BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763110.2.1
(541 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP004346.2| Oryza sativa (japonica cultivar-group) geno... 62 3e-007
gb|AACV01015820.1| Oryza sativa (japonica cultivar-group) c... 62 3e-007
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 62 3e-007
gb|CH401222.1| Oryza sativa (japonica cultivar-group) chrom... 62 3e-007
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 62 3e-007
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 62 3e-007
emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC O... 46 0.019
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 46 0.019
gb|AACV01025036.1| Oryza sativa (japonica cultivar-group) c... 46 0.019
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.019
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.019
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 46 0.019
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.019
>dbj|AP004346.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0656C04
Length = 143411
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 257 cctgccatcgccatgggtgtcgccaatgtggagcttgtcttggccaacctgttacattgc 316
|||| ||| ||||||||||| ||||||||||||||||| | ||||| ||||| ||||
Sbjct: 50356 cctggcattgccatgggtgtggccaatgtggagcttgtagtagccaatctgttgtattgt 50297
Query: 317 tttgattggca 327
|||||||||||
Sbjct: 50296 tttgattggca 50286
Score = 56.0 bits (28), Expect = 2e-005
Identities = 144/180 (80%), Gaps = 2/180 (1%)
Strand = Plus / Minus
Query: 217 ttttgagctcctcccgttcggctcaggacgaaggtcatgccctgccatcgccatgggtgt 276
|||||||||||| || || || ||||| |||||| || |||| ||| || ||||||||
Sbjct: 59198 ttttgagctccttccttttgggtcagggcgaaggatttgtcctggcattgctatgggtgt 59139
Query: 277 cgccaatgtggagcttgtcttggccaacctgttacattgctttgattggcagctccctga 336
||||||||||||||||| | ||||| ||||| |||| ||| ||||||| || || ||
Sbjct: 59138 ggccaatgtggagcttgtagtagccaatctgttgtattgttttaattggcaacttcc-ga 59080
Query: 337 aggg-atggtggaggaggacatcgatatggaagaaacagggcagcttgcttttaggaaga 395
|||| ||| || || || || |||||||| |||| ||| |||||||||||| ||||||
Sbjct: 59079 agggaatgaaagaagaagatattgatatggacgaaataggccagcttgcttttcggaaga 59020
>gb|AACV01015820.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015820, whole
genome shotgun sequence
Length = 27709
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 257 cctgccatcgccatgggtgtcgccaatgtggagcttgtcttggccaacctgttacattgc 316
|||| ||| ||||||||||| ||||||||||||||||| | ||||| ||||| ||||
Sbjct: 3153 cctggcattgccatgggtgtggccaatgtggagcttgtagtagccaatctgttgtattgt 3094
Query: 317 tttgattggca 327
|||||||||||
Sbjct: 3093 tttgattggca 3083
Score = 56.0 bits (28), Expect = 2e-005
Identities = 144/180 (80%), Gaps = 2/180 (1%)
Strand = Plus / Minus
Query: 217 ttttgagctcctcccgttcggctcaggacgaaggtcatgccctgccatcgccatgggtgt 276
|||||||||||| || || || ||||| |||||| || |||| ||| || ||||||||
Sbjct: 11994 ttttgagctccttccttttgggtcagggcgaaggatttgtcctggcattgctatgggtgt 11935
Query: 277 cgccaatgtggagcttgtcttggccaacctgttacattgctttgattggcagctccctga 336
||||||||||||||||| | ||||| ||||| |||| ||| ||||||| || || ||
Sbjct: 11934 ggccaatgtggagcttgtagtagccaatctgttgtattgttttaattggcaacttcc-ga 11876
Query: 337 aggg-atggtggaggaggacatcgatatggaagaaacagggcagcttgcttttaggaaga 395
|||| ||| || || || || |||||||| |||| ||| |||||||||||| ||||||
Sbjct: 11875 agggaatgaaagaagaagatattgatatggacgaaataggccagcttgcttttcggaaga 11816
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 257 cctgccatcgccatgggtgtcgccaatgtggagcttgtcttggccaacctgttacattgc 316
