BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950225.2.1
(3330 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_467688.1| Oryza sativa (japonica cultivar-group), mRNA 745 0.0
dbj|AP005112.3| Oryza sativa (japonica cultivar-group) geno... 394 e-106
gb|AACV01005369.1| Oryza sativa (japonica cultivar-group) c... 394 e-106
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 394 e-106
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 394 e-106
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 394 e-106
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 394 e-106
gb|CV152516.1|CV152516 LS71-S.SEQ Cold stressed rice cDNA l... 313 3e-082
gb|AACV01005368.1| Oryza sativa (japonica cultivar-group) c... 226 6e-056
ref|XM_469566.1| Oryza sativa (japonica cultivar-group), mRNA 121 3e-024
gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17... 113 6e-022
gb|AACV01007799.1| Oryza sativa (japonica cultivar-group) c... 113 6e-022
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 113 6e-022
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 113 6e-022
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 113 6e-022
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 113 6e-022
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 113 6e-022
ref|XM_478835.1| Oryza sativa (japonica cultivar-group), mRNA 90 9e-015
dbj|AP004271.1| Oryza sativa (japonica cultivar-group) chro... 86 1e-013
gb|AACV01016637.1| Oryza sativa (japonica cultivar-group) c... 86 1e-013
dbj|AP003804.3| Oryza sativa (japonica cultivar-group) geno... 86 1e-013
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 86 1e-013
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 86 1e-013
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 86 1e-013
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 86 1e-013
gb|D47151.1|D47151 RICS12303A Rice green shoot Oryza sativa... 70 9e-009
gb|CB676673.1|CB676673 OSJNEe13A19.f OSJNEe Oryza sativa (j... 70 9e-009
ref|NM_196042.1| Oryza sativa (japonica cultivar-group) put... 70 9e-009
gb|D47801.1|D47801 RICS13496A Rice green shoot Oryza sativa... 62 2e-006
dbj|AK121000.1| Oryza sativa (japonica cultivar-group) cDNA... 62 2e-006
gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L0... 62 2e-006
gb|AACV01021333.1| Oryza sativa (japonica cultivar-group) c... 62 2e-006
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 62 2e-006
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 62 2e-006
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 62 2e-006
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 62 2e-006
gb|AC083945.3| Oryza sativa (japonica cultivar-group) chrom... 62 2e-006
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 62 2e-006
gb|AQ160958.1|AQ160958 nbxb0006A20r CUGI Rice BAC Library O... 56 1e-004
gb|AQ259758.1|AQ259758 nbxb0023D16r CUGI Rice BAC Library O... 56 1e-004
dbj|AK067580.1| Oryza sativa (japonica cultivar-group) cDNA... 52 0.002
dbj|AK121135.1| Oryza sativa (japonica cultivar-group) cDNA... 52 0.002
gb|AACV01004584.1| Oryza sativa (japonica cultivar-group) c... 52 0.002
ref|XM_463649.1| Oryza sativa (japonica cultivar-group), p... 52 0.002
gb|AACV01002960.1| Oryza sativa (japonica cultivar-group) c... 48 0.031
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 48 0.031
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 48 0.031
dbj|AP004672.3| Oryza sativa (japonica cultivar-group) geno... 48 0.031
dbj|AP006167.3| Oryza sativa (japonica cultivar-group) geno... 48 0.031
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.031
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.031
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 48 0.031
gb|AU062638.1|AU062638 AU062638 Rice callus Oryza sativa (j... 46 0.12
gb|CB637508.1|CB637508 OSJNEa04E11.f OSJNEa Oryza sativa (j... 46 0.12
gb|AACV01010055.1| Oryza sativa (japonica cultivar-group) c... 46 0.12
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 46 0.12
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.12
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.12
emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromoso... 46 0.12
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 46 0.12
gb|AU091371.1|AU091371 AU091371 Rice panicle shorter than 3... 44 0.49
gb|CF321455.1|CF321455 HD--12-L12.b1 OsHDAC1-overexpressing... 44 0.49
gb|BP184628.1|BP184628 BP184628 pNS rice panicle cDNA, flow... 44 0.49
gb|BP185005.1|BP185005 BP185005 pNS rice callus cDNA Oryza ... 44 0.49
dbj|AK059936.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.49
dbj|AK060709.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.49
dbj|AK070545.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.49
dbj|AK104192.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.49
dbj|AK121586.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.49
gb|AC090713.6| Oryza sativa chromosome 3 BAC OSJNBa0002J24 ... 44 0.49
dbj|AP003857.3| Oryza sativa (japonica cultivar-group) geno... 44 0.49
dbj|AP003888.4| Oryza sativa (japonica cultivar-group) geno... 44 0.49
dbj|AP003985.4| Oryza sativa (japonica cultivar-group) geno... 44 0.49
ref|NT_107116.1| Oryza sativa (japonica cultivar-group) 44 0.49
gb|AACV01002186.1| Oryza sativa (japonica cultivar-group) c... 44 0.49
gb|AACV01002187.1| Oryza sativa (japonica cultivar-group) c... 44 0.49
gb|AACV01007974.1| Oryza sativa (japonica cultivar-group) c... 44 0.49
gb|AACV01016682.1| Oryza sativa (japonica cultivar-group) c... 44 0.49
gb|AACV01018887.1| Oryza sativa (japonica cultivar-group) c... 44 0.49
gb|AACV01022768.1| Oryza sativa (japonica cultivar-group) c... 44 0.49
ref|NM_191647.1| Oryza sativa (japonica cultivar-group), p... 44 0.49
ref|XM_469885.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.49
ref|XM_483433.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.49
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 44 0.49
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 44 0.49
dbj|AP005149.4| Oryza sativa (japonica cultivar-group) geno... 44 0.49
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.49
dbj|AP003023.2| Oryza sativa (japonica cultivar-group) geno... 44 0.49
dbj|AP003381.3| Oryza sativa (japonica cultivar-group) geno... 44 0.49
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.49
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.49
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.49
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.49
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.49
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.49
gb|AC138002.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.49
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.49
>ref|XM_467688.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2955
Score = 745 bits (376), Expect = 0.0
Identities = 613/692 (88%)
Strand = Plus / Minus
Query: 2467 gaagcatttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctc 2526
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||
Sbjct: 776 gaagcatttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactc 717
Query: 2527 aacaaattctccacaagtgactccacatcaaaggctccaccgagatatccgatagttgct 2586
| |||||| ||||| ||||||||||||||||| |||||||| |||||||| |||||||
Sbjct: 716 agcaaattttccacgagtgactccacatcaaaagctccaccaagatatccagcagttgct 657
Query: 2587 tccacacgttgctcaactgatgcatcagcagggagatcagggcggtacacagcaaacgtg 2646
|||||||| | |||||||||||||||||||| ||| ||||||| ||||||||||| |||
Sbjct: 656 tccacacgctcctcaactgatgcatcagcagctagaccagggcgatacacagcaaaagtg 597
Query: 2647 agaactactcccaagtggtttgatccaagcaaccgaaatgggtttgttaacacagctttg 2706
|||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct: 596 agaactacccccaagtggtttgacccaagcaacctgaatgggtttgtcaacacagctttg 537
Query: 2707 ccagtagtcctggcccggaaaatgttttctcggtcctcctccccagacatcatgtcaatg 2766
|| |||| ||| || || || |||||||| |||||||||||||||||||||||||| ||
Sbjct: 536 ccggtagcccttgcacgtaagatgttttcccggtcctcctccccagacatcatgtcgata 477
Query: 2767 cgtgcaaggtaggaaaccgtatcctgagagaaaatcactggggcgtattcaacctgcgga 2826
|||||||||||||||||||||||||| || |||||||||||||| || ||| |||| |||
Sbjct: 476 cgtgcaaggtaggaaaccgtatcctgtgaaaaaatcactggggcatactcatcctgtgga 417
Query: 2827 ggtgcaggctcccgctgcatcgtattcataacccatccctgctggctttcaaacatttcc 2886
|| |||| || |||| |||||| ||||||| ||||||||||||| | ||||||||||||
Sbjct: 416 ggcgcagcctgtcgcttcatcgtcttcataatccatccctgctggttctcaaacatttcc 357
Query: 2887 ctctcatgatggaatacacgctgtgcgaatgccaccccattgagcagcggtcgctcaaat 2946
||||| |||||||| | |||||| || ||||||| ||||| ||||| || ||||||||
Sbjct: 356 ctctcgtgatggaagatacgctgcgcatatgccactccattcagcagtgggcgctcaaac 297
Query: 2947 gatgtccttgccgtgtattttgcaaaggtgtcctggtcgatggctggaggggacttctcg 3006
||||||||||||||||| |||||||| || |||||||||||||| | ||| ||||||||
Sbjct: 296 gatgtccttgccgtgtactttgcaaatgtatcctggtcgatggcggacgggaacttctcg 237
Query: 3007 aagttgaaggtggagatgagaatggcgatggcgtggacgtggttgacggtgaccccgaac 3066
|| | ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||
Sbjct: 236 aaatggaaggtggagatgaggatggcgagggcgtggacgtggttgacggtgacgccgaac 177
Query: 3067 tgctcctgcagcatcctggccctctcctcgcacatgctgacgaggcgctcctcggcgcgg 3126
||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 176 tgctcctgcagcatcctcgcccgctcctcgcacatgctgacgagccgctcctcggcgcgg 117
Query: 3127 tccatgctgtcccggcgcagggtccagtgcat 3158
|||||| | ||||| |||||| |||||||||
Sbjct: 116 tccatggtctcccgccgcaggtgccagtgcat 85
Score = 700 bits (353), Expect = 0.0
Identities = 830/989 (83%)
Strand = Plus / Minus
Query: 1129 ttcacaacttgaagaagtattcccaacctcttgaggtgatatcttgtaacagcactacgt 1188
|||||||||| || || |||||||||||| || |||||||||| ||| ||||| | ||||
Sbjct: 2156 ttcacaactttaacaactattcccaacctgttaaggtgatatcgtgtgacagctccacgt 2097
Query: 1189 acaggtctcccatctaccaagatggccttcattcccttaaaagcagttggtagtgcctct 1248
||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||
Sbjct: 2096 acaggtctcccatctactaaaatagccttcattcccttaaaggcagttggtagtgcctca 2037
Query: 1249 gtcaagctcctacttgaatcacccgaaatatctttgtatgagtgcttcagtgtggctgag 1308
| |||||||| ||||||||| ||| |||||||| ||||| |||| || ||||||
Sbjct: 2036 gataagctcctctttgaatcacttgaagtatctttgcatgagcgcttgaggacagctgag 1977
Query: 1309 aaagtgaacgtgcttccaacagaaggatggctggtgaaacttatctgcccacccataagt 1368
|| || || || || |||||| | ||| |||| ||||||||||| || || |||||||||
Sbjct: 1976 aatgtaaatgtactcccaacaaatggacggctagtgaaacttatttgaccgcccataagt 1917
Query: 1369 tcagctagacacttgctgatgcttaaaccgatgccagtaccaccataattccttgaagtt 1428
||||||| ||| ||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 1916 tcagctaaacatttgctgatgcttaaaccaatgccagttccaccatagttccttgaagtt 1857
Query: 1429 gaactgtcagcctgcataaacggtgtaaaaacacgatcttgtgcttgcagtggtatcccg 1488
||||| ||||||||||| || || |||||||||||||||||||| || | ||| |||||
Sbjct: 1856 gaactatcagcctgcatgaaaggcgtaaaaacacgatcttgtgcatgtaatgggatccca 1797
Query: 1489 acacctgtgtcctcaatacttattgctagtgtgacacgatctgaatcactttgattagag 1548
|||||||| |||||||||||||| | || |||| || ||||| |||||| |||
Sbjct: 1796 acacctgtatcctcaatacttatcatcaaggtcacacagtcacaatcattttgataagat 1737
Query: 1549 ttttcgccctcaagatcatccaaaagcgactccttatcagagaggagcagtttaaaatat 1608
| |||| |||||| ||||||| | | | ||| |||||||| || ||||| ||||||||
Sbjct: 1736 ctgtcgcactcaagctcatccatatggggctctttatcagatagcagcagcttaaaataa 1677
Query: 1609 tgccaactatttcgtctgtctgctgcttcaaacccactcaaagtattgaaggcaccatta 1668
| ||| |||| || ||||| |||| ||| |||||||||||||||||||| ||||||
Sbjct: 1676 tcccagttattgcgctcatctgcggcttgaaaaccactcaaagtattgaaggcgccatta 1617
Query: 1669 gctgttgactcaactctaccacctttgccattcatggctccatgtaggacctgattggct 1728
||||| | ||||||| | || |||| |||||||||| ||||| ||||| ||||| |||
Sbjct: 1616 gctgtagtctcaactttgccgtctttcccattcatggttccattaaggacttgattagct 1557
Query: 1729 tccatatttgagttttcagccaaacacacccgcacaaatacatgacctcgttctgtgaat 1788
|||| |||||||| ||||||| || || |||||||||||||| || ||||||||||||
Sbjct: 1556 tccacttttgagttctcagccaggcagactcgcacaaatacatggccccgttctgtgaat 1497
Query: 1789 ttgactgcattcccgaccaaatttgtcagtatctgtcgaaacctccaaggatctccaata 1848
||||||||||| || ||||||||||||||||| |||||| | ||||| ||||||||||||
Sbjct: 1496 ttgactgcatttcccaccaaatttgtcagtatttgtcgatatctccatggatctccaata 1437
Query: 1849 acaaccttcggaacattgtcacatacaaatacggcaagctcaatgcacttctcccgtgac 1908
||||| || ||||||| ||||||||||| || |||||||||||||||||||| | |||
Sbjct: 1436 acaacttttggaacatcatcacatacaaacactgcaagctcaatgcacttctctcttgat 1377
Query: 1909 tttgaagaaaacaaggaaacaacatcatccatgagagaacgcaggtcaaaaggcaccgct 1968
||||||||||| ||||| | ||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 1376 tttgaagaaaataaggagatcacatcatccatgagagaccgcaggtcaaatggcactgcc 1317
Query: 1969 tcaagctctaactttccagcctcaatctttgctcgatcaaggacatcatttatcagtgta 2028
|||||||| || || || || |||||||| || |||||||| |||||||||||||||||
Sbjct: 1316 tcaagctccaatttccctgcttcaatcttagcccgatcaagtacatcatttatcagtgtt 1257
Query: 2029 atcaatgctctgccacacatttgagcagtttgagcataatccttctgtgtcatagttaga 2088
|||||||||||||||||||| || || || ||||||||||||||||| |||||| | |||
Sbjct: 1256 atcaatgctctgccacacatctgggctgtctgagcataatccttctgagtcatactcaga 1197
Query: 2089 tctgttcctaaaagcatatccagcattcc 2117
||||| || || ||||| || ||||||||
Sbjct: 1196 tctgtccccaagagcatgtcgagcattcc 1168
Score = 345 bits (174), Expect = 1e-091
Identities = 360/422 (85%)
Strand = Plus / Minus
Query: 534 cttcctttcctcgttcgctttcaactccatttgccttatttgtccggttgcctcaaaccc 593
||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||||
Sbjct: 2754 cttcctttcctcgtttgcttttacctccatttgccttatttgtctagttgcctcaaaccc 2695
Query: 594 gtccatctctggcatctgaacatccataaaacatgcatcgaagcgatgcgggggttgaag 653
||||||||||||||||||||||||||||| |||||||| |||| || || |||||||
Sbjct: 2694 atccatctctggcatctgaacatccataaagcatgcatcaaagcagtgtggttgttgaag 2635
Query: 654 tagactgatagcatccttgccgctttcaacacagctaacattagcaccatatttcttgag 713
|| || ||||| ||||||||||||||||| ||| || |||||||||||||||||
Sbjct: 2634 taaggagactgcatctttgccgctttcaacacaatgaactttggcaccatatttcttgag 2575
Query: 714 tgcagccgcagcaactctgaggttgactttattatcgtctacgaccaatatattcttccc 773
||||| |||||||| ||||| |||||||||||||| ||||| | |||||||||||||||
Sbjct: 2574 cgcagctgcagcaaccctgagattgactttattatcatctacaatcaatatattcttccc 2515
Query: 774 aaccagcaagcttcgaagaaacgacggccggttttgattatcttttctttcggctatctc 833
|| ||||||||| || ||||| || |||| |||||||| ||||| ||||| | ||| |
Sbjct: 2514 aatcagcaagctgcggagaaatgagggcctattttgattgtctttcctttcaggcatcac 2455
Query: 834 tactttgagcagttgttgaatagatgaagcgattgtgcttgcccttataggcttacacat 893
|||||| |||| ||||||| | ||||| |||||||||||||||||||| ||| ||||
Sbjct: 2454 tacttttagcaactgttgaaggcaagaagcaattgtgcttgcccttataggtttatacat 2395
