BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750698.2.1
(1126 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_185521.2| Oryza sativa (japonica cultivar-group), mRNA 694 0.0
dbj|AK068462.1| Oryza sativa (japonica cultivar-group) cDNA... 678 0.0
gb|CF340296.1|CF340296 RCL1--07-J08.g1 Regenerated callus l... 442 e-121
gb|CV721311.1|CV721311 YBH--03-K11.b1 Rice before heading y... 305 3e-080
gb|AACV01017051.1| Oryza sativa (japonica cultivar-group) c... 242 3e-061
dbj|AP003816.2| Oryza sativa (japonica cultivar-group) geno... 242 3e-061
dbj|AP004316.4| Oryza sativa (japonica cultivar-group) geno... 242 3e-061
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 242 3e-061
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 242 3e-061
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 242 3e-061
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 242 3e-061
>ref|NM_185521.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 2383
Score = 694 bits (350), Expect = 0.0
Identities = 683/794 (86%)
Strand = Plus / Plus
Query: 8 gagctgctctgcaatctagtgggcagaattgcgctggtgctgaaagattttatgttcacg 67
||||||| ||||||||||| || || || || |||||||||||||||||||||||||||
Sbjct: 1216 gagctgccctgcaatctagcggacaaaactgtgctggtgctgaaagattttatgttcaca 1275
Query: 68 atgacatctattctgcctttgtttcacagatagtgaagacagtcaaatctataagtgttg 127
| || |||||||| | |||||||| || | ||||||| | ||||||||||| ||| |
Sbjct: 1276 aggatatctattcaacatttgtttcccaagtggtgaagataatcaaatctatatctgtcg 1335
Query: 128 gccccccattatcaggcagatatgacatgggtgcaatctgtatgattgagcactctgaga 187
| || |||||||| |||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct: 1336 gtcctccattatctggcagatacgatatgggtgctatctgtatgatagagcactctgaga 1395
Query: 188 aacttcagaatcttgttaatgatgctctagacaaaggtgccgaaattgccgtcaggggga 247
|||||||||||||||||||||||||| | ||||||||||| || ||||| | ||| ||||
Sbjct: 1396 aacttcagaatcttgttaatgatgctgttgacaaaggtgctgagattgctggcagaggga 1455
Query: 248 gttttggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctggtga 307
| |||||| |||| || ||||||||||| |||||||| || || ||||||| ||||||||
Sbjct: 1456 gctttggccatctgggtgaagatgcagtagatcaattctttcctccaactgtcctggtga 1515
Query: 308 atgttgatcacacaatgaaaattatgcaagaagagacatttggacctattataccaatca 367
||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct: 1516 atgttaatcacacaatgaaaattatgcaagaagaggcatttggacctattctgccaatca 1575
Query: 368 tgaaattcagttctgatgaagaggctatcaaacttgcaaacgactcaaaatatggtcttg 427
||||||||| ||| |||||||| | | |||||||||| || ||||| || || |||||||
Sbjct: 1576 tgaaattcaattccgatgaagaagttgtcaaacttgccaatgactccaagtacggtcttg 1635
Query: 428 gctgtgctgttttttcgggcaaccagaagcgtgccatcagaatagcgtcccagttacact 487
| |||||||| ||||| |||||||||||||||||||||| |||||| |||||| ||||||
Sbjct: 1636 gttgtgctgtcttttctggcaaccagaagcgtgccatcaaaatagcatcccagctacact 1695
Query: 488 gtggggtagcagcaatcaatgattttgcttcaagttacatgtgccagtctttgccattcg 547
|||| || || |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1696 gtggtgttgcggcaatcaatgattttgcttcaagttatatgtgtcagtctttgccattcg 1755
Query: 548 gtggtgttaaagacagcggattcgggagatttgctggcgtagaaggcttgcgagcttgct 607
||||||| ||||| || ||||| || ||||||||||| || ||||| ||||| |||||||
Sbjct: 1756 gtggtgtcaaagatagtggatttggaagatttgctggtgtggaaggtttgcgggcttgct 1815
Query: 608 gccttgtgaagtctgttgtagaagatagattgtggccatatattagaacagtgatcccga 667
||||||| ||| | |||||||||||||||| |||||||||| ||| ||| ||||||| |
Sbjct: 1816 gccttgtcaaggcagttgtagaagatagatggtggccatatgttaaaaccatgatcccaa 1875
Query: 668 agcctatccagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggaga 727
| ||||| |||||||| ||||| ||| |||||||||| ||||| ||||||| || || |
Sbjct: 1876 aacctattcagtatcctgtctccgagaatggatttgaattccaagagttgctcgttgaaa 1935
Query: 728 ctctgtatggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatgg 787
|||| || ||| ||| ||||||||||| |||||||| ||||| ||||| ||||||||
