctccgccatcgtgcccagccccggc 34127566
Query: 396 tggcccgccggcgaggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaag 455
||||| ||||||||||| ||||||||| |||||||| ||| | |||||||||||||||
Sbjct: 34127567 tggccggccggcgaggtgcgcgacgagcgctgctggactgaccttgactactgcgagaag 34127626
Query: 456 aacggggt 463
||||||||
Sbjct: 34127627 aacggggt 34127634
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| || |||||||||||||||||| ||||| ||| ||||||||| |||||
Sbjct: 34126973 tggtcaccggcgcgagcggcttcatcggctcgtgtctcgttcgccgcctcctcgcccgcg 34127032
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccg 93
||||| ||||| ||||| ||||||| ||||||
Sbjct: 34127033 gctactccgtccacgccgccgtcctcaaccccg 34127065
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 169 gcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttcc 228
|||||||||| ||||||||||| || |||| ||| ||||| || ||||| ||||||||||
Sbjct: 34127230 gcgacctcctcgacggcgccgccctcctcgccgccgcgcggggctgctccggcgtcttcc 34127289
Query: 229 acctcgcgtcaccctgcaccgtcgaccccgtc 260
||||||| || ||||||| ||| |||| ||||
Sbjct: 34127290 acctcgcctccccctgcatcgtggaccgcgtc 34127321
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 133 gcggcgccggcgccggccgcc 153
|||||||||||||||||||||
Sbjct: 22547556 gcggcgccggcgccggccgcc 22547576
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 132 ggcggcgccggcgccggccgc 152
|||||||||||||||||||||
Sbjct: 5032498 ggcggcgccggcgccggccgc 5032478
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 240 bits (121), Expect = 6e-061
Identities = 171/188 (90%)
Strand = Plus / Plus
Query: 276 cagctgatggtgcctgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgcc 335
|||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 34036975 cagctgatggtgccggcggtggaggggacgctgaacgtgctgcgcgcggccaaggacgcc 34037034
Query: 336 ggcggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccggg 395
|||||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||
Sbjct: 34037035 ggcggagtgcggcgggtggtggtgacctcgtccatctccgccatcgtgcccagccccggc 34037094
Query: 396 tggcccgccggcgaggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaag 455
||||| ||||||||||| ||||||||| |||||||| ||| | |||||||||||||||
Sbjct: 34037095 tggccggccggcgaggtgcgcgacgagcgctgctggactgaccttgactactgcgagaag 34037154
Query: 456 aacggggt 463
||||||||
Sbjct: 34037155 aacggggt 34037162
Score = 81.8 bits (41), Expect = 3e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| || |||||||||||||||||| ||||| ||| ||||||||| |||||
Sbjct: 34036501 tggtcaccggcgcgagcggcttcatcggctcgtgtctcgttcgccgcctcctcgcccgcg 34036560
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccg 93
||||| ||||| ||||| ||||||| ||||||
Sbjct: 34036561 gctactccgtccacgccgccgtcctcaaccccg 34036593
Score = 79.8 bits (40), Expect = 1e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 169 gcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttcc 228
|||||||||| ||||||||||| || |||| ||| ||||| || ||||| ||||||||||
Sbjct: 34036758 gcgacctcctcgacggcgccgccctcctcgccgccgcgcggggctgctccggcgtcttcc 34036817
Query: 229 acctcgcgtcaccctgcaccgtcgaccccgtc 260
||||||| || ||||||| ||| |||| ||||
Sbjct: 34036818 acctcgcctccccctgcatcgtggaccgcgtc 34036849
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 133 gcggcgccggcgccggccgcc 153
|||||||||||||||||||||
Sbjct: 22554527 gcggcgccggcgccggccgcc 22554547
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 132 ggcggcgccggcgccggccgc 152
|||||||||||||||||||||
Sbjct: 5033283 ggcggcgccggcgccggccgc 5033263
>gb|AACV01002608.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002608, whole
genome shotgun sequence
Length = 16375
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||
Sbjct: 13367 cagcggcttcatcggctcgtggctcgtccgcctcctcctcgaccgcggctacaccgtcca 13308
Query: 74 cgcc 77
||||
Sbjct: 13307 cgcc 13304
