BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763158.2.1
(826 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU029514.1|AU029514 AU029514 Rice panicle shorter than 3... 46 0.030
gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3... 46 0.030
gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3... 46 0.030
gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (ja... 46 0.030
gb|AU092227.1|AU092227 AU092227 Rice callus Oryza sativa (j... 46 0.030
gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (j... 46 0.030
gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering s... 46 0.030
gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (jap... 46 0.030
gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sati... 46 0.030
gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA ... 46 0.030
gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germinati... 46 0.030
gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germinati... 46 0.030
gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germinati... 46 0.030
gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (j... 46 0.030
gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (j... 46 0.030
gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (j... 46 0.030
gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (j... 46 0.030
gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (j... 46 0.030
gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (j... 46 0.030
gb|CB668192.1|CB668192 OSJNEd15O19.r OSJNEd Oryza sativa (j... 46 0.030
gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (j... 46 0.030
gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (j... 46 0.030
gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda ph... 46 0.030
gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, co... 46 0.030
dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 ... 46 0.030
dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA... 46 0.030
gb|AACV01007733.1| Oryza sativa (japonica cultivar-group) c... 46 0.030
ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.030
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 46 0.030
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.030
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.030
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.030
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.030
gb|AC091670.7| Oryza sativa (japonica cultivar-group) chrom... 46 0.030
gb|AQ329836.1|AQ329836 nbxb0045H06r CUGI Rice BAC Library O... 44 0.12
gb|AC136377.4| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|AACV01023184.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
dbj|AP008246.1| Oryza sativa (japonica cultivar-group) geno... 44 0.12
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.12
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.12
>gb|AU029514.1|AU029514 AU029514 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31025_7Z, mRNA sequence
Length = 422
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 22 ggctacttcgcctggtctctcctggacaacttcga 56
>gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31058_1Z, mRNA sequence
Length = 394
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 85 ggctacttcgcctggtctctcctggacaacttcga 119
>gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31217_1Z, mRNA sequence
Length = 356
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 47 ggctacttcgcctggtctctcctggacaacttcga 81
>gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S3977_2Z, mRNA sequence
Length = 493
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 177 ggctacttcgcctggtctctcctggacaacttcga 211
>gb|AU092227.1|AU092227 AU092227 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11453, mRNA sequence
Length = 623
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 165 ggctacttcgcctggtctctcctggacaacttcga 199
>gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11496, mRNA sequence
Length = 705
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 190 ggctacttcgcctggtctctcctggacaacttcga 224
>gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1350, mRNA sequence
Length = 709
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 298 ggctacttcgcctggtctctcctggacaacttcga 332
>gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3421, mRNA sequence
Length = 716
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 302 ggctacttcgcctggtctctcctggacaacttcga 336
>gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S12223, mRNA sequence
Length = 372
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 58 ggctacttcgcctggtctctcctggacaacttcga 92
>gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030043000_PLATE_A11_81_084.ab1 similar to
beta-glucosidase (EC 3.2.1.21), chloroplast - rice, mRNA
sequence
Length = 600
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 161 ggctacttcgcctggtctctcctggacaacttcga 195
>gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 667
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 626 ggctacttcgcctggtctctcctggacaacttcga 660
>gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 679
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 627 ggctacttcgcctggtctctcctggacaacttcga 661
>gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 668
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 626 ggctacttcgcctggtctctcctggacaacttcga 660
>gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03L22 3', mRNA sequence
Length = 813
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 396 ggctacttcgcctggtctctcctggacaacttcga 362
>gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08C01 3', mRNA sequence
Length = 775
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 508 ggctacttcgcctggtctctcctggacaacttcga 474
>gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05K05 3', mRNA sequence
Length = 837
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 483 ggctacttcgcctggtctctcctggacaacttcga 449
>gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10A12 5', mRNA sequence
Length = 796
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 705 ggctacttcgcctggtctctcctggacaacttcga 739
>gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08N06 3', mRNA sequence
Length = 835
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 395 ggctacttcgcctggtctctcctggacaacttcga 361
>gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08O07 3', mRNA sequence
Length = 806
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 395 ggctacttcgcctggtctctcctggacaacttcga 361
>gb|CB668192.1|CB668192 OSJNEd15O19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15O19 3', mRNA sequence
Length = 877
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 493 ggctacttcgcctggtctctcctggacaacttcga 459
>gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16B19 3', mRNA sequence
Length = 835
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 395 ggctacttcgcctggtctctcctggacaacttcga 361
>gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10E15 3', mRNA sequence
Length = 828
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 388 ggctacttcgcctggtctctcctggacaacttcga 354
>gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-H19,
mRNA sequence
Length = 423
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 116 ggctacttcgcctggtctctcctggacaacttcga 150
>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds
Length = 1909
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 1472 ggctacttcgcctggtctctcctggacaacttcga 1506
>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full
insert sequence
Length = 1302
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 908 ggctacttcgcctggtctctcctggacaacttcga 942
>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full
insert sequence
Length = 1894
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 1467 ggctacttcgcctggtctctcctggacaacttcga 1501
>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full
insert sequence
Length = 1857
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 1463 ggctacttcgcctggtctctcctggacaacttcga 1497
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
sequence
Length = 133889
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 79157 ggctacttcgcctggtctctcctggacaacttcga 79191
>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full
insert sequence
Length = 1846
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 1464 ggctacttcgcctggtctctcctggacaacttcga 1498
>gb|AACV01007733.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007733, whole
genome shotgun sequence
Length = 4355
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 4017 ggctacttcgcctggtctctcctggacaacttcga 3983
>ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1849
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 1461 ggctacttcgcctggtctctcctggacaacttcga 1495
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 1251134 ggctacttcgcctggtctctcctggacaacttcga 1251100
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 1728241 ggctacttcgcctggtctctcctggacaacttcga 1728207
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 28994404 ggctacttcgcctggtctctcctggacaacttcga 28994370
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 28037193 ggctacttcgcctggtctctcctggacaacttcga 28037159
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 27945869 ggctacttcgcctggtctctcctggacaacttcga 27945835
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
map R2847, complete sequence
Length = 100918
Score = 46.1 bits (23), Expect = 0.030
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 444 ggctacttcgcttggtctctattggacaacttcga 478
||||||||||| |||||||| |||||||||||||
Sbjct: 81597 ggctacttcgcctggtctctcctggacaacttcga 81563
>gb|AQ329836.1|AQ329836 nbxb0045H06r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0045H06r, DNA sequence
Length = 765
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 137 gccagtgctcaacactgacgacgcat 162
||||||||||||| ||||||||||||
Sbjct: 211 gccagtgctcaaccctgacgacgcat 186
>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0028G07, complete sequence
Length = 157463
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 gccagtgctcaacactgacgacgcat 162
||||||||||||| ||||||||||||
Sbjct: 63541 gccagtgctcaaccctgacgacgcat 63566
>gb|AACV01023184.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023184, whole
genome shotgun sequence
Length = 28724
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 gccagtgctcaacactgacgacgcat 162
||||||||||||| ||||||||||||
Sbjct: 16935 gccagtgctcaaccctgacgacgcat 16960
>dbj|AP008246.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1642C07
Length = 206004
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 785 cgatttccccttttcagtatca 806
||||||||||||||||||||||
Sbjct: 12350 cgatttccccttttcagtatca 12329
>gb|CH401264.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000101
genomic scaffold, whole genome shotgun sequence
Length = 5106408
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 gccagtgctcaacactgacgacgcat 162
||||||||||||| ||||||||||||
Sbjct: 131815 gccagtgctcaaccctgacgacgcat 131840
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 gccagtgctcaacactgacgacgcat 162
||||||||||||| ||||||||||||
Sbjct: 14296797 gccagtgctcaaccctgacgacgcat 14296822
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 gccagtgctcaacactgacgacgcat 162
||||||||||||| ||||||||||||
Sbjct: 17469527 gccagtgctcaaccctgacgacgcat 17469552
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 gccagtgctcaacactgacgacgcat 162
||||||||||||| ||||||||||||
Sbjct: 17563237 gccagtgctcaaccctgacgacgcat 17563262
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 949,049
Number of Sequences: 438736
Number of extensions: 949049
Number of successful extensions: 3859
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3766
Number of HSP's gapped (non-prelim): 93
length of query: 826
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 805
effective length of database: 2,791,206,460
effective search space: 2246921200300
effective search space used: 2246921200300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)