Sbjct: 1936 ctctctacggccttagtgtgtgggacagattgcggtcacttgtcaatctgttaaagatga 1995
Query: 788 ttaccgagcagaat 801
|| | |||||||||
Sbjct: 1996 tttcagagcagaat 2009
>dbj|AK068462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155B06, full
insert sequence
Length = 2383
Score = 678 bits (342), Expect = 0.0
Identities = 681/794 (85%)
Strand = Plus / Plus
Query: 8 gagctgctctgcaatctagtgggcagaattgcgctggtgctgaaagattttatgttcacg 67
||||||| ||||| ||||| || || || || |||||||||||||||||||||||||||
Sbjct: 1216 gagctgccctgcagtctagcggacaaaactgtgctggtgctgaaagattttatgttcaca 1275
Query: 68 atgacatctattctgcctttgtttcacagatagtgaagacagtcaaatctataagtgttg 127
| || |||||||| | |||||||| || | ||||||| | |||||| |||| ||| |
Sbjct: 1276 aggatatctattcaacatttgtttcccaagtggtgaagataatcaaatatatatctgtcg 1335
Query: 128 gccccccattatcaggcagatatgacatgggtgcaatctgtatgattgagcactctgaga 187
| || |||||||| |||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct: 1336 gtcctccattatctggcagatacgatatgggtgctatctgtatgatagagcactctgaga 1395
Query: 188 aacttcagaatcttgttaatgatgctctagacaaaggtgccgaaattgccgtcaggggga 247
|||||||||||||||||||||||||| | ||||||||||| || ||||| | ||| ||||
Sbjct: 1396 aacttcagaatcttgttaatgatgctgttgacaaaggtgctgagattgctggcagaggga 1455
Query: 248 gttttggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctggtga 307
| |||||| |||| || ||||||||||| |||||||| || || ||||||| ||||||||
Sbjct: 1456 gctttggccatctgggtgaagatgcagtagatcaattctttcctccaactgtcctggtga 1515
Query: 308 atgttgatcacacaatgaaaattatgcaagaagagacatttggacctattataccaatca 367
||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct: 1516 atgttaatcacacaatgaaaattatgcaagaagaggcatttggacctattctgccaatca 1575
Query: 368 tgaaattcagttctgatgaagaggctatcaaacttgcaaacgactcaaaatatggtcttg 427
||||||||| ||| |||||||| | | |||||||||| || ||||| || || |||||||
Sbjct: 1576 tgaaattcaattccgatgaagaagttgtcaaacttgccaatgactccaagtacggtcttg 1635
Query: 428 gctgtgctgttttttcgggcaaccagaagcgtgccatcagaatagcgtcccagttacact 487
| |||||||| ||||| |||||||||||||||||||||| |||||| |||||| ||||||
Sbjct: 1636 gttgtgctgtcttttctggcaaccagaagcgtgccatcaaaatagcatcccagctacact 1695
Query: 488 gtggggtagcagcaatcaatgattttgcttcaagttacatgtgccagtctttgccattcg 547
|||| || || |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1696 gtggtgttgcggcaatcaatgattttgcttcaagttatatgtgtcagtctttgccattcg 1755
Query: 548 gtggtgttaaagacagcggattcgggagatttgctggcgtagaaggcttgcgagcttgct 607
||||||| ||||| || ||||| || ||||||||||| || ||||| ||||| |||||||
Sbjct: 1756 gtggtgtcaaagatagtggatttggaagatttgctggtgtggaaggtttgcgggcttgct 1815
Query: 608 gccttgtgaagtctgttgtagaagatagattgtggccatatattagaacagtgatcccga 667
||||||| ||| | |||||||||||||||| |||||||||| ||| ||| ||||||| |
Sbjct: 1816 gccttgtcaaggcagttgtagaagatagatggtggccatatgttaaaaccatgatcccaa 1875
Query: 668 agcctatccagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggaga 727
| ||||| |||||||| ||||| ||| |||||||||| ||||| ||||||| || || |
Sbjct: 1876 aacctattcagtatcctgtctccgagaatggatttgaattccaagagttgctcgttgaaa 1935
Query: 728 ctctgtatggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatgg 787
|||| || ||| ||| ||||||||||| |||||||| ||||| ||||| ||||||||
Sbjct: 1936 ctctctacggccttagtgtgtgggacagattgcggtcacttgtcaatctgttaaagatga 1995
Query: 788 ttaccgagcagaat 801
|| | |||||||||
Sbjct: 1996 tttcagagcagaat 2009
>gb|CF340296.1|CF340296 RCL1--07-J08.g1 Regenerated callus lambda phage cDNA library (RCL1)
Oryza sativa (japonica cultivar-group) cDNA clone
RCL1--07-J08, mRNA sequence
Length = 520
Score = 442 bits (223), Expect = e-121
Identities = 435/503 (86%), Gaps = 2/503 (0%)
Strand = Plus / Plus
Query: 300 cctggtgaatgttgatcacacaatgaaaattatgcaagaagagacatttggacctattat 359
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 3 cctggtgaatgttaatcacacaatgaaaattatgcaagaagaggcatttggacctattct 62
Query: 360 accaatcatgaaattcagttctgatgaagaggctatcaaacttgcaaacgactcaaaata 419
|||||||||||||||| ||| |||||||| | | |||||||||| || ||||| || ||