|||| ||| ||||||||||| ||||||||||||||||| | ||||| ||||| ||||
Sbjct: 11294100 cctggcattgccatgggtgtggccaatgtggagcttgtagtagccaatctgttgtattgt 11294041
Query: 317 tttgattggca 327
|||||||||||
Sbjct: 11294040 tttgattggca 11294030
Score = 56.0 bits (28), Expect = 2e-005
Identities = 144/180 (80%), Gaps = 2/180 (1%)
Strand = Plus / Minus
Query: 217 ttttgagctcctcccgttcggctcaggacgaaggtcatgccctgccatcgccatgggtgt 276
|||||||||||| || || || ||||| |||||| || |||| ||| || ||||||||
Sbjct: 11302942 ttttgagctccttccttttgggtcagggcgaaggatttgtcctggcattgctatgggtgt 11302883
Query: 277 cgccaatgtggagcttgtcttggccaacctgttacattgctttgattggcagctccctga 336
||||||||||||||||| | ||||| ||||| |||| ||| ||||||| || || ||
Sbjct: 11302882 ggccaatgtggagcttgtagtagccaatctgttgtattgttttaattggcaacttcc-ga 11302824
Query: 337 aggg-atggtggaggaggacatcgatatggaagaaacagggcagcttgcttttaggaaga 395
|||| ||| || || || || |||||||| |||| ||| |||||||||||| ||||||
Sbjct: 11302823 agggaatgaaagaagaagatattgatatggacgaaataggccagcttgcttttcggaaga 11302764
>gb|CH401222.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000059 genomic
scaffold, whole genome shotgun sequence
Length = 1879464
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 257 cctgccatcgccatgggtgtcgccaatgtggagcttgtcttggccaacctgttacattgc 316
|||| ||| ||||||||||| ||||||||||||||||| | ||||| ||||| ||||
Sbjct: 1612664 cctggcattgccatgggtgtggccaatgtggagcttgtagtagccaatctgttgtattgt 1612605
Query: 317 tttgattggca 327
|||||||||||
Sbjct: 1612604 tttgattggca 1612594
Score = 56.0 bits (28), Expect = 2e-005
Identities = 144/180 (80%), Gaps = 2/180 (1%)
Strand = Plus / Minus
Query: 217 ttttgagctcctcccgttcggctcaggacgaaggtcatgccctgccatcgccatgggtgt 276
|||||||||||| || || || ||||| |||||| || |||| ||| || ||||||||
Sbjct: 1621505 ttttgagctccttccttttgggtcagggcgaaggatttgtcctggcattgctatgggtgt 1621446
Query: 277 cgccaatgtggagcttgtcttggccaacctgttacattgctttgattggcagctccctga 336
||||||||||||||||| | ||||| ||||| |||| ||| ||||||| || || ||
Sbjct: 1621445 ggccaatgtggagcttgtagtagccaatctgttgtattgttttaattggcaacttcc-ga 1621387
Query: 337 aggg-atggtggaggaggacatcgatatggaagaaacagggcagcttgcttttaggaaga 395
|||| ||| || || || || |||||||| |||| ||| |||||||||||| ||||||
Sbjct: 1621386 agggaatgaaagaagaagatattgatatggacgaaataggccagcttgcttttcggaaga 1621327
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 257 cctgccatcgccatgggtgtcgccaatgtggagcttgtcttggccaacctgttacattgc 316
|||| ||| ||||||||||| ||||||||||||||||| | ||||| ||||| ||||
Sbjct: 11166577 cctggcattgccatgggtgtggccaatgtggagcttgtagtagccaatctgttgtattgt 11166518
Query: 317 tttgattggca 327
|||||||||||
Sbjct: 11166517 tttgattggca 11166507
Score = 56.0 bits (28), Expect = 2e-005
Identities = 144/180 (80%), Gaps = 2/180 (1%)
Strand = Plus / Minus
Query: 217 ttttgagctcctcccgttcggctcaggacgaaggtcatgccctgccatcgccatgggtgt 276
|||||||||||| || || || ||||| |||||| || |||| ||| || ||||||||
Sbjct: 11175418 ttttgagctccttccttttgggtcagggcgaaggatttgtcctggcattgctatgggtgt 11175359
Query: 277 cgccaatgtggagcttgtcttggccaacctgttacattgctttgattggcagctccctga 336
||||||||||||||||| | ||||| ||||| |||| ||| ||||||| || || ||
Sbjct: 11175358 ggccaatgtggagcttgtagtagccaatctgttgtattgttttaattggcaacttcc-ga 11175300
Query: 337 aggg-atggtggaggaggacatcgatatggaagaaacagggcagcttgcttttaggaaga 395
|||| ||| || || || || |||||||| |||| ||| |||||||||||| ||||||
Sbjct: 11175299 agggaatgaaagaagaagatattgatatggacgaaataggccagcttgcttttcggaaga 11175240
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 257 cctgccatcgccatgggtgtcgccaatgtggagcttgtcttggccaacctgttacattgc 316
|||| ||| ||||||||||| ||||||||||||||||| | ||||| ||||| ||||
