BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762998.2.1
(1036 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbar... 505 e-140
gb|AACV01006159.1| Oryza sativa (japonica cultivar-group) c... 505 e-140
ref|NT_107190.1| Oryza sativa (japonica cultivar-group) 505 e-140
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 505 e-140
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 505 e-140
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 505 e-140
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 505 e-140
gb|AU055885.1|AU055885 AU055885 Oryza sativa mature leaf Ni... 444 e-122
gb|AU055884.1|AU055884 AU055884 Oryza sativa mature leaf Ni... 319 2e-084
gb|CB684001.1|CB684001 OSJNEf13B21.r OSJNEf Oryza sativa (j... 44 0.15
gb|CF303618.1|CF303618 ABF1--02-M06.g1 ABF3-overexpressing ... 44 0.15
gb|CF304331.1|CF304331 ABF1--04-K24.g1 ABF3-overexpressing ... 44 0.15
dbj|AK099998.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
dbj|AK100552.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
gb|AC105731.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|AACV01006033.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 44 0.15
>gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0049C20, from chromosome 3, complete sequence
Length = 136098
Score = 505 bits (255), Expect = e-140
Identities = 552/651 (84%)
Strand = Plus / Minus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||| | ||||| ||||| || |||||||||| || || |||||||||||||| ||
Sbjct: 85442 acaaagttgatcccagcaatcaatgaaaagaaccgatctaggtggccttcattcaggtta 85383
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
|| ||||||||||||||||| ||||| |||||||||| || |||||||| || | ||||
Sbjct: 85382 tctgggatccatccaggatcccctccttgagttgtaaaatatgacaccaaggttaatatg 85323
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
|| ||||||| |||| | |||||||||||||| | ||| |||| ||||||||| ||||||
Sbjct: 85322 attgagcttaaatagctccccagtgagactgttacaagcgcaaatgcactacacaaactc 85263
Query: 443 ctcatggcatctggggcctgatcgtaaaagaactcaacttgaccaatacaagtaaacacc 502
||||||||||| ||||| | || ||| ||||||||||| ||||| || || ||| |||
Sbjct: 85262 ctcatggcatcaggggcttcattgtagaagaactcaacctgacctatggcagcaaagacc 85203
Query: 503 tcagcagcgcccaccaagaaatattgtggtatttgccaaagaatgctcattggaacagca 562
||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 85202 tcagcagcgccaaccaagaaatactgcggtatttgccaaagaatgctcatcggaacagca 85143
Query: 563 gccttctcatgaatgagaccttcagacctggcaatctctaaacgcttcaactcaactaga 622
| | ||||||||| ||||||||||| ||||| ||| |||||||| |||||||||| |||
Sbjct: 85142 acatcctcatgaataagaccttcagatctggcgatccctaaacgcctcaactcaacaaga 85083
Query: 623 gctgcagataccatcgcgagaatggacaggactaatccaattcccatccgctgtagctca 682
|||||||||| ||| || || ||||| ||| ||||||| ||||| |||||||||| ||||
Sbjct: 85082 gctgcagatagcattgcaaggatggagagggctaatccgattccaatccgctgtaactca 85023
Query: 683 gaaaaacccttctcccttccagtgaattttctagctagtggcaccaggatgcggtcatag 742
|| ||||||||||||||||||||||| |||||||||| |||||| || | ||| ||||
Sbjct: 85022 gagaaacccttctcccttccagtgaactttctagctattggcacaagcacacggccataa 84963
Query: 743 agtgggacccacatgatgacgctgattacatcaaaagtggagagagatgcaggaggaatg 802
| || | ||| |||||||| ||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 84962 aacggaatccagatgatgacactgatgacatcaaaagttgagagggatgcaggagggaca 84903
Query: 803 ttgaaagacccaatgcgcttgtcaagaaccatgccctgctctatgaacatggaagagttt 862
||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 84902 atgaaagatccaactcgcttgtcaagaaccattccctgctctatgaacatagaagagttg 84843