Sbjct: 63 gccaatcatgaaattcaattccgatgaagaagttgtcaaacttgccaatgactccaagta 122
Query: 420 tggtcttggctgtgctgttttttcgggcaaccagaagcgtgccatcagaatagcgtccca 479
|||||||| |||||||| ||||| |||||||||||||||||||||| |||||| |||||
Sbjct: 123 cggtcttggttgtgctgtcttttctggcaaccagaagcgtgccatcaaaatagcatccca 182
Query: 480 gttacactgtggggtagcagcaatcaatgattttgcttcaagttacatgtgccagtcttt 539
| |||||||||| || || |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 183 gctacactgtggtgttgcggcaatcaatgattttgcttcaagttatatgtgtcagtcttt 242
Query: 540 gccattcggtggtgttaaagacagcggattcgggagatttgctggcgtagaaggcttgcg 599
||||||||||||||| ||||| || ||||| || ||||||||||| || ||||| |||||
Sbjct: 243 gccattcggtggtgtcaaagatagtggatttggaagatttgctgg-gtggaaggtttgcg 301
Query: 600 agcttgctgccttgtgaagtctgttgtagaagatagattgtggccatatattagaacagt 659
|||||||||||||| ||| | |||||||||||||||| |||||||||| ||| ||| |
Sbjct: 302 ggcttgctgccttgtcaaggcagttgtagaagatagatggtggccatatgttaaaaccat 361
Query: 660 gatcccgaagcctatccagtatcccgtctcagagcatggatttgagttccagcagttgct 719
|||||| || ||||| |||||||| ||||| ||| |||||||||| ||||| |||||||
Sbjct: 362 gatcccaaaacctattcagtatcctgtctccgagaatggatttgaattccaagagttgct 421
Query: 720 tgtggagactctgtatggctatagcgtgtgggacag-gttgcggtcccttgtgaatctta 778
|| || ||||| || ||| ||| ||||||||||| |||||||| ||||| |||||
Sbjct: 422 cgttgaaactctctacggccttagtgtgtgggacagatttgcggtcacttgtcaatctgt 481
Query: 779 taaagatggttaccgagcagaat 801
|||||||| || | |||||||||
Sbjct: 482 taaagatgatttcagagcagaat 504
>gb|CV721311.1|CV721311 YBH--03-K11.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--03-K11, mRNA sequence
Length = 439
Score = 305 bits (154), Expect = 3e-080
Identities = 256/290 (88%)
Strand = Plus / Plus
Query: 100 gtgaagacagtcaaatctataagtgttggccccccattatcaggcagatatgacatgggt 159
||||||| | ||||||||||| ||| || || |||||||| |||||||| || ||||||
Sbjct: 37 gtgaagataatcaaatctatatctgtcggtcctccattatctggcagatacgatatgggt 96
Query: 160 gcaatctgtatgattgagcactctgagaaacttcagaatcttgttaatgatgctctagac 219
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 97 gctatctgtatgatagagcactctgagaaacttcagaatcttgttaatgatgctgttgac 156
Query: 220 aaaggtgccgaaattgccgtcagggggagttttggcaatcttggggaagatgcagttgat 279
|||||||| || ||||| | ||| ||||| |||||| |||| || ||||||||||| |||
Sbjct: 157 aaaggtgctgagattgctggcagagggagctttggccatctgggtgaagatgcagtagat 216
Query: 280 caatttttcccaccaactggcctggtgaatgttgatcacacaatgaaaattatgcaagaa 339
||||| || || ||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 217 caattctttcctccaactgtcctggtgaatgttaatcacacaatgaaaattatgcaagaa 276
Query: 340 gagacatttggacctattataccaatcatgaaattcagttctgatgaaga 389
||| |||||||||||||| | |||||||||||||||| ||| ||||||||
Sbjct: 277 gaggcatttggacctattctgccaatcatgaaattcaattccgatgaaga 326
>gb|AACV01017051.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017051, whole
genome shotgun sequence
Length = 66741
Score = 242 bits (122), Expect = 3e-061
Identities = 188/210 (89%)
Strand = Plus / Plus
Query: 133 ccattatcaggcagatatgacatgggtgcaatctgtatgattgagcactctgagaaactt 192
|||||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 55576 ccattatctggcagatacgatatgggtgctatctgtatgatagagcactctgagaaactt 55635
Query: 193 cagaatcttgttaatgatgctctagacaaaggtgccgaaattgccgtcagggggagtttt 252
||||||||||||||||||||| | ||||||||||| || ||||| | ||| ||||| |||
Sbjct: 55636 cagaatcttgttaatgatgctgttgacaaaggtgctgagattgctggcagagggagcttt 55695
Query: 253 ggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctggtgaatgtt 312
||| |||| || ||||||||||| |||||||| || || ||||||| |||||||||||||
Sbjct: 55696 ggccatctgggtgaagatgcagtagatcaattctttcctccaactgtcctggtgaatgtt 55755
Query: 313 gatcacacaatgaaaattatgcaagaagag 342
|||||||||||||||||||||||||||||
Sbjct: 55756 aatcacacaatgaaaattatgcaagaagag 55785
Score = 196 bits (99), Expect = 2e-047
Identities = 165/187 (88%)
Strand = Plus / Plus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||||||| | |||||||||||||||| ||| |||||||| | | |||||||||
Sbjct: 55863 catttggacctattctgccaatcatgaaattcaattccgatgaagaagttgtcaaacttg 55922
Query: 404 caaacgactcaaaatatggtcttggctgtgctgttttttcgggcaaccagaagcgtgcca 463
| || ||||| || || |||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 55923 ccaatgactccaagtacggtcttggttgtgctgtcttttctggcaaccagaagcgtgcca 55982
Query: 464 tcagaatagcgtcccagttacactgtggggtagcagcaatcaatgattttgcttcaagtt 523
||| |||||| |||||| |||||||||| || || |||||||||||||||||||||||||
Sbjct: 55983 tcaaaatagcatcccagctacactgtggtgttgcggcaatcaatgattttgcttcaagtt 56042
Query: 524 acatgtg 530
| |||||
Sbjct: 56043 atatgtg 56049
Score = 133 bits (67), Expect = 2e-028
Identities = 124/143 (86%)
Strand = Plus / Plus
Query: 532 cagtctttgccattcggtggtgttaaagacagcggattcgggagatttgctggcgtagaa 591
||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || |||
Sbjct: 56271 cagtctttgccattcggtggtgtcaaagatagtggatttggaagatttgctggtgtggaa 56330
Query: 592 ggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagattgtggccatatatt 651
|| ||||| |||||||||||||| ||| | |||||||||||||||| |||||||||| ||
Sbjct: 56331 ggtttgcgggcttgctgccttgtcaaggcagttgtagaagatagatggtggccatatgtt 56390
Query: 652 agaacagtgatcccgaagcctat 674
| ||| ||||||| || |||||
Sbjct: 56391 aaaaccatgatcccaaaacctat 56413
Score = 101 bits (51), Expect = 8e-019
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 244 gggagttttggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctg 303
||||| |||||| |||| || ||||||||||| |||| ||| || | ||||||| ||||
Sbjct: 36673 gggagctttggccatctgggtgaagatgcagtagatcgattcttttctccaactgtcctg 36732
Query: 304 gtgaatgttgatcacacaatgaaaattatgcaagaagag 342
||||||||| |||||||||||||||||||||||||||||
Sbjct: 36733 gtgaatgttaatcacacaatgaaaattatgcaagaagag 36771
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 8 gagctgctctgcaatctagtgggcagaattgcgctggtgctgaaagattttatgttcacg 67
||||||| ||||||||||| || || || || |||||||||||||||||||||||||||
Sbjct: 55019 gagctgccctgcaatctagcggacaaaactgtgctggtgctgaaagattttatgttcaca 55078
Query: 68 atgacatctattctgcctttgtttcacagatagtgaagacagtcaaatctata 120
| || |||||||| | |||||||| || | ||||||| | |||||||||||
Sbjct: 55079 aggatatctattcaacatttgtttcccaagtggtgaagataatcaaatctata 55131
Score = 81.8 bits (41), Expect = 7e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||| ||| | ||||||||||| |||||||| |||||||| | | |||||||||
Sbjct: 36849 catttggaccaattctgccaatcatgaagttcagttccgatgaagaagttgtcaaacttg 36908
Query: 404 caaacgactcaaaatatggtcttggctgtgctg 436
| || ||||| || ||||||||||| |||||||
Sbjct: 36909 cgaatgactccaagtatggtcttggttgtgctg 36941
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 676 cagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 735
|||||||| ||||| ||| |||||||||| ||||| ||||||| || || ||||| ||
Sbjct: 56501 cagtatcctgtctccgagaatggatttgaattccaagagttgctcgttgaaactctctac 56560
Query: 736 ggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 795
||| ||| ||||||||||| |||||||| ||||| ||||| |||||||| || | |||
Sbjct: 56561 ggccttagtgtgtgggacagattgcggtcacttgtcaatctgttaaagatgatttcagag 56620
Query: 796 cagaat 801
||||||
Sbjct: 56621 cagaat 56626
>dbj|AP003816.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1165_F02
Length = 125993
Score = 242 bits (122), Expect = 3e-061
Identities = 188/210 (89%)
Strand = Plus / Minus
Query: 133 ccattatcaggcagatatgacatgggtgcaatctgtatgattgagcactctgagaaactt 192
|||||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 59508 ccattatctggcagatacgatatgggtgctatctgtatgatagagcactctgagaaactt 59449
Query: 193 cagaatcttgttaatgatgctctagacaaaggtgccgaaattgccgtcagggggagtttt 252
||||||||||||||||||||| | ||||||||||| || ||||| | ||| ||||| |||
Sbjct: 59448 cagaatcttgttaatgatgctgttgacaaaggtgctgagattgctggcagagggagcttt 59389
Query: 253 ggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctggtgaatgtt 312
||| |||| || ||||||||||| |||||||| || || ||||||| |||||||||||||
Sbjct: 59388 ggccatctgggtgaagatgcagtagatcaattctttcctccaactgtcctggtgaatgtt 59329
Query: 313 gatcacacaatgaaaattatgcaagaagag 342
|||||||||||||||||||||||||||||
Sbjct: 59328 aatcacacaatgaaaattatgcaagaagag 59299
Score = 196 bits (99), Expect = 2e-047
Identities = 165/187 (88%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||||||| | |||||||||||||||| ||| |||||||| | | |||||||||
Sbjct: 59221 catttggacctattctgccaatcatgaaattcaattccgatgaagaagttgtcaaacttg 59162
Query: 404 caaacgactcaaaatatggtcttggctgtgctgttttttcgggcaaccagaagcgtgcca 463
| || ||||| || || |||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 59161 ccaatgactccaagtacggtcttggttgtgctgtcttttctggcaaccagaagcgtgcca 59102
Query: 464 tcagaatagcgtcccagttacactgtggggtagcagcaatcaatgattttgcttcaagtt 523
||| |||||| |||||| |||||||||| || || |||||||||||||||||||||||||
Sbjct: 59101 tcaaaatagcatcccagctacactgtggtgttgcggcaatcaatgattttgcttcaagtt 59042
Query: 524 acatgtg 530
| |||||
Sbjct: 59041 atatgtg 59035
Score = 133 bits (67), Expect = 2e-028
Identities = 124/143 (86%)
Strand = Plus / Minus
Query: 532 cagtctttgccattcggtggtgttaaagacagcggattcgggagatttgctggcgtagaa 591
||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || |||
Sbjct: 58813 cagtctttgccattcggtggtgtcaaagatagtggatttggaagatttgctggtgtggaa 58754
Query: 592 ggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagattgtggccatatatt 651
|| ||||| |||||||||||||| ||| | |||||||||||||||| |||||||||| ||
Sbjct: 58753 ggtttgcgggcttgctgccttgtcaaggcagttgtagaagatagatggtggccatatgtt 58694
Query: 652 agaacagtgatcccgaagcctat 674
| ||| ||||||| || |||||
Sbjct: 58693 aaaaccatgatcccaaaacctat 58671
Score = 101 bits (51), Expect = 8e-019
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 244 gggagttttggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctg 303
||||| |||||| |||| || ||||||||||| |||| ||| || | ||||||| ||||
Sbjct: 78411 gggagctttggccatctgggtgaagatgcagtagatcgattcttttctccaactgtcctg 78352
Query: 304 gtgaatgttgatcacacaatgaaaattatgcaagaagag 342
||||||||| |||||||||||||||||||||||||||||
Sbjct: 78351 gtgaatgttaatcacacaatgaaaattatgcaagaagag 78313
Score = 81.8 bits (41), Expect = 7e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||| ||| | ||||||||||| |||||||| |||||||| | | |||||||||
Sbjct: 78235 catttggaccaattctgccaatcatgaagttcagttccgatgaagaagttgtcaaacttg 78176
Query: 404 caaacgactcaaaatatggtcttggctgtgctg 436
| || ||||| || ||||||||||| |||||||
Sbjct: 78175 cgaatgactccaagtatggtcttggttgtgctg 78143
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 8 gagctgctctgcaatctagtgggcagaattgcgctggtgctgaaagattttatgttcacg 67
||||||| ||||||||||| || || || || |||||||||||||||||||||||||||
Sbjct: 60065 gagctgccctgcaatctagcggacaaaactgtgctggtgctgaaagattttatgttcaca 60006
Query: 68 atgacatctattctgcctttgtttcacagatagtgaagacagtcaaatctata 120
| || |||||||| | |||||||| || | ||||||| | |||||||||||
Sbjct: 60005 aggatatctattcaacatttgtttcccaagtggtgaagataatcaaatctata 59953
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 676 cagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 735
|||||||| ||||| ||| |||||||||| ||||| ||||||| || || ||||| ||
Sbjct: 58583 cagtatcctgtctccgagaatggatttgaattccaagagttgctcgttgaaactctctac 58524
Query: 736 ggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 795
||| ||| ||||||||||| |||||||| ||||| ||||| |||||||| || | |||
Sbjct: 58523 ggccttagtgtgtgggacagattgcggtcacttgtcaatctgttaaagatgatttcagag 58464
Query: 796 cagaat 801
||||||
Sbjct: 58463 cagaat 58458
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0597G07
Length = 152928
Score = 242 bits (122), Expect = 3e-061
Identities = 188/210 (89%)
Strand = Plus / Minus
Query: 133 ccattatcaggcagatatgacatgggtgcaatctgtatgattgagcactctgagaaactt 192
|||||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 8123 ccattatctggcagatacgatatgggtgctatctgtatgatagagcactctgagaaactt 8064
Query: 193 cagaatcttgttaatgatgctctagacaaaggtgccgaaattgccgtcagggggagtttt 252
||||||||||||||||||||| | ||||||||||| || ||||| | ||| ||||| |||
Sbjct: 8063 cagaatcttgttaatgatgctgttgacaaaggtgctgagattgctggcagagggagcttt 8004
Query: 253 ggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctggtgaatgtt 312
||| |||| || ||||||||||| |||||||| || || ||||||| |||||||||||||
Sbjct: 8003 ggccatctgggtgaagatgcagtagatcaattctttcctccaactgtcctggtgaatgtt 7944
Query: 313 gatcacacaatgaaaattatgcaagaagag 342
|||||||||||||||||||||||||||||
Sbjct: 7943 aatcacacaatgaaaattatgcaagaagag 7914
Score = 196 bits (99), Expect = 2e-047
Identities = 165/187 (88%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||||||| | |||||||||||||||| ||| |||||||| | | |||||||||
Sbjct: 7836 catttggacctattctgccaatcatgaaattcaattccgatgaagaagttgtcaaacttg 7777
Query: 404 caaacgactcaaaatatggtcttggctgtgctgttttttcgggcaaccagaagcgtgcca 463
| || ||||| || || |||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 7776 ccaatgactccaagtacggtcttggttgtgctgtcttttctggcaaccagaagcgtgcca 7717
Query: 464 tcagaatagcgtcccagttacactgtggggtagcagcaatcaatgattttgcttcaagtt 523
||| |||||| |||||| |||||||||| || || |||||||||||||||||||||||||
Sbjct: 7716 tcaaaatagcatcccagctacactgtggtgttgcggcaatcaatgattttgcttcaagtt 7657
Query: 524 acatgtg 530
| |||||
Sbjct: 7656 atatgtg 7650
Score = 133 bits (67), Expect = 2e-028
Identities = 124/143 (86%)
Strand = Plus / Minus
Query: 532 cagtctttgccattcggtggtgttaaagacagcggattcgggagatttgctggcgtagaa 591
||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || |||
Sbjct: 7428 cagtctttgccattcggtggtgtcaaagatagtggatttggaagatttgctggtgtggaa 7369
Query: 592 ggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagattgtggccatatatt 651
|| ||||| |||||||||||||| ||| | |||||||||||||||| |||||||||| ||
Sbjct: 7368 ggtttgcgggcttgctgccttgtcaaggcagttgtagaagatagatggtggccatatgtt 7309
Query: 652 agaacagtgatcccgaagcctat 674
| ||| ||||||| || |||||
Sbjct: 7308 aaaaccatgatcccaaaacctat 7286
Score = 101 bits (51), Expect = 8e-019
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 244 gggagttttggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctg 303
||||| |||||| |||| || ||||||||||| |||| ||| || | ||||||| ||||
Sbjct: 27026 gggagctttggccatctgggtgaagatgcagtagatcgattcttttctccaactgtcctg 26967
Query: 304 gtgaatgttgatcacacaatgaaaattatgcaagaagag 342
||||||||| |||||||||||||||||||||||||||||
Sbjct: 26966 gtgaatgttaatcacacaatgaaaattatgcaagaagag 26928
Score = 81.8 bits (41), Expect = 7e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||| ||| | ||||||||||| |||||||| |||||||| | | |||||||||
Sbjct: 26850 catttggaccaattctgccaatcatgaagttcagttccgatgaagaagttgtcaaacttg 26791
Query: 404 caaacgactcaaaatatggtcttggctgtgctg 436
| || ||||| || ||||||||||| |||||||
Sbjct: 26790 cgaatgactccaagtatggtcttggttgtgctg 26758
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 8 gagctgctctgcaatctagtgggcagaattgcgctggtgctgaaagattttatgttcacg 67
||||||| ||||||||||| || || || || |||||||||||||||||||||||||||
Sbjct: 8680 gagctgccctgcaatctagcggacaaaactgtgctggtgctgaaagattttatgttcaca 8621
Query: 68 atgacatctattctgcctttgtttcacagatagtgaagacagtcaaatctata 120
| || |||||||| | |||||||| || | ||||||| | |||||||||||
Sbjct: 8620 aggatatctattcaacatttgtttcccaagtggtgaagataatcaaatctata 8568
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 676 cagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 735
|||||||| ||||| ||| |||||||||| ||||| ||||||| || || ||||| ||
Sbjct: 7198 cagtatcctgtctccgagaatggatttgaattccaagagttgctcgttgaaactctctac 7139
Query: 736 ggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 795
||| ||| ||||||||||| |||||||| ||||| ||||| |||||||| || | |||
Sbjct: 7138 ggccttagtgtgtgggacagattgcggtcacttgtcaatctgttaaagatgatttcagag 7079
Query: 796 cagaat 801
||||||
Sbjct: 7078 cagaat 7073
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 242 bits (122), Expect = 3e-061
Identities = 188/210 (89%)
Strand = Plus / Minus
Query: 133 ccattatcaggcagatatgacatgggtgcaatctgtatgattgagcactctgagaaactt 192
|||||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 16832439 ccattatctggcagatacgatatgggtgctatctgtatgatagagcactctgagaaactt 16832380
Query: 193 cagaatcttgttaatgatgctctagacaaaggtgccgaaattgccgtcagggggagtttt 252
||||||||||||||||||||| | ||||||||||| || ||||| | ||| ||||| |||
Sbjct: 16832379 cagaatcttgttaatgatgctgttgacaaaggtgctgagattgctggcagagggagcttt 16832320
Query: 253 ggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctggtgaatgtt 312
||| |||| || ||||||||||| |||||||| || || ||||||| |||||||||||||
Sbjct: 16832319 ggccatctgggtgaagatgcagtagatcaattctttcctccaactgtcctggtgaatgtt 16832260
Query: 313 gatcacacaatgaaaattatgcaagaagag 342
|||||||||||||||||||||||||||||
Sbjct: 16832259 aatcacacaatgaaaattatgcaagaagag 16832230
Score = 196 bits (99), Expect = 2e-047
Identities = 165/187 (88%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||||||| | |||||||||||||||| ||| |||||||| | | |||||||||
Sbjct: 16832152 catttggacctattctgccaatcatgaaattcaattccgatgaagaagttgtcaaacttg 16832093
Query: 404 caaacgactcaaaatatggtcttggctgtgctgttttttcgggcaaccagaagcgtgcca 463
| || ||||| || || |||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 16832092 ccaatgactccaagtacggtcttggttgtgctgtcttttctggcaaccagaagcgtgcca 16832033
Query: 464 tcagaatagcgtcccagttacactgtggggtagcagcaatcaatgattttgcttcaagtt 523
||| |||||| |||||| |||||||||| || || |||||||||||||||||||||||||
Sbjct: 16832032 tcaaaatagcatcccagctacactgtggtgttgcggcaatcaatgattttgcttcaagtt 16831973
Query: 524 acatgtg 530
| |||||
Sbjct: 16831972 atatgtg 16831966
Score = 133 bits (67), Expect = 2e-028
Identities = 124/143 (86%)
Strand = Plus / Minus
Query: 532 cagtctttgccattcggtggtgttaaagacagcggattcgggagatttgctggcgtagaa 591
||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || |||
Sbjct: 16831744 cagtctttgccattcggtggtgtcaaagatagtggatttggaagatttgctggtgtggaa 16831685
Query: 592 ggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagattgtggccatatatt 651
|| ||||| |||||||||||||| ||| | |||||||||||||||| |||||||||| ||
Sbjct: 16831684 ggtttgcgggcttgctgccttgtcaaggcagttgtagaagatagatggtggccatatgtt 16831625
Query: 652 agaacagtgatcccgaagcctat 674
| ||| ||||||| || |||||
Sbjct: 16831624 aaaaccatgatcccaaaacctat 16831602
Score = 101 bits (51), Expect = 8e-019
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 244 gggagttttggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctg 303
||||| |||||| |||| || ||||||||||| |||| ||| || | ||||||| ||||
Sbjct: 16851342 gggagctttggccatctgggtgaagatgcagtagatcgattcttttctccaactgtcctg 16851283
Query: 304 gtgaatgttgatcacacaatgaaaattatgcaagaagag 342
||||||||| |||||||||||||||||||||||||||||
Sbjct: 16851282 gtgaatgttaatcacacaatgaaaattatgcaagaagag 16851244
Score = 81.8 bits (41), Expect = 7e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||| ||| | ||||||||||| |||||||| |||||||| | | |||||||||
Sbjct: 16851166 catttggaccaattctgccaatcatgaagttcagttccgatgaagaagttgtcaaacttg 16851107
Query: 404 caaacgactcaaaatatggtcttggctgtgctg 436
| || ||||| || ||||||||||| |||||||
Sbjct: 16851106 cgaatgactccaagtatggtcttggttgtgctg 16851074
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 8 gagctgctctgcaatctagtgggcagaattgcgctggtgctgaaagattttatgttcacg 67
||||||| ||||||||||| || || || || |||||||||||||||||||||||||||
Sbjct: 16832996 gagctgccctgcaatctagcggacaaaactgtgctggtgctgaaagattttatgttcaca 16832937
Query: 68 atgacatctattctgcctttgtttcacagatagtgaagacagtcaaatctata 120
| || |||||||| | |||||||| || | ||||||| | |||||||||||
Sbjct: 16832936 aggatatctattcaacatttgtttcccaagtggtgaagataatcaaatctata 16832884
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 676 cagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 735
|||||||| ||||| ||| |||||||||| ||||| ||||||| || || ||||| ||
Sbjct: 16831514 cagtatcctgtctccgagaatggatttgaattccaagagttgctcgttgaaactctctac 16831455
Query: 736 ggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 795
||| ||| ||||||||||| |||||||| ||||| ||||| |||||||| || | |||
Sbjct: 16831454 ggccttagtgtgtgggacagattgcggtcacttgtcaatctgttaaagatgatttcagag 16831395
Query: 796 cagaat 801
||||||
Sbjct: 16831394 cagaat 16831389
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 242 bits (122), Expect = 3e-061
Identities = 188/210 (89%)
Strand = Plus / Minus
Query: 133 ccattatcaggcagatatgacatgggtgcaatctgtatgattgagcactctgagaaactt 192
|||||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 14819343 ccattatctggcagatacgatatgggtgctatctgtatgatagagcactctgagaaactt 14819284
Query: 193 cagaatcttgttaatgatgctctagacaaaggtgccgaaattgccgtcagggggagtttt 252
||||||||||||||||||||| | ||||||||||| || ||||| | ||| ||||| |||
Sbjct: 14819283 cagaatcttgttaatgatgctgttgacaaaggtgctgagattgctggcagagggagcttt 14819224
Query: 253 ggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctggtgaatgtt 312
||| |||| || ||||||||||| |||||||| || || ||||||| |||||||||||||
Sbjct: 14819223 ggccatctgggtgaagatgcagtagatcaattctttcctccaactgtcctggtgaatgtt 14819164
Query: 313 gatcacacaatgaaaattatgcaagaagag 342
|||||||||||||||||||||||||||||
Sbjct: 14819163 aatcacacaatgaaaattatgcaagaagag 14819134
Score = 196 bits (99), Expect = 2e-047
Identities = 165/187 (88%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||||||| | |||||||||||||||| ||| |||||||| | | |||||||||
Sbjct: 14819056 catttggacctattctgccaatcatgaaattcaattccgatgaagaagttgtcaaacttg 14818997
Query: 404 caaacgactcaaaatatggtcttggctgtgctgttttttcgggcaaccagaagcgtgcca 463
| || ||||| || || |||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 14818996 ccaatgactccaagtacggtcttggttgtgctgtcttttctggcaaccagaagcgtgcca 14818937
Query: 464 tcagaatagcgtcccagttacactgtggggtagcagcaatcaatgattttgcttcaagtt 523
||| |||||| |||||| |||||||||| || || |||||||||||||||||||||||||
Sbjct: 14818936 tcaaaatagcatcccagctacactgtggtgttgcggcaatcaatgattttgcttcaagtt 14818877
Query: 524 acatgtg 530
| |||||
Sbjct: 14818876 atatgtg 14818870
Score = 133 bits (67), Expect = 2e-028
Identities = 124/143 (86%)
Strand = Plus / Minus
Query: 532 cagtctttgccattcggtggtgttaaagacagcggattcgggagatttgctggcgtagaa 591
||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || |||
Sbjct: 14818648 cagtctttgccattcggtggtgtcaaagatagtggatttggaagatttgctggtgtggaa 14818589
Query: 592 ggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagattgtggccatatatt 651
|| ||||| |||||||||||||| ||| | |||||||||||||||| |||||||||| ||
Sbjct: 14818588 ggtttgcgggcttgctgccttgtcaaggcagttgtagaagatagatggtggccatatgtt 14818529
Query: 652 agaacagtgatcccgaagcctat 674
| ||| ||||||| || |||||
Sbjct: 14818528 aaaaccatgatcccaaaacctat 14818506
Score = 101 bits (51), Expect = 8e-019
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 244 gggagttttggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctg 303
||||| |||||| |||| || ||||||||||| |||| ||| || | ||||||| ||||
Sbjct: 14838246 gggagctttggccatctgggtgaagatgcagtagatcgattcttttctccaactgtcctg 14838187
Query: 304 gtgaatgttgatcacacaatgaaaattatgcaagaagag 342
||||||||| |||||||||||||||||||||||||||||
Sbjct: 14838186 gtgaatgttaatcacacaatgaaaattatgcaagaagag 14838148
Score = 81.8 bits (41), Expect = 7e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||| ||| | ||||||||||| |||||||| |||||||| | | |||||||||
Sbjct: 14838070 catttggaccaattctgccaatcatgaagttcagttccgatgaagaagttgtcaaacttg 14838011
Query: 404 caaacgactcaaaatatggtcttggctgtgctg 436
| || ||||| || ||||||||||| |||||||
Sbjct: 14838010 cgaatgactccaagtatggtcttggttgtgctg 14837978
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 8 gagctgctctgcaatctagtgggcagaattgcgctggtgctgaaagattttatgttcacg 67
||||||| ||||||||||| || || || || |||||||||||||||||||||||||||
Sbjct: 14819900 gagctgccctgcaatctagcggacaaaactgