BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921718.2.1
(649 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK121972.1| Oryza sativa (japonica cultivar-group) cDNA... 468 e-129
gb|AC139168.1| Oryza sativa (japonica cultivar-group) chrom... 468 e-129
gb|AC135209.2| Oryza sativa (japonica cultivar-group) chrom... 468 e-129
gb|AACV01006289.1| Oryza sativa (japonica cultivar-group) c... 468 e-129
ref|NM_187480.1| Oryza sativa (japonica cultivar-group), p... 468 e-129
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 468 e-129
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 468 e-129
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 468 e-129
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 468 e-129
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 468 e-129
gb|AQ574384.1|AQ574384 nbxb0085K24r CUGI Rice BAC Library O... 92 4e-016
gb|AU085744.1|AU085744 AU085744 Rice callus Oryza sativa (j... 92 4e-016
gb|CB647910.1|CB647910 OSJNEb11A19.r OSJNEb Oryza sativa (j... 68 6e-009
gb|CB648443.1|CB648443 OSJNEb11N06.r OSJNEb Oryza sativa (j... 68 6e-009
gb|CB649982.1|CB649982 OSJNEb14D07.r OSJNEb Oryza sativa (j... 68 6e-009
gb|CB653961.1|CB653961 OSJNEc05H12.r OSJNEc Oryza sativa (j... 68 6e-009
gb|CB656682.1|CB656682 OSJNEc11F02.r OSJNEc Oryza sativa (j... 68 6e-009
gb|CB669767.1|CB669767 OSJNEe02I01.f OSJNEe Oryza sativa (j... 68 6e-009
gb|CB674915.1|CB674915 OSJNEe10E05.r OSJNEe Oryza sativa (j... 68 6e-009
gb|CF297706.1|CF297706 30DGS--08-L20.g1 Rice leaf plasmid c... 68 6e-009
dbj|AK061976.1| Oryza sativa (japonica cultivar-group) cDNA... 68 6e-009
dbj|AK064779.1| Oryza sativa (japonica cultivar-group) cDNA... 68 6e-009
dbj|AK122126.1| Oryza sativa (japonica cultivar-group) cDNA... 68 6e-009
gb|AACV01017697.1| Oryza sativa (japonica cultivar-group) c... 68 6e-009
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 68 6e-009
ref|NM_190595.1| Oryza sativa (japonica cultivar-group), p... 68 6e-009
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 68 6e-009
dbj|AP004127.1| Oryza sativa (japonica cultivar-group) geno... 68 6e-009
dbj|AP003251.3| Oryza sativa (japonica cultivar-group) geno... 68 6e-009
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 68 6e-009
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 68 6e-009
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 68 6e-009
gb|CX056264.1|CX056264 B010802E01 Rice cold stress germinat... 64 1e-007
gb|AU029642.1|AU029642 AU029642 Rice panicle shorter than 3... 60 2e-006
gb|CB648170.1|CB648170 OSJNEb11H03.r OSJNEb Oryza sativa (j... 60 2e-006
gb|CB648219.1|CB648219 OSJNEb11I04.r OSJNEb Oryza sativa (j... 60 2e-006
gb|CB660953.1|CB660953 OSJNEd03D08.r OSJNEd Oryza sativa (j... 60 2e-006
gb|CB662524.1|CB662524 OSJNEd06K08.f OSJNEd Oryza sativa (j... 60 2e-006
gb|CB662525.1|CB662525 OSJNEd06K08.r OSJNEd Oryza sativa (j... 60 2e-006
gb|CB665497.1|CB665497 OSJNEd11P11.r OSJNEd Oryza sativa (j... 60 2e-006
gb|CB672103.1|CB672103 OSJNEe05P12.r OSJNEe Oryza sativa (j... 60 2e-006
gb|CB672105.1|CB672105 OSJNEe05P13.r OSJNEe Oryza sativa (j... 60 2e-006
gb|CB674119.1|CB674119 OSJNEe09A09.r OSJNEe Oryza sativa (j... 60 2e-006
gb|CB674427.1|CB674427 OSJNEe09H13.r OSJNEe Oryza sativa (j... 60 2e-006
gb|CB675124.1|CB675124 OSJNEe10K07.r OSJNEe Oryza sativa (j... 60 2e-006
dbj|AP004705.3| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|AACV01002670.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
ref|XM_480870.1| Oryza sativa (japonica cultivar-group), mRNA 60 2e-006
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 60 2e-006
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|D48555.1|D48555 RICS14829A Rice green shoot Oryza sativa... 48 0.006
dbj|AP005873.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
dbj|AP003817.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
dbj|AP006851.2| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AACV01003144.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.006
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 48 0.006
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, comple... 44 0.093
dbj|AP003929.1| Oryza sativa (japonica cultivar-group) chro... 44 0.093
gb|AF161269.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.093
ref|NT_107132.1| Oryza sativa (japonica cultivar-group) 44 0.093
gb|AACV01017032.1| Oryza sativa (japonica cultivar-group) c... 44 0.093
gb|AACV01023672.1| Oryza sativa (japonica cultivar-group) c... 44 0.093
dbj|AP005099.2| Oryza sativa (japonica cultivar-group) geno... 44 0.093
gb|CH401265.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.093
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.093