Query: 894 cacaatatcaaatatggatccatatttgtccttgtcggcttcagaggtgaccaaaagaac 953
||||||||||||| |||||||||| |||||||||| ||||| || || |||||||||||
Sbjct: 2394 cacaatatcaaatgcggatccatatctgtccttgtcagcttctgatgttaccaaaagaac 2335
Query: 954 ta 955
||
Sbjct: 2334 ta 2333
Score = 196 bits (99), Expect = 5e-047
Identities = 207/243 (85%)
Strand = Plus / Minus
Query: 2117 caaggacgccattcataggtgttctgatctcatgtgacgcagttgccaggaactgagatt 2176
|||||||||||||||||||||||||||||||||| || |||||||||| ||||| || |
Sbjct: 1132 caaggacgccattcataggtgttctgatctcatgggatacagttgccagaaactgggact 1073
Query: 2177 ttgcaacatcagcagcttctgcctgcgtttttagctcttccatctttctgcaatcttcag 2236
| ||||||||||||||||| || || ||||| ||||||||||||||||| ||||| || |
Sbjct: 1072 tagcaacatcagcagcttccgcttgagttttgagctcttccatctttctacaatcctctg 1013
Query: 2237 taactttgtcatatcgagaatatgcagcagcaatgctatacccaagaagcatccatatga 2296
|||||| ||||| ||||| |||| ||| ||| ||||||| | |||||||||||| |
Sbjct: 1012 aaactttatcatagcgagaccatgcggcacaaattatataccccacaagcatccatataa 953
Query: 2297 caaatgtgcccaaaggattggttatggcagaccacggcataggaagcttttgtctatacc 2356
|||| || ||||||||||| || || |||||||| |||| |||| ||||||| |||||||
Sbjct: 952 caaaagttcccaaaggattagtgatagcagaccatggcagaggaggcttttgcctatacc 893
Query: 2357 tgc 2359
|||
Sbjct: 892 tgc 890
Score = 143 bits (72), Expect = 7e-031
Identities = 132/152 (86%)
Strand = Plus / Minus
Query: 347 tcgttcccactaccaatctggagactgcttggtatagctgctcctcgtcgaagggtttag 406
|||||||||| || ||||||||||| |||||||||| ||||||||||||||| ||||| |
Sbjct: 2938 tcgttcccaccactaatctggagacagcttggtataactgctcctcgtcgaaaggtttgg 2879
Query: 407 atacgtatccatccattcccgattttatgcactcttcgtaagttgcctggataacatcgg 466
| || || |||||||||||||||||||| || ||||| || || ||||| || ||||| |
Sbjct: 2878 acacataaccatccattcccgattttatacattcttcatatgtcgcctgaatgacatccg 2819
Query: 467 ctgtcattgccagaacaggcagatggtactcg 498
| ||||||||||||||||||| |||| |||||
Sbjct: 2818 cggtcattgccagaacaggcaaatgggactcg 2787
Score = 61.9 bits (31), Expect = 2e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 1017 atctgtctcaggcctccagaagtcactctcaataaaaag 1055
|||||||||||||||||||| ||||||||| ||||||||
Sbjct: 2268 atctgtctcaggcctccagatgtcactctctataaaaag 2230
>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0684F11
Length = 147731
Score = 394 bits (199), Expect = e-106
Identities = 544/659 (82%)
Strand = Plus / Minus
Query: 1129 ttcacaacttgaagaagtattcccaacctcttgaggtgatatcttgtaacagcactacgt 1188
|||||||||| || || |||||||||||| || |||||||||| ||| ||||| | ||||
Sbjct: 29812 ttcacaactttaacaactattcccaacctgttaaggtgatatcgtgtgacagctccacgt 29753
Query: 1189 acaggtctcccatctaccaagatggccttcattcccttaaaagcagttggtagtgcctct 1248
||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||
Sbjct: 29752 acaggtctcccatctactaaaatagccttcattcccttaaaggcagttggtagtgcctca 29693
Query: 1249 gtcaagctcctacttgaatcacccgaaatatctttgtatgagtgcttcagtgtggctgag 1308
| |||||||| ||||||||| ||| |||||||| ||||| |||| || ||||||
Sbjct: 29692 gataagctcctctttgaatcacttgaagtatctttgcatgagcgcttgaggacagctgag 29633
Query: 1309 aaagtgaacgtgcttccaacagaaggatggctggtgaaacttatctgcccacccataagt 1368
|| || || || || |||||| | ||| |||| ||||||||||| || || |||||||||
Sbjct: 29632 aatgtaaatgtactcccaacaaatggacggctagtgaaacttatttgaccgcccataagt 29573
Query: 1369 tcagctagacacttgctgatgcttaaaccgatgccagtaccaccataattccttgaagtt 1428
||||||| ||| ||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 29572 tcagctaaacatttgctgatgcttaaaccaatgccagttccaccatagttccttgaagtt 29513
Query: 1429 gaactgtcagcctgcataaacggtgtaaaaacacgatcttgtgcttgcagtggtatcccg 1488
||||| ||||||||||| || || |||||||||||||||||||| || | ||| |||||
Sbjct: 29512 gaactatcagcctgcatgaaaggcgtaaaaacacgatcttgtgcatgtaatgggatccca 29453
Query: 1489 acacctgtgtcctcaatacttattgctagtgtgacacgatctgaatcactttgattagag 1548
|||||||| |||||||||||||| | || |||| || ||||| |||||| |||
Sbjct: 29452 acacctgtatcctcaatacttatcatcaaggtcacacagtcacaatcattttgataagat 29393
Query: 1549 ttttcgccctcaagatcatccaaaagcgactccttatcagagaggagcagtttaaaatat 1608
| |||| |||||| ||||||| | | | ||| |||||||| || ||||| ||||||||
Sbjct: 29392 ctgtcgcactcaagctcatccatatggggctctttatcagatagcagcagcttaaaataa 29333
Query: 1609 tgccaactatttcgtctgtctgctgcttcaaacccactcaaagtattgaaggcaccatta 1668
| ||| |||| || ||||| |||| ||| |||||||||||||||||||| ||||||
Sbjct: 29332 tcccagttattgcgctcatctgcggcttgaaaaccactcaaagtattgaaggcgccatta 29273
Query: 1669 gctgttgactcaactctaccacctttgccattcatggctccatgtaggacctgattggct 1728
||||| | ||||||| | || |||| |||||||||| ||||| ||||| ||||| |||
Sbjct: 29272 gctgtagtctcaactttgccgtctttcccattcatggttccattaaggacttgattagct 29213
Query: 1729 tccatatttgagttttcagccaaacacacccgcacaaatacatgacctcgttctgtgaa 1787
|||| |||||||| ||||||| || || |||||||||||||| || |||||||||||
Sbjct: 29212 tccacttttgagttctcagccaggcagactcgcacaaatacatggccccgttctgtgaa 29154
Score = 274 bits (138), Expect = 3e-070
Identities = 309/366 (84%)
Strand = Plus / Minus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatcgaagcgatgcgggggtt 649
|||| ||||||||||||||||||||||||||||| |||||||| |||| || || |||
Sbjct: 30677 acccatccatctctggcatctgaacatccataaagcatgcatcaaagcagtgtggttgtt 30618
Query: 650 gaagtagactgatagcatccttgccgctttcaacacagctaacattagcaccatatttct 709
|||||| || ||||| ||||||||||||||||| ||| || |||||||||||||
Sbjct: 30617 gaagtaaggagactgcatctttgccgctttcaacacaatgaactttggcaccatatttct 30558
Query: 710 tgagtgcagccgcagcaactctgaggttgactttattatcgtctacgaccaatatattct 769
|||| ||||| |||||||| ||||| |||||||||||||| ||||| | |||||||||||
Sbjct: 30557 tgagcgcagctgcagcaaccctgagattgactttattatcatctacaatcaatatattct 30498
Query: 770 tcccaaccagcaagcttcgaagaaacgacggccggttttgattatcttttctttcggcta 829
|||||| ||||||||| || ||||| || |||| |||||||| ||||| ||||| | |
Sbjct: 30497 tcccaatcagcaagctgcggagaaatgagggcctattttgattgtctttcctttcaggca 30438
Query: 830 tctctactttgagcagttgttgaatagatgaagcgattgtgcttgcccttataggcttac 889
|| ||||||| |||| ||||||| | ||||| |||||||||||||||||||| |||
Sbjct: 30437 tcactacttttagcaactgttgaaggcaagaagcaattgtgcttgcccttataggtttat 30378
Query: 890 acatcacaatatcaaatatggatccatatttgtccttgtcggcttcagaggtgaccaaaa 949
||||||||||||||||| |||||||||| |||||||||| ||||| || || |||||||
Sbjct: 30377 acatcacaatatcaaatgcggatccatatctgtccttgtcagcttctgatgttaccaaaa 30318
Query: 950 gaacta 955
||||||
Sbjct: 30317 gaacta 30312
Score = 226 bits (114), Expect = 6e-056
Identities = 207/238 (86%)
Strand = Plus / Minus
Query: 2744 cctccccagacatcatgtcaatgcgtgcaaggtaggaaaccgtatcctgagagaaaatca 2803
||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct: 26878 cctccccagacatcatgtcgatacgtgcaaggtaggaaaccgtatcctgtgaaaaaatca 26819
Query: 2804 ctggggcgtattcaacctgcggaggtgcaggctcccgctgcatcgtattcataacccatc 2863
||||||| || ||| |||| ||||| |||| || |||| |||||| ||||||| |||||
Sbjct: 26818 ctggggcatactcatcctgtggaggcgcagcctgtcgcttcatcgtcttcataatccatc 26759
Query: 2864 cctgctggctttcaaacatttccctctcatgatggaatacacgctgtgcgaatgccaccc 2923
|||||||| | ||||||||||||||||| |||||||| | |||||| || ||||||| |
Sbjct: 26758 cctgctggttctcaaacatttccctctcgtgatggaagatacgctgcgcatatgccactc 26699
Query: 2924 cattgagcagcggtcgctcaaatgatgtccttgccgtgtattttgcaaaggtgtcctg 2981
|||| ||||| || |||||||| ||||||||||||||||| |||||||| || |||||
Sbjct: 26698 cattcagcagtgggcgctcaaacgatgtccttgccgtgtactttgcaaatgtatcctg 26641
Score = 224 bits (113), Expect = 2e-055
Identities = 164/181 (90%)
Strand = Plus / Minus
Query: 2978 cctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatgg 3037
||||||||||||| | ||| |||||||||| | ||||||||||||||| ||||||| ||
Sbjct: 25879 cctggtcgatggcggacgggaacttctcgaaatggaaggtggagatgaggatggcgaggg 25820
Query: 3038 cgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgc 3097
|||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||
Sbjct: 25819 cgtggacgtggttgacggtgacgccgaactgctcctgcagcatcctcgcccgctcctcgc 25760
Query: 3098 acatgctgacgaggcgctcctcggcgcggtccatgctgtcccggcgcagggtccagtgca 3157
||||||||||||| ||||||||||||||||||||| | ||||| |||||| ||||||||
Sbjct: 25759 acatgctgacgagccgctcctcggcgcggtccatggtctcccgccgcaggtgccagtgca 25700
Query: 3158 t 3158
|
Sbjct: 25699 t 25699
Score = 204 bits (103), Expect = 2e-049
Identities = 199/231 (86%)
Strand = Plus / Minus
Query: 1887 ctcaatgcacttctcccgtgactttgaagaaaacaaggaaacaacatcatccatgagaga 1946
||||||||||||||| | ||| ||||||||||| ||||| | |||||||||||||||||
Sbjct: 28685 ctcaatgcacttctctcttgattttgaagaaaataaggagatcacatcatccatgagaga 28626
Query: 1947 acgcaggtcaaaaggcaccgcttcaagctctaactttccagcctcaatctttgctcgatc 2006
||||||||||| ||||| || |||||||| || || || || |||||||| || |||||
Sbjct: 28625 ccgcaggtcaaatggcactgcctcaagctccaatttccctgcttcaatcttagcccgatc 28566
Query: 2007 aaggacatcatttatcagtgtaatcaatgctctgccacacatttgagcagtttgagcata 2066
||| ||||||||||||||||| |||||||||||||||||||| || || || ||||||||
Sbjct: 28565 aagtacatcatttatcagtgttatcaatgctctgccacacatctgggctgtctgagcata 28506
Query: 2067 atccttctgtgtcatagttagatctgttcctaaaagcatatccagcattcc 2117
||||||||| |||||| | |||||||| || || ||||| || ||||||||
Sbjct: 28505 atccttctgagtcatactcagatctgtccccaagagcatgtcgagcattcc 28455
Score = 180 bits (91), Expect = 3e-042
Identities = 148/167 (88%)
Strand = Plus / Minus
Query: 2580 agttgcttccacacgttgctcaactgatgcatcagcagggagatcagggcggtacacagc 2639
||||||||||||||| | |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 27150 agttgcttccacacgctcctcaactgatgcatcagcagctagaccagggcgatacacagc 27091
Query: 2640 aaacgtgagaactactcccaagtggtttgatccaagcaaccgaaatgggtttgttaacac 2699
||| ||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||
Sbjct: 27090 aaaagtgagaactacccccaagtggtttgacccaagcaacctgaatgggtttgtcaacac 27031
Query: 2700 agctttgccagtagtcctggcccggaaaatgttttctcggtcctcct 2746
||||||||| |||| ||| || || || |||||||| ||||||||||
Sbjct: 27030 agctttgccggtagcccttgcacgtaagatgttttcccggtcctcct 26984
Score = 145 bits (73), Expect = 2e-031
Identities = 100/109 (91%)
Strand = Plus / Minus
Query: 2467 gaagcatttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctc 2526
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||
Sbjct: 27859 gaagcatttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactc 27800
Query: 2527 aacaaattctccacaagtgactccacatcaaaggctccaccgagatatc 2575
| |||||| ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 27799 agcaaattttccacgagtgactccacatcaaaagctccaccaagatatc 27751
Score = 143 bits (72), Expect = 7e-031
Identities = 132/152 (86%)
Strand = Plus / Minus
Query: 347 tcgttcccactaccaatctggagactgcttggtatagctgctcctcgtcgaagggtttag 406
|||||||||| || ||||||||||| |||||||||| ||||||||||||||| ||||| |
Sbjct: 31106 tcgttcccaccactaatctggagacagcttggtataactgctcctcgtcgaaaggtttgg 31047
Query: 407 atacgtatccatccattcccgattttatgcactcttcgtaagttgcctggataacatcgg 466
| || || |||||||||||||||||||| || ||||| || || ||||| || ||||| |
Sbjct: 31046 acacataaccatccattcccgattttatacattcttcatatgtcgcctgaatgacatccg 30987
Query: 467 ctgtcattgccagaacaggcagatggtactcg 498
| ||||||||||||||||||| |||| |||||
Sbjct: 30986 cggtcattgccagaacaggcaaatgggactcg 30955
Score = 129 bits (65), Expect = 1e-026
Identities = 152/181 (83%)
Strand = Plus / Minus
Query: 2179 gcaacatcagcagcttctgcctgcgtttttagctcttccatctttctgcaatcttcagta 2238
||||||||||||||||| || || ||||| ||||||||||||||||| ||||| || | |
Sbjct: 28228 gcaacatcagcagcttccgcttgagttttgagctcttccatctttctacaatcctctgaa 28169
Query: 2239 actttgtcatatcgagaatatgcagcagcaatgctatacccaagaagcatccatatgaca 2298
||||| ||||| ||||| |||| ||| ||| ||||||| | |||||||||||| |||
Sbjct: 28168 actttatcatagcgagaccatgcggcacaaattatataccccacaagcatccatataaca 28109
Query: 2299 aatgtgcccaaaggattggttatggcagaccacggcataggaagcttttgtctatacctg 2358
|| || ||||||||||| || || |||||||| |||| |||| ||||||| |||||||||
Sbjct: 28108 aaagttcccaaaggattagtgatagcagaccatggcagaggaggcttttgcctatacctg 28049
Query: 2359 c 2359
|
Sbjct: 28048 c 28048
Score = 105 bits (53), Expect = 2e-019
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 1788 tttgactgcattcccgaccaaatttgtcagtatctgtcgaaacctccaaggatctccaat 1847
|||||||||||| || ||||||||||||||||| |||||| | ||||| |||||||||||
Sbjct: 28977 tttgactgcatttcccaccaaatttgtcagtatttgtcgatatctccatggatctccaat 28918
Query: 1848 aacaaccttcggaacattgtcacatacaaatacggcaagct 1888
|||||| || ||||||| ||||||||||| || |||||||
Sbjct: 28917 aacaacttttggaacatcatcacatacaaacactgcaagct 28877
Score = 79.8 bits (40), Expect = 9e-012
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 2116 ccaaggacgccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 28376 ccaaggacgccattcataggtgttctgatctcatgggatacagttgccagaaactg 28321
Score = 77.8 bits (39), Expect = 3e-011
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 534 cttcctttcctcgttcgctttcaactccatttgccttatttgtccggttgcctcaaacc 592
||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||
Sbjct: 30922 cttcctttcctcgtttgcttttacctccatttgccttatttgtctagttgcctcaaacc 30864
Score = 61.9 bits (31), Expect = 2e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 1017 atctgtctcaggcctccagaagtcactctcaataaaaag 1055
|||||||||||||||||||| ||||||||| ||||||||
Sbjct: 30247 atctgtctcaggcctccagatgtcactctctataaaaag 30209
>gb|AACV01005369.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005369, whole
genome shotgun sequence
Length = 6338
Score = 394 bits (199), Expect = e-106
Identities = 544/659 (82%)
Strand = Plus / Minus
Query: 1129 ttcacaacttgaagaagtattcccaacctcttgaggtgatatcttgtaacagcactacgt 1188
|||||||||| || || |||||||||||| || |||||||||| ||| ||||| | ||||
Sbjct: 1152 ttcacaactttaacaactattcccaacctgttaaggtgatatcgtgtgacagctccacgt 1093
Query: 1189 acaggtctcccatctaccaagatggccttcattcccttaaaagcagttggtagtgcctct 1248
||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||
Sbjct: 1092 acaggtctcccatctactaaaatagccttcattcccttaaaggcagttggtagtgcctca 1033
Query: 1249 gtcaagctcctacttgaatcacccgaaatatctttgtatgagtgcttcagtgtggctgag 1308
| |||||||| ||||||||| ||| |||||||| ||||| |||| || ||||||
Sbjct: 1032 gataagctcctctttgaatcacttgaagtatctttgcatgagcgcttgaggacagctgag 973
Query: 1309 aaagtgaacgtgcttccaacagaaggatggctggtgaaacttatctgcccacccataagt 1368
|| || || || || |||||| | ||| |||| ||||||||||| || || |||||||||
Sbjct: 972 aatgtaaatgtactcccaacaaatggacggctagtgaaacttatttgaccgcccataagt 913
Query: 1369 tcagctagacacttgctgatgcttaaaccgatgccagtaccaccataattccttgaagtt 1428
||||||| ||| ||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 912 tcagctaaacatttgctgatgcttaaaccaatgccagttccaccatagttccttgaagtt 853
Query: 1429 gaactgtcagcctgcataaacggtgtaaaaacacgatcttgtgcttgcagtggtatcccg 1488
||||| ||||||||||| || || |||||||||||||||||||| || | ||| |||||
Sbjct: 852 gaactatcagcctgcatgaaaggcgtaaaaacacgatcttgtgcatgtaatgggatccca 793
Query: 1489 acacctgtgtcctcaatacttattgctagtgtgacacgatctgaatcactttgattagag 1548
|||||||| |||||||||||||| | || |||| || ||||| |||||| |||