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||
Sbjct: 35504961 cagcggcttcatcggctcgtggctcgtccgcctcctcctcgaccgcggctacaccgtcca 35505020
Query: 74 cgcc 77
||||
Sbjct: 35505021 cgcc 35505024
Score = 58.0 bits (29), Expect = 5e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 339 ggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtgg 398
|||| |||||| ||||| ||||| || |||||||| ||| | ||||||||||| |||| |
Sbjct: 43317647 ggagcgcggcgcgtggtggtgacgtcctccatctcagccatggtgcccaacccggggttg 43317706
Query: 399 cccgccggcgaggtcgtcgacgagcgttgctggaccgacat 439
| || || ||| ||||||||||||| ||||||| |||||
Sbjct: 43317707 gcggcgggagagctcgtcgacgagcgaagctggacggacat 43317747
Score = 44.1 bits (22), Expect = 0.072
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 477 tccaagacgctggcggagaaggcggcgtgg 506
|||||||||||||| |||| ||||||||||
Sbjct: 43317785 tccaagacgctggccgagagggcggcgtgg 43317814
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 132 ggcggcgccggcgccggccgc 152
|||||||||||||||||||||
Sbjct: 24455200 ggcggcgccggcgccggccgc 24455180
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 478 ccaagacgctggcggagaaggcggcgtgg 506
|||||||||||||||||| || |||||||
Sbjct: 1510592 ccaagacgctggcggagagggaggcgtgg 1510620
>ref|NM_190422.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 981
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||
Sbjct: 51 cagcggcttcatcggctcgtggctcgtccgcctcctcctcgaccgcggctacaccgtcca 110
Query: 74 cgcc 77
||||
Sbjct: 111 cgcc 114
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||
Sbjct: 9952344 cagcggcttcatcggctcgtggctcgtccgcctcctcctcgaccgcggctacaccgtcca 9952403
Query: 74 cgcc 77
||||
Sbjct: 9952404 cgcc 9952407
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1088C09
Length = 154084
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||
Sbjct: 48240 cagcggcttcatcggctcgtggctcgtccgcctcctcctcgaccgcggctacaccgtcca 48299
Query: 74 cgcc 77
||||
Sbjct: 48300 cgcc 48303
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||
Sbjct: 9708641 cagcggcttcatcggctcgtggctcgtccgcctcctcctcgaccgcggctacaccgtcca 9708700
Query: 74 cgcc 77
||||
Sbjct: 9708701 cgcc 9708704
Score = 58.0 bits (29), Expect = 5e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 339 ggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtgg 398
|||| |||||| ||||| ||||| || |||||||| ||| | ||||||||||| |||| |
Sbjct: 17379028 ggagcgcggcgcgtggtggtgacgtcctccatctcagccatggtgcccaacccggggttg 17379087
Query: 399 cccgccggcgaggtcgtcgacgagcgttgctggaccgacat 439
| || || ||| ||||||||||||| ||||||| |||||
Sbjct: 17379088 gcggcgggagagctcgtcgacgagcgaagctggacggacat 17379128
Score = 44.1 bits (22), Expect = 0.072
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 477 tccaagacgctggcggagaaggcggcgtgg 506
|||||||||||||| |||| ||||||||||
Sbjct: 17379167 tccaagacgctggccgagagggcggcgtgg 17379196
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||
Sbjct: 34910362 cagcggcttcatcggctcgtggctcgtccgcctcctcctcgaccgcggctacaccgtcca 34910421
Query: 74 cgcc 77
||||
Sbjct: 34910422 cgcc 34910425
Score = 58.0 bits (29), Expect = 5e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 339 ggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtgg 398
|||| |||||| ||||| ||||| || |||||||| ||| | ||||||||||| |||| |
Sbjct: 42580749 ggagcgcggcgcgtggtggtgacgtcctccatctcagccatggtgcccaacccggggttg 42580808
Query: 399 cccgccggcgaggtcgtcgacgagcgttgctggaccgacat 439
| || || ||| ||||||||||||| ||||||| |||||
Sbjct: 42580809 gcggcgggagagctcgtcgacgagcgaagctggacggacat 42580849
Score = 44.1 bits (22), Expect = 0.072
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 477 tccaagacgctggcggagaaggcggcgtgg 506
|||||||||||||| |||| ||||||||||
Sbjct: 42580888 tccaagacgctggccgagagggcggcgtgg 42580917
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 132 ggcggcgccggcgccggccgc 152
|||||||||||||||||||||
Sbjct: 23959872 ggcggcgccggcgccggccgc 23959852
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||
Sbjct: 35424291 cagcggcttcatcggctcgtggctcgtccgcctcctcctcgaccgcggctacaccgtcca 35424350
Query: 74 cgcc 77
||||
Sbjct: 35424351 cgcc 35424354
Score = 58.0 bits (29), Expect = 5e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 339 ggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtgg 398
|||| |||||| ||||| ||||| || |||||||| ||| | ||||||||||| |||| |
Sbjct: 43236977 ggagcgcggcgcgtggtggtgacgtcctccatctcagccatggtgcccaacccggggttg 43237036
Query: 399 cccgccggcgaggtcgtcgacgagcgttgctggaccgacat 439
| || || ||| ||||||||||||| ||||||| |||||
Sbjct: 43237037 gcggcgggagagctcgtcgacgagcgaagctggacggacat 43237077
Score = 44.1 bits (22), Expect = 0.072
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 477 tccaagacgctggcggagaaggcggcgtgg 506
|||||||||||||| |||| ||||||||||
Sbjct: 43237115 tccaagacgctggccgagagggcggcgtgg 43237144
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 132 ggcggcgccggcgccggccgc 152
|||||||||||||||||||||
Sbjct: 24376483 ggcggcgccggcgccggccgc 24376463
Score = 42.1 bits (21), Expect = 0.28
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 478 ccaagacgctggcggagaaggcggcgtgg 506
|||||||||||||||||| || |||||||
Sbjct: 1512790 ccaagacgctggcggagagggaggcgtgg 1512818
>dbj|AK062411.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F01, full
insert sequence
Length = 1175
Score = 58.0 bits (29), Expect = 5e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 339 ggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtgg 398
|||| |||||| ||||| ||||| || |||||||| ||| | ||||||||||| |||| |
Sbjct: 402 ggagcgcggcgcgtggtggtgacgtcctccatctcagccatggtgcccaacccggggttg 461
Query: 399 cccgccggcgaggtcgtcgacgagcgttgctggaccgacat 439
| || || ||| ||||||||||||| ||||||| |||||
Sbjct: 462 gcggcgggagagctcgtcgacgagcgaagctggacggacat 502
Score = 44.1 bits (22), Expect = 0.072
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 477 tccaagacgctggcggagaaggcggcgtgg 506
|||||||||||||| |||| ||||||||||
Sbjct: 540 tccaagacgctggccgagagggcggcgtgg 569
>gb|AACV01003141.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003141, whole
genome shotgun sequence
Length = 4281
Score = 58.0 bits (29), Expect = 5e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 339 ggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtgg 398
|||| |||||| ||||| ||||| || |||||||| ||| | ||||||||||| |||| |
Sbjct: 1979 ggagcgcggcgcgtggtggtgacgtcctccatctcagccatggtgcccaacccggggttg 2038
Query: 399 cccgccggcgaggtcgtcgacgagcgttgctggaccgacat 439
| || || ||| ||||||||||||| ||||||| |||||
Sbjct: 2039 gcggcgggagagctcgtcgacgagcgaagctggacggacat 2079
Score = 44.1 bits (22), Expect = 0.072
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 477 tccaagacgctggcggagaaggcggcgtgg 506
|||||||||||||| |||| ||||||||||
Sbjct: 2118 tccaagacgctggccgagagggcggcgtgg 2147
>ref|NM_189520.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 984
Score = 58.0 bits (29), Expect = 5e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 339 ggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtgg 398
|||| |||||| ||||| ||||| || |||||||| ||| | ||||||||||| |||| |
Sbjct: 349 ggagcgcggcgcgtggtggtgacgtcctccatctcagccatggtgcccaacccggggttg 408
Query: 399 cccgccggcgaggtcgtcgacgagcgttgctggaccgacat 439
| || || ||| ||||||||||||| ||||||| |||||
Sbjct: 409 gcggcgggagagctcgtcgacgagcgaagctggacggacat 449
Score = 44.1 bits (22), Expect = 0.072
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 477 tccaagacgctggcggagaaggcggcgtgg 506
|||||||||||||| |||| ||||||||||
Sbjct: 487 tccaagacgctggccgagagggcggcgtgg 516