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.093
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.093
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.093
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.093
gb|CZ167627.1|CZ167627 UCDRDs40_5.1 UCD RDs Rice Insertions... 42 0.37
dbj|AP003906.1| Oryza sativa (japonica cultivar-group) chro... 42 0.37
emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC O... 42 0.37
dbj|AP004589.3| Oryza sativa (japonica cultivar-group) geno... 42 0.37
gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbar... 42 0.37
emb|AL844498.4|CNS08CAV Oryza sativa chromosome 12, . BAC O... 42 0.37
ref|NT_107155.1| Oryza sativa (japonica cultivar-group) 42 0.37
gb|AACV01005789.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
gb|AACV01010700.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
gb|AACV01017509.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
gb|AACV01024009.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 42 0.37
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 42 0.37
dbj|AP005442.3| Oryza sativa (japonica cultivar-group) geno... 42 0.37
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|CH401229.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromoso... 42 0.37
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.37
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.37
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
>dbj|AK121972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108I03, full
insert sequence
Length = 1476
Score = 468 bits (236), Expect = e-129
Identities = 329/360 (91%)
Strand = Plus / Plus
Query: 14 gccaggctcgcgtcgggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtc 73
|||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 915 gccaagctcgcgtcgggcgcgcacgtcctgggcaacgtgctcgtccacgagaccgccgtc 974
Query: 74 atcggggacggctgcctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggag 133
||||| || || ||||| |||||||| |||||||| || || || || ||||||||||||
Sbjct: 975 atcggcgagggttgcctgatcgggccggacgtcgccgttggccccgggtgcgtggtggag 1034
Query: 134 gccggggtgcgcctgtcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcc 193
||||||||| | |||||||| ||||| || ||||||| ||| ||||||||| |||||||
Sbjct: 1035 gccggggtgaggctgtcccggtgcacggtgatgcgcggcgcccgcgtcaagaagcacgcg 1094
Query: 194 tgcgtctccagcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgag 253
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 1095 tgcatctccagcagcatcatcgggtggcactccaccgtcggcatgtgggcgcgcgtcgag 1154
Query: 254 aacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggc 313
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 1155 aacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtctacagcaacggcggc 1214
Query: 314 gtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 1215 gtggtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagattgtcatgtga 1274
>gb|AC139168.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1364E02,
complete sequence
Length = 126027
Score = 468 bits (236), Expect = e-129
Identities = 329/360 (91%)
Strand = Plus / Minus
Query: 14 gccaggctcgcgtcgggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtc 73
|||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 73024 gccaagctcgcgtcgggcgcgcacgtcctgggcaacgtgctcgtccacgagaccgccgtc 72965
Query: 74 atcggggacggctgcctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggag 133
||||| || || ||||| |||||||| |||||||| || || || || ||||||||||||
Sbjct: 72964 atcggcgagggttgcctgatcgggccggacgtcgccgttggccccgggtgcgtggtggag 72905
Query: 134 gccggggtgcgcctgtcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcc 193
||||||||| | |||||||| ||||| || ||||||| ||| ||||||||| |||||||
Sbjct: 72904 gccggggtgaggctgtcccggtgcacggtgatgcgcggcgcccgcgtcaagaagcacgcg 72845
Query: 194 tgcgtctccagcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgag 253
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 72844 tgcatctccagcagcatcatcgggtggcactccaccgtcggcatgtgggcgcgcgtcgag 72785
Query: 254 aacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggc 313
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 72784 aacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtctacagcaacggcggc 72725
Query: 314 gtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 72724 gtggtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagattgtcatgtga 72665
>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0071M09, complete sequence
Length = 143595
Score = 468 bits (236), Expect = e-129
Identities = 329/360 (91%)
Strand = Plus / Minus
Query: 14 gccaggctcgcgtcgggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtc 73
|||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 6997 gccaagctcgcgtcgggcgcgcacgtcctgggcaacgtgctcgtccacgagaccgccgtc 6938
Query: 74 atcggggacggctgcctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggag 133
||||| || || ||||| |||||||| |||||||| || || || || ||||||||||||
Sbjct: 6937 atcggcgagggttgcctgatcgggccggacgtcgccgttggccccgggtgcgtggtggag 6878
Query: 134 gccggggtgcgcctgtcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcc 193
||||||||| | |||||||| ||||| || ||||||| ||| ||||||||| |||||||
Sbjct: 6877 gccggggtgaggctgtcccggtgcacggtgatgcgcggcgcccgcgtcaagaagcacgcg 6818
Query: 194 tgcgtctccagcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgag 253
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 6817 tgcatctccagcagcatcatcgggtggcactccaccgtcggcatgtgggcgcgcgtcgag 6758
Query: 254 aacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggc 313
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 6757 aacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtctacagcaacggcggc 6698
Query: 314 gtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 6697 gtggtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagattgtcatgtga 6638
>gb|AACV01006289.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006289, whole
genome shotgun sequence
Length = 25280
Score = 468 bits (236), Expect = e-129
Identities = 329/360 (91%)
Strand = Plus / Plus
Query: 14 gccaggctcgcgtcgggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtc 73
|||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 19058 gccaagctcgcgtcgggcgcgcacgtcctgggcaacgtgctcgtccacgagaccgccgtc 19117
Query: 74 atcggggacggctgcctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggag 133
||||| || || ||||| |||||||| |||||||| || || || || ||||||||||||
Sbjct: 19118 atcggcgagggttgcctgatcgggccggacgtcgccgttggccccgggtgcgtggtggag 19177
Query: 134 gccggggtgcgcctgtcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcc 193
||||||||| | |||||||| ||||| || ||||||| ||| ||||||||| |||||||
Sbjct: 19178 gccggggtgaggctgtcccggtgcacggtgatgcgcggcgcccgcgtcaagaagcacgcg 19237
Query: 194 tgcgtctccagcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgag 253
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 19238 tgcatctccagcagcatcatcgggtggcactccaccgtcggcatgtgggcgcgcgtcgag 19297
Query: 254 aacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggc 313
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 19298 aacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtctacagcaacggcggc 19357
Query: 314 gtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 19358 gtggtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagattgtcatgtga 19417
>ref|NM_187480.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1086
Score = 468 bits (236), Expect = e-129
Identities = 329/360 (91%)
Strand = Plus / Plus
Query: 14 gccaggctcgcgtcgggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtc 73
|||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 727 gccaagctcgcgtcgggcgcgcacgtcctgggcaacgtgctcgtccacgagaccgccgtc 786
Query: 74 atcggggacggctgcctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggag 133
||||| || || ||||| |||||||| |||||||| || || || || ||||||||||||
Sbjct: 787 atcggcgagggttgcctgatcgggccggacgtcgccgttggccccgggtgcgtggtggag 846
Query: 134 gccggggtgcgcctgtcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcc 193
||||||||| | |||||||| ||||| || ||||||| ||| ||||||||| |||||||
Sbjct: 847 gccggggtgaggctgtcccggtgcacggtgatgcgcggcgcccgcgtcaagaagcacgcg 906
Query: 194 tgcgtctccagcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgag 253
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 907 tgcatctccagcagcatcatcgggtggcactccaccgtcggcatgtgggcgcgcgtcgag 966
Query: 254 aacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggc 313
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 967 aacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtctacagcaacggcggc 1026
Query: 314 gtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 1027 gtggtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagattgtcatgtga 1086
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 468 bits (236), Expect = e-129
Identities = 329/360 (91%)
Strand = Plus / Minus
Query: 14 gccaggctcgcgtcgggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtc 73
|||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 225787 gccaagctcgcgtcgggcgcgcacgtcctgggcaacgtgctcgtccacgagaccgccgtc 225728
Query: 74 atcggggacggctgcctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggag 133
||||| || || ||||| |||||||| |||||||| || || || || ||||||||||||
Sbjct: 225727 atcggcgagggttgcctgatcgggccggacgtcgccgttggccccgggtgcgtggtggag 225668
Query: 134 gccggggtgcgcctgtcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcc 193
||||||||| | |||||||| ||||| || ||||||| ||| ||||||||| |||||||
Sbjct: 225667 gccggggtgaggctgtcccggtgcacggtgatgcgcggcgcccgcgtcaagaagcacgcg 225608
Query: 194 tgcgtctccagcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgag 253
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 225607 tgcatctccagcagcatcatcgggtggcactccaccgtcggcatgtgggcgcgcgtcgag 225548
Query: 254 aacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggc 313
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 225547 aacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtctacagcaacggcggc 225488
Query: 314 gtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 225487 gtggtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagattgtcatgtga 225428
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 468 bits (236), Expect = e-129
Identities = 329/360 (91%)
Strand = Plus / Minus
Query: 14 gccaggctcgcgtcgggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtc 73
|||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 8840391 gccaagctcgcgtcgggcgcgcacgtcctgggcaacgtgctcgtccacgagaccgccgtc 8840332
Query: 74 atcggggacggctgcctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggag 133
||||| || || ||||| |||||||| |||||||| || || || || ||||||||||||
Sbjct: 8840331 atcggcgagggttgcctgatcgggccggacgtcgccgttggccccgggtgcgtggtggag 8840272
Query: 134 gccggggtgcgcctgtcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcc 193
||||||||| | |||||||| ||||| || ||||||| ||| ||||||||| |||||||
Sbjct: 8840271 gccggggtgaggctgtcccggtgcacggtgatgcgcggcgcccgcgtcaagaagcacgcg 8840212
Query: 194 tgcgtctccagcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgag 253
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 8840211 tgcatctccagcagcatcatcgggtggcactccaccgtcggcatgtgggcgcgcgtcgag 8840152
Query: 254 aacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggc 313
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 8840151 aacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtctacagcaacggcggc 8840092
Query: 314 gtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 8840091 gtggtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagattgtcatgtga 8840032
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 398 aatccaaatcacaaggggccc 418
|||||||||||||||||||||
Sbjct: 1440655 aatccaaatcacaaggggccc 1440675
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 468 bits (236), Expect = e-129
Identities = 329/360 (91%)
Strand = Plus / Minus
Query: 14 gccaggctcgcgtcgggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtc 73
|||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 9032753 gccaagctcgcgtcgggcgcgcacgtcctgggcaacgtgctcgtccacgagaccgccgtc 9032694
Query: 74 atcggggacggctgcctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggag 133
||||| || || ||||| |||||||| |||||||| || || || || ||||||||||||
Sbjct: 9032693 atcggcgagggttgcctgatcgggccggacgtcgccgttggccccgggtgcgtggtggag 9032634
Query: 134 gccggggtgcgcctgtcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcc 193
||||||||| | |||||||| ||||| || ||||||| ||| ||||||||| |||||||
Sbjct: 9032633 gccggggtgaggctgtcccggtgcacggtgatgcgcggcgcccgcgtcaagaagcacgcg 9032574
Query: 194 tgcgtctccagcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgag 253
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 9032573 tgcatctccagcagcatcatcgggtggcactccaccgtcggcatgtgggcgcgcgtcgag 9032514
Query: 254 aacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggc 313
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 9032513 aacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtctacagcaacggcggc 9032454
Query: 314 gtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 9032453 gtggtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagattgtcatgtga 9032394
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 398 aatccaaatcacaaggggccc 418
|||||||||||||||||||||
Sbjct: 1633017 aatccaaatcacaaggggccc 1633037
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 468 bits (236), Expect = e-129
Identities = 329/360 (91%)
Strand = Plus / Minus
Query: 14 gccaggctcgcgtcgggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtc 73
|||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 8879971 gccaagctcgcgtcgggcgcgcacgtcctgggcaacgtgctcgtccacgagaccgccgtc 8879912
Query: 74 atcggggacggctgcctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggag 133
||||| || || ||||| |||||||| |||||||| || || || || ||||||||||||
Sbjct: 8879911 atcggcgagggttgcctgatcgggccggacgtcgccgttggccccgggtgcgtggtggag 8879852
Query: 134 gccggggtgcgcctgtcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcc 193
||||||||| | |||||||| ||||| || ||||||| ||| ||||||||| |||||||
Sbjct: 8879851 gccggggtgaggctgtcccggtgcacggtgatgcgcggcgcccgcgtcaagaagcacgcg 8879792
Query: 194 tgcgtctccagcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgag 253
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 8879791 tgcatctccagcagcatcatcgggtggcactccaccgtcggcatgtgggcgcgcgtcgag 8879732
Query: 254 aacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggc 313
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 8879731 aacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtctacagcaacggcggc 8879672
Query: 314 gtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 8879671 gtggtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagattgtcatgtga 8879612
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 398 aatccaaatcacaaggggccc 418
|||||||||||||||||||||
Sbjct: 1434902 aatccaaatcacaaggggccc 1434922
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 468 bits (236), Expect = e-129
Identities = 329/360 (91%)
Strand = Plus / Minus
Query: 14 gccaggctcgcgtcgggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtc 73
|||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 8882136 gccaagctcgcgtcgggcgcgcacgtcctgggcaacgtgctcgtccacgagaccgccgtc 8882077
Query: 74 atcggggacggctgcctcatcgggcccgacgtcgcggtcgggccaggctgcgtggtggag 133
||||| || || ||||| |||||||| |||||||| || || || || ||||||||||||
Sbjct: 8882076 atcggcgagggttgcctgatcgggccggacgtcgccgttggccccgggtgcgtggtggag 8882017
Query: 134 gccggggtgcgcctgtcccgctgcaccgtcatgcgcgccgcgcgcgtcaagcagcacgcc 193
||||||||| | |||||||| ||||| || ||||||| ||| ||||||||| |||||||
Sbjct: 8882016 gccggggtgaggctgtcccggtgcacggtgatgcgcggcgcccgcgtcaagaagcacgcg 8881957
Query: 194 tgcgtctccagcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgag 253
||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 8881956 tgcatctccagcagcatcatcgggtggcactccaccgtcggcatgtgggcgcgcgtcgag 8881897
Query: 254 aacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggc 313
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 8881896 aacatgaccatcctcggcgaggacgtgcacgtctgcgacgaggtctacagcaacggcggc 8881837
Query: 314 gtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 8881836 gtggtgctcccgcacaaggagatcaagtccagcatcctcaagcccgagattgtcatgtga 8881777
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 398 aatccaaatcacaaggggccc 418
|||||||||||||||||||||
Sbjct: 1434904 aatccaaatcacaaggggccc 1434924
>gb|AQ574384.1|AQ574384 nbxb0085K24r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0085K24r, DNA sequence
Length = 680
Score = 91.7 bits (46), Expect = 4e-016
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 14 gccaggctcgcgtcgggcgcgcacgtcctgggcaacgtgctggtgcacgagaccgcggtc 73
|||| ||||||||||||||||||||| |||||||||||||| || |||||||||| |||
Sbjct: 598 gccaagctcgcgtcgggcgcgcacgtnctgggcaacgtgctcgtncacgagaccgncgtc 657
Query: 74 atcggggacggctgcctcatcgg 96
||||| || || ||||| |||||
Sbjct: 658 atcggcgagggttgcctgatcgg 680
>gb|AU085744.1|AU085744 AU085744 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52262, mRNA sequence
Length = 318
Score = 91.7 bits (46), Expect = 4e-016
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 317 gtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct: 3 gtgctcccgcacaaggagatcaagtccagcatcctcaancccgagattgtcatgtga 59
>gb|CB647910.1|CB647910 OSJNEb11A19.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11A19 3', mRNA sequence
Length = 745
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 373 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 314
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 313 tgtcatgtga 304
>gb|CB648443.1|CB648443 OSJNEb11N06.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11N06 3', mRNA sequence
Length = 815
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 413 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 354
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 353 tgtcatgtga 344
>gb|CB649982.1|CB649982 OSJNEb14D07.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14D07 3', mRNA sequence
Length = 720
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 355 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 296
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 295 tgtcatgtga 286
>gb|CB653961.1|CB653961 OSJNEc05H12.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05H12 3', mRNA sequence
Length = 818
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 284 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 225
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 224 tgtcatgtga 215
>gb|CB656682.1|CB656682 OSJNEc11F02.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11F02 3', mRNA sequence
Length = 823
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 306 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 247
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 246 tgtcatgtga 237
>gb|CB669767.1|CB669767 OSJNEe02I01.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02I01 5', mRNA sequence
Length = 825
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 460 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 401
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 400 tgtcatgtga 391
>gb|CB674915.1|CB674915 OSJNEe10E05.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10E05 3', mRNA sequence
Length = 750
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 222 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 163
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 162 tgtcatgtga 153
>gb|CF297706.1|CF297706 30DGS--08-L20.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--08-L20, mRNA sequence
Length = 340
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 273 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 214
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 213 tgtcatgtga 204
>dbj|AK061976.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A03, full
insert sequence
Length = 1655
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 1212 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 1271
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 1272 tgtcatgtga 1281
>dbj|AK064779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B04, full
insert sequence
Length = 1479
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 1213 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 1272
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 1273 tgtcatgtga 1282
>dbj|AK122126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132D02, full
insert sequence
Length = 1708
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 1327 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 1386
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 1387 tgtcatgtga 1396
>gb|AACV01017697.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017697, whole
genome shotgun sequence
Length = 39221
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 19537 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 19478
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 19477 tgtcatgtga 19468
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 36471517 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 36471576
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 36471577 tgtcatgtga 36471586
>ref|NM_190595.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1086
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 1017 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 1076
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 1077 tgtcatgtga 1086
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 10918900 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 10918959
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 10918960 tgtcatgtga 10918969
>dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0005H10
Length = 142885
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 42686 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 42745
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 42746 tgtcatgtga 42755
>dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0446B05
Length = 149145
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 140724 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 140783
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 140784 tgtcatgtga 140793
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067
genomic scaffold, whole genome shotgun sequence
Length = 19501165
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 181079 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 181020
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 181019 tgtcatgtga 181010
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 7783085 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 7783026
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 7783025 tgtcatgtga 7783016
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 419 ttgcattgcattgcattgcat 439
|||||||||||||||||||||
Sbjct: 5644846 ttgcattgcattgcattgcat 5644866
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 67.9 bits (34), Expect = 6e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 36390847 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 36390906
Query: 364 cgtcatgtga 373
|||||||||
Sbjct: 36390907 tgtcatgtga 36390916
>gb|CX056264.1|CX056264 B010802E01 Rice cold stress germination cDNA-AFLP Oryza sativa
(japonica cultivar-group) cDNA clone B010802E01 5'
similar to Putative GDP-mannose pyrophosphorylase [O.
sativa], mRNA sequence
Length = 419
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 304 caacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagat 363
||||||||| || || ||||||||||| |||||||| || |||||||| ||||| |||||
Sbjct: 68 caacggcggtgttgttctcccgcacaaagagatcaagtcaagcatcctgaagcctgagat 9
Query: 364 cgtcatgt 371
|||||||
Sbjct: 8 tgtcatgt 1
>gb|AU029642.1|AU029642 AU029642 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31176_6Z, mRNA sequence
Length = 665
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 518 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 571
>gb|CB648170.1|CB648170 OSJNEb11H03.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11H03 3', mRNA sequence
Length = 773
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 253 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 200
>gb|CB648219.1|CB648219 OSJNEb11I04.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11I04 3', mRNA sequence
Length = 801
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 259 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 206
>gb|CB660953.1|CB660953 OSJNEd03D08.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd03D08 3', mRNA sequence
Length = 715
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 150 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 97
>gb|CB662524.1|CB662524 OSJNEd06K08.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd06K08 5', mRNA sequence
Length = 859
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 220 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 167
>gb|CB662525.1|CB662525 OSJNEd06K08.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd06K08 3', mRNA sequence
Length = 825
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 220 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 167
>gb|CB665497.1|CB665497 OSJNEd11P11.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11P11 3', mRNA sequence
Length = 815
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 208 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 155
>gb|CB672103.1|CB672103 OSJNEe05P12.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05P12 3', mRNA sequence
Length = 818
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 259 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 206
>gb|CB672105.1|CB672105 OSJNEe05P13.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05P13 3', mRNA sequence
Length = 827
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 258 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 205
>gb|CB674119.1|CB674119 OSJNEe09A09.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09A09 3', mRNA sequence
Length = 804
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 263 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 210
>gb|CB674427.1|CB674427 OSJNEe09H13.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09H13 3', mRNA sequence
Length = 916
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 278 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 225
>gb|CB675124.1|CB675124 OSJNEe10K07.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10K07 3', mRNA sequence
Length = 823
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 216 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 163
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0682A06
Length = 142023
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 76227 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 76174
>gb|AACV01002670.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002670, whole
genome shotgun sequence
Length = 40539
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 19836 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 19783
>ref|XM_480870.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1086
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 1033 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 1086
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 8103644 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 8103591
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 419 ttgcattgcattgcattgcat 439
|||||||||||||||||||||
Sbjct: 5612086 ttgcattgcattgcattgcat 5612106
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 60.0 bits (30), Expect = 2e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 320 ctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
||||||||||| ||||||||||| |||||||| || || ||||| |||||||||
Sbjct: 10671359 ctcccgcacaaagagatcaaatcaagcatcctgaaacctgagattgtcatgtga 10671412
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,082,639
Number of Sequences: 438736
Number of extensions: 1082639
Number of successful extensions: 13626
Number of sequences better than 0.5: 99
Number of HSP's better than 0.5 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12649
Number of HSP's gapped (non-prelim): 928
length of query: 649
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 628
effective length of database: 2,791,206,460
effective search space: 1752877656880
effective search space used: 1752877656880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)