Sbjct: 792 acacctgtatcctcaatacttatcatcaaggtcacacagtcacaatcattttgataagat 733
Query: 1549 ttttcgccctcaagatcatccaaaagcgactccttatcagagaggagcagtttaaaatat 1608
| |||| |||||| ||||||| | | | ||| |||||||| || ||||| ||||||||
Sbjct: 732 ctgtcgcactcaagctcatccatatggggctctttatcagatagcagcagcttaaaataa 673
Query: 1609 tgccaactatttcgtctgtctgctgcttcaaacccactcaaagtattgaaggcaccatta 1668
| ||| |||| || ||||| |||| ||| |||||||||||||||||||| ||||||
Sbjct: 672 tcccagttattgcgctcatctgcggcttgaaaaccactcaaagtattgaaggcgccatta 613
Query: 1669 gctgttgactcaactctaccacctttgccattcatggctccatgtaggacctgattggct 1728
||||| | ||||||| | || |||| |||||||||| ||||| ||||| ||||| |||
Sbjct: 612 gctgtagtctcaactttgccgtctttcccattcatggttccattaaggacttgattagct 553
Query: 1729 tccatatttgagttttcagccaaacacacccgcacaaatacatgacctcgttctgtgaa 1787
|||| |||||||| ||||||| || || |||||||||||||| || |||||||||||
Sbjct: 552 tccacttttgagttctcagccaggcagactcgcacaaatacatggccccgttctgtgaa 494
Score = 274 bits (138), Expect = 3e-070
Identities = 309/366 (84%)
Strand = Plus / Minus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatcgaagcgatgcgggggtt 649
|||| ||||||||||||||||||||||||||||| |||||||| |||| || || |||
Sbjct: 2017 acccatccatctctggcatctgaacatccataaagcatgcatcaaagcagtgtggttgtt 1958
Query: 650 gaagtagactgatagcatccttgccgctttcaacacagctaacattagcaccatatttct 709
|||||| || ||||| ||||||||||||||||| ||| || |||||||||||||
Sbjct: 1957 gaagtaaggagactgcatctttgccgctttcaacacaatgaactttggcaccatatttct 1898
Query: 710 tgagtgcagccgcagcaactctgaggttgactttattatcgtctacgaccaatatattct 769
|||| ||||| |||||||| ||||| |||||||||||||| ||||| | |||||||||||
Sbjct: 1897 tgagcgcagctgcagcaaccctgagattgactttattatcatctacaatcaatatattct 1838
Query: 770 tcccaaccagcaagcttcgaagaaacgacggccggttttgattatcttttctttcggcta 829
|||||| ||||||||| || ||||| || |||| |||||||| ||||| ||||| | |
Sbjct: 1837 tcccaatcagcaagctgcggagaaatgagggcctattttgattgtctttcctttcaggca 1778
Query: 830 tctctactttgagcagttgttgaatagatgaagcgattgtgcttgcccttataggcttac 889
|| ||||||| |||| ||||||| | ||||| |||||||||||||||||||| |||
Sbjct: 1777 tcactacttttagcaactgttgaaggcaagaagcaattgtgcttgcccttataggtttat 1718
Query: 890 acatcacaatatcaaatatggatccatatttgtccttgtcggcttcagaggtgaccaaaa 949
||||||||||||||||| |||||||||| |||||||||| ||||| || || |||||||
Sbjct: 1717 acatcacaatatcaaatgcggatccatatctgtccttgtcagcttctgatgttaccaaaa 1658
Query: 950 gaacta 955
||||||
Sbjct: 1657 gaacta 1652
Score = 143 bits (72), Expect = 7e-031
Identities = 132/152 (86%)
Strand = Plus / Minus
Query: 347 tcgttcccactaccaatctggagactgcttggtatagctgctcctcgtcgaagggtttag 406
|||||||||| || ||||||||||| |||||||||| ||||||||||||||| ||||| |
Sbjct: 2446 tcgttcccaccactaatctggagacagcttggtataactgctcctcgtcgaaaggtttgg 2387
Query: 407 atacgtatccatccattcccgattttatgcactcttcgtaagttgcctggataacatcgg 466
| || || |||||||||||||||||||| || ||||| || || ||||| || ||||| |
Sbjct: 2386 acacataaccatccattcccgattttatacattcttcatatgtcgcctgaatgacatccg 2327
Query: 467 ctgtcattgccagaacaggcagatggtactcg 498
| ||||||||||||||||||| |||| |||||
Sbjct: 2326 cggtcattgccagaacaggcaaatgggactcg 2295
Score = 105 bits (53), Expect = 2e-019
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 1788 tttgactgcattcccgaccaaatttgtcagtatctgtcgaaacctccaaggatctccaat 1847
|||||||||||| || ||||||||||||||||| |||||| | ||||| |||||||||||
Sbjct: 317 tttgactgcatttcccaccaaatttgtcagtatttgtcgatatctccatggatctccaat 258
Query: 1848 aacaaccttcggaacattgtcacatacaaatacggcaagct 1888
|||||| || ||||||| ||||||||||| || |||||||
Sbjct: 257 aacaacttttggaacatcatcacatacaaacactgcaagct 217
Score = 77.8 bits (39), Expect = 3e-011
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 534 cttcctttcctcgttcgctttcaactccatttgccttatttgtccggttgcctcaaacc 592
||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||
Sbjct: 2262 cttcctttcctcgtttgcttttacctccatttgccttatttgtctagttgcctcaaacc 2204
Score = 61.9 bits (31), Expect = 2e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 1017 atctgtctcaggcctccagaagtcactctcaataaaaag 1055
|||||||||||||||||||| ||||||||| ||||||||
Sbjct: 1587 atctgtctcaggcctccagatgtcactctctataaaaag 1549
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 394 bits (199), Expect = e-106
Identities = 544/659 (82%)
Strand = Plus / Minus
Query: 1129 ttcacaacttgaagaagtattcccaacctcttgaggtgatatcttgtaacagcactacgt 1188
|||||||||| || || |||||||||||| || |||||||||| ||| ||||| | ||||
Sbjct: 6011234 ttcacaactttaacaactattcccaacctgttaaggtgatatcgtgtgacagctccacgt 6011175
Query: 1189 acaggtctcccatctaccaagatggccttcattcccttaaaagcagttggtagtgcctct 1248
||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||
Sbjct: 6011174 acaggtctcccatctactaaaatagccttcattcccttaaaggcagttggtagtgcctca 6011115
Query: 1249 gtcaagctcctacttgaatcacccgaaatatctttgtatgagtgcttcagtgtggctgag 1308
| |||||||| ||||||||| ||| |||||||| ||||| |||| || ||||||
Sbjct: 6011114 gataagctcctctttgaatcacttgaagtatctttgcatgagcgcttgaggacagctgag 6011055
Query: 1309 aaagtgaacgtgcttccaacagaaggatggctggtgaaacttatctgcccacccataagt 1368
|| || || || || |||||| | ||| |||| ||||||||||| || || |||||||||
Sbjct: 6011054 aatgtaaatgtactcccaacaaatggacggctagtgaaacttatttgaccgcccataagt 6010995
Query: 1369 tcagctagacacttgctgatgcttaaaccgatgccagtaccaccataattccttgaagtt 1428
||||||| ||| ||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 6010994 tcagctaaacatttgctgatgcttaaaccaatgccagttccaccatagttccttgaagtt 6010935
Query: 1429 gaactgtcagcctgcataaacggtgtaaaaacacgatcttgtgcttgcagtggtatcccg 1488
||||| ||||||||||| || || |||||||||||||||||||| || | ||| |||||
Sbjct: 6010934 gaactatcagcctgcatgaaaggcgtaaaaacacgatcttgtgcatgtaatgggatccca 6010875
Query: 1489 acacctgtgtcctcaatacttattgctagtgtgacacgatctgaatcactttgattagag 1548
|||||||| |||||||||||||| | || |||| || ||||| |||||| |||
Sbjct: 6010874 acacctgtatcctcaatacttatcatcaaggtcacacagtcacaatcattttgataagat 6010815
Query: 1549 ttttcgccctcaagatcatccaaaagcgactccttatcagagaggagcagtttaaaatat 1608
| |||| |||||| ||||||| | | | ||| |||||||| || ||||| ||||||||
Sbjct: 6010814 ctgtcgcactcaagctcatccatatggggctctttatcagatagcagcagcttaaaataa 6010755
Query: 1609 tgccaactatttcgtctgtctgctgcttcaaacccactcaaagtattgaaggcaccatta 1668
| ||| |||| || ||||| |||| ||| |||||||||||||||||||| ||||||
Sbjct: 6010754 tcccagttattgcgctcatctgcggcttgaaaaccactcaaagtattgaaggcgccatta 6010695
Query: 1669 gctgttgactcaactctaccacctttgccattcatggctccatgtaggacctgattggct 1728
||||| | ||||||| | || |||| |||||||||| ||||| ||||| ||||| |||
Sbjct: 6010694 gctgtagtctcaactttgccgtctttcccattcatggttccattaaggacttgattagct 6010635
Query: 1729 tccatatttgagttttcagccaaacacacccgcacaaatacatgacctcgttctgtgaa 1787
|||| |||||||| ||||||| || || |||||||||||||| || |||||||||||
Sbjct: 6010634 tccacttttgagttctcagccaggcagactcgcacaaatacatggccccgttctgtgaa 6010576
Score = 274 bits (138), Expect = 3e-070
Identities = 309/366 (84%)
Strand = Plus / Minus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatcgaagcgatgcgggggtt 649
|||| ||||||||||||||||||||||||||||| |||||||| |||| || || |||
Sbjct: 6012099 acccatccatctctggcatctgaacatccataaagcatgcatcaaagcagtgtggttgtt 6012040
Query: 650 gaagtagactgatagcatccttgccgctttcaacacagctaacattagcaccatatttct 709
|||||| || ||||| ||||||||||||||||| ||| || |||||||||||||
Sbjct: 6012039 gaagtaaggagactgcatctttgccgctttcaacacaatgaactttggcaccatatttct 6011980
Query: 710 tgagtgcagccgcagcaactctgaggttgactttattatcgtctacgaccaatatattct 769
|||| ||||| |||||||| ||||| |||||||||||||| ||||| | |||||||||||
Sbjct: 6011979 tgagcgcagctgcagcaaccctgagattgactttattatcatctacaatcaatatattct 6011920
Query: 770 tcccaaccagcaagcttcgaagaaacgacggccggttttgattatcttttctttcggcta 829
|||||| ||||||||| || ||||| || |||| |||||||| ||||| ||||| | |
Sbjct: 6011919 tcccaatcagcaagctgcggagaaatgagggcctattttgattgtctttcctttcaggca 6011860
Query: 830 tctctactttgagcagttgttgaatagatgaagcgattgtgcttgcccttataggcttac 889
|| ||||||| |||| ||||||| | ||||| |||||||||||||||||||| |||
Sbjct: 6011859 tcactacttttagcaactgttgaaggcaagaagcaattgtgcttgcccttataggtttat 6011800
Query: 890 acatcacaatatcaaatatggatccatatttgtccttgtcggcttcagaggtgaccaaaa 949
||||||||||||||||| |||||||||| |||||||||| ||||| || || |||||||
Sbjct: 6011799 acatcacaatatcaaatgcggatccatatctgtccttgtcagcttctgatgttaccaaaa 6011740
Query: 950 gaacta 955
||||||
Sbjct: 6011739 gaacta 6011734
Score = 226 bits (114), Expect = 6e-056
Identities = 207/238 (86%)
Strand = Plus / Minus
Query: 2744 cctccccagacatcatgtcaatgcgtgcaaggtaggaaaccgtatcctgagagaaaatca 2803
||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct: 6008300 cctccccagacatcatgtcgatacgtgcaaggtaggaaaccgtatcctgtgaaaaaatca 6008241
Query: 2804 ctggggcgtattcaacctgcggaggtgcaggctcccgctgcatcgtattcataacccatc 2863
||||||| || ||| |||| ||||| |||| || |||| |||||| ||||||| |||||
Sbjct: 6008240 ctggggcatactcatcctgtggaggcgcagcctgtcgcttcatcgtcttcataatccatc 6008181
Query: 2864 cctgctggctttcaaacatttccctctcatgatggaatacacgctgtgcgaatgccaccc 2923
|||||||| | ||||||||||||||||| |||||||| | |||||| || ||||||| |
Sbjct: 6008180 cctgctggttctcaaacatttccctctcgtgatggaagatacgctgcgcatatgccactc 6008121
Query: 2924 cattgagcagcggtcgctcaaatgatgtccttgccgtgtattttgcaaaggtgtcctg 2981
|||| ||||| || |||||||| ||||||||||||||||| |||||||| || |||||
Sbjct: 6008120 cattcagcagtgggcgctcaaacgatgtccttgccgtgtactttgcaaatgtatcctg 6008063
Score = 224 bits (113), Expect = 2e-055
Identities = 164/181 (90%)
Strand = Plus / Minus
Query: 2978 cctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatgg 3037
||||||||||||| | ||| |||||||||| | ||||||||||||||| ||||||| ||
Sbjct: 6007301 cctggtcgatggcggacgggaacttctcgaaatggaaggtggagatgaggatggcgaggg 6007242
Query: 3038 cgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgc 3097
|||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||
Sbjct: 6007241 cgtggacgtggttgacggtgacgccgaactgctcctgcagcatcctcgcccgctcctcgc 6007182
Query: 3098 acatgctgacgaggcgctcctcggcgcggtccatgctgtcccggcgcagggtccagtgca 3157
||||||||||||| ||||||||||||||||||||| | ||||| |||||| ||||||||
Sbjct: 6007181 acatgctgacgagccgctcctcggcgcggtccatggtctcccgccgcaggtgccagtgca 6007122
Query: 3158 t 3158
|
Sbjct: 6007121 t 6007121
Score = 204 bits (103), Expect = 2e-049
Identities = 199/231 (86%)
Strand = Plus / Minus
Query: 1887 ctcaatgcacttctcccgtgactttgaagaaaacaaggaaacaacatcatccatgagaga 1946
||||||||||||||| | ||| ||||||||||| ||||| | |||||||||||||||||
Sbjct: 6010107 ctcaatgcacttctctcttgattttgaagaaaataaggagatcacatcatccatgagaga 6010048
Query: 1947 acgcaggtcaaaaggcaccgcttcaagctctaactttccagcctcaatctttgctcgatc 2006
||||||||||| ||||| || |||||||| || || || || |||||||| || |||||
Sbjct: 6010047 ccgcaggtcaaatggcactgcctcaagctccaatttccctgcttcaatcttagcccgatc 6009988
Query: 2007 aaggacatcatttatcagtgtaatcaatgctctgccacacatttgagcagtttgagcata 2066
||| ||||||||||||||||| |||||||||||||||||||| || || || ||||||||
Sbjct: 6009987 aagtacatcatttatcagtgttatcaatgctctgccacacatctgggctgtctgagcata 6009928
Query: 2067 atccttctgtgtcatagttagatctgttcctaaaagcatatccagcattcc 2117
||||||||| |||||| | |||||||| || || ||||| || ||||||||
Sbjct: 6009927 atccttctgagtcatactcagatctgtccccaagagcatgtcgagcattcc 6009877
Score = 180 bits (91), Expect = 3e-042
Identities = 148/167 (88%)
Strand = Plus / Minus
Query: 2580 agttgcttccacacgttgctcaactgatgcatcagcagggagatcagggcggtacacagc 2639
||||||||||||||| | |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 6008572 agttgcttccacacgctcctcaactgatgcatcagcagctagaccagggcgatacacagc 6008513
Query: 2640 aaacgtgagaactactcccaagtggtttgatccaagcaaccgaaatgggtttgttaacac 2699
||| ||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||
Sbjct: 6008512 aaaagtgagaactacccccaagtggtttgacccaagcaacctgaatgggtttgtcaacac 6008453
Query: 2700 agctttgccagtagtcctggcccggaaaatgttttctcggtcctcct 2746
||||||||| |||| ||| || || || |||||||| ||||||||||
Sbjct: 6008452 agctttgccggtagcccttgcacgtaagatgttttcccggtcctcct 6008406
Score = 145 bits (73), Expect = 2e-031
Identities = 100/109 (91%)
Strand = Plus / Minus
Query: 2467 gaagcatttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctc 2526
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||
Sbjct: 6009281 gaagcatttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactc 6009222
Query: 2527 aacaaattctccacaagtgactccacatcaaaggctccaccgagatatc 2575
| |||||| ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 6009221 agcaaattttccacgagtgactccacatcaaaagctccaccaagatatc 6009173
Score = 143 bits (72), Expect = 7e-031
Identities = 132/152 (86%)
Strand = Plus / Minus
Query: 347 tcgttcccactaccaatctggagactgcttggtatagctgctcctcgtcgaagggtttag 406
|||||||||| || ||||||||||| |||||||||| ||||||||||||||| ||||| |
Sbjct: 6012528 tcgttcccaccactaatctggagacagcttggtataactgctcctcgtcgaaaggtttgg 6012469
Query: 407 atacgtatccatccattcccgattttatgcactcttcgtaagttgcctggataacatcgg 466
| || || |||||||||||||||||||| || ||||| || || ||||| || ||||| |
Sbjct: 6012468 acacataaccatccattcccgattttatacattcttcatatgtcgcctgaatgacatccg 6012409
Query: 467 ctgtcattgccagaacaggcagatggtactcg 498
| ||||||||||||||||||| |||| |||||
Sbjct: 6012408 cggtcattgccagaacaggcaaatgggactcg 6012377
Score = 129 bits (65), Expect = 1e-026
Identities = 152/181 (83%)
Strand = Plus / Minus
Query: 2179 gcaacatcagcagcttctgcctgcgtttttagctcttccatctttctgcaatcttcagta 2238
||||||||||||||||| || || ||||| ||||||||||||||||| ||||| || | |
Sbjct: 6009650 gcaacatcagcagcttccgcttgagttttgagctcttccatctttctacaatcctctgaa 6009591
Query: 2239 actttgtcatatcgagaatatgcagcagcaatgctatacccaagaagcatccatatgaca 2298
||||| ||||| ||||| |||| ||| ||| ||||||| | |||||||||||| |||
Sbjct: 6009590 actttatcatagcgagaccatgcggcacaaattatataccccacaagcatccatataaca 6009531
Query: 2299 aatgtgcccaaaggattggttatggcagaccacggcataggaagcttttgtctatacctg 2358
|| || ||||||||||| || || |||||||| |||| |||| ||||||| |||||||||
Sbjct: 6009530 aaagttcccaaaggattagtgatagcagaccatggcagaggaggcttttgcctatacctg 6009471
Query: 2359 c 2359
|
Sbjct: 6009470 c 6009470
Score = 105 bits (53), Expect = 2e-019
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 1788 tttgactgcattcccgaccaaatttgtcagtatctgtcgaaacctccaaggatctccaat 1847
|||||||||||| || ||||||||||||||||| |||||| | ||||| |||||||||||
Sbjct: 6010399 tttgactgcatttcccaccaaatttgtcagtatttgtcgatatctccatggatctccaat 6010340
Query: 1848 aacaaccttcggaacattgtcacatacaaatacggcaagct 1888
|||||| || ||||||| ||||||||||| || |||||||
Sbjct: 6010339 aacaacttttggaacatcatcacatacaaacactgcaagct 6010299
Score = 79.8 bits (40), Expect = 9e-012
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 2116 ccaaggacgccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 6009798 ccaaggacgccattcataggtgttctgatctcatgggatacagttgccagaaactg 6009743
Score = 77.8 bits (39), Expect = 3e-011
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 534 cttcctttcctcgttcgctttcaactccatttgccttatttgtccggttgcctcaaacc 592
||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||
Sbjct: 6012344 cttcctttcctcgtttgcttttacctccatttgccttatttgtctagttgcctcaaacc 6012286
Score = 61.9 bits (31), Expect = 2e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 1017 atctgtctcaggcctccagaagtcactctcaataaaaag 1055
|||||||||||||||||||| ||||||||| ||||||||
Sbjct: 6011669 atctgtctcaggcctccagatgtcactctctataaaaag 6011631
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 394 bits (199), Expect = e-106
Identities = 544/659 (82%)
Strand = Plus / Minus
Query: 1129 ttcacaacttgaagaagtattcccaacctcttgaggtgatatcttgtaacagcactacgt 1188
|||||||||| || || |||||||||||| || |||||||||| ||| ||||| | ||||
Sbjct: 17340313 ttcacaactttaacaactattcccaacctgttaaggtgatatcgtgtgacagctccacgt 17340254
Query: 1189 acaggtctcccatctaccaagatggccttcattcccttaaaagcagttggtagtgcctct 1248
||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||
Sbjct: 17340253 acaggtctcccatctactaaaatagccttcattcccttaaaggcagttggtagtgcctca 17340194
Query: 1249 gtcaagctcctacttgaatcacccgaaatatctttgtatgagtgcttcagtgtggctgag 1308
| |||||||| ||||||||| ||| |||||||| ||||| |||| || ||||||
Sbjct: 17340193 gataagctcctctttgaatcacttgaagtatctttgcatgagcgcttgaggacagctgag 17340134
Query: 1309 aaagtgaacgtgcttccaacagaaggatggctggtgaaacttatctgcccacccataagt 1368
|| || || || || |||||| | ||| |||| ||||||||||| || || |||||||||
Sbjct: 17340133 aatgtaaatgtactcccaacaaatggacggctagtgaaacttatttgaccgcccataagt 17340074
Query: 1369 tcagctagacacttgctgatgcttaaaccgatgccagtaccaccataattccttgaagtt 1428
||||||| ||| ||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 17340073 tcagctaaacatttgctgatgcttaaaccaatgccagttccaccatagttccttgaagtt 17340014
Query: 1429 gaactgtcagcctgcataaacggtgtaaaaacacgatcttgtgcttgcagtggtatcccg 1488
||||| ||||||||||| || || |||||||||||||||||||| || | ||| |||||
Sbjct: 17340013 gaactatcagcctgcatgaaaggcgtaaaaacacgatcttgtgcatgtaatgggatccca 17339954
Query: 1489 acacctgtgtcctcaatacttattgctagtgtgacacgatctgaatcactttgattagag 1548
|||||||| |||||||||||||| | || |||| || ||||| |||||| |||
Sbjct: 17339953 acacctgtatcctcaatacttatcatcaaggtcacacagtcacaatcattttgataagat 17339894
Query: 1549 ttttcgccctcaagatcatccaaaagcgactccttatcagagaggagcagtttaaaatat 1608
| |||| |||||| ||||||| | | | ||| |||||||| || ||||| ||||||||
Sbjct: 17339893 ctgtcgcactcaagctcatccatatggggctctttatcagatagcagcagcttaaaataa 17339834
Query: 1609 tgccaactatttcgtctgtctgctgcttcaaacccactcaaagtattgaaggcaccatta 1668
| ||| |||| || ||||| |||| ||| |||||||||||||||||||| ||||||
Sbjct: 17339833 tcccagttattgcgctcatctgcggcttgaaaaccactcaaagtattgaaggcgccatta 17339774
Query: 1669 gctgttgactcaactctaccacctttgccattcatggctccatgtaggacctgattggct 1728
||||| | ||||||| | || |||| |||||||||| ||||| ||||| ||||| |||
Sbjct: 17339773 gctgtagtctcaactttgccgtctttcccattcatggttccattaaggacttgattagct 17339714
Query: 1729 tccatatttgagttttcagccaaacacacccgcacaaatacatgacctcgttctgtgaa 1787
|||| |||||||| ||||||| || || |||||||||||||| || |||||||||||
Sbjct: 17339713 tccacttttgagttctcagccaggcagactcgcacaaatacatggccccgttctgtgaa 17339655
Score = 274 bits (138), Expect = 3e-070
Identities = 309/366 (84%)
Strand = Plus / Minus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatcgaagcgatgcgggggtt 649
|||| ||||||||||||||||||||||||||||| |||||||| |||| || || |||
Sbjct: 17341178 acccatccatctctggcatctgaacatccataaagcatgcatcaaagcagtgtggttgtt 17341119
Query: 650 gaagtagactgatagcatccttgccgctttcaacacagctaacattagcaccatatttct 709
|||||| || ||||| ||||||||||||||||| ||| || |||||||||||||
Sbjct: 17341118 gaagtaaggagactgcatctttgccgctttcaacacaatgaactttggcaccatatttct 17341059
Query: 710 tgagtgcagccgcagcaactctgaggttgactttattatcgtctacgaccaatatattct 769
|||| ||||| |||||||| ||||| |||||||||||||| ||||| | |||||||||||
Sbjct: 17341058 tgagcgcagctgcagcaaccctgagattgactttattatcatctacaatcaatatattct 17340999
Query: 770 tcccaaccagcaagcttcgaagaaacgacggccggttttgattatcttttctttcggcta 829
|||||| ||||||||| || ||||| || |||| |||||||| ||||| ||||| | |
Sbjct: 17340998 tcccaatcagcaagctgcggagaaatgagggcctattttgattgtctttcctttcaggca 17340939
Query: 830 tctctactttgagcagttgttgaatagatgaagcgattgtgcttgcccttataggcttac 889
|| ||||||| |||| ||||||| | ||||| |||||||||||||||||||| |||
Sbjct: 17340938 tcactacttttagcaactgttgaaggcaagaagcaattgtgcttgcccttataggtttat 17340879
Query: 890 acatcacaatatcaaatatggatccatatttgtccttgtcggcttcagaggtgaccaaaa 949
||||||||||||||||| |||||||||| |||||||||| ||||| || || |||||||
Sbjct: 17340878 acatcacaatatcaaatgcggatccatatctgtccttgtcagcttctgatgttaccaaaa 17340819
Query: 950 gaacta 955
||||||
Sbjct: 17340818 gaacta 17340813
Score = 226 bits (114), Expect = 6e-056
Identities = 207/238 (86%)
Strand = Plus / Minus
Query: 2744 cctccccagacatcatgtcaatgcgtgcaaggtaggaaaccgtatcctgagagaaaatca 2803
||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct: 17337501 cctccccagacatcatgtcgatacgtgcaaggtaggaaaccgtatcctgtgaaaaaatca 17337442
Query: 2804 ctggggcgtattcaacctgcggaggtgcaggctcccgctgcatcgtattcataacccatc 2863
||||||| || ||| |||| ||||| |||| || |||| |||||| ||||||| |||||
Sbjct: 17337441 ctggggcatactcatcctgtggaggcgcagcctgtcgcttcatcgtcttcataatccatc 17337382
Query: 2864 cctgctggctttcaaacatttccctctcatgatggaatacacgctgtgcgaatgccaccc 2923
|||||||| | ||||||||||||||||| |||||||| | |||||| || ||||||| |
Sbjct: 17337381 cctgctggttctcaaacatttccctctcgtgatggaagatacgctgcgcatatgccactc 17337322
Query: 2924 cattgagcagcggtcgctcaaatgatgtccttgccgtgtattttgcaaaggtgtcctg 2981
|||| ||||| || |||||||| ||||||||||||||||| |||||||| || |||||
Sbjct: 17337321 cattcagcagtgggcgctcaaacgatgtccttgccgtgtactttgcaaatgtatcctg 17337264
Score = 224 bits (113), Expect = 2e-055
Identities = 164/181 (90%)
Strand = Plus / Minus
Query: 2978 cctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatgg 3037
||||||||||||| | ||| |||||||||| | ||||||||||||||| ||||||| ||
Sbjct: 17336502 cctggtcgatggcggacgggaacttctcgaaatggaaggtggagatgaggatggcgaggg 17336443
Query: 3038 cgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgc 3097
|||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||
Sbjct: 17336442 cgtggacgtggttgacggtgacgccgaactgctcctgcagcatcctcgcccgctcctcgc 17336383
Query: 3098 acatgctgacgaggcgctcctcggcgcggtccatgctgtcccggcgcagggtccagtgca 3157
||||||||||||| ||||||||||||||||||||| | ||||| |||||| ||||||||
Sbjct: 17336382 acatgctgacgagccgctcctcggcgcggtccatggtctcccgccgcaggtgccagtgca 17336323
Query: 3158 t 3158
|
Sbjct: 17336322 t 17336322
Score = 180 bits (91), Expect = 3e-042
Identities = 148/167 (88%)
Strand = Plus / Minus
Query: 2580 agttgcttccacacgttgctcaactgatgcatcagcagggagatcagggcggtacacagc 2639
||||||||||||||| | |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 17337773 agttgcttccacacgctcctcaactgatgcatcagcagctagaccagggcgatacacagc 17337714
Query: 2640 aaacgtgagaactactcccaagtggtttgatccaagcaaccgaaatgggtttgttaacac 2699
||| ||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||
Sbjct: 17337713 aaaagtgagaactacccccaagtggtttgacccaagcaacctgaatgggtttgtcaacac 17337654
Query: 2700 agctttgccagtagtcctggcccggaaaatgttttctcggtcctcct 2746
||||||||| |||| ||| || || || |||||||| ||||||||||
Sbjct: 17337653 agctttgccggtagcccttgcacgtaagatgttttcccggtcctcct 17337607
Score = 145 bits (73), Expect = 2e-031
Identities = 100/109 (91%)
Strand = Plus / Minus
Query: 2467 gaagcatttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctc 2526
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||
Sbjct: 17338482 gaagcatttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactc 17338423
Query: 2527 aacaaattctccacaagtgactccacatcaaaggctccaccgagatatc 2575
| |||||| ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 17338422 agcaaattttccacgagtgactccacatcaaaagctccaccaagatatc 17338374
Score = 143 bits (72), Expect = 7e-031
Identities = 132/152 (86%)
Strand = Plus / Minus
Query: 347 tcgttcccactaccaatctggagactgcttggtatagctgctcctcgtcgaagggtttag 406
|||||||||| || ||||||||||| |||||||||| ||||||||||||||| ||||| |
Sbjct: 17341607 tcgttcccaccactaatctggagacagcttggtataactgctcctcgtcgaaaggtttgg 17341548
Query: 407 atacgtatccatccattcccgattttatgcactcttcgtaagttgcctggataacatcgg 466
| || || |||||||||||||||||||| || ||||| || || ||||| || ||||| |
Sbjct: 17341547 acacataaccatccattcccgattttatacattcttcatatgtcgcctgaatgacatccg 17341488
Query: 467 ctgtcattgccagaacaggcagatggtactcg 498
| ||||||||||||||||||| |||| |||||
Sbjct: 17341487 cggtcattgccagaacaggcaaatgggactcg 17341456
Score = 129 bits (65), Expect = 1e-026
Identities = 152/181 (83%)
Strand = Plus / Minus
Query: 2179 gcaacatcagcagcttctgcctgcgtttttagctcttccatctttctgcaatcttcagta 2238
||||||||||||||||| || || ||||| ||||||||||||||||| ||||| || | |
Sbjct: 17338851 gcaacatcagcagcttccgcttgagttttgagctcttccatctttctacaatcctctgaa 17338792
Query: 2239 actttgtcatatcgagaatatgcagcagcaatgctatacccaagaagcatccatatgaca 2298
||||| ||||| ||||| |||| ||| ||| ||||||| | |||||||||||| |||
Sbjct: 17338791 actttatcatagcgagaccatgcggcacaaattatataccccacaagcatccatataaca 17338732
Query: 2299 aatgtgcccaaaggattggttatggcagaccacggcataggaagcttttgtctatacctg 2358
|| || ||||||||||| || || |||||||| |||| |||| ||||||| |||||||||
Sbjct: 17338731 aaagttcccaaaggattagtgatagcagaccatggcagaggaggcttttgcctatacctg 17338672
Query: 2359 c 2359
|
Sbjct: 17338671 c 17338671
Score = 105 bits (53), Expect = 2e-019
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 1788 tttgactgcattcccgaccaaatttgtcagtatctgtcgaaacctccaaggatctccaat 1847
|||||||||||| || ||||||||||||||||| |||||| | ||||| |||||||||||
Sbjct: 17339478 tttgactgcatttcccaccaaatttgtcagtatttgtcgatatctccatggatctccaat 17339419
Query: 1848 aacaaccttcggaacattgtcacatacaaatacggcaagct 1888
|||||| || ||||||| ||||||||||| || |||||||
Sbjct: 17339418 aacaacttttggaacatcatcacatacaaacactgcaagct 17339378
Score = 79.8 bits (40), Expect = 9e-012
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 2116 ccaaggacgccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 17338999 ccaaggacgccattcataggtgttctgatctcatgggatacagttgccagaaactg 17338944
Score = 77.8 bits (39), Expect = 3e-011
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 534 cttcctttcctcgttcgctttcaactccatttgccttatttgtccggttgcctcaaacc 592
||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||
Sbjct: 17341423 cttcctttcctcgtttgcttttacctccatttgccttatttgtctagttgcctcaaacc 17341365
Score = 61.9 bits (31), Expect = 2e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 1017 atctgtctcaggcctccagaagtcactctcaataaaaag 1055
|||||||||||||||||||| ||||||||| ||||||||
Sbjct: 17340748 atctgtctcaggcctccagatgtcactctctataaaaag 17340710
Score = 52.0 bits (26), Expect = 0.002
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3286 tcctcctcctctttctcttcctcctt 3311
||||||||||||||||||||||||||
Sbjct: 6162384 tcctcctcctctttctcttcctcctt 6162409
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 394 bits (199), Expect = e-106
Identities = 544/659 (82%)
Strand = Plus / Minus
Query: 1129 ttcacaacttgaagaagtattcccaacctcttgaggtgatatcttgtaacagcactacgt 1188
|||||||||| || || |||||||||||| || |||||||||| ||| ||||| | ||||
Sbjct: 30793377 ttcacaactttaacaactattcccaacctgttaaggtgatatcgtgtgacagctccacgt 30793318
Query: 1189 acaggtctcccatctaccaagatggccttcattcccttaaaagcagttggtagtgcctct 1248
||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||
Sbjct: 30793317 acaggtctcccatctactaaaatagccttcattcccttaaaggcagttggtagtgcctca 30793258
Query: 1249 gtcaagctcctacttgaatcacccgaaatatctttgtatgagtgcttcagtgtggctgag 1308
| |||||||| ||||||||| ||| |||||||| ||||| |||| || ||||||
Sbjct: 30793257 gataagctcctctttgaatcacttgaagtatctttgcatgagcgcttgaggacagctgag 30793198
Query: 1309 aaagtgaacgtgcttccaacagaaggatggctggtgaaacttatctgcccacccataagt 1368
|| || || || || |||||| | ||| |||| ||||||||||| || || |||||||||
Sbjct: 30793197 aatgtaaatgtactcccaacaaatggacggctagtgaaacttatttgaccgcccataagt 30793138
Query: 1369 tcagctagacacttgctgatgcttaaaccgatgccagtaccaccataattccttgaagtt 1428
||||||| ||| ||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 30793137 tcagctaaacatttgctgatgcttaaaccaatgccagttccaccatagttccttgaagtt 30793078
Query: 1429 gaactgtcagcctgcataaacggtgtaaaaacacgatcttgtgcttgcagtggtatcccg 1488
||||| ||||||||||| || || |||||||||||||||||||| || | ||| |||||
Sbjct: 30793077 gaactatcagcctgcatgaaaggcgtaaaaacacgatcttgtgcatgtaatgggatccca 30793018
Query: 1489 acacctgtgtcctcaatacttattgctagtgtgacacgatctgaatcactttgattagag 1548
|||||||| |||||||||||||| | || |||| || ||||| |||||| |||
Sbjct: 30793017 acacctgtatcctcaatacttatcatcaaggtcacacagtcacaatcattttgataagat 30792958
Query: 1549 ttttcgccctcaagatcatccaaaagcgactccttatcagagaggagcagtttaaaatat 1608
| |||| |||||| ||||||| | | | ||| |||||||| || ||||| ||||||||
Sbjct: 30792957 ctgtcgcactcaagctcatccatatggggctctttatcagatagcagcagcttaaaataa 30792898
Query: 1609 tgccaactatttcgtctgtctgctgcttcaaacccactcaaagtattgaaggcaccatta 1668
| ||| |||| || ||||| |||| ||| |||||||||||||||||||| ||||||
Sbjct: 30792897 tcccagttattgcgctcatctgcggcttgaaaaccactcaaagtattgaaggcgccatta 30792838
Query: 1669 gctgttgactcaactctaccacctttgccattcatggctccatgtaggacctgattggct 1728
||||| | ||||||| | || |||| |||||||||| ||||| ||||| ||||| |||
Sbjct: 30792837 gctgtagtctcaactttgccgtctttcccattcatggttccattaaggacttgattagct 30792778
Query: 1729 tccatatttgagttttcagccaaacacacccgcacaaatacatgacctcgttctgtgaa 1787
|||| |||||||| ||||||| || || |||||||||||||| || |||||||||||
Sbjct: 30792777 tccacttttgagttctcagccaggcagactcgcacaaatacatggccccgttctgtgaa 30792719
Score = 274 bits (138), Expect = 3e-070
Identities = 309/366 (84%)
Strand = Plus / Minus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatcgaagcgatgcgggggtt 649
|||| ||||||||||||||||||||||||||||| |||||||| |||| || || |||
Sbjct: 30794242 acccatccatctctggcatctgaacatccataaagcatgcatcaaagcagtgtggttgtt 30794183
Query: 650 gaagtagactgatagcatccttgccgctttcaacacagctaacattagcaccatatttct 709
|||||| || ||||| ||||||||||||||||| ||| || |||||||||||||
Sbjct: 30794182 gaagtaaggagactgcatctttgccgctttcaacacaatgaactttggcaccatatttct 30794123
Query: 710 tgagtgcagccgcagcaactctgaggttgactttattatcgtctacgaccaatatattct 769
|||| ||||| |||||||| ||||| |||||||||||||| ||||| | |||||||||||
Sbjct: 30794122 tgagcgcagctgcagcaaccctgagattgactttattatcatctacaatcaatatattct 30794063
Query: 770 tcccaaccagcaagcttcgaagaaacgacggccggttttgattatcttttctttcggcta 829
|||||| ||||||||| || ||||| || |||| |||||||| ||||| ||||| | |
Sbjct: 30794062 tcccaatcagcaagctgcggagaaatgagggcctattttgattgtctttcctttcaggca 30794003
Query: 830 tctctactttgagcagttgttgaatagatgaagcgattgtgcttgcccttataggcttac 889
|| ||||||| |||| ||||||| | ||||| |||||||||||||||||||| |||
Sbjct: 30794002 tcactacttttagcaactgttgaaggcaagaagcaattgtgcttgcccttataggtttat 30793943
Query: 890 acatcacaatatcaaatatggatccatatttgtccttgtcggcttcagaggtgaccaaaa 949
||||||||||||||||| |||||||||| |||||||||| ||||| || || |||||||