Sbjct: 11349845 cctggcattgccatgggtgtggccaatgtggagcttgtagtagccaatctgttgtattgt 11349786
Query: 317 tttgattggca 327
|||||||||||
Sbjct: 11349785 tttgattggca 11349775
Score = 56.0 bits (28), Expect = 2e-005
Identities = 144/180 (80%), Gaps = 2/180 (1%)
Strand = Plus / Minus
Query: 217 ttttgagctcctcccgttcggctcaggacgaaggtcatgccctgccatcgccatgggtgt 276
|||||||||||| || || || ||||| |||||| || |||| ||| || ||||||||
Sbjct: 11358687 ttttgagctccttccttttgggtcagggcgaaggatttgtcctggcattgctatgggtgt 11358628
Query: 277 cgccaatgtggagcttgtcttggccaacctgttacattgctttgattggcagctccctga 336
||||||||||||||||| | ||||| ||||| |||| ||| ||||||| || || ||
Sbjct: 11358627 ggccaatgtggagcttgtagtagccaatctgttgtattgttttaattggcaacttcc-ga 11358569
Query: 337 aggg-atggtggaggaggacatcgatatggaagaaacagggcagcttgcttttaggaaga 395
|||| ||| || || || || |||||||| |||| ||| |||||||||||| ||||||
Sbjct: 11358568 agggaatgaaagaagaagatattgatatggacgaaataggccagcttgcttttcggaaga 11358509
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 165433
Score = 46.1 bits (23), Expect = 0.019
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 158 ccggaggagttcagtcccgagaggttcgagg 188
||||||||||||| ||||||||||||||||
Sbjct: 137128 ccggaggagttcaaccccgagaggttcgagg 137158
>ref|NT_079837.2| Oryza sativa (japonica cultivar-group)
Length = 3671013
Score = 46.1 bits (23), Expect = 0.019
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 158 ccggaggagttcagtcccgagaggttcgagg 188
||||||||||||| ||||||||||||||||
Sbjct: 2199889 ccggaggagttcaaccccgagaggttcgagg 2199859
>gb|AACV01025036.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025036, whole
genome shotgun sequence
Length = 29860
Score = 46.1 bits (23), Expect = 0.019
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 158 ccggaggagttcagtcccgagaggttcgagg 188
||||||||||||| ||||||||||||||||
Sbjct: 4117 ccggaggagttcaaccccgagaggttcgagg 4087
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118 genomic
scaffold, whole genome shotgun sequence
Length = 3660441
Score = 46.1 bits (23), Expect = 0.019
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 158 ccggaggagttcagtcccgagaggttcgagg 188
||||||||||||| ||||||||||||||||
Sbjct: 1018068 ccggaggagttcaaccccgagaggttcgagg 1018038
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 46.1 bits (23), Expect = 0.019
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 158 ccggaggagttcagtcccgagaggttcgagg 188
||||||||||||| ||||||||||||||||
Sbjct: 16541173 ccggaggagttcaaccccgagaggttcgagg 16541143
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 46.1 bits (23), Expect = 0.019
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 158 ccggaggagttcagtcccgagaggttcgagg 188
||||||||||||| ||||||||||||||||
Sbjct: 19890132 ccggaggagttcaaccccgagaggttcgagg 19890102
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 46.1 bits (23), Expect = 0.019
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 158 ccggaggagttcagtcccgagaggttcgagg 188
||||||||||||| ||||||||||||||||
Sbjct: 19816346 ccggaggagttcaaccccgagaggttcgagg 19816316
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 739,998
Number of Sequences: 438736
Number of extensions: 739998
Number of successful extensions: 15210
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15031
Number of HSP's gapped (non-prelim): 179
length of query: 541
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 520
effective length of database: 2,791,206,460
effective search space: 1451427359200
effective search space used: 1451427359200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)