BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950292.2.1
(1205 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK067482.1| Oryza sativa (japonica cultivar-group) cDNA... 842 0.0
ref|XM_449984.1| Oryza sativa (japonica cultivar-group), mRNA 842 0.0
gb|CV721032.1|CV721032 YBH--02-K16.b1 Rice before heading y... 504 e-140
gb|D41158.1|D41158 RICS3464A Rice shoot Oryza sativa (japon... 301 5e-079
gb|D40862.1|D40862 RICS3040A Rice shoot Oryza sativa (japon... 295 3e-077
gb|C28667.1|C28667 C28667 Rice callus cDNA Oryza sativa (ja... 262 4e-067
gb|C97702.1|C97702 C97702 Rice callus Oryza sativa (japonic... 196 2e-047
gb|AACV01019041.1| Oryza sativa (japonica cultivar-group) c... 137 2e-029
ref|NT_107076.1| Oryza sativa (japonica cultivar-group) 137 2e-029
dbj|AP005787.3| Oryza sativa (japonica cultivar-group) geno... 137 2e-029
gb|CH401231.1| Oryza sativa (japonica cultivar-group) chrom... 137 2e-029
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 137 2e-029
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 137 2e-029
gb|AU172322.1|AU172322 AU172322 Rice callus (2001) Oryza sa... 84 2e-013
>dbj|AK067482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107E18, full
insert sequence
Length = 1160
Score = 842 bits (425), Expect = 0.0
Identities = 614/677 (90%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatgg 221
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct: 134 acctccgccgcatcgtcaagtggcaacaaatggatatcgagtacacattttggcaaatgg 193
Query: 222 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 281
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tccatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 253
Query: 282 agaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgt 341
|||| |||||||| || ||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct: 254 agaatcagtgggctcgggatgatcctgcttttgttgtcattctaattcttttccttgtgt 313
Query: 342 ttgcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctctaacaa 401
||||||||||||||||||||||||| |||||||||||| | |||||||||||| ||||||
Sbjct: 314 ttgcaacatcagcttactgtgcagcgtatggagagagtccttcacatgctgctttaacaa 373
Query: 402 tcacttcggttgtgtttctccatttcttgtttgctgggatagttttggccacactttgct 461
||||||| |||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 374 tcacttcagttgtgcttgtccatttcttgtttgctgggatagttctggccacactttgct 433
Query: 462 ggttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgcg 521
|||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 434 ggtttcttacaaattcttacttgagggaggaacctaacagtcatgtggttgagcaacgtg 493
Query: 522 tggagtggctctatgcatttgacgttcattgtaactcgttctttcctgcgtttgtcatcc 581
|||||||||||||||||||||| |||||||| ||||| ||||| || || ||||||||||
Sbjct: 494 tggagtggctctatgcatttgatgttcattgcaactcattcttcccagcctttgtcatcc 553
Query: 582 tatatgtggtgcagtattttctgtcgcctctattggtcgcgcatggcttctttccagctt 641
|||||||| | || |||||||| |||||||| |||||||| |||||||||||||| |||
Sbjct: 554 tatatgtgcttcaatattttctatcgcctctgttggtcgcacatggcttctttcctgctc 613
Query: 642 tgttatctaatctactcttcgtggtggcaatttcttattatcactacctgaactttctag 701
| ||||| || || | || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 614 tattatcaaacctcttgtttgtggtggcaatttcttattatcactacctgaattttctag 673
Query: 702 gatatgatgttcttccatttctagatagaacaacattcttcctgtatccgattggtctcg 761
|||||||||||||||||||| | || ||||||||||| ||| |||| |||||||| || |
Sbjct: 674 gatatgatgttcttccatttttggacagaacaacatttttcttgtacccgattgggcttg 733
Query: 762 tcatcatcctgtctccacttatgatactaatagggtttaatccgacaagatactttctaa 821
||||||| || |||||||| |||||||| |||||||| ||||| |||||||||||| | |
Sbjct: 734 tcatcattctctctccactgatgatactcatagggttcaatccaacaagatactttttga 793
Query: 822 gcttgtacttcggttaa 838
||||||||||| |||||
Sbjct: 794 gcttgtacttccgttaa 810
>ref|XM_449984.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1160
Score = 842 bits (425), Expect = 0.0
Identities = 614/677 (90%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatgg 221
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct: 134 acctccgccgcatcgtcaagtggcaacaaatggatatcgagtacacattttggcaaatgg 193
Query: 222 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 281
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tccatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 253
Query: 282 agaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgt 341
|||| |||||||| || ||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct: 254 agaatcagtgggctcgggatgatcctgcttttgttgtcattctaattcttttccttgtgt 313
Query: 342 ttgcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctctaacaa 401
||||||||||||||||||||||||| |||||||||||| | |||||||||||| ||||||
Sbjct: 314 ttgcaacatcagcttactgtgcagcgtatggagagagtccttcacatgctgctttaacaa 373
Query: 402 tcacttcggttgtgtttctccatttcttgtttgctgggatagttttggccacactttgct 461
||||||| |||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 374 tcacttcagttgtgcttgtccatttcttgtttgctgggatagttctggccacactttgct 433
Query: 462 ggttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgcg 521
|||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 434 ggtttcttacaaattcttacttgagggaggaacctaacagtcatgtggttgagcaacgtg 493
Query: 522 tggagtggctctatgcatttgacgttcattgtaactcgttctttcctgcgtttgtcatcc 581
|||||||||||||||||||||| |||||||| ||||| ||||| || || ||||||||||
Sbjct: 494 tggagtggctctatgcatttgatgttcattgcaactcattcttcccagcctttgtcatcc 553
Query: 582 tatatgtggtgcagtattttctgtcgcctctattggtcgcgcatggcttctttccagctt 641
|||||||| | || |||||||| |||||||| |||||||| |||||||||||||| |||
Sbjct: 554 tatatgtgcttcaatattttctatcgcctctgttggtcgcacatggcttctttcctgctc 613
Query: 642 tgttatctaatctactcttcgtggtggcaatttcttattatcactacctgaactttctag 701
| ||||| || || | || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 614 tattatcaaacctcttgtttgtggtggcaatttcttattatcactacctgaattttctag 673
Query: 702 gatatgatgttcttccatttctagatagaacaacattcttcctgtatccgattggtctcg 761
|||||||||||||||||||| | || ||||||||||| ||| |||| |||||||| || |
Sbjct: 674 gatatgatgttcttccatttttggacagaacaacatttttcttgtacccgattgggcttg 733
Query: 762 tcatcatcctgtctccacttatgatactaatagggtttaatccgacaagatactttctaa 821
||||||| || |||||||| |||||||| |||||||| ||||| |||||||||||| | |
Sbjct: 734 tcatcattctctctccactgatgatactcatagggttcaatccaacaagatactttttga 793
Query: 822 gcttgtacttcggttaa 838
||||||||||| |||||
Sbjct: 794 gcttgtacttccgttaa 810
>gb|CV721032.1|CV721032 YBH--02-K16.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--02-K16, mRNA sequence
Length = 455
Score = 504 bits (254), Expect = e-140
Identities = 318/340 (93%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatgg 221
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct: 116 acctccgccgcatcgtcaagtggcaacaaatggatatcgagtacacattttggcaaatgg 175
Query: 222 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 281
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tccatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 235
Query: 282 agaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgt 341
|||| |||||||| || ||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct: 236 agaatcagtgggctcgggatgatcctgcttttgttgtcattctaattcttttccttgtgt 295
Query: 342 ttgcaacatcagcttactgtgcagcatatggagagagtgcctcacatgctgctctaacaa 401
||||||||||||||||||||||||| |||||||||||| | |||||||||||| ||||||
Sbjct: 296 ttgcaacatcagcttactgtgcagcgtatggagagagtccttcacatgctgctntaacaa 355
Query: 402 tcacttcggttgtgtttctccatttcttgtttgctgggatagttttggccacactttgct 461
||||||| |||||| || |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 356 tcacttcagttgtgcttgtccatttcttgtttgctgggatagttctggccacactntgct 415
Query: 462 ggttccttacaaattcttacttgagagaggaacctaacag 501
|||| |||||||||||||||||||| ||||||||||||||
Sbjct: 416 ggtttcttacaaattcttacttgagggaggaacctaacag 455
>gb|D41158.1|D41158 RICS3464A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 332
Score = 301 bits (152), Expect = 5e-079
Identities = 201/218 (92%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatgg 221
||||||| || ||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct: 111 acctccgacgaatcgtcaagtggcaacaaatggatatcgagtacacattttggcaaatgg 170
Query: 222 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 281
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tccatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 230
Query: 282 agaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcctcgtgt 341
|||| |||||||| || |||||||||| |||||||| ||||| ||| ||||||| ||||
Sbjct: 231 agaatcagtgggctcgggatgatcctgnttttgttgtcattctaattattttccttgtgt 290
Query: 342 ttgcaacatcagcttactgtgcagcatatggagagagt 379
|||||||||||| |||||||||||| ||||||||||||
Sbjct: 291 ttgcaacatcagnttactgtgcagcgtatggagagagt 328
>gb|D40862.1|D40862 RICS3040A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 312
Score = 295 bits (149), Expect = 3e-077
Identities = 189/201 (94%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatgg 221
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct: 112 acctccgccgcatcgtcaagtggcaacaaatggatatcgagtacacattttggcaaatgg 171
Query: 222 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 281
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tccatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 231
Query: 282 agaaccagtgggcccgtgatgatcctgc-atttgttgttattctgattcttttcctcgtg 340
|||| |||||||| || ||||||||||| |||||||| ||||| ||||||||||| |||
Sbjct: 232 agaatcagtgggctcgggatgatcctgctttttgttgtcattctaattcttttccttgtg 291
Query: 341 tttgcaacatcagcttactgt 361
|||||||||||||||||||||
Sbjct: 292 tttgcaacatcagcttactgt 312
>gb|C28667.1|C28667 C28667 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61990_3A, mRNA sequence
Length = 299
Score = 262 bits (132), Expect = 4e-067
Identities = 164/175 (93%)
Strand = Plus / Plus
Query: 162 acctccgccgcatcgtcaagtggcaacaaagggatattgaatacacattttggcaaatgg 221
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct: 121 acctccgccgcatcgtcaagtggcaacaaatggatatcgagtacacattttggcaaatgg 180
Query: 222 ttcatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 281
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tccatctctgtacttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaa 240
Query: 282 agaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcct 336
|||| |||||||| || ||||||||||| |||||||| | ||| |||||||||||
Sbjct: 241 agaatcagtgggctcgggatgatcctgcttttgttgtcantctaattcttttcct 295
>gb|C97702.1|C97702 C97702 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61788_2A, mRNA sequence
Length = 292
Score = 196 bits (99), Expect = 2e-047
Identities = 140/153 (91%), Gaps = 1/153 (0%)
Strand = Plus / Plus
Query: 173 atcgtcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgt 232
||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||
Sbjct: 136 atcgtcaagtggcaacaaatngatatcgagtacacattttggcaaatggtccatctctgt 195
Query: 233 acttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaa-gaaccagtg 291
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 196 acttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaaggaatcagtg 255
Query: 292 ggcccgtgatgatcctgcatttgttgttattct 324
||| || ||||||||| |||||||| |||||
Sbjct: 256 ggctcggtatgatcctgnttttgttgtcattct 288
>gb|AACV01019041.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019041, whole
genome shotgun sequence
Length = 45623
Score = 137 bits (69), Expect = 2e-029
Identities = 90/97 (92%)
Strand = Plus / Minus
Query: 368 tatggagagagtgcctcacatgctgctctaacaatcacttcggttgtgtttctccatttc 427
|||||||||||| | |||||||||||| ||||||||||||| |||||| || ||||||||
Sbjct: 25507 tatggagagagtccttcacatgctgctttaacaatcacttcagttgtgcttgtccatttc 25448
Query: 428 ttgtttgctgggatagttttggccacactttgctggt 464
|||||||||||||||||| ||||||||||||||||||
Sbjct: 25447 ttgtttgctgggatagttctggccacactttgctggt 25411
Score = 125 bits (63), Expect = 6e-026
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 276 aaacaaagaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcc 335
|||||||||| |||||||| || ||||||||||| |||||||| ||||| ||||||||||
Sbjct: 25845 aaacaaagaatcagtgggctcgggatgatcctgcttttgttgtcattctaattcttttcc 25786
Query: 336 tcgtgtttgcaacatcagcttactgtgcagc 366
| |||||||||||||||||||||||||||||
Sbjct: 25785 ttgtgtttgcaacatcagcttactgtgcagc 25755
Score = 125 bits (63), Expect = 6e-026
Identities = 102/115 (88%)
Strand = Plus / Minus
Query: 596 tattttctgtcgcctctattggtcgcgcatggcttctttccagctttgttatctaatcta 655
|||||||| |||||||| |||||||| |||||||||||||| ||| | ||||| || ||
Sbjct: 23587 tattttctatcgcctctgttggtcgcacatggcttctttcctgctctattatcaaacctc 23528
Query: 656 ctcttcgtggtggcaatttcttattatcactacctgaactttctaggatatgatg 710
| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 23527 ttgtttgtggtggcaatttcttattatcactacctgaattttctaggatatgatg 23473
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 180 agtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtacttcac 239
|||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 27374 agtggcaacaaatggatatcgagtacacattttggcaaatggtccatctctgtacttcac 27315
Query: 240 caaaagtagt 249
||||||||||
Sbjct: 27314 caaaagtagt 27305
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 462 ggttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgcg 521
|||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 24077 ggtttcttacaaattcttacttgagggaggaacctaacagtcatgtggttgagcaacgtg 24018
Query: 522 tggagtgg 529
||||||||
Sbjct: 24017 tggagtgg 24010
Score = 71.9 bits (36), Expect = 8e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 528 ggctctatgcatttgacgttcattgtaactcgttctttcctgcgtttgtcatcctatatg 587
|||||||||||||||| |||||||| ||||| ||||| || || ||||||||||||||||
Sbjct: 23730 ggctctatgcatttgatgttcattgcaactcattcttcccagcctttgtcatcctatatg 23671
Score = 63.9 bits (32), Expect = 2e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 783 tgatactaatagggtttaatccgacaagatactttctaagcttgtacttcggttaa 838
||||||| |||||||| ||||| |||||||||||| | |||||||||||| |||||
Sbjct: 23243 tgatactcatagggttcaatccaacaagatactttttgagcttgtacttccgttaa 23188
Score = 52.0 bits (26), Expect = 7e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 250 ctatcagcacaccaaatatcacaagc 275
||||||||||||||||||||||||||
Sbjct: 26543 ctatcagcacaccaaatatcacaagc 26518
Score = 52.0 bits (26), Expect = 7e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 715 tccatttctagatagaacaacattcttcctgtatccgattggtctcgtcatcatcctgtc 774
||||||| | || ||||||||||| ||| |||| |||||||| || |||||||| || ||
Sbjct: 23387 tccatttttggacagaacaacatttttcttgtacccgattgggcttgtcatcattctctc 23328
Query: 775 tccact 780
||||||
Sbjct: 23327 tccact 23322
>ref|NT_107076.1| Oryza sativa (japonica cultivar-group)
Length = 2702857
Score = 137 bits (69), Expect = 2e-029
Identities = 90/97 (92%)
Strand = Plus / Minus
Query: 368 tatggagagagtgcctcacatgctgctctaacaatcacttcggttgtgtttctccatttc 427
|||||||||||| | |||||||||||| ||||||||||||| |||||| || ||||||||
Sbjct: 804225 tatggagagagtccttcacatgctgctttaacaatcacttcagttgtgcttgtccatttc 804166
Query: 428 ttgtttgctgggatagttttggccacactttgctggt 464
|||||||||||||||||| ||||||||||||||||||
Sbjct: 804165 ttgtttgctgggatagttctggccacactttgctggt 804129
Score = 125 bits (63), Expect = 6e-026
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 276 aaacaaagaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcc 335
|||||||||| |||||||| || ||||||||||| |||||||| ||||| ||||||||||
Sbjct: 804563 aaacaaagaatcagtgggctcgggatgatcctgcttttgttgtcattctaattcttttcc 804504
Query: 336 tcgtgtttgcaacatcagcttactgtgcagc 366
| |||||||||||||||||||||||||||||
Sbjct: 804503 ttgtgtttgcaacatcagcttactgtgcagc 804473
Score = 125 bits (63), Expect = 6e-026
Identities = 102/115 (88%)
Strand = Plus / Minus
Query: 596 tattttctgtcgcctctattggtcgcgcatggcttctttccagctttgttatctaatcta 655
|||||||| |||||||| |||||||| |||||||||||||| ||| | ||||| || ||
Sbjct: 802305 tattttctatcgcctctgttggtcgcacatggcttctttcctgctctattatcaaacctc 802246
Query: 656 ctcttcgtggtggcaatttcttattatcactacctgaactttctaggatatgatg 710
| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 802245 ttgtttgtggtggcaatttcttattatcactacctgaattttctaggatatgatg 802191
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 180 agtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtacttcac 239
|||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 806092 agtggcaacaaatggatatcgagtacacattttggcaaatggtccatctctgtacttcac 806033
Query: 240 caaaagtagt 249
||||||||||
Sbjct: 806032 caaaagtagt 806023
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 462 ggttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgcg 521
|||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 802795 ggtttcttacaaattcttacttgagggaggaacctaacagtcatgtggttgagcaacgtg 802736
Query: 522 tggagtgg 529
||||||||
Sbjct: 802735 tggagtgg 802728
Score = 71.9 bits (36), Expect = 8e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 528 ggctctatgcatttgacgttcattgtaactcgttctttcctgcgtttgtcatcctatatg 587
|||||||||||||||| |||||||| ||||| ||||| || || ||||||||||||||||
Sbjct: 802448 ggctctatgcatttgatgttcattgcaactcattcttcccagcctttgtcatcctatatg 802389
Score = 63.9 bits (32), Expect = 2e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 783 tgatactaatagggtttaatccgacaagatactttctaagcttgtacttcggttaa 838
||||||| |||||||| ||||| |||||||||||| | |||||||||||| |||||
Sbjct: 801958 tgatactcatagggttcaatccaacaagatactttttgagcttgtacttccgttaa 801903
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 710 gttcttccatttctagatagaacaacattcttcctgtatccgattggtctcgtcatcatc 769
|||||||||||| | || ||||||||||| ||| |||| |||||||| || ||||||||
Sbjct: 802107 gttcttccatttttggacagaacaacatttttcttgtacccgattgggcttgtcatcatt 802048
Query: 770 ctgtctccact 780
|| ||||||||
Sbjct: 802047 ctctctccact 802037
Score = 52.0 bits (26), Expect = 7e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 250 ctatcagcacaccaaatatcacaagc 275
||||||||||||||||||||||||||
Sbjct: 805261 ctatcagcacaccaaatatcacaagc 805236
>dbj|AP005787.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0501E09
Length = 150604
Score = 137 bits (69), Expect = 2e-029
Identities = 90/97 (92%)
Strand = Plus / Minus
Query: 368 tatggagagagtgcctcacatgctgctctaacaatcacttcggttgtgtttctccatttc 427
|||||||||||| | |||||||||||| ||||||||||||| |||||| || ||||||||
Sbjct: 89564 tatggagagagtccttcacatgctgctttaacaatcacttcagttgtgcttgtccatttc 89505
Query: 428 ttgtttgctgggatagttttggccacactttgctggt 464
|||||||||||||||||| ||||||||||||||||||
Sbjct: 89504 ttgtttgctgggatagttctggccacactttgctggt 89468
Score = 125 bits (63), Expect = 6e-026
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 276 aaacaaagaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcc 335
|||||||||| |||||||| || ||||||||||| |||||||| ||||| ||||||||||
Sbjct: 89902 aaacaaagaatcagtgggctcgggatgatcctgcttttgttgtcattctaattcttttcc 89843
Query: 336 tcgtgtttgcaacatcagcttactgtgcagc 366
| |||||||||||||||||||||||||||||
Sbjct: 89842 ttgtgtttgcaacatcagcttactgtgcagc 89812
Score = 125 bits (63), Expect = 6e-026
Identities = 102/115 (88%)
Strand = Plus / Minus
Query: 596 tattttctgtcgcctctattggtcgcgcatggcttctttccagctttgttatctaatcta 655
|||||||| |||||||| |||||||| |||||||||||||| ||| | ||||| || ||
Sbjct: 87644 tattttctatcgcctctgttggtcgcacatggcttctttcctgctctattatcaaacctc 87585
Query: 656 ctcttcgtggtggcaatttcttattatcactacctgaactttctaggatatgatg 710
| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 87584 ttgtttgtggtggcaatttcttattatcactacctgaattttctaggatatgatg 87530
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 180 agtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtacttcac 239
|||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 91431 agtggcaacaaatggatatcgagtacacattttggcaaatggtccatctctgtacttcac 91372
Query: 240 caaaagtagt 249
||||||||||
Sbjct: 91371 caaaagtagt 91362
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 462 ggttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgcg 521
|||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 88134 ggtttcttacaaattcttacttgagggaggaacctaacagtcatgtggttgagcaacgtg 88075
Query: 522 tggagtgg 529
||||||||
Sbjct: 88074 tggagtgg 88067
Score = 71.9 bits (36), Expect = 8e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 528 ggctctatgcatttgacgttcattgtaactcgttctttcctgcgtttgtcatcctatatg 587
|||||||||||||||| |||||||| ||||| ||||| || || ||||||||||||||||
Sbjct: 87787 ggctctatgcatttgatgttcattgcaactcattcttcccagcctttgtcatcctatatg 87728
Score = 63.9 bits (32), Expect = 2e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 783 tgatactaatagggtttaatccgacaagatactttctaagcttgtacttcggttaa 838
||||||| |||||||| ||||| |||||||||||| | |||||||||||| |||||
Sbjct: 87297 tgatactcatagggttcaatccaacaagatactttttgagcttgtacttccgttaa 87242
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 710 gttcttccatttctagatagaacaacattcttcctgtatccgattggtctcgtcatcatc 769
|||||||||||| | || ||||||||||| ||| |||| |||||||| || ||||||||
Sbjct: 87446 gttcttccatttttggacagaacaacatttttcttgtacccgattgggcttgtcatcatt 87387
Query: 770 ctgtctccact 780
|| ||||||||
Sbjct: 87386 ctctctccact 87376
Score = 52.0 bits (26), Expect = 7e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 250 ctatcagcacaccaaatatcacaagc 275
||||||||||||||||||||||||||
Sbjct: 90600 ctatcagcacaccaaatatcacaagc 90575
>gb|CH401231.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000068
genomic scaffold, whole genome shotgun sequence
Length = 1031722
Score = 137 bits (69), Expect = 2e-029
Identities = 90/97 (92%)
Strand = Plus / Minus
Query: 368 tatggagagagtgcctcacatgctgctctaacaatcacttcggttgtgtttctccatttc 427
|||||||||||| | |||||||||||| ||||||||||||| |||||| || ||||||||
Sbjct: 493762 tatggagagagtccttcacatgctgctttaacaatcacttcagttgtgcttgtccatttc 493703
Query: 428 ttgtttgctgggatagttttggccacactttgctggt 464
|||||||||||||||||| ||||||||||||||||||
Sbjct: 493702 ttgtttgctgggatagttctggccacactttgctggt 493666
Score = 125 bits (63), Expect = 6e-026
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 276 aaacaaagaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcc 335
|||||||||| |||||||| || ||||||||||| |||||||| ||||| ||||||||||
Sbjct: 494100 aaacaaagaatcagtgggctcgggatgatcctgcttttgttgtcattctaattcttttcc 494041
Query: 336 tcgtgtttgcaacatcagcttactgtgcagc 366
| |||||||||||||||||||||||||||||
Sbjct: 494040 ttgtgtttgcaacatcagcttactgtgcagc 494010
Score = 125 bits (63), Expect = 6e-026
Identities = 102/115 (88%)
Strand = Plus / Minus
Query: 596 tattttctgtcgcctctattggtcgcgcatggcttctttccagctttgttatctaatcta 655
|||||||| |||||||| |||||||| |||||||||||||| ||| | ||||| || ||
Sbjct: 491842 tattttctatcgcctctgttggtcgcacatggcttctttcctgctctattatcaaacctc 491783
Query: 656 ctcttcgtggtggcaatttcttattatcactacctgaactttctaggatatgatg 710
| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 491782 ttgtttgtggtggcaatttcttattatcactacctgaattttctaggatatgatg 491728
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 180 agtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtacttcac 239
|||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 495629 agtggcaacaaatggatatcgagtacacattttggcaaatggtccatctctgtacttcac 495570
Query: 240 caaaagtagt 249
||||||||||
Sbjct: 495569 caaaagtagt 495560
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 462 ggttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgcg 521
|||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 492332 ggtttcttacaaattcttacttgagggaggaacctaacagtcatgtggttgagcaacgtg 492273
Query: 522 tggagtgg 529
||||||||
Sbjct: 492272 tggagtgg 492265
Score = 71.9 bits (36), Expect = 8e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 528 ggctctatgcatttgacgttcattgtaactcgttctttcctgcgtttgtcatcctatatg 587
|||||||||||||||| |||||||| ||||| ||||| || || ||||||||||||||||
Sbjct: 491985 ggctctatgcatttgatgttcattgcaactcattcttcccagcctttgtcatcctatatg 491926
Score = 63.9 bits (32), Expect = 2e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 783 tgatactaatagggtttaatccgacaagatactttctaagcttgtacttcggttaa 838
||||||| |||||||| ||||| |||||||||||| | |||||||||||| |||||
Sbjct: 491498 tgatactcatagggttcaatccaacaagatactttttgagcttgtacttccgttaa 491443
Score = 52.0 bits (26), Expect = 7e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 250 ctatcagcacaccaaatatcacaagc 275
||||||||||||||||||||||||||
Sbjct: 494798 ctatcagcacaccaaatatcacaagc 494773