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 58.0 bits (29), Expect = 5e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 339 ggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtgg 398
|||| |||||| ||||| ||||| || |||||||| ||| | ||||||||||| |||| |
Sbjct: 2945941 ggagcgcggcgcgtggtggtgacgtcctccatctcagccatggtgcccaacccggggttg 2946000
Query: 399 cccgccggcgaggtcgtcgacgagcgttgctggaccgacat 439
| || || ||| ||||||||||||| ||||||| |||||
Sbjct: 2946001 gcggcgggagagctcgtcgacgagcgaagctggacggacat 2946041
Score = 44.1 bits (22), Expect = 0.072
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 477 tccaagacgctggcggagaaggcggcgtgg 506
|||||||||||||| |||| ||||||||||
Sbjct: 2946079 tccaagacgctggccgagagggcggcgtgg 2946108
>dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0020E09
Length = 149195
Score = 58.0 bits (29), Expect = 5e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 339 ggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtgg 398
|||| |||||| ||||| ||||| || |||||||| ||| | ||||||||||| |||| |
Sbjct: 124432 ggagcgcggcgcgtggtggtgacgtcctccatctcagccatggtgcccaacccggggttg 124491
Query: 399 cccgccggcgaggtcgtcgacgagcgttgctggaccgacat 439
| || || ||| ||||||||||||| ||||||| |||||
Sbjct: 124492 gcggcgggagagctcgtcgacgagcgaagctggacggacat 124532
Score = 44.1 bits (22), Expect = 0.072
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 477 tccaagacgctggcggagaaggcggcgtgg 506
|||||||||||||| |||| ||||||||||
Sbjct: 124570 tccaagacgctggccgagagggcggcgtgg 124599
>dbj|AP007260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
fosmid clone: OSJNOa275J08
Length = 36356
Score = 58.0 bits (29), Expect = 5e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 339 ggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtgg 398
|||| |||||| ||||| ||||| || |||||||| ||| | ||||||||||| |||| |
Sbjct: 11052 ggagcgcggcgcgtggtggtgacgtcctccatctcagccatggtgcccaacccggggttg 11111
Query: 399 cccgccggcgaggtcgtcgacgagcgttgctggaccgacat 439
| || || ||| ||||||||||||| ||||||| |||||
Sbjct: 11112 gcggcgggagagctcgtcgacgagcgaagctggacggacat 11152
Score = 44.1 bits (22), Expect = 0.072
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 477 tccaagacgctggcggagaaggcggcgtgg 506
|||||||||||||| |||| ||||||||||
Sbjct: 11190 tccaagacgctggccgagagggcggcgtgg 11219
>dbj|AK062591.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H01, full
insert sequence
Length = 1424
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 480 aagacgctggcggagaaggcggcgtgga 507
|||||| |||||||||||||||||||||
Sbjct: 811 aagacgatggcggagaaggcggcgtgga 838
>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10,
complete sequence
Length = 127304
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 480 aagacgctggcggagaaggcggcgtgga 507
|||||| |||||||||||||||||||||
Sbjct: 107888 aagacgatggcggagaaggcggcgtgga 107915
>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0017N18, complete sequence
Length = 156643
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 480 aagacgctggcggagaaggcggcgtgga 507
|||||| |||||||||||||||||||||
Sbjct: 7987 aagacgatggcggagaaggcggcgtgga 8014
>gb|AACV01012761.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012761, whole
genome shotgun sequence
Length = 32379
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 480 aagacgctggcggagaaggcggcgtgga 507
|||||| |||||||||||||||||||||
Sbjct: 6608 aagacgatggcggagaaggcggcgtgga 6635
>ref|XM_475941.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1140
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 480 aagacgctggcggagaaggcggcgtgga 507
|||||| |||||||||||||||||||||
Sbjct: 658 aagacgatggcggagaaggcggcgtgga 685
>ref|NT_107222.1| Oryza sativa (japonica cultivar-group)
Length = 1298239
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 480 aagacgctggcggagaaggcggcgtgga 507
|||||| |||||||||||||||||||||