Sbjct: 30793942 acatcacaatatcaaatgcggatccatatctgtccttgtcagcttctgatgttaccaaaa 30793883
Query: 950 gaacta 955
||||||
Sbjct: 30793882 gaacta 30793877
Score = 226 bits (114), Expect = 6e-056
Identities = 207/238 (86%)
Strand = Plus / Minus
Query: 2744 cctccccagacatcatgtcaatgcgtgcaaggtaggaaaccgtatcctgagagaaaatca 2803
||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct: 30790565 cctccccagacatcatgtcgatacgtgcaaggtaggaaaccgtatcctgtgaaaaaatca 30790506
Query: 2804 ctggggcgtattcaacctgcggaggtgcaggctcccgctgcatcgtattcataacccatc 2863
||||||| || ||| |||| ||||| |||| || |||| |||||| ||||||| |||||
Sbjct: 30790505 ctggggcatactcatcctgtggaggcgcagcctgtcgcttcatcgtcttcataatccatc 30790446
Query: 2864 cctgctggctttcaaacatttccctctcatgatggaatacacgctgtgcgaatgccaccc 2923
|||||||| | ||||||||||||||||| |||||||| | |||||| || ||||||| |
Sbjct: 30790445 cctgctggttctcaaacatttccctctcgtgatggaagatacgctgcgcatatgccactc 30790386
Query: 2924 cattgagcagcggtcgctcaaatgatgtccttgccgtgtattttgcaaaggtgtcctg 2981
|||| ||||| || |||||||| ||||||||||||||||| |||||||| || |||||
Sbjct: 30790385 cattcagcagtgggcgctcaaacgatgtccttgccgtgtactttgcaaatgtatcctg 30790328
Score = 224 bits (113), Expect = 2e-055
Identities = 164/181 (90%)
Strand = Plus / Minus
Query: 2978 cctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatgg 3037
||||||||||||| | ||| |||||||||| | ||||||||||||||| ||||||| ||
Sbjct: 30789566 cctggtcgatggcggacgggaacttctcgaaatggaaggtggagatgaggatggcgaggg 30789507
Query: 3038 cgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgc 3097
|||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||
Sbjct: 30789506 cgtggacgtggttgacggtgacgccgaactgctcctgcagcatcctcgcccgctcctcgc 30789447
Query: 3098 acatgctgacgaggcgctcctcggcgcggtccatgctgtcccggcgcagggtccagtgca 3157
||||||||||||| ||||||||||||||||||||| | ||||| |||||| ||||||||
Sbjct: 30789446 acatgctgacgagccgctcctcggcgcggtccatggtctcccgccgcaggtgccagtgca 30789387
Query: 3158 t 3158
|
Sbjct: 30789386 t 30789386
Score = 180 bits (91), Expect = 3e-042
Identities = 148/167 (88%)
Strand = Plus / Minus
Query: 2580 agttgcttccacacgttgctcaactgatgcatcagcagggagatcagggcggtacacagc 2639
||||||||||||||| | |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 30790837 agttgcttccacacgctcctcaactgatgcatcagcagctagaccagggcgatacacagc 30790778
Query: 2640 aaacgtgagaactactcccaagtggtttgatccaagcaaccgaaatgggtttgttaacac 2699
||| ||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||
Sbjct: 30790777 aaaagtgagaactacccccaagtggtttgacccaagcaacctgaatgggtttgtcaacac 30790718
Query: 2700 agctttgccagtagtcctggcccggaaaatgttttctcggtcctcct 2746
||||||||| |||| ||| || || || |||||||| ||||||||||
Sbjct: 30790717 agctttgccggtagcccttgcacgtaagatgttttcccggtcctcct 30790671
Score = 145 bits (73), Expect = 2e-031
Identities = 100/109 (91%)
Strand = Plus / Minus
Query: 2467 gaagcatttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctc 2526
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||
Sbjct: 30791546 gaagcatttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactc 30791487
Query: 2527 aacaaattctccacaagtgactccacatcaaaggctccaccgagatatc 2575
| |||||| ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 30791486 agcaaattttccacgagtgactccacatcaaaagctccaccaagatatc 30791438
Score = 143 bits (72), Expect = 7e-031
Identities = 132/152 (86%)
Strand = Plus / Minus
Query: 347 tcgttcccactaccaatctggagactgcttggtatagctgctcctcgtcgaagggtttag 406
|||||||||| || ||||||||||| |||||||||| ||||||||||||||| ||||| |
Sbjct: 30794671 tcgttcccaccactaatctggagacagcttggtataactgctcctcgtcgaaaggtttgg 30794612
Query: 407 atacgtatccatccattcccgattttatgcactcttcgtaagttgcctggataacatcgg 466
| || || |||||||||||||||||||| || ||||| || || ||||| || ||||| |
Sbjct: 30794611 acacataaccatccattcccgattttatacattcttcatatgtcgcctgaatgacatccg 30794552
Query: 467 ctgtcattgccagaacaggcagatggtactcg 498
| ||||||||||||||||||| |||| |||||
Sbjct: 30794551 cggtcattgccagaacaggcaaatgggactcg 30794520
Score = 129 bits (65), Expect = 1e-026
Identities = 152/181 (83%)
Strand = Plus / Minus
Query: 2179 gcaacatcagcagcttctgcctgcgtttttagctcttccatctttctgcaatcttcagta 2238
||||||||||||||||| || || ||||| ||||||||||||||||| ||||| || | |
Sbjct: 30791915 gcaacatcagcagcttccgcttgagttttgagctcttccatctttctacaatcctctgaa 30791856
Query: 2239 actttgtcatatcgagaatatgcagcagcaatgctatacccaagaagcatccatatgaca 2298
||||| ||||| ||||| |||| ||| ||| ||||||| | |||||||||||| |||
Sbjct: 30791855 actttatcatagcgagaccatgcggcacaaattatataccccacaagcatccatataaca 30791796
Query: 2299 aatgtgcccaaaggattggttatggcagaccacggcataggaagcttttgtctatacctg 2358
|| || ||||||||||| || || |||||||| |||| |||| ||||||| |||||||||
Sbjct: 30791795 aaagttcccaaaggattagtgatagcagaccatggcagaggaggcttttgcctatacctg 30791736
Query: 2359 c 2359
|
Sbjct: 30791735 c 30791735
Score = 105 bits (53), Expect = 2e-019
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 1788 tttgactgcattcccgaccaaatttgtcagtatctgtcgaaacctccaaggatctccaat 1847
|||||||||||| || ||||||||||||||||| |||||| | ||||| |||||||||||
Sbjct: 30792542 tttgactgcatttcccaccaaatttgtcagtatttgtcgatatctccatggatctccaat 30792483
Query: 1848 aacaaccttcggaacattgtcacatacaaatacggcaagct 1888
|||||| || ||||||| ||||||||||| || |||||||
Sbjct: 30792482 aacaacttttggaacatcatcacatacaaacactgcaagct 30792442
Score = 79.8 bits (40), Expect = 9e-012
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 2116 ccaaggacgccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 30792063 ccaaggacgccattcataggtgttctgatctcatgggatacagttgccagaaactg 30792008
Score = 77.8 bits (39), Expect = 3e-011
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 534 cttcctttcctcgttcgctttcaactccatttgccttatttgtccggttgcctcaaacc 592
||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||
Sbjct: 30794487 cttcctttcctcgtttgcttttacctccatttgccttatttgtctagttgcctcaaacc 30794429
Score = 61.9 bits (31), Expect = 2e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 1017 atctgtctcaggcctccagaagtcactctcaataaaaag 1055
|||||||||||||||||||| ||||||||| ||||||||
Sbjct: 30793812 atctgtctcaggcctccagatgtcactctctataaaaag 30793774
Score = 52.0 bits (26), Expect = 0.002
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3286 tcctcctcctctttctcttcctcctt 3311
||||||||||||||||||||||||||
Sbjct: 19615448 tcctcctcctctttctcttcctcctt 19615473
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 394 bits (199), Expect = e-106
Identities = 544/659 (82%)
Strand = Plus / Minus
Query: 1129 ttcacaacttgaagaagtattcccaacctcttgaggtgatatcttgtaacagcactacgt 1188
|||||||||| || || |||||||||||| || |||||||||| ||| ||||| | ||||
Sbjct: 30846235 ttcacaactttaacaactattcccaacctgttaaggtgatatcgtgtgacagctccacgt 30846176
Query: 1189 acaggtctcccatctaccaagatggccttcattcccttaaaagcagttggtagtgcctct 1248
||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||
Sbjct: 30846175 acaggtctcccatctactaaaatagccttcattcccttaaaggcagttggtagtgcctca 30846116
Query: 1249 gtcaagctcctacttgaatcacccgaaatatctttgtatgagtgcttcagtgtggctgag 1308
| |||||||| ||||||||| ||| |||||||| ||||| |||| || ||||||
Sbjct: 30846115 gataagctcctctttgaatcacttgaagtatctttgcatgagcgcttgaggacagctgag 30846056
Query: 1309 aaagtgaacgtgcttccaacagaaggatggctggtgaaacttatctgcccacccataagt 1368
|| || || || || |||||| | ||| |||| ||||||||||| || || |||||||||
Sbjct: 30846055 aatgtaaatgtactcccaacaaatggacggctagtgaaacttatttgaccgcccataagt 30845996
Query: 1369 tcagctagacacttgctgatgcttaaaccgatgccagtaccaccataattccttgaagtt 1428
||||||| ||| ||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 30845995 tcagctaaacatttgctgatgcttaaaccaatgccagttccaccatagttccttgaagtt 30845936
Query: 1429 gaactgtcagcctgcataaacggtgtaaaaacacgatcttgtgcttgcagtggtatcccg 1488
||||| ||||||||||| || || |||||||||||||||||||| || | ||| |||||
Sbjct: 30845935 gaactatcagcctgcatgaaaggcgtaaaaacacgatcttgtgcatgtaatgggatccca 30845876
Query: 1489 acacctgtgtcctcaatacttattgctagtgtgacacgatctgaatcactttgattagag 1548
|||||||| |||||||||||||| | || |||| || ||||| |||||| |||
Sbjct: 30845875 acacctgtatcctcaatacttatcatcaaggtcacacagtcacaatcattttgataagat 30845816
Query: 1549 ttttcgccctcaagatcatccaaaagcgactccttatcagagaggagcagtttaaaatat 1608
| |||| |||||| ||||||| | | | ||| |||||||| || ||||| ||||||||
Sbjct: 30845815 ctgtcgcactcaagctcatccatatggggctctttatcagatagcagcagcttaaaataa 30845756
Query: 1609 tgccaactatttcgtctgtctgctgcttcaaacccactcaaagtattgaaggcaccatta 1668
| ||| |||| || ||||| |||| ||| |||||||||||||||||||| ||||||
Sbjct: 30845755 tcccagttattgcgctcatctgcggcttgaaaaccactcaaagtattgaaggcgccatta 30845696
Query: 1669 gctgttgactcaactctaccacctttgccattcatggctccatgtaggacctgattggct 1728
||||| | ||||||| | || |||| |||||||||| ||||| ||||| ||||| |||
Sbjct: 30845695 gctgtagtctcaactttgccgtctttcccattcatggttccattaaggacttgattagct 30845636
Query: 1729 tccatatttgagttttcagccaaacacacccgcacaaatacatgacctcgttctgtgaa 1787
|||| |||||||| ||||||| || || |||||||||||||| || |||||||||||
Sbjct: 30845635 tccacttttgagttctcagccaggcagactcgcacaaatacatggccccgttctgtgaa 30845577
Score = 274 bits (138), Expect = 3e-070
Identities = 309/366 (84%)
Strand = Plus / Minus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatcgaagcgatgcgggggtt 649
|||| ||||||||||||||||||||||||||||| |||||||| |||| || || |||
Sbjct: 30847100 acccatccatctctggcatctgaacatccataaagcatgcatcaaagcagtgtggttgtt 30847041
Query: 650 gaagtagactgatagcatccttgccgctttcaacacagctaacattagcaccatatttct 709
|||||| || ||||| ||||||||||||||||| ||| || |||||||||||||
Sbjct: 30847040 gaagtaaggagactgcatctttgccgctttcaacacaatgaactttggcaccatatttct 30846981
Query: 710 tgagtgcagccgcagcaactctgaggttgactttattatcgtctacgaccaatatattct 769
|||| ||||| |||||||| ||||| |||||||||||||| ||||| | |||||||||||
Sbjct: 30846980 tgagcgcagctgcagcaaccctgagattgactttattatcatctacaatcaatatattct 30846921
Query: 770 tcccaaccagcaagcttcgaagaaacgacggccggttttgattatcttttctttcggcta 829
|||||| ||||||||| || ||||| || |||| |||||||| ||||| ||||| | |
Sbjct: 30846920 tcccaatcagcaagctgcggagaaatgagggcctattttgattgtctttcctttcaggca 30846861
Query: 830 tctctactttgagcagttgttgaatagatgaagcgattgtgcttgcccttataggcttac 889
|| ||||||| |||| ||||||| | ||||| |||||||||||||||||||| |||
Sbjct: 30846860 tcactacttttagcaactgttgaaggcaagaagcaattgtgcttgcccttataggtttat 30846801
Query: 890 acatcacaatatcaaatatggatccatatttgtccttgtcggcttcagaggtgaccaaaa 949
||||||||||||||||| |||||||||| |||||||||| ||||| || || |||||||
Sbjct: 30846800 acatcacaatatcaaatgcggatccatatctgtccttgtcagcttctgatgttaccaaaa 30846741
Query: 950 gaacta 955
||||||
Sbjct: 30846740 gaacta 30846735
Score = 226 bits (114), Expect = 6e-056
Identities = 207/238 (86%)
Strand = Plus / Minus
Query: 2744 cctccccagacatcatgtcaatgcgtgcaaggtaggaaaccgtatcctgagagaaaatca 2803
||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct: 30843301 cctccccagacatcatgtcgatacgtgcaaggtaggaaaccgtatcctgtgaaaaaatca 30843242
Query: 2804 ctggggcgtattcaacctgcggaggtgcaggctcccgctgcatcgtattcataacccatc 2863
||||||| || ||| |||| ||||| |||| || |||| |||||| ||||||| |||||
Sbjct: 30843241 ctggggcatactcatcctgtggaggcgcagcctgtcgcttcatcgtcttcataatccatc 30843182
Query: 2864 cctgctggctttcaaacatttccctctcatgatggaatacacgctgtgcgaatgccaccc 2923
|||||||| | ||||||||||||||||| |||||||| | |||||| || ||||||| |
Sbjct: 30843181 cctgctggttctcaaacatttccctctcgtgatggaagatacgctgcgcatatgccactc 30843122
Query: 2924 cattgagcagcggtcgctcaaatgatgtccttgccgtgtattttgcaaaggtgtcctg 2981
|||| ||||| || |||||||| ||||||||||||||||| |||||||| || |||||
Sbjct: 30843121 cattcagcagtgggcgctcaaacgatgtccttgccgtgtactttgcaaatgtatcctg 30843064
Score = 224 bits (113), Expect = 2e-055
Identities = 164/181 (90%)
Strand = Plus / Minus
Query: 2978 cctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatgg 3037
||||||||||||| | ||| |||||||||| | ||||||||||||||| ||||||| ||
Sbjct: 30842302 cctggtcgatggcggacgggaacttctcgaaatggaaggtggagatgaggatggcgaggg 30842243
Query: 3038 cgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgc 3097
|||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||
Sbjct: 30842242 cgtggacgtggttgacggtgacgccgaactgctcctgcagcatcctcgcccgctcctcgc 30842183
Query: 3098 acatgctgacgaggcgctcctcggcgcggtccatgctgtcccggcgcagggtccagtgca 3157
||||||||||||| ||||||||||||||||||||| | ||||| |||||| ||||||||
Sbjct: 30842182 acatgctgacgagccgctcctcggcgcggtccatggtctcccgccgcaggtgccagtgca 30842123
Query: 3158 t 3158
|
Sbjct: 30842122 t 30842122
Score = 204 bits (103), Expect = 2e-049
Identities = 199/231 (86%)
Strand = Plus / Minus
Query: 1887 ctcaatgcacttctcccgtgactttgaagaaaacaaggaaacaacatcatccatgagaga 1946
||||||||||||||| | ||| ||||||||||| ||||| | |||||||||||||||||
Sbjct: 30845108 ctcaatgcacttctctcttgattttgaagaaaataaggagatcacatcatccatgagaga 30845049
Query: 1947 acgcaggtcaaaaggcaccgcttcaagctctaactttccagcctcaatctttgctcgatc 2006
||||||||||| ||||| || |||||||| || || || || |||||||| || |||||
Sbjct: 30845048 ccgcaggtcaaatggcactgcctcaagctccaatttccctgcttcaatcttagcccgatc 30844989
Query: 2007 aaggacatcatttatcagtgtaatcaatgctctgccacacatttgagcagtttgagcata 2066
||| ||||||||||||||||| |||||||||||||||||||| || || || ||||||||
Sbjct: 30844988 aagtacatcatttatcagtgttatcaatgctctgccacacatctgggctgtctgagcata 30844929
Query: 2067 atccttctgtgtcatagttagatctgttcctaaaagcatatccagcattcc 2117
||||||||| |||||| | |||||||| || || ||||| || ||||||||
Sbjct: 30844928 atccttctgagtcatactcagatctgtccccaagagcatgtcgagcattcc 30844878
Score = 180 bits (91), Expect = 3e-042
Identities = 148/167 (88%)
Strand = Plus / Minus
Query: 2580 agttgcttccacacgttgctcaactgatgcatcagcagggagatcagggcggtacacagc 2639
||||||||||||||| | |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 30843573 agttgcttccacacgctcctcaactgatgcatcagcagctagaccagggcgatacacagc 30843514
Query: 2640 aaacgtgagaactactcccaagtggtttgatccaagcaaccgaaatgggtttgttaacac 2699
||| ||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||
Sbjct: 30843513 aaaagtgagaactacccccaagtggtttgacccaagcaacctgaatgggtttgtcaacac 30843454
Query: 2700 agctttgccagtagtcctggcccggaaaatgttttctcggtcctcct 2746
||||||||| |||| ||| || || || |||||||| ||||||||||
Sbjct: 30843453 agctttgccggtagcccttgcacgtaagatgttttcccggtcctcct 30843407
Score = 145 bits (73), Expect = 2e-031
Identities = 100/109 (91%)
Strand = Plus / Minus
Query: 2467 gaagcatttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctc 2526
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||
Sbjct: 30844282 gaagcatttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactc 30844223
Query: 2527 aacaaattctccacaagtgactccacatcaaaggctccaccgagatatc 2575
| |||||| ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 30844222 agcaaattttccacgagtgactccacatcaaaagctccaccaagatatc 30844174
Score = 143 bits (72), Expect = 7e-031
Identities = 132/152 (86%)
Strand = Plus / Minus
Query: 347 tcgttcccactaccaatctggagactgcttggtatagctgctcctcgtcgaagggtttag 406
|||||||||| || ||||||||||| |||||||||| ||||||||||||||| ||||| |
Sbjct: 30847529 tcgttcccaccactaatctggagacagcttggtataactgctcctcgtcgaaaggtttgg 30847470
Query: 407 atacgtatccatccattcccgattttatgcactcttcgtaagttgcctggataacatcgg 466
| || || |||||||||||||||||||| || ||||| || || ||||| || ||||| |
Sbjct: 30847469 acacataaccatccattcccgattttatacattcttcatatgtcgcctgaatgacatccg 30847410
Query: 467 ctgtcattgccagaacaggcagatggtactcg 498
| ||||||||||||||||||| |||| |||||
Sbjct: 30847409 cggtcattgccagaacaggcaaatgggactcg 30847378
Score = 129 bits (65), Expect = 1e-026
Identities = 152/181 (83%)
Strand = Plus / Minus
Query: 2179 gcaacatcagcagcttctgcctgcgtttttagctcttccatctttctgcaatcttcagta 2238
||||||||||||||||| || || ||||| ||||||||||||||||| ||||| || | |
Sbjct: 30844651 gcaacatcagcagcttccgcttgagttttgagctcttccatctttctacaatcctctgaa 30844592
Query: 2239 actttgtcatatcgagaatatgcagcagcaatgctatacccaagaagcatccatatgaca 2298
||||| ||||| ||||| |||| ||| ||| ||||||| | |||||||||||| |||
Sbjct: 30844591 actttatcatagcgagaccatgcggcacaaattatataccccacaagcatccatataaca 30844532
Query: 2299 aatgtgcccaaaggattggttatggcagaccacggcataggaagcttttgtctatacctg 2358
|| || ||||||||||| || || |||||||| |||| |||| ||||||| |||||||||
Sbjct: 30844531 aaagttcccaaaggattagtgatagcagaccatggcagaggaggcttttgcctatacctg 30844472
Query: 2359 c 2359
|
Sbjct: 30844471 c 30844471
Score = 105 bits (53), Expect = 2e-019
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 1788 tttgactgcattcccgaccaaatttgtcagtatctgtcgaaacctccaaggatctccaat 1847
|||||||||||| || ||||||||||||||||| |||||| | ||||| |||||||||||
Sbjct: 30845400 tttgactgcatttcccaccaaatttgtcagtatttgtcgatatctccatggatctccaat 30845341
Query: 1848 aacaaccttcggaacattgtcacatacaaatacggcaagct 1888
|||||| || ||||||| ||||||||||| || |||||||
Sbjct: 30845340 aacaacttttggaacatcatcacatacaaacactgcaagct 30845300
Score = 79.8 bits (40), Expect = 9e-012
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 2116 ccaaggacgccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 30844799 ccaaggacgccattcataggtgttctgatctcatgggatacagttgccagaaactg 30844744
Score = 77.8 bits (39), Expect = 3e-011
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 534 cttcctttcctcgttcgctttcaactccatttgccttatttgtccggttgcctcaaacc 592
||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||
Sbjct: 30847345 cttcctttcctcgtttgcttttacctccatttgccttatttgtctagttgcctcaaacc 30847287
Score = 61.9 bits (31), Expect = 2e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 1017 atctgtctcaggcctccagaagtcactctcaataaaaag 1055
|||||||||||||||||||| ||||||||| ||||||||
Sbjct: 30846670 atctgtctcaggcctccagatgtcactctctataaaaag 30846632
>gb|CV152516.1|CV152516 LS71-S.SEQ Cold stressed rice cDNA library Oryza sativa (japonica
cultivar-group) cDNA, mRNA sequence
Length = 637
Score = 313 bits (158), Expect = 3e-082
Identities = 326/383 (85%)
Strand = Plus / Minus
Query: 1129 ttcacaacttgaagaagtattcccaacctcttgaggtgatatcttgtaacagcactacgt 1188
|||||||||| || | |||||||||||| || |||||||||| ||| ||||| | ||||
Sbjct: 508 ttcacaacttnaacanctattcccaacctgttaaggtgatatcgtgtgacagctccacgt 449
Query: 1189 acaggtctcccatctaccaagatggccttcattcccttaaaagcagttggtagtgcctct 1248
||||||||||||||||| | || ||||||||||||||||| |||||||||||||||||
Sbjct: 448 acaggtctcccatctactataatagccttcattcccttaaaggcagttggtagtgcctca 389
Query: 1249 gtcaagctcctacttgaatcacccgaaatatctttgtatgagtgcttcagtgtggctgag 1308
| |||||||| ||||||||| ||| |||||||| ||||| |||| || ||||||
Sbjct: 388 gataagctcctctttgaatcacttgaagtatctttgcatgagcgcttgaggncagctgag 329
Query: 1309 aaagtgaacgtgcttccaacagaaggatggctggtgaaacttatctgcccacccataagt 1368
|| || || || || |||||| | ||| |||| ||||||||||| || || |||||||||
Sbjct: 328 aatgtaaatgtactcccaacaaatggacggctagtgaaacttatttgaccgcccataagt 269
Query: 1369 tcagctagacacttgctgatgcttaaaccgatgccagtaccaccataattccttgaagtt 1428
||||||| ||| ||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 268 tcagctaaacatttgctgatgcttaaaccaatgccagttccaccatagttccttgaagtt 209
Query: 1429 gaactgtcagcctgcataaacggtgtaaaaacacgatcttgtgcttgcagtggtatcccg 1488
||||| ||||||||||| || || |||||||||||||||||||| || | ||| |||||
Sbjct: 208 gaactatcagcctgcatgaaaggcgtaaaaacacgatcttgtgcatgtaatgggatccct 149
Query: 1489 acacctgtgtcctcaatacttat 1511
|||||||| ||||||||||||||
Sbjct: 148 acacctgtatcctcaatacttat 126
Score = 56.0 bits (28), Expect = 1e-004
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1017 atctgtctcaggcctccagaagtcactctcaataaa 1052
|||||||||||||||||||| ||||||||| |||||
Sbjct: 619 atctgtctcaggcctccagatgtcactctctataaa 584
>gb|AACV01005368.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005368, whole
genome shotgun sequence
Length = 22440
Score = 226 bits (114), Expect = 6e-056
Identities = 207/238 (86%)
Strand = Plus / Plus
Query: 2744 cctccccagacatcatgtcaatgcgtgcaaggtaggaaaccgtatcctgagagaaaatca 2803
||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct: 1561 cctccccagacatcatgtcgatacgtgcaaggtaggaaaccgtatcctgtgaaaaaatca 1620
Query: 2804 ctggggcgtattcaacctgcggaggtgcaggctcccgctgcatcgtattcataacccatc 2863
||||||| || ||| |||| ||||| |||| || |||| |||||| ||||||| |||||
Sbjct: 1621 ctggggcatactcatcctgtggaggcgcagcctgtcgcttcatcgtcttcataatccatc 1680
Query: 2864 cctgctggctttcaaacatttccctctcatgatggaatacacgctgtgcgaatgccaccc 2923
|||||||| | ||||||||||||||||| |||||||| | |||||| || ||||||| |
Sbjct: 1681 cctgctggttctcaaacatttccctctcgtgatggaagatacgctgcgcatatgccactc 1740
Query: 2924 cattgagcagcggtcgctcaaatgatgtccttgccgtgtattttgcaaaggtgtcctg 2981
|||| ||||| || |||||||| ||||||||||||||||| |||||||| || |||||
Sbjct: 1741 cattcagcagtgggcgctcaaacgatgtccttgccgtgtactttgcaaatgtatcctg 1798
Score = 224 bits (113), Expect = 2e-055
Identities = 164/181 (90%)
Strand = Plus / Plus
Query: 2978 cctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatgg 3037
||||||||||||| | ||| |||||||||| | ||||||||||||||| ||||||| ||
Sbjct: 2560 cctggtcgatggcggacgggaacttctcgaaatggaaggtggagatgaggatggcgaggg 2619
Query: 3038 cgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgc 3097
|||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||
Sbjct: 2620 cgtggacgtggttgacggtgacgccgaactgctcctgcagcatcctcgcccgctcctcgc 2679
Query: 3098 acatgctgacgaggcgctcctcggcgcggtccatgctgtcccggcgcagggtccagtgca 3157
||||||||||||| ||||||||||||||||||||| | ||||| |||||| ||||||||
Sbjct: 2680 acatgctgacgagccgctcctcggcgcggtccatggtctcccgccgcaggtgccagtgca 2739
Query: 3158 t 3158
|
Sbjct: 2740 t 2740
Score = 180 bits (91), Expect = 3e-042
Identities = 148/167 (88%)
Strand = Plus / Plus
Query: 2580 agttgcttccacacgttgctcaactgatgcatcagcagggagatcagggcggtacacagc 2639
||||||||||||||| | |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 1289 agttgcttccacacgctcctcaactgatgcatcagcagctagaccagggcgatacacagc 1348
Query: 2640 aaacgtgagaactactcccaagtggtttgatccaagcaaccgaaatgggtttgttaacac 2699
||| ||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||
Sbjct: 1349 aaaagtgagaactacccccaagtggtttgacccaagcaacctgaatgggtttgtcaacac 1408
Query: 2700 agctttgccagtagtcctggcccggaaaatgttttctcggtcctcct 2746
||||||||| |||| ||| || || || |||||||| ||||||||||
Sbjct: 1409 agctttgccggtagcccttgcacgtaagatgttttcccggtcctcct 1455
Score = 145 bits (73), Expect = 2e-031
Identities = 100/109 (91%)
Strand = Plus / Plus
Query: 2467 gaagcatttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctc 2526
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||
Sbjct: 580 gaagcatttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactc 639
Query: 2527 aacaaattctccacaagtgactccacatcaaaggctccaccgagatatc 2575
| |||||| ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 640 agcaaattttccacgagtgactccacatcaaaagctccaccaagatatc 688
Score = 129 bits (65), Expect = 1e-026
Identities = 152/181 (83%)
Strand = Plus / Plus
Query: 2179 gcaacatcagcagcttctgcctgcgtttttagctcttccatctttctgcaatcttcagta 2238
||||||||||||||||| || || ||||| ||||||||||||||||| ||||| || | |
Sbjct: 211 gcaacatcagcagcttccgcttgagttttgagctcttccatctttctacaatcctctgaa 270
Query: 2239 actttgtcatatcgagaatatgcagcagcaatgctatacccaagaagcatccatatgaca 2298
||||| ||||| ||||| |||| ||| ||| ||||||| | |||||||||||| |||
Sbjct: 271 actttatcatagcgagaccatgcggcacaaattatataccccacaagcatccatataaca 330
Query: 2299 aatgtgcccaaaggattggttatggcagaccacggcataggaagcttttgtctatacctg 2358
|| || ||||||||||| || || |||||||| |||| |||| ||||||| |||||||||
Sbjct: 331 aaagttcccaaaggattagtgatagcagaccatggcagaggaggcttttgcctatacctg 390
Query: 2359 c 2359
|
Sbjct: 391 c 391
Score = 79.8 bits (40), Expect = 9e-012
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 2116 ccaaggacgccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 63 ccaaggacgccattcataggtgttctgatctcatgggatacagttgccagaaactg 118
>ref|XM_469566.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3042
Score = 121 bits (61), Expect = 3e-024
Identities = 127/149 (85%)
Strand = Plus / Minus
Query: 2974 gtgtcctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcg 3033
||||||||||||| ||| |||||| ||| ||| ||| |||||||| || ||| ||||||
Sbjct: 353 gtgtcctggtcgagggcgggagggtgcttgtcgtagtggaaggtggcgacgaggatggcg 294
Query: 3034 atggcgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcc 3093
| |||||||||||||||||||| ||| ||||||| ||||||||||| | ||| | ||||
Sbjct: 293 agggcgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcgcgctcc 234
Query: 3094 tcgcacatgctgacgaggcgctcctcggc 3122
|||||||||| ||||||| |||||||||
Sbjct: 233 tcgcacatgcagacgagggcctcctcggc 205
Score = 111 bits (56), Expect = 3e-021
Identities = 113/132 (85%)
Strand = Plus / Minus
Query: 2103 catatccagcattccaaggacgccattcataggtgttctgatctcatgtgacgcagttgc 2162
|||||| |||||||| || ||||||||||| ||||||||||||||||| || |||||||
Sbjct: 1221 catatcaagcattcccagcacgccattcatgggtgttctgatctcatgagaaacagttgc 1162
Query: 2163 caggaactgagattttgcaacatcagcagcttctgcctgcgtttttagctcttccatctt 2222
|||||||||||||| |||| |||||| ||||||||| | |||| ||| ||||||| ||
Sbjct: 1161 aaggaactgagatttagcaatatcagccgcttctgcccgttttttcagcgcttccatttt 1102
Query: 2223 tctgcaatcttc 2234
| |||||||||
Sbjct: 1101 ccggcaatcttc 1090
Score = 81.8 bits (41), Expect = 2e-012
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 1349 ttatctgcccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtac 1408
||||||| |||||||| | |||| | ||||| ||||||||||| || || |||||||| |
Sbjct: 1990 ttatctgaccacccattatttcaacaagacatttgctgatgctcaatccaatgccagttc 1931
Query: 1409 caccataattccttgaagttgaactgtcagcctgcat 1445
||||||| ||||| |||||||| |||||||| |||||
Sbjct: 1930 caccatagttcctagaagttgagctgtcagcttgcat 1894
Score = 56.0 bits (28), Expect = 1e-004
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||| ||||| | ||||| || ||||| | | |||||||||
Sbjct: 851 tttgtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaa 792
Query: 2533 ttctccacaagtgactccacatcaaaggctcc 2564
|| || || ||||||||||||||||| |||||
Sbjct: 791 ttttctactagtgactccacatcaaatgctcc 760
Score = 44.1 bits (22), Expect = 0.49
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 580 gttgcctcaaacccgtccatctctggcatctgaa 613
||||||||||| || |||||||| ||||||||||
Sbjct: 2795 gttgcctcaaatccatccatctccggcatctgaa 2762
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
sequence
Length = 147344
Score = 113 bits (57), Expect = 6e-022
Identities = 123/145 (84%)
Strand = Plus / Minus
Query: 2978 cctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatgg 3037
||||||||| ||| |||||| ||| ||| ||| |||||||| || ||| ||||||| ||
Sbjct: 64930 cctggtcgagggcgggagggtgcttgtcgtagtggaaggtggcgacgaggatggcgaggg 64871
Query: 3038 cgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgc 3097
|||||||||||||||||| ||| ||||||| ||||||||||| | ||| | ||||||||
Sbjct: 64870 cgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcgcgctcctcgc 64811
Query: 3098 acatgctgacgaggcgctcctcggc 3122
|||||| ||||||| |||||||||
Sbjct: 64810 acatgcagacgagggcctcctcggc 64786
Score = 81.8 bits (41), Expect = 2e-012
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 1349 ttatctgcccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtac 1408
||||||| |||||||| | |||| | ||||| ||||||||||| || || |||||||| |
Sbjct: 67945 ttatctgaccacccattatttcaacaagacatttgctgatgctcaatccaatgccagttc 67886
Query: 1409 caccataattccttgaagttgaactgtcagcctgcat 1445
||||||| ||||| |||||||| |||||||| |||||
Sbjct: 67885 caccatagttcctagaagttgagctgtcagcttgcat 67849
Score = 60.0 bits (30), Expect = 8e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 2122 acgccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
||||||||||| ||||||||||||||||| || ||||||| ||||||||
Sbjct: 66715 acgccattcatgggtgttctgatctcatgagaaacagttgcaaggaactg 66666
Score = 56.0 bits (28), Expect = 1e-004
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||| ||||| | ||||| || ||||| | | |||||||||
Sbjct: 66191 tttgtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaa 66132
Query: 2533 ttctccacaagtgactccacatcaaaggctcc 2564
|| || || ||||||||||||||||| |||||
Sbjct: 66131 ttttctactagtgactccacatcaaatgctcc 66100
>gb|AACV01007799.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007799, whole
genome shotgun sequence
Length = 57179
Score = 113 bits (57), Expect = 6e-022
Identities = 123/145 (84%)
Strand = Plus / Minus
Query: 2978 cctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatgg 3037
||||||||| ||| |||||| ||| ||| ||| |||||||| || ||| ||||||| ||
Sbjct: 50030 cctggtcgagggcgggagggtgcttgtcgtagtggaaggtggcgacgaggatggcgaggg 49971
Query: 3038 cgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgc 3097
|||||||||||||||||| ||| ||||||| ||||||||||| | ||| | ||||||||
Sbjct: 49970 cgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcgcgctcctcgc 49911
Query: 3098 acatgctgacgaggcgctcctcggc 3122
|||||| ||||||| |||||||||
Sbjct: 49910 acatgcagacgagggcctcctcggc 49886
Score = 81.8 bits (41), Expect = 2e-012
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 1349 ttatctgcccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtac 1408
||||||| |||||||| | |||| | ||||| ||||||||||| || || |||||||| |
Sbjct: 53046 ttatctgaccacccattatttcaacaagacatttgctgatgctcaatccaatgccagttc 52987
Query: 1409 caccataattccttgaagttgaactgtcagcctgcat 1445
||||||| ||||| |||||||| |||||||| |||||
Sbjct: 52986 caccatagttcctagaagttgagctgtcagcttgcat 52950
Score = 60.0 bits (30), Expect = 8e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 2122 acgccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
||||||||||| ||||||||||||||||| || ||||||| ||||||||
Sbjct: 51815 acgccattcatgggtgttctgatctcatgagaaacagttgcaaggaactg 51766
Score = 56.0 bits (28), Expect = 1e-004
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||| ||||| | ||||| || ||||| | | |||||||||
Sbjct: 51291 tttgtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaa 51232
Query: 2533 ttctccacaagtgactccacatcaaaggctcc 2564
|| || || ||||||||||||||||| |||||
Sbjct: 51231 ttttctactagtgactccacatcaaatgctcc 51200
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 113 bits (57), Expect = 6e-022
Identities = 123/145 (84%)
Strand = Plus / Minus
Query: 2978 cctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatgg 3037
||||||||| ||| |||||| ||| ||| ||| |||||||| || ||| ||||||| ||
Sbjct: 2063016 cctggtcgagggcgggagggtgcttgtcgtagtggaaggtggcgacgaggatggcgaggg 2062957
Query: 3038 cgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgc 3097
|||||||||||||||||| ||| ||||||| ||||||||||| | ||| | ||||||||
Sbjct: 2062956 cgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcgcgctcctcgc 2062897
Query: 3098 acatgctgacgaggcgctcctcggc 3122
|||||| ||||||| |||||||||
Sbjct: 2062896 acatgcagacgagggcctcctcggc 2062872
Score = 81.8 bits (41), Expect = 2e-012
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 1349 ttatctgcccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtac 1408
||||||| |||||||| | |||| | ||||| ||||||||||| || || |||||||| |
Sbjct: 2066031 ttatctgaccacccattatttcaacaagacatttgctgatgctcaatccaatgccagttc 2065972
Query: 1409 caccataattccttgaagttgaactgtcagcctgcat 1445
||||||| ||||| |||||||| |||||||| |||||
Sbjct: 2065971 caccatagttcctagaagttgagctgtcagcttgcat 2065935
Score = 60.0 bits (30), Expect = 8e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 2122 acgccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
||||||||||| ||||||||||||||||| || ||||||| ||||||||
Sbjct: 2064801 acgccattcatgggtgttctgatctcatgagaaacagttgcaaggaactg 2064752
Score = 56.0 bits (28), Expect = 1e-004
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||| ||||| | ||||| || ||||| | | |||||||||
Sbjct: 2064277 tttgtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaa 2064218
Query: 2533 ttctccacaagtgactccacatcaaaggctcc 2564
|| || || ||||||||||||||||| |||||
Sbjct: 2064217 ttttctactagtgactccacatcaaatgctcc 2064186
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 113 bits (57), Expect = 6e-022
Identities = 123/145 (84%)
Strand = Plus / Minus
Query: 2978 cctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatgg 3037
||||||||| ||| |||||| ||| ||| ||| |||||||| || ||| ||||||| ||
Sbjct: 2547811 cctggtcgagggcgggagggtgcttgtcgtagtggaaggtggcgacgaggatggcgaggg 2547752
Query: 3038 cgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgc 3097
|||||||||||||||||| ||| ||||||| ||||||||||| | ||| | ||||||||
Sbjct: 2547751 cgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcgcgctcctcgc 2547692
Query: 3098 acatgctgacgaggcgctcctcggc 3122
|||||| ||||||| |||||||||
Sbjct: 2547691 acatgcagacgagggcctcctcggc 2547667
Score = 81.8 bits (41), Expect = 2e-012
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 1349 ttatctgcccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtac 1408
||||||| |||||||| | |||| | ||||| ||||||||||| || || |||||||| |
Sbjct: 2550827 ttatctgaccacccattatttcaacaagacatttgctgatgctcaatccaatgccagttc 2550768
Query: 1409 caccataattccttgaagttgaactgtcagcctgcat 1445
||||||| ||||| |||||||| |||||||| |||||
Sbjct: 2550767 caccatagttcctagaagttgagctgtcagcttgcat 2550731
Score = 60.0 bits (30), Expect = 8e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 2122 acgccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
||||||||||| ||||||||||||||||| || ||||||| ||||||||
Sbjct: 2549596 acgccattcatgggtgttctgatctcatgagaaacagttgcaaggaactg 2549547
Score = 56.0 bits (28), Expect = 1e-004
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||| ||||| | ||||| || ||||| | | |||||||||
Sbjct: 2549072 tttgtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaa 2549013
Query: 2533 ttctccacaagtgactccacatcaaaggctcc 2564
|| || || ||||||||||||||||| |||||
Sbjct: 2549012 ttttctactagtgactccacatcaaatgctcc 2548981
Score = 44.1 bits (22), Expect = 0.49
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 4967006 ctcctcctcctcttcctcttcctcct 4966981
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 113 bits (57), Expect = 6e-022
Identities = 123/145 (84%)
Strand = Plus / Minus
Query: 2978 cctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatgg 3037
||||||||| ||| |||||| ||| ||| ||| |||||||| || ||| ||||||| ||
Sbjct: 29813974 cctggtcgagggcgggagggtgcttgtcgtagtggaaggtggcgacgaggatggcgaggg 29813915
Query: 3038 cgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgc 3097
|||||||||||||||||| ||| ||||||| ||||||||||| | ||| | ||||||||
Sbjct: 29813914 cgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcgcgctcctcgc 29813855
Query: 3098 acatgctgacgaggcgctcctcggc 3122
|||||| ||||||| |||||||||
Sbjct: 29813854 acatgcagacgagggcctcctcggc 29813830
Score = 81.8 bits (41), Expect = 2e-012
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 1349 ttatctgcccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtac 1408
||||||| |||||||| | |||| | ||||| ||||||||||| || || |||||||| |
Sbjct: 29816990 ttatctgaccacccattatttcaacaagacatttgctgatgctcaatccaatgccagttc 29816931
Query: 1409 caccataattccttgaagttgaactgtcagcctgcat 1445
||||||| ||||| |||||||| |||||||| |||||
Sbjct: 29816930 caccatagttcctagaagttgagctgtcagcttgcat 29816894
Score = 60.0 bits (30), Expect = 8e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 2122 acgccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
||||||||||| ||||||||||||||||| || ||||||| ||||||||
Sbjct: 29815759 acgccattcatgggtgttctgatctcatgagaaacagttgcaaggaactg 29815710
Score = 56.0 bits (28), Expect = 1e-004
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||| ||||| | ||||| || ||||| | | |||||||||
Sbjct: 29815235 tttgtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaa 29815176
Query: 2533 ttctccacaagtgactccacatcaaaggctcc 2564
|| || || ||||||||||||||||| |||||
Sbjct: 29815175 ttttctactagtgactccacatcaaatgctcc 29815144
Score = 44.1 bits (22), Expect = 0.49
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 32233169 ctcctcctcctcttcctcttcctcct 32233144
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 113 bits (57), Expect = 6e-022
Identities = 123/145 (84%)
Strand = Plus / Minus
Query: 2978 cctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatgg 3037
||||||||| ||| |||||| ||| ||| ||| |||||||| || ||| ||||||| ||
Sbjct: 28849273 cctggtcgagggcgggagggtgcttgtcgtagtggaaggtggcgacgaggatggcgaggg 28849214
Query: 3038 cgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgc 3097
|||||||||||||||||| ||| ||||||| ||||||||||| | ||| | ||||||||
Sbjct: 28849213 cgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcgcgctcctcgc 28849154
Query: 3098 acatgctgacgaggcgctcctcggc 3122
|||||| ||||||| |||||||||
Sbjct: 28849153 acatgcagacgagggcctcctcggc 28849129
Score = 81.8 bits (41), Expect = 2e-012
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 1349 ttatctgcccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtac 1408
||||||| |||||||| | |||| | ||||| ||||||||||| || || |||||||| |
Sbjct: 28852288 ttatctgaccacccattatttcaacaagacatttgctgatgctcaatccaatgccagttc 28852229
Query: 1409 caccataattccttgaagttgaactgtcagcctgcat 1445
||||||| ||||| |||||||| |||||||| |||||
Sbjct: 28852228 caccatagttcctagaagttgagctgtcagcttgcat 28852192
Score = 60.0 bits (30), Expect = 8e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 2122 acgccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
||||||||||| ||||||||||||||||| || ||||||| ||||||||
Sbjct: 28851058 acgccattcatgggtgttctgatctcatgagaaacagttgcaaggaactg 28851009
Score = 56.0 bits (28), Expect = 1e-004
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||| ||||| | ||||| || ||||| | | |||||||||
Sbjct: 28850534 tttgtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaa 28850475
Query: 2533 ttctccacaagtgactccacatcaaaggctcc 2564
|| || || ||||||||||||||||| |||||
Sbjct: 28850474 ttttctactagtgactccacatcaaatgctcc 28850443
Score = 44.1 bits (22), Expect = 0.49
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 31409990 ctcctcctcctcttcctcttcctcct 31409965
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 113 bits (57), Expect = 6e-022
Identities = 123/145 (84%)
Strand = Plus / Minus
Query: 2978 cctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatgg 3037
||||||||| ||| |||||| ||| ||| ||| |||||||| || ||| ||||||| ||
Sbjct: 28757949 cctggtcgagggcgggagggtgcttgtcgtagtggaaggtggcgacgaggatggcgaggg 28757890
Query: 3038 cgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgc 3097
|||||||||||||||||| ||| ||||||| ||||||||||| | ||| | ||||||||
Sbjct: 28757889 cgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcgcgctcctcgc 28757830
Query: 3098 acatgctgacgaggcgctcctcggc 3122
|||||| ||||||| |||||||||
Sbjct: 28757829 acatgcagacgagggcctcctcggc 28757805
Score = 81.8 bits (41), Expect = 2e-012
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 1349 ttatctgcccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtac 1408
||||||| |||||||| | |||| | ||||| ||||||||||| || || |||||||| |
Sbjct: 28760964 ttatctgaccacccattatttcaacaagacatttgctgatgctcaatccaatgccagttc 28760905
Query: 1409 caccataattccttgaagttgaactgtcagcctgcat 1445
||||||| ||||| |||||||| |||||||| |||||
Sbjct: 28760904 caccatagttcctagaagttgagctgtcagcttgcat 28760868
Score = 60.0 bits (30), Expect = 8e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 2122 acgccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
||||||||||| ||||||||||||||||| || ||||||| ||||||||
Sbjct: 28759734 acgccattcatgggtgttctgatctcatgagaaacagttgcaaggaactg 28759685
Score = 56.0 bits (28), Expect = 1e-004
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||| ||||| | ||||| || ||||| | | |||||||||
Sbjct: 28759210 tttgtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaa 28759151
Query: 2533 ttctccacaagtgactccacatcaaaggctcc 2564
|| || || ||||||||||||||||| |||||
Sbjct: 28759150 ttttctactagtgactccacatcaaatgctcc 28759119
Score = 44.1 bits (22), Expect = 0.49
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 31319474 ctcctcctcctcttcctcttcctcct 31319449
>ref|XM_478835.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 486
Score = 89.7 bits (45), Expect = 9e-015
Identities = 123/149 (82%)
Strand = Plus / Minus
Query: 2974 gtgtcctggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcg 3033
||||||||||||| || |||||| ||| ||| ||| |||||| || ||| ||||||
Sbjct: 251 gtgtcctggtcgagcgcgggagggtgcttgtcgtagtggaaggtcacgacgaggatggcg 192
Query: 3034 atggcgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcc 3093
| |||||||||||||||||||| ||| ||||||| ||||||||||| | ||| | ||||
Sbjct: 191 agggcgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcgcgctcc 132
Query: 3094 tcgcacatgctgacgaggcgctcctcggc 3122
||||| |||| ||||||| |||||||||
Sbjct: 131 tcgcaaatgcagacgagggcctcctcggc 103
>dbj|AP004271.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone P0408B10, ***
SEQUENCING IN PROGRESS ***
Length = 142549
Score = 85.7 bits (43), Expect = 1e-013
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 3028 atggcgatggcgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggcc 3087
||||||| |||||||||||||||||||| ||| ||||||| ||||||||||| | |||
Sbjct: 29320 atggcgagggcgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcg 29261
Query: 3088 ctctcctcgcacatgctgacgaggcgctcctcggc 3122
| ||||||||| |||| ||||||| |||||||||
Sbjct: 29260 cgctcctcgcaaatgcagacgagggcctcctcggc 29226
>gb|AACV01016637.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016637, whole
genome shotgun sequence
Length = 37253
Score = 85.7 bits (43), Expect = 1e-013
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 3028 atggcgatggcgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggcc 3087
||||||| |||||||||||||||||||| ||| ||||||| ||||||||||| | |||
Sbjct: 8489 atggcgagggcgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcg 8430
Query: 3088 ctctcctcgcacatgctgacgaggcgctcctcggc 3122
| ||||||||| |||| ||||||| |||||||||
Sbjct: 8429 cgctcctcgcaaatgcagacgagggcctcctcggc 8395
>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1065_B06
Length = 113170
Score = 85.7 bits (43), Expect = 1e-013
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 3028 atggcgatggcgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggcc 3087
||||||| |||||||||||||||||||| ||| ||||||| ||||||||||| | |||
Sbjct: 32329 atggcgagggcgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcg 32388
Query: 3088 ctctcctcgcacatgctgacgaggcgctcctcggc 3122
| ||||||||| |||| ||||||| |||||||||
Sbjct: 32389 cgctcctcgcaaatgcagacgagggcctcctcggc 32423
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 85.7 bits (43), Expect = 1e-013
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 3028 atggcgatggcgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggcc 3087
||||||| |||||||||||||||||||| ||| ||||||| ||||||||||| | |||
Sbjct: 10890076 atggcgagggcgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcg 10890135
Query: 3088 ctctcctcgcacatgctgacgaggcgctcctcggc 3122
| ||||||||| |||| ||||||| |||||||||
Sbjct: 10890136 cgctcctcgcaaatgcagacgagggcctcctcggc 10890170
Score = 44.1 bits (22), Expect = 0.49
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 11458972 ctcctcctcctcttcctcttcctcct 11458997
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 85.7 bits (43), Expect = 1e-013
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 3028 atggcgatggcgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggcc 3087
||||||| |||||||||||||||||||| ||| ||||||| ||||||||||| | |||
Sbjct: 8720759 atggcgagggcgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcg 8720818
Query: 3088 ctctcctcgcacatgctgacgaggcgctcctcggc 3122
| ||||||||| |||| ||||||| |||||||||
Sbjct: 8720819 cgctcctcgcaaatgcagacgagggcctcctcggc 8720853
Score = 44.1 bits (22), Expect = 0.49
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 9310304 ctcctcctcctcttcctcttcctcct 9310329
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 85.7 bits (43), Expect = 1e-013
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 3028 atggcgatggcgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggcc 3087
||||||| |||||||||||||||||||| ||| ||||||| ||||||||||| | |||
Sbjct: 22120198 atggcgagggcgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcg 22120257
Query: 3088 ctctcctcgcacatgctgacgaggcgctcctcggc 3122
| ||||||||| |||| ||||||| |||||||||
Sbjct: 22120258 cgctcctcgcaaatgcagacgagggcctcctcggc 22120292
Score = 44.1 bits (22), Expect = 0.49
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 22709743 ctcctcctcctcttcctcttcctcct 22709768
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 85.7 bits (43), Expect = 1e-013
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 3028 atggcgatggcgtggacgtggttgacggtgaccccgaactgctcctgcagcatcctggcc 3087
||||||| |||||||||||||||||||| ||| ||||||| ||||||||||| | |||
Sbjct: 23277071 atggcgagggcgtggacgtggttgacggagacggcgaactggtcctgcagcatgcgggcg 23277130
Query: 3088 ctctcctcgcacatgctgacgaggcgctcctcggc 3122
| ||||||||| |||| ||||||| |||||||||
Sbjct: 23277131 cgctcctcgcaaatgcagacgagggcctcctcggc 23277165
Score = 44.1 bits (22), Expect = 0.49
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 23845967 ctcctcctcctcttcctcttcctcct 23845992
>gb|D47151.1|D47151 RICS12303A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 439
Score = 69.9 bits (35), Expect = 9e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 586 tcaaacccgtccatctctggcatctgaacatccataaaacatgcatc 632
|||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 141 tcaaacccatccatctcaggcatctgaacatccataaaacaagcatc 95
>gb|CB676673.1|CB676673 OSJNEe13A19.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe13A19 5', mRNA sequence
Length = 714
Score = 69.9 bits (35), Expect = 9e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 586 tcaaacccgtccatctctggcatctgaacatccataaaacatgcatc 632
|||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 632 tcaaacccatccatctcaggcatctgaacatccataaaacaagcatc 586
>ref|NM_196042.1| Oryza sativa (japonica cultivar-group) putative histidine kinase
(OSJNBa0073L01.1), mRNA
Length = 3161
Score = 69.9 bits (35), Expect = 9e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 586 tcaaacccgtccatctctggcatctgaacatccataaaacatgcatc 632
|||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 2567 tcaaacccatccatctcaggcatctgaacatccataaaacaagcatc 2521
Score = 54.0 bits (27), Expect = 5e-004
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactgagattttgcaaca 2184
|||||||| || ||||| ||||||||||| ||||||| || ||||| || || ||||||
Sbjct: 1058 ccattcattggagttctaatctcatgtgaaacagttgctagaaactgggacttagcaaca 999
Query: 2185 tcagcagcttc 2195
|| ||||||||
Sbjct: 998 tctgcagcttc 988
>gb|D47801.1|D47801 RICS13496A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 406
Score = 61.9 bits (31), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 586 tcaaacccgtccatctctggcatctgaacatccataaaacatgcat 631
|||||||| ||||| || ||||||||||||||||||||||| ||||
Sbjct: 141 tcaaacccatccatntcaggcatctgaacatccataaaacaagcat 96
>dbj|AK121000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044K19, full
insert sequence
Length = 4802
Score = 61.9 bits (31), Expect = 2e-006
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 586 tcaaacccgtccatctctggcatctgaacatccataaaacatgcatc 632
|||||||| |||||||| |||||||||||||||||||||| |||||
Sbjct: 3953 tcaaacccatccatctcaagcatctgaacatccataaaacaagcatc 3907
Score = 54.0 bits (27), Expect = 5e-004
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactgagattttgcaaca 2184
|||||||| || ||||| ||||||||||| ||||||| || ||||| || || ||||||
Sbjct: 2328 ccattcattggagttctaatctcatgtgaaacagttgctagaaactgggacttagcaaca 2269
Query: 2185 tcagcagcttc 2195
|| ||||||||
Sbjct: 2268 tctgcagcttc 2258
>gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L01 genomic sequence,
complete sequence
Length = 179199
Score = 61.9 bits (31), Expect = 2e-006
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatc 632
|||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 9460 acccatccatctcaggcatctgaacatccataaaacaagcatc 9502
>gb|AACV01021333.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021333, whole
genome shotgun sequence
Length = 43761
Score = 61.9 bits (31), Expect = 2e-006
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatc 632
|||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 19910 acccatccatctcaggcatctgaacatccataaaacaagcatc 19952
>ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2206062
Score = 61.9 bits (31), Expect = 2e-006
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatc 632
|||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 1312188 acccatccatctcaggcatctgaacatccataaaacaagcatc 1312230
>gb|CH401253.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000090 genomic
scaffold, whole genome shotgun sequence
Length = 2475376
Score = 61.9 bits (31), Expect = 2e-006
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatc 632
|||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 1496584 acccatccatctcaggcatctgaacatccataaaacaagcatc 1496626
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 61.9 bits (31), Expect = 2e-006
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatc 632
|||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 9886902 acccatccatctcaggcatctgaacatccataaaacaagcatc 9886944
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 61.9 bits (31), Expect = 2e-006
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatc 632
|||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 10678692 acccatccatctcaggcatctgaacatccataaaacaagcatc 10678734
>gb|AC083945.3| Oryza sativa (japonica cultivar-group) chromosome X clone
OSJNBa0058E19, complete sequence
Length = 147706
Score = 61.9 bits (31), Expect = 2e-006
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatc 632
|||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 2159 acccatccatctcaggcatctgaacatccataaaacaagcatc 2117
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 61.9 bits (31), Expect = 2e-006
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatc 632
|||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 10684731 acccatccatctcaggcatctgaacatccataaaacaagcatc 10684773
>gb|AQ160958.1|AQ160958 nbxb0006A20r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0006A20r, DNA sequence
Length = 636
Score = 56.0 bits (28), Expect = 1e-004
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||| ||||| | ||||| || ||||| | | |||||||||
Sbjct: 261 tttgtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaa 320
Query: 2533 ttctccacaagtgactccacatcaaaggctcc 2564
|| || || ||||||||||||||||| |||||
Sbjct: 321 ttttctactagtgactccacatcaaatgctcc 352
>gb|AQ259758.1|AQ259758 nbxb0023D16r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0023D16r, DNA sequence
Length = 713
Score = 56.0 bits (28), Expect = 1e-004
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||| ||||| | ||||| || ||||| | | |||||||||
Sbjct: 217 tttgtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaa 276
Query: 2533 ttctccacaagtgactccacatcaaaggctcc 2564
|| || || ||||||||||||||||| |||||
Sbjct: 277 ttttctactagtgactccacatcaaatgctcc 308
>dbj|AK067580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112K17, full
insert sequence
Length = 2629
Score = 52.0 bits (26), Expect = 0.002
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactgagattttgcaaca 2184
|||||||| || ||||||||||||||||| |||| |||| |||||| || ||||| ||
Sbjct: 355 ccattcattggagttctgatctcatgtgaaacagtagccaagaactgtgactttgcgacg 296
Query: 2185 tcagcagcttctgc 2198
|| ||| |||||||
Sbjct: 295 tctgcatcttctgc 282
>dbj|AK121135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077D19, full
insert sequence
Length = 4044
Score = 52.0 bits (26), Expect = 0.002
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactgagattttgcaaca 2184
|||||||| || ||||||||||||||||| |||| |||| |||||| || ||||| ||
Sbjct: 1774 ccattcattggagttctgatctcatgtgaaacagtagccaagaactgtgactttgcgacg 1715
Query: 2185 tcagcagcttctgc 2198
|| ||| |||||||
Sbjct: 1714 tctgcatcttctgc 1701
Score = 48.1 bits (24), Expect = 0.031
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 3012 gaaggtggagatgagaatggcgatggcgtggacgtggttgacggtgaccccgaactgctc 3071
||||||||||| ||| ||||||| ||| |||| |||||| | | |||| |||||| ||
Sbjct: 774 gaaggtggagacgaggatggcgagggcctggaggtggttcatgctgacgttgaactggtc 715
Query: 3072 ctgcagcatcctggccctctcctcgcacatgctgacgagg 3111
||| ||||| | ||| | ||| |||||||||||| |||||
Sbjct: 714 ctggagcatgcgggcgcgctcgtcgcacatgctggcgagg 675
>gb|AACV01004584.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004584, whole
genome shotgun sequence
Length = 15629
Score = 52.0 bits (26), Expect = 0.002
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 3286 tcctcctcctctttctcttcctcctt 3311
||||||||||||||||||||||||||
Sbjct: 1593 tcctcctcctctttctcttcctcctt 1568
>ref|XM_463649.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3072
Score = 52.0 bits (26), Expect = 0.002
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactgagattttgcaaca 2184
|||||||| || ||||||||||||||||| |||| |||| |||||| || ||||| ||
Sbjct: 1367 ccattcattggagttctgatctcatgtgaaacagtagccaagaactgtgactttgcgacg 1308
Query: 2185 tcagcagcttctgc 2198
|| ||| |||||||
Sbjct: 1307 tctgcatcttctgc 1294
Score = 48.1 bits (24), Expect = 0.031
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 3012 gaaggtggagatgagaatggcgatggcgtggacgtggttgacggtgaccccgaactgctc 3071
||||||||||| ||| ||||||| ||| |||| |||||| | | |||| |||||| ||
Sbjct: 438 gaaggtggagacgaggatggcgagggcctggaggtggttcatgctgacgttgaactggtc 379
Query: 3072 ctgcagcatcctggccctctcctcgcacatgctgacgagg 3111
||| ||||| | ||| | ||| |||||||||||| |||||
Sbjct: 378 ctggagcatgcgggcgcgctcgtcgcacatgctggcgagg 339
>gb|AACV01002960.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002960, whole
genome shotgun sequence
Length = 37306
Score = 48.1 bits (24), Expect = 0.031
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 3012 gaaggtggagatgagaatggcgatggcgtggacgtggttgacggtgaccccgaactgctc 3071
||||||||||| ||| ||||||| ||| |||| |||||| | | |||| |||||| ||
Sbjct: 13084 gaaggtggagacgaggatggcgagggcctggaggtggttcatgctgacgttgaactggtc 13025
Query: 3072 ctgcagcatcctggccctctcctcgcacatgctgacgagg 3111
||| ||||| | ||| | ||| |||||||||||| |||||
Sbjct: 13024 ctggagcatgcgggcgcgctcgtcgcacatgctggcgagg 12985
Score = 46.1 bits (23), Expect = 0.12
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
|||||||| || ||||||||||||||||| |||| |||| ||||||
Sbjct: 14741 ccattcattggagttctgatctcatgtgaaacagtagccaagaactg 14695
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 48.1 bits (24), Expect = 0.031
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 3012 gaaggtggagatgagaatggcgatggcgtggacgtggttgacggtgaccccgaactgctc 3071
||||||||||| ||| ||||||| ||| |||| |||||| | | |||| |||||| ||
Sbjct: 40481869 gaaggtggagacgaggatggcgagggcctggaggtggttcatgctgacgttgaactggtc 40481928
Query: 3072 ctgcagcatcctggccctctcctcgcacatgctgacgagg 3111
||| ||||| | ||| | ||| |||||||||||| |||||
Sbjct: 40481929 ctggagcatgcgggcgcgctcgtcgcacatgctggcgagg 40481968
Score = 46.1 bits (23), Expect = 0.12
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
|||||||| || ||||||||||||||||| |||| |||| ||||||
Sbjct: 40480212 ccattcattggagttctgatctcatgtgaaacagtagccaagaactg 40480258
Score = 44.1 bits (22), Expect = 0.49
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 29356441 ctcctcctcctcttcctcttcctcct 29356466
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 48.1 bits (24), Expect = 0.031
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 3012 gaaggtggagatgagaatggcgatggcgtggacgtggttgacggtgaccccgaactgctc 3071
||||||||||| ||| ||||||| ||| |||| |||||| | | |||| |||||| ||
Sbjct: 110163 gaaggtggagacgaggatggcgagggcctggaggtggttcatgctgacgttgaactggtc 110222
Query: 3072 ctgcagcatcctggccctctcctcgcacatgctgacgagg 3111
||| ||||| | ||| | ||| |||||||||||| |||||
Sbjct: 110223 ctggagcatgcgggcgcgctcgtcgcacatgctggcgagg 110262
Score = 46.1 bits (23), Expect = 0.12
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
|||||||| || ||||||||||||||||| |||| |||| ||||||
Sbjct: 108506 ccattcattggagttctgatctcatgtgaaacagtagccaagaactg 108552
>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0592G05
Length = 146220
Score = 48.1 bits (24), Expect = 0.031
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 3012 gaaggtggagatgagaatggcgatggcgtggacgtggttgacggtgaccccgaactgctc 3071
||||||||||| ||| ||||||| ||| |||| |||||| | | |||| |||||| ||
Sbjct: 52440 gaaggtggagacgaggatggcgagggcctggaggtggttcatgctgacgttgaactggtc 52499
Query: 3072 ctgcagcatcctggccctctcctcgcacatgctgacgagg 3111
||| ||||| | ||| | ||| |||||||||||| |||||
Sbjct: 52500 ctggagcatgcgggcgcgctcgtcgcacatgctggcgagg 52539
Score = 46.1 bits (23), Expect = 0.12
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
|||||||| || ||||||||||||||||| |||| |||| ||||||
Sbjct: 50783 ccattcattggagttctgatctcatgtgaaacagtagccaagaactg 50829
>dbj|AP006167.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1455F06
Length = 140848
Score = 48.1 bits (24), Expect = 0.031
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 3012 gaaggtggagatgagaatggcgatggcgtggacgtggttgacggtgaccccgaactgctc 3071
||||||||||| ||| ||||||| ||| |||| |||||| | | |||| |||||| ||
Sbjct: 110163 gaaggtggagacgaggatggcgagggcctggaggtggttcatgctgacgttgaactggtc 110222
Query: 3072 ctgcagcatcctggccctctcctcgcacatgctgacgagg 3111
||| ||||| | ||| | ||| |||||||||||| |||||
Sbjct: 110223 ctggagcatgcgggcgcgctcgtcgcacatgctggcgagg 110262
Score = 46.1 bits (23), Expect = 0.12
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
|||||||| || ||||||||||||||||| |||| |||| ||||||
Sbjct: 108506 ccattcattggagttctgatctcatgtgaaacagtagccaagaactg 108552
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 48.1 bits (24), Expect = 0.031
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 3012 gaaggtggagatgagaatggcgatggcgtggacgtggttgacggtgaccccgaactgctc 3071
||||||||||| ||| ||||||| ||| |||| |||||| | | |||| |||||| ||
Sbjct: 14684363 gaaggtggagacgaggatggcgagggcctggaggtggttcatgctgacgttgaactggtc 14684422
Query: 3072 ctgcagcatcctggccctctcctcgcacatgctgacgagg 3111
||| ||||| | ||| | ||| |||||||||||| |||||
Sbjct: 14684423 ctggagcatgcgggcgcgctcgtcgcacatgctggcgagg 14684462
Score = 46.1 bits (23), Expect = 0.12
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactg 2171
|||||||| || ||||||||||||||||| |||| |||| ||||||
Sbjct: 14682706 ccattcattggagttctgatctcatgtgaaacagtagccaagaactg 14682752
Score = 44.1 bits (22), Expect = 0.49
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 3728011 ctcctcctcctcttcctcttcctcct 3728036
Score = 44.1 bits (22), Expect = 0.49
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 3726665 ctcctcctcctcttcctcttcctcct 3726690
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,751,300
Number of Sequences: 438736
Number of extensions: 4751300
Number of successful extensions: 10175
Number of sequences better than 0.5: 97
Number of HSP's better than 0.5 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9111
Number of HSP's gapped (non-prelim): 1037
length of query: 3330
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 3308
effective length of database: 2,790,767,724
effective search space: 9231859630992
effective search space used: 9231859630992
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)