Query: 863 tgggcataaacagcactgaatatgatagcagtagcccaaatgggaaacatt 913
|| ||||| || || ||||||| |||| ||| ||||||||||||||||||
Sbjct: 84842 tgagcatacaccgcgttgaatataatagtagtggcccaaatgggaaacatt 84792
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 77091 cggtcaagatggccttcattcaagttatcagggatcca 77054
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 535 ttgccaaagaatgctcattggaacag 560
|||||||||||||||||| |||||||
Sbjct: 76852 ttgccaaagaatgctcatgggaacag 76827
>gb|AACV01006159.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006159, whole
genome shotgun sequence
Length = 20694
Score = 505 bits (255), Expect = e-140
Identities = 552/651 (84%)
Strand = Plus / Plus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||| | ||||| ||||| || |||||||||| || || |||||||||||||| ||
Sbjct: 8473 acaaagttgatcccagcaatcaatgaaaagaaccgatctaggtggccttcattcaggtta 8532
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
|| ||||||||||||||||| ||||| |||||||||| || |||||||| || | ||||
Sbjct: 8533 tctgggatccatccaggatcccctccttgagttgtaaaatatgacaccaaggttaatatg 8592
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
|| ||||||| |||| | |||||||||||||| | ||| |||| ||||||||| ||||||
Sbjct: 8593 attgagcttaaatagctccccagtgagactgttacaagcgcaaatgcactacacaaactc 8652
Query: 443 ctcatggcatctggggcctgatcgtaaaagaactcaacttgaccaatacaagtaaacacc 502
||||||||||| ||||| | || ||| ||||||||||| ||||| || || ||| |||
Sbjct: 8653 ctcatggcatcaggggcttcattgtagaagaactcaacctgacctatggcagcaaagacc 8712
Query: 503 tcagcagcgcccaccaagaaatattgtggtatttgccaaagaatgctcattggaacagca 562
||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 8713 tcagcagcgccaaccaagaaatactgcggtatttgccaaagaatgctcatcggaacagca 8772
Query: 563 gccttctcatgaatgagaccttcagacctggcaatctctaaacgcttcaactcaactaga 622
| | ||||||||| ||||||||||| ||||| ||| |||||||| |||||||||| |||
Sbjct: 8773 acatcctcatgaataagaccttcagatctggcgatccctaaacgcctcaactcaacaaga 8832
Query: 623 gctgcagataccatcgcgagaatggacaggactaatccaattcccatccgctgtagctca 682
|||||||||| ||| || || ||||| ||| ||||||| ||||| |||||||||| ||||
Sbjct: 8833 gctgcagatagcattgcaaggatggagagggctaatccgattccaatccgctgtaactca 8892
Query: 683 gaaaaacccttctcccttccagtgaattttctagctagtggcaccaggatgcggtcatag 742
|| ||||||||||||||||||||||| |||||||||| |||||| || | ||| ||||
Sbjct: 8893 gagaaacccttctcccttccagtgaactttctagctattggcacaagcacacggccataa 8952
Query: 743 agtgggacccacatgatgacgctgattacatcaaaagtggagagagatgcaggaggaatg 802
| || | ||| |||||||| ||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 8953 aacggaatccagatgatgacactgatgacatcaaaagttgagagggatgcaggagggaca 9012
Query: 803 ttgaaagacccaatgcgcttgtcaagaaccatgccctgctctatgaacatggaagagttt 862
||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 9013 atgaaagatccaactcgcttgtcaagaaccattccctgctctatgaacatagaagagttg 9072
Query: 863 tgggcataaacagcactgaatatgatagcagtagcccaaatgggaaacatt 913
|| ||||| || || ||||||| |||| ||| ||||||||||||||||||
Sbjct: 9073 tgagcatacaccgcgttgaatataatagtagtggcccaaatgggaaacatt 9123
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 535 ttgccaaagaatgctcattggaacag 560
|||||||||||||||||| |||||||
Sbjct: 17061 ttgccaaagaatgctcatgggaacag 17086
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 16822 cggtcaagatggccttcattcaagttatcagggatcca 16859
>ref|NT_107190.1| Oryza sativa (japonica cultivar-group)
Length = 840383
Score = 505 bits (255), Expect = e-140
Identities = 552/651 (84%)
Strand = Plus / Plus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||| | ||||| ||||| || |||||||||| || || |||||||||||||| ||