Score = 52.0 bits (26), Expect = 7e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 715 tccatttctagatagaacaacattcttcctgtatccgattggtctcgtcatcatcctgtc 774
||||||| | || ||||||||||| ||| |||| |||||||| || |||||||| || ||
Sbjct: 491642 tccatttttggacagaacaacatttttcttgtacccgattgggcttgtcatcattctctc 491583
Query: 775 tccact 780
||||||
Sbjct: 491582 tccact 491577
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 137 bits (69), Expect = 2e-029
Identities = 90/97 (92%)
Strand = Plus / Minus
Query: 368 tatggagagagtgcctcacatgctgctctaacaatcacttcggttgtgtttctccatttc 427
|||||||||||| | |||||||||||| ||||||||||||| |||||| || ||||||||
Sbjct: 493762 tatggagagagtccttcacatgctgctttaacaatcacttcagttgtgcttgtccatttc 493703
Query: 428 ttgtttgctgggatagttttggccacactttgctggt 464
|||||||||||||||||| ||||||||||||||||||
Sbjct: 493702 ttgtttgctgggatagttctggccacactttgctggt 493666
Score = 125 bits (63), Expect = 6e-026
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 276 aaacaaagaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcc 335
|||||||||| |||||||| || ||||||||||| |||||||| ||||| ||||||||||
Sbjct: 494100 aaacaaagaatcagtgggctcgggatgatcctgcttttgttgtcattctaattcttttcc 494041
Query: 336 tcgtgtttgcaacatcagcttactgtgcagc 366
| |||||||||||||||||||||||||||||
Sbjct: 494040 ttgtgtttgcaacatcagcttactgtgcagc 494010
Score = 125 bits (63), Expect = 6e-026
Identities = 102/115 (88%)
Strand = Plus / Minus
Query: 596 tattttctgtcgcctctattggtcgcgcatggcttctttccagctttgttatctaatcta 655
|||||||| |||||||| |||||||| |||||||||||||| ||| | ||||| || ||
Sbjct: 491842 tattttctatcgcctctgttggtcgcacatggcttctttcctgctctattatcaaacctc 491783
Query: 656 ctcttcgtggtggcaatttcttattatcactacctgaactttctaggatatgatg 710
| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 491782 ttgtttgtggtggcaatttcttattatcactacctgaattttctaggatatgatg 491728
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 180 agtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtacttcac 239
|||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 495629 agtggcaacaaatggatatcgagtacacattttggcaaatggtccatctctgtacttcac 495570
Query: 240 caaaagtagt 249
||||||||||
Sbjct: 495569 caaaagtagt 495560
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 462 ggttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgcg 521
|||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 492332 ggtttcttacaaattcttacttgagggaggaacctaacagtcatgtggttgagcaacgtg 492273
Query: 522 tggagtgg 529
||||||||
Sbjct: 492272 tggagtgg 492265
Score = 71.9 bits (36), Expect = 8e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 528 ggctctatgcatttgacgttcattgtaactcgttctttcctgcgtttgtcatcctatatg 587
|||||||||||||||| |||||||| ||||| ||||| || || ||||||||||||||||
Sbjct: 491985 ggctctatgcatttgatgttcattgcaactcattcttcccagcctttgtcatcctatatg 491926
Score = 63.9 bits (32), Expect = 2e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 783 tgatactaatagggtttaatccgacaagatactttctaagcttgtacttcggttaa 838
||||||| |||||||| ||||| |||||||||||| | |||||||||||| |||||
Sbjct: 491498 tgatactcatagggttcaatccaacaagatactttttgagcttgtacttccgttaa 491443
Score = 52.0 bits (26), Expect = 7e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 250 ctatcagcacaccaaatatcacaagc 275
||||||||||||||||||||||||||
Sbjct: 494798 ctatcagcacaccaaatatcacaagc 494773
Score = 52.0 bits (26), Expect = 7e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 715 tccatttctagatagaacaacattcttcctgtatccgattggtctcgtcatcatcctgtc 774
||||||| | || ||||||||||| ||| |||| |||||||| || |||||||| || ||
Sbjct: 491642 tccatttttggacagaacaacatttttcttgtacccgattgggcttgtcatcattctctc 491583
Query: 775 tccact 780
||||||
Sbjct: 491582 tccact 491577
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
complete sequence
Length = 22696651
Score = 137 bits (69), Expect = 2e-029
Identities = 90/97 (92%)
Strand = Plus / Minus
Query: 368 tatggagagagtgcctcacatgctgctctaacaatcacttcggttgtgtttctccatttc 427
|||||||||||| | |||||||||||| ||||||||||||| |||||| || ||||||||
Sbjct: 804225 tatggagagagtccttcacatgctgctttaacaatcacttcagttgtgcttgtccatttc 804166
Query: 428 ttgtttgctgggatagttttggccacactttgctggt 464
|||||||||||||||||| ||||||||||||||||||
Sbjct: 804165 ttgtttgctgggatagttctggccacactttgctggt 804129
Score = 125 bits (63), Expect = 6e-026
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 276 aaacaaagaaccagtgggcccgtgatgatcctgcatttgttgttattctgattcttttcc 335
|||||||||| |||||||| || ||||||||||| |||||||| ||||| ||||||||||
Sbjct: 804563 aaacaaagaatcagtgggctcgggatgatcctgcttttgttgtcattctaattcttttcc 804504
Query: 336 tcgtgtttgcaacatcagcttactgtgcagc 366
| |||||||||||||||||||||||||||||
Sbjct: 804503 ttgtgtttgcaacatcagcttactgtgcagc 804473
Score = 125 bits (63), Expect = 6e-026
Identities = 102/115 (88%)
Strand = Plus / Minus
Query: 596 tattttctgtcgcctctattggtcgcgcatggcttctttccagctttgttatctaatcta 655
|||||||| |||||||| |||||||| |||||||||||||| ||| | ||||| || ||
Sbjct: 802305 tattttctatcgcctctgttggtcgcacatggcttctttcctgctctattatcaaacctc 802246
Query: 656 ctcttcgtggtggcaatttcttattatcactacctgaactttctaggatatgatg 710
| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 802245 ttgtttgtggtggcaatttcttattatcactacctgaattttctaggatatgatg 802191
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 180 agtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtacttcac 239
|||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 806092 agtggcaacaaatggatatcgagtacacattttggcaaatggtccatctctgtacttcac 806033
Query: 240 caaaagtagt 249
||||||||||
Sbjct: 806032 caaaagtagt 806023
Score = 95.6 bits (48), Expect = 5e-017
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 462 ggttccttacaaattcttacttgagagaggaacctaacagccatgttgttgagcaacgcg 521
|||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 802795 ggtttcttacaaattcttacttgagggaggaacctaacagtcatgtggttgagcaacgtg 802736
Query: 522 tggagtgg 529
||||||||
Sbjct: 802735 tggagtgg 802728
Score = 71.9 bits (36), Expect = 8e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 528 ggctctatgcatttgacgttcattgtaactcgttctttcctgcgtttgtcatcctatatg 587
|||||||||||||||| |||||||| ||||| ||||| || || ||||||||||||||||
Sbjct: 802448 ggctctatgcatttgatgttcattgcaactcattcttcccagcctttgtcatcctatatg 802389
Score = 63.9 bits (32), Expect = 2e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 783 tgatactaatagggtttaatccgacaagatactttctaagcttgtacttcggttaa 838
||||||| |||||||| ||||| |||||||||||| | |||||||||||| |||||
Sbjct: 801958 tgatactcatagggttcaatccaacaagatactttttgagcttgtacttccgttaa 801903
Score = 61.9 bits (31), Expect = 7e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 710 gttcttccatttctagatagaacaacattcttcctgtatccgattggtctcgtcatcatc 769
|||||||||||| | || ||||||||||| ||| |||| |||||||| || ||||||||
Sbjct: 802107 gttcttccatttttggacagaacaacatttttcttgtacccgattgggcttgtcatcatt 802048
Query: 770 ctgtctccact 780
|| ||||||||
Sbjct: 802047 ctctctccact 802037
Score = 52.0 bits (26), Expect = 7e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 250 ctatcagcacaccaaatatcacaagc 275
||||||||||||||||||||||||||
Sbjct: 805261 ctatcagcacaccaaatatcacaagc 805236
>gb|AU172322.1|AU172322 AU172322 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C61990, mRNA sequence
Length = 453
Score = 83.8 bits (42), Expect = 2e-013
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 761 gtcatcatcctgtctccacttatgatactaatagggtttaatccgacaagatactttcta 820
|||||||| || |||||||| |||||||| |||||||| ||||| |||||||||||| |
Sbjct: 10 gtcatcattctctctccactgatgatactcatagggttcaatccaacaagatactttttg 69
Query: 821 agcttgtacttcggttaa 838
|||||||||||| |||||
Sbjct: 70 agcttgtacttccgttaa 87
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,688,259
Number of Sequences: 438736
Number of extensions: 1688259
Number of successful extensions: 9819
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9696
Number of HSP's gapped (non-prelim): 122
length of query: 1205
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1184
effective length of database: 2,791,206,460
effective search space: 3304788448640
effective search space used: 3304788448640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)