Sbjct: 215119 aagacgatggcggagaaggcggcgtgga 215146
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 480 aagacgctggcggagaaggcggcgtgga 507
|||||| |||||||||||||||||||||
Sbjct: 10995406 aagacgatggcggagaaggcggcgtgga 10995433
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 129 gggggcggcgccggcgccggc 149
|||||||||||||||||||||
Sbjct: 2378901 gggggcggcgccggcgccggc 2378881
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 480 aagacgctggcggagaaggcggcgtgga 507
|||||| |||||||||||||||||||||
Sbjct: 28295719 aagacgatggcggagaaggcggcgtgga 28295746
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 129 gggggcggcgccggcgccggc 149
|||||||||||||||||||||
Sbjct: 19679214 gggggcggcgccggcgccggc 19679194
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 129 gggggcggcgccggcgccggc 149
|||||||||||||||||||||
Sbjct: 2951115 gggggcggcgccggcgccggc 2951095
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 480 aagacgctggcggagaaggcggcgtgga 507
|||||| |||||||||||||||||||||
Sbjct: 28580195 aagacgatggcggagaaggcggcgtgga 28580222
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 129 gggggcggcgccggcgccggc 149
|||||||||||||||||||||
Sbjct: 20011219 gggggcggcgccggcgccggc 20011199
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 129 gggggcggcgccggcgccggc 149
|||||||||||||||||||||
Sbjct: 2924799 gggggcggcgccggcgccggc 2924779
>dbj|AK108192.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C03, full
insert sequence
Length = 1127
Score = 46.1 bits (23), Expect = 0.018
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 133 gcggcgccggcgccggccgcctc 155
|||||||||||||||||||||||
Sbjct: 99 gcggcgccggcgccggccgcctc 77
>dbj|AP003985.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1047_C01
Length = 97427
Score = 46.1 bits (23), Expect = 0.018
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 133 gcggcgccggcgccggccgcctc 155
|||||||||||||||||||||||
Sbjct: 31374 gcggcgccggcgccggccgcctc 31396
>ref|XM_478925.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1126
Score = 46.1 bits (23), Expect = 0.018
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 133 gcggcgccggcgccggccgcctc 155
|||||||||||||||||||||||
Sbjct: 99 gcggcgccggcgccggccgcctc 77
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 46.1 bits (23), Expect = 0.018
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 133 gcggcgccggcgccggccgcctc 155
|||||||||||||||||||||||
Sbjct: 11455879 gcggcgccggcgccggccgcctc 11455901
Score = 42.1 bits (21), Expect = 0.28
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 131 gggcggcgccggcgccggccgcctc 155
|||||||||||| ||||||||||||
Sbjct: 16414069 gggcggcgccggtgccggccgcctc 16414093
Score = 42.1 bits (21), Expect = 0.28
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 3 gtcaccggggccagcggcttcatcg 27
||||||||||||||||||| |||||
Sbjct: 12077090 gtcaccggggccagcggctacatcg 12077066
Score = 42.1 bits (21), Expect = 0.28
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3 gtcaccggggccagcggcttcatcg 27
||||||||||||||||||| |||||
Sbjct: 11943934 gtcaccggggccagcggctacatcg 11943958
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 46.1 bits (23), Expect = 0.018
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 133 gcggcgccggcgccggccgcctc 155
|||||||||||||||||||||||
Sbjct: 23842874 gcggcgccggcgccggccgcctc 23842896
Score = 42.1 bits (21), Expect = 0.28
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 131 gggcggcgccggcgccggccgcctc 155
|||||||||||| ||||||||||||
Sbjct: 28801064 gggcggcgccggtgccggccgcctc 28801088
Score = 42.1 bits (21), Expect = 0.28
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 3 gtcaccggggccagcggcttcatcg 27
||||||||||||||||||| |||||
Sbjct: 24464085 gtcaccggggccagcggctacatcg 24464061
Score = 42.1 bits (21), Expect = 0.28
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3 gtcaccggggccagcggcttcatcg 27
||||||||||||||||||| |||||
Sbjct: 24330929 gtcaccggggccagcggctacatcg 24330953
>gb|AQ509690.1|AQ509690 nbxb0096F10f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0096F10f, DNA sequence
Length = 561
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 ggcggcgccggcgccggccgcc 153
||||||||||||||||||||||
Sbjct: 176 ggcggcgccggcgccggccgcc 197
>gb|AU063641.2|AU063641 AU063641 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C63350_1A, mRNA sequence
Length = 294
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 ggcggcgccggcgccggccgcc 153
||||||||||||||||||||||
Sbjct: 145 ggcggcgccggcgccggccgcc 166
>gb|AU163662.1|AU163662 AU163662 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3790, mRNA sequence
Length = 476
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 ggcggcgccggcgccggccgcc 153
||||||||||||||||||||||
Sbjct: 1 ggcggcgccggcgccggccgcc 22
>gb|AU164003.1|AU164003 AU164003 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11708, mRNA sequence
Length = 477
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 ggcggcgccggcgccggccgcc 153
||||||||||||||||||||||
Sbjct: 289 ggcggcgccggcgccggccgcc 310
>gb|CB642391.1|CB642391 OSJNEb02I20.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb02I20 5', mRNA sequence
Length = 730
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 ggcggcgccggcgccggccgcc 153
||||||||||||||||||||||
Sbjct: 435 ggcggcgccggcgccggccgcc 456
>gb|CB642392.1|CB642392 OSJNEb02I20.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb02I20 3', mRNA sequence
Length = 659
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 132 ggcggcgccggcgccggccgcc 153
||||||||||||||||||||||
Sbjct: 451 ggcggcgccggcgccggccgcc 430
>gb|CB645635.1|CB645635 OSJNEb07H18.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07H18 5', mRNA sequence
Length = 730
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 ggcggcgccggcgccggccgcc 153
||||||||||||||||||||||
Sbjct: 435 ggcggcgccggcgccggccgcc 456
>gb|CO435683.1|CO435683 OsMR749 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 813
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 ggcggcgccggcgccggccgcc 153
||||||||||||||||||||||
Sbjct: 538 ggcggcgccggcgccggccgcc 559
>gb|AU070136.2|AU070136 AU070136 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E41263_1A, mRNA sequence
Length = 237
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 ggcggcgccggcgccggccgcc 153
||||||||||||||||||||||
Sbjct: 181 ggcggcgccggcgccggccgcc 202
>gb|AC108756.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBa0046G16,
*** SEQUENCING IN PROGRESS ***, 6 ordered pieces
Length = 154082
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 132 ggcggcgccggcgccggccgcc 153
||||||||||||||||||||||
Sbjct: 120894 ggcggcgccggcgccggccgcc 120873
>dbj|AK073885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073G16, full
insert sequence
Length = 976
Score = 44.1 bits (22), Expect = 0.072
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 132 ggcggcgccggcgccggccgcc 153
||||||||||||||||||||||
Sbjct: 495 ggcggcgccggcgccggccgcc 516
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,128,260
Number of Sequences: 438736
Number of extensions: 1128260
Number of successful extensions: 65596
Number of sequences better than 0.5: 129
Number of HSP's better than 0.5 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58406
Number of HSP's gapped (non-prelim): 7188
length of query: 507
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 486
effective length of database: 2,791,206,460
effective search space: 1356526339560
effective search space used: 1356526339560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)