Sbjct: 364095 acaaagttgatcccagcaatcaatgaaaagaaccgatctaggtggccttcattcaggtta 364154
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
|| ||||||||||||||||| ||||| |||||||||| || |||||||| || | ||||
Sbjct: 364155 tctgggatccatccaggatcccctccttgagttgtaaaatatgacaccaaggttaatatg 364214
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
|| ||||||| |||| | |||||||||||||| | ||| |||| ||||||||| ||||||
Sbjct: 364215 attgagcttaaatagctccccagtgagactgttacaagcgcaaatgcactacacaaactc 364274
Query: 443 ctcatggcatctggggcctgatcgtaaaagaactcaacttgaccaatacaagtaaacacc 502
||||||||||| ||||| | || ||| ||||||||||| ||||| || || ||| |||
Sbjct: 364275 ctcatggcatcaggggcttcattgtagaagaactcaacctgacctatggcagcaaagacc 364334
Query: 503 tcagcagcgcccaccaagaaatattgtggtatttgccaaagaatgctcattggaacagca 562
||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 364335 tcagcagcgccaaccaagaaatactgcggtatttgccaaagaatgctcatcggaacagca 364394
Query: 563 gccttctcatgaatgagaccttcagacctggcaatctctaaacgcttcaactcaactaga 622
| | ||||||||| ||||||||||| ||||| ||| |||||||| |||||||||| |||
Sbjct: 364395 acatcctcatgaataagaccttcagatctggcgatccctaaacgcctcaactcaacaaga 364454
Query: 623 gctgcagataccatcgcgagaatggacaggactaatccaattcccatccgctgtagctca 682
|||||||||| ||| || || ||||| ||| ||||||| ||||| |||||||||| ||||
Sbjct: 364455 gctgcagatagcattgcaaggatggagagggctaatccgattccaatccgctgtaactca 364514
Query: 683 gaaaaacccttctcccttccagtgaattttctagctagtggcaccaggatgcggtcatag 742
|| ||||||||||||||||||||||| |||||||||| |||||| || | ||| ||||
Sbjct: 364515 gagaaacccttctcccttccagtgaactttctagctattggcacaagcacacggccataa 364574
Query: 743 agtgggacccacatgatgacgctgattacatcaaaagtggagagagatgcaggaggaatg 802
| || | ||| |||||||| ||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 364575 aacggaatccagatgatgacactgatgacatcaaaagttgagagggatgcaggagggaca 364634
Query: 803 ttgaaagacccaatgcgcttgtcaagaaccatgccctgctctatgaacatggaagagttt 862
||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 364635 atgaaagatccaactcgcttgtcaagaaccattccctgctctatgaacatagaagagttg 364694
Query: 863 tgggcataaacagcactgaatatgatagcagtagcccaaatgggaaacatt 913
|| ||||| || || ||||||| |||| ||| ||||||||||||||||||
Sbjct: 364695 tgagcatacaccgcgttgaatataatagtagtggcccaaatgggaaacatt 364745
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 535 ttgccaaagaatgctcattggaacag 560
|||||||||||||||||| |||||||
Sbjct: 372685 ttgccaaagaatgctcatgggaacag 372710
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 372446 cggtcaagatggccttcattcaagttatcagggatcca 372483
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 505 bits (255), Expect = e-140
Identities = 552/651 (84%)
Strand = Plus / Plus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||| | ||||| ||||| || |||||||||| || || |||||||||||||| ||
Sbjct: 7119758 acaaagttgatcccagcaatcaatgaaaagaaccgatctaggtggccttcattcaggtta 7119817
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
|| ||||||||||||||||| ||||| |||||||||| || |||||||| || | ||||
Sbjct: 7119818 tctgggatccatccaggatcccctccttgagttgtaaaatatgacaccaaggttaatatg 7119877
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
|| ||||||| |||| | |||||||||||||| | ||| |||| ||||||||| ||||||
Sbjct: 7119878 attgagcttaaatagctccccagtgagactgttacaagcgcaaatgcactacacaaactc 7119937
Query: 443 ctcatggcatctggggcctgatcgtaaaagaactcaacttgaccaatacaagtaaacacc 502
||||||||||| ||||| | || ||| ||||||||||| ||||| || || ||| |||
Sbjct: 7119938 ctcatggcatcaggggcttcattgtagaagaactcaacctgacctatggcagcaaagacc 7119997
Query: 503 tcagcagcgcccaccaagaaatattgtggtatttgccaaagaatgctcattggaacagca 562
||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 7119998 tcagcagcgccaaccaagaaatactgcggtatttgccaaagaatgctcatcggaacagca 7120057
Query: 563 gccttctcatgaatgagaccttcagacctggcaatctctaaacgcttcaactcaactaga 622
| | ||||||||| ||||||||||| ||||| ||| |||||||| |||||||||| |||
Sbjct: 7120058 acatcctcatgaataagaccttcagatctggcgatccctaaacgcctcaactcaacaaga 7120117
Query: 623 gctgcagataccatcgcgagaatggacaggactaatccaattcccatccgctgtagctca 682
|||||||||| ||| || || ||||| ||| ||||||| ||||| |||||||||| ||||
Sbjct: 7120118 gctgcagatagcattgcaaggatggagagggctaatccgattccaatccgctgtaactca 7120177
Query: 683 gaaaaacccttctcccttccagtgaattttctagctagtggcaccaggatgcggtcatag 742
|| ||||||||||||||||||||||| |||||||||| |||||| || | ||| ||||
Sbjct: 7120178 gagaaacccttctcccttccagtgaactttctagctattggcacaagcacacggccataa 7120237
Query: 743 agtgggacccacatgatgacgctgattacatcaaaagtggagagagatgcaggaggaatg 802
| || | ||| |||||||| ||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 7120238 aacggaatccagatgatgacactgatgacatcaaaagttgagagggatgcaggagggaca 7120297
Query: 803 ttgaaagacccaatgcgcttgtcaagaaccatgccctgctctatgaacatggaagagttt 862
||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 7120298 atgaaagatccaactcgcttgtcaagaaccattccctgctctatgaacatagaagagttg 7120357
Query: 863 tgggcataaacagcactgaatatgatagcagtagcccaaatgggaaacatt 913
|| ||||| || || ||||||| |||| ||| ||||||||||||||||||
Sbjct: 7120358 tgagcatacaccgcgttgaatataatagtagtggcccaaatgggaaacatt 7120408
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 535 ttgccaaagaatgctcattggaacag 560
|||||||||||||||||| |||||||
Sbjct: 7128346 ttgccaaagaatgctcatgggaacag 7128371
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 7128107 cggtcaagatggccttcattcaagttatcagggatcca 7128144
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 4852141 cggtcaagatggccttcattcaagttatcagggatcca 4852104
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 505 bits (255), Expect = e-140
Identities = 552/651 (84%)
Strand = Plus / Plus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||| | ||||| ||||| || |||||||||| || || |||||||||||||| ||
Sbjct: 7312120 acaaagttgatcccagcaatcaatgaaaagaaccgatctaggtggccttcattcaggtta 7312179
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
|| ||||||||||||||||| ||||| |||||||||| || |||||||| || | ||||
Sbjct: 7312180 tctgggatccatccaggatcccctccttgagttgtaaaatatgacaccaaggttaatatg 7312239
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
|| ||||||| |||| | |||||||||||||| | ||| |||| ||||||||| ||||||
Sbjct: 7312240 attgagcttaaatagctccccagtgagactgttacaagcgcaaatgcactacacaaactc 7312299
Query: 443 ctcatggcatctggggcctgatcgtaaaagaactcaacttgaccaatacaagtaaacacc 502
||||||||||| ||||| | || ||| ||||||||||| ||||| || || ||| |||
Sbjct: 7312300 ctcatggcatcaggggcttcattgtagaagaactcaacctgacctatggcagcaaagacc 7312359
Query: 503 tcagcagcgcccaccaagaaatattgtggtatttgccaaagaatgctcattggaacagca 562
||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 7312360 tcagcagcgccaaccaagaaatactgcggtatttgccaaagaatgctcatcggaacagca 7312419
Query: 563 gccttctcatgaatgagaccttcagacctggcaatctctaaacgcttcaactcaactaga 622
| | ||||||||| ||||||||||| ||||| ||| |||||||| |||||||||| |||
Sbjct: 7312420 acatcctcatgaataagaccttcagatctggcgatccctaaacgcctcaactcaacaaga 7312479
Query: 623 gctgcagataccatcgcgagaatggacaggactaatccaattcccatccgctgtagctca 682
|||||||||| ||| || || ||||| ||| ||||||| ||||| |||||||||| ||||
Sbjct: 7312480 gctgcagatagcattgcaaggatggagagggctaatccgattccaatccgctgtaactca 7312539
Query: 683 gaaaaacccttctcccttccagtgaattttctagctagtggcaccaggatgcggtcatag 742
|| ||||||||||||||||||||||| |||||||||| |||||| || | ||| ||||
Sbjct: 7312540 gagaaacccttctcccttccagtgaactttctagctattggcacaagcacacggccataa 7312599
Query: 743 agtgggacccacatgatgacgctgattacatcaaaagtggagagagatgcaggaggaatg 802
| || | ||| |||||||| ||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 7312600 aacggaatccagatgatgacactgatgacatcaaaagttgagagggatgcaggagggaca 7312659
Query: 803 ttgaaagacccaatgcgcttgtcaagaaccatgccctgctctatgaacatggaagagttt 862
||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 7312660 atgaaagatccaactcgcttgtcaagaaccattccctgctctatgaacatagaagagttg 7312719
Query: 863 tgggcataaacagcactgaatatgatagcagtagcccaaatgggaaacatt 913
|| ||||| || || ||||||| |||| ||| ||||||||||||||||||
Sbjct: 7312720 tgagcatacaccgcgttgaatataatagtagtggcccaaatgggaaacatt 7312770
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 535 ttgccaaagaatgctcattggaacag 560
|||||||||||||||||| |||||||
Sbjct: 7320708 ttgccaaagaatgctcatgggaacag 7320733
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 7320469 cggtcaagatggccttcattcaagttatcagggatcca 7320506
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 5044503 cggtcaagatggccttcattcaagttatcagggatcca 5044466
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 505 bits (255), Expect = e-140
Identities = 552/651 (84%)
Strand = Plus / Plus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||| | ||||| ||||| || |||||||||| || || |||||||||||||| ||
Sbjct: 7106791 acaaagttgatcccagcaatcaatgaaaagaaccgatctaggtggccttcattcaggtta 7106850
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
|| ||||||||||||||||| ||||| |||||||||| || |||||||| || | ||||
Sbjct: 7106851 tctgggatccatccaggatcccctccttgagttgtaaaatatgacaccaaggttaatatg 7106910
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
|| ||||||| |||| | |||||||||||||| | ||| |||| ||||||||| ||||||
Sbjct: 7106911 attgagcttaaatagctccccagtgagactgttacaagcgcaaatgcactacacaaactc 7106970
Query: 443 ctcatggcatctggggcctgatcgtaaaagaactcaacttgaccaatacaagtaaacacc 502
||||||||||| ||||| | || ||| ||||||||||| ||||| || || ||| |||
Sbjct: 7106971 ctcatggcatcaggggcttcattgtagaagaactcaacctgacctatggcagcaaagacc 7107030
Query: 503 tcagcagcgcccaccaagaaatattgtggtatttgccaaagaatgctcattggaacagca 562
||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 7107031 tcagcagcgccaaccaagaaatactgcggtatttgccaaagaatgctcatcggaacagca 7107090
Query: 563 gccttctcatgaatgagaccttcagacctggcaatctctaaacgcttcaactcaactaga 622
| | ||||||||| ||||||||||| ||||| ||| |||||||| |||||||||| |||
Sbjct: 7107091 acatcctcatgaataagaccttcagatctggcgatccctaaacgcctcaactcaacaaga 7107150
Query: 623 gctgcagataccatcgcgagaatggacaggactaatccaattcccatccgctgtagctca 682
|||||||||| ||| || || ||||| ||| ||||||| ||||| |||||||||| ||||
Sbjct: 7107151 gctgcagatagcattgcaaggatggagagggctaatccgattccaatccgctgtaactca 7107210
Query: 683 gaaaaacccttctcccttccagtgaattttctagctagtggcaccaggatgcggtcatag 742
|| ||||||||||||||||||||||| |||||||||| |||||| || | ||| ||||
Sbjct: 7107211 gagaaacccttctcccttccagtgaactttctagctattggcacaagcacacggccataa 7107270
Query: 743 agtgggacccacatgatgacgctgattacatcaaaagtggagagagatgcaggaggaatg 802
| || | ||| |||||||| ||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 7107271 aacggaatccagatgatgacactgatgacatcaaaagttgagagggatgcaggagggaca 7107330
Query: 803 ttgaaagacccaatgcgcttgtcaagaaccatgccctgctctatgaacatggaagagttt 862
||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 7107331 atgaaagatccaactcgcttgtcaagaaccattccctgctctatgaacatagaagagttg 7107390
Query: 863 tgggcataaacagcactgaatatgatagcagtagcccaaatgggaaacatt 913
|| ||||| || || ||||||| |||| ||| ||||||||||||||||||
Sbjct: 7107391 tgagcatacaccgcgttgaatataatagtagtggcccaaatgggaaacatt 7107441
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 535 ttgccaaagaatgctcattggaacag 560
|||||||||||||||||| |||||||
Sbjct: 7115381 ttgccaaagaatgctcatgggaacag 7115406
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 7115142 cggtcaagatggccttcattcaagttatcagggatcca 7115179
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 4841208 cggtcaagatggccttcattcaagttatcagggatcca 4841171
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 505 bits (255), Expect = e-140
Identities = 552/651 (84%)
Strand = Plus / Plus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||| | ||||| ||||| || |||||||||| || || |||||||||||||| ||
Sbjct: 7108896 acaaagttgatcccagcaatcaatgaaaagaaccgatctaggtggccttcattcaggtta 7108955
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
|| ||||||||||||||||| ||||| |||||||||| || |||||||| || | ||||
Sbjct: 7108956 tctgggatccatccaggatcccctccttgagttgtaaaatatgacaccaaggttaatatg 7109015
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
|| ||||||| |||| | |||||||||||||| | ||| |||| ||||||||| ||||||
Sbjct: 7109016 attgagcttaaatagctccccagtgagactgttacaagcgcaaatgcactacacaaactc 7109075
Query: 443 ctcatggcatctggggcctgatcgtaaaagaactcaacttgaccaatacaagtaaacacc 502
||||||||||| ||||| | || ||| ||||||||||| ||||| || || ||| |||
Sbjct: 7109076 ctcatggcatcaggggcttcattgtagaagaactcaacctgacctatggcagcaaagacc 7109135
Query: 503 tcagcagcgcccaccaagaaatattgtggtatttgccaaagaatgctcattggaacagca 562
||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 7109136 tcagcagcgccaaccaagaaatactgcggtatttgccaaagaatgctcatcggaacagca 7109195
Query: 563 gccttctcatgaatgagaccttcagacctggcaatctctaaacgcttcaactcaactaga 622
| | ||||||||| ||||||||||| ||||| ||| |||||||| |||||||||| |||
Sbjct: 7109196 acatcctcatgaataagaccttcagatctggcgatccctaaacgcctcaactcaacaaga 7109255
Query: 623 gctgcagataccatcgcgagaatggacaggactaatccaattcccatccgctgtagctca 682
|||||||||| ||| || || ||||| ||| ||||||| ||||| |||||||||| ||||
Sbjct: 7109256 gctgcagatagcattgcaaggatggagagggctaatccgattccaatccgctgtaactca 7109315
Query: 683 gaaaaacccttctcccttccagtgaattttctagctagtggcaccaggatgcggtcatag 742
|| ||||||||||||||||||||||| |||||||||| |||||| || | ||| ||||
Sbjct: 7109316 gagaaacccttctcccttccagtgaactttctagctattggcacaagcacacggccataa 7109375
Query: 743 agtgggacccacatgatgacgctgattacatcaaaagtggagagagatgcaggaggaatg 802
| || | ||| |||||||| ||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 7109376 aacggaatccagatgatgacactgatgacatcaaaagttgagagggatgcaggagggaca 7109435
Query: 803 ttgaaagacccaatgcgcttgtcaagaaccatgccctgctctatgaacatggaagagttt 862
||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 7109436 atgaaagatccaactcgcttgtcaagaaccattccctgctctatgaacatagaagagttg 7109495
Query: 863 tgggcataaacagcactgaatatgatagcagtagcccaaatgggaaacatt 913
|| ||||| || || ||||||| |||| ||| ||||||||||||||||||
Sbjct: 7109496 tgagcatacaccgcgttgaatataatagtagtggcccaaatgggaaacatt 7109546
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 535 ttgccaaagaatgctcattggaacag 560
|||||||||||||||||| |||||||
Sbjct: 7117486 ttgccaaagaatgctcatgggaacag 7117511
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 7117247 cggtcaagatggccttcattcaagttatcagggatcca 7117284
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 4841993 cggtcaagatggccttcattcaagttatcagggatcca 4841956
>gb|AU055885.1|AU055885 AU055885 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S20126_2Z, mRNA sequence
Length = 813
Score = 444 bits (224), Expect = e-122
Identities = 513/608 (84%), Gaps = 1/608 (0%)
Strand = Plus / Minus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||| | ||||| ||||| || |||||||||| || || |||||||||||||| ||
Sbjct: 634 acaaagttgatcccagcaatcaatgaaaagaaccgatctaggtggccttcattcaggtta 575
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
|| ||||||||||||||||| ||||| |||||||||| || |||||||| || | ||||
Sbjct: 574 tctgggatccatccaggatcccctccttgagttgtaaaatatgacaccaaggttaatatg 515
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
|| ||||||| |||| | |||||||||||||| | ||| |||| ||||||||| ||||||
Sbjct: 514 attgagcttaaatagctccccagtgagactgttacaagcgcaaatgcactacacaaactc 455
Query: 443 ctcatggcatctggggcctgatcgtaaaagaactcaacttgaccaatacaagtaaacacc 502
||||||||||| ||||| | || ||| ||||||||||| ||||| || || ||| |||
Sbjct: 454 ctcatggcatcaggggcttcattgtagaagaactcaacctgacctatggcagcaaagacc 395
Query: 503 tcagcagcgcccaccaagaaatattgtggtatttgccaaagaatgctcattggaacagca 562
||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 394 tcagcagcgccaaccaagaaatactgcggtatttgccaaagaatgctcatcggaacagca 335
Query: 563 gccttctcatgaatgagaccttcagacctggcaatctctaaacgcttcaactcaactaga 622
| | ||||||||| ||||||||||| ||||| ||| |||||||| |||||||||| |||
Sbjct: 334 acatcctcatgaataagaccttcagatctggcgatccctaaacgcctcaactcaacaaga 275
Query: 623 gctgcagataccatcgcgagaatggacaggactaatccaattcccatccgctgtagctca 682
|||||||||| ||| || || ||||| ||| ||||||| ||||| |||||||||| ||||
Sbjct: 274 gctgcagatagcattgcaaggatggagagggctaatccgattccaatccgctgtaactca 215
Query: 683 gaaaaacccttctcccttccagtgaattttctagctagtggcaccaggatgcggtcatag 742
|| ||||||||||||||||||||||| |||||||||| |||||| || | ||| ||||
Sbjct: 214 gagaaacccttctcccttccagtgaactttctagctattggcacaagcacacggccataa 155
Query: 743 agtgggacccacatgatgacgctgattacatcaaaagtggagagagatgcaggaggaatg 802
| || | ||| |||||||| ||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 154 aacggaatccagatgatgacactgatgacatcaaaagttgagagggatgcaggagggaca 95
Query: 803 ttgaaagacccaatgcgcttgtcaagaaccatgccctgctctatgaacatggaagagttt 862
||||||| ||| || |||||||||||||| |||||||||||| |||| ||||||||
Sbjct: 94 atgaaaga-tcaactcggttgtcaagaaccattccctgctctatggacatagaagagttg 36
Query: 863 tgggcata 870
|| |||||
Sbjct: 35 tgagcata 28
>gb|AU055884.1|AU055884 AU055884 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S20126_1A, mRNA sequence
Length = 711
Score = 319 bits (161), Expect = 2e-084
Identities = 351/414 (84%), Gaps = 1/414 (0%)
Strand = Plus / Minus
Query: 501 cctcagcagcgcccaccaagaaatattgtggtatttgccaaagaatgctcattggaacag 560
||||||||||||| |||||||||| || |||||||||| |||||||||||| |||||||
Sbjct: 711 cctcagcagcgccanccaagaaatactgcggtatttgcccaagaatgctcatcggaacag 652
Query: 561 cagccttc-tcatgaatgagaccttcagacctggcaatctctaaacgcttcaactcaact 619
|| | | | |||||||| || |||||||| ||||| ||| |||||||| ||||||||||
Sbjct: 651 caacatccctcatgaataagnccttcagatctggcgatccctaaacgcctcaactcaaca 592
Query: 620 agagctgcagataccatcgcgagaatggacaggactaatccaattcccatccgctgtagc 679
|||||||||||| ||| || || ||||| ||| ||||||| ||||| |||||||||| |
Sbjct: 591 agagctgcagatngcattgcaaggatggagagggctaatccgattccaatccgctgtaac 532
Query: 680 tcagaaaaacccttctcccttccagtgaattttctagctagtggcaccaggatgcggtca 739
||||| ||||||||||||||||||||||| |||||||||| |||||| || | ||| ||
Sbjct: 531 tcagagaaacccttctcccttccagtgaactttctagctattggcacaagcacacggcca 472
Query: 740 tagagtgggacccacatgatgacgctgattacatcaaaagtggagagagatgcaggagga 799
|| | || | ||| |||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 471 taaaacggaatccagatgatgacactgatgacatcaaaagttgagagggatgcaggaggg 412
Query: 800 atgttgaaagacccaatgcgcttgtcaagaaccatgccctgctctatgaacatggaagag 859
| ||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 411 acaatgaaagatccaactcgcttgtcaagaaccattccctgctctatgaacatagaagag 352
Query: 860 ttttgggcataaacagcactgaatatgatagcagtagcccaaatgggaaacatt 913
|| || ||||| || || ||||||| |||| ||| ||||||||||||||||||
Sbjct: 351 ttgtgagcatacaccgcgttgaatataatagtagtggcccaaatgggaaacatt 298
>gb|CB684001.1|CB684001 OSJNEf13B21.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf13B21 3', mRNA sequence
Length = 737
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 535 ttgccaaagaatgctcattggaacag 560
|||||||||||||||||| |||||||
Sbjct: 612 ttgccaaagaatgctcatgggaacag 637
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 373 cggtcaagatggccttcattcaagttatcagggatcca 410
>gb|CF303618.1|CF303618 ABF1--02-M06.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--02-M06, mRNA sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 535 ttgccaaagaatgctcattggaacag 560
|||||||||||||||||| |||||||
Sbjct: 562 ttgccaaagaatgctcatgggaacag 587
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 323 cggtcaagatggccttcattcaagttatcagggatcca 360
>gb|CF304331.1|CF304331 ABF1--04-K24.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--04-K24, mRNA sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 535 ttgccaaagaatgctcattggaacag 560
|||||||||||||||||| |||||||
Sbjct: 562 ttgccaaagaatgctcatgggaacag 587
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 323 cggtcaagatggccttcattcaagttatcagggatcca 360
>dbj|AK099998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134C19, full
insert sequence
Length = 2093
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 1761 cggtcaagatggccttcattcaagttatcagggatcca 1798
>dbj|AK100552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023103K13, full
insert sequence
Length = 1981
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 1696 cggtcaagatggccttcattcaagttatcagggatcca 1659
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 535 ttgccaaagaatgctcattggaacag 560
|||||||||||||||||| |||||||
Sbjct: 1457 ttgccaaagaatgctcatgggaacag 1432
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16,
complete sequence
Length = 159092
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 153554 cggtcaagatggccttcattcaagttatcagggatcca 153591
>gb|AACV01006033.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006033, whole
genome shotgun sequence
Length = 12782
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 5781 cggtcaagatggccttcattcaagttatcagggatcca 5744
>ref|NT_107189.1| Oryza sativa (japonica cultivar-group)
Length = 1905944
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 296 cggtcgagatggccttcattcagattgtcagggatcca 333
||||| |||||||||||||||| || |||||||||||
Sbjct: 5539 cggtcaagatggccttcattcaagttatcagggatcca 5502
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,149,088
Number of Sequences: 438736
Number of extensions: 1149088
Number of successful extensions: 5556
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5447
Number of HSP's gapped (non-prelim): 108
length of query: 1036
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1015
effective length of database: 2,791,206,460
effective search space: 2833074556900
effective search space used: 2833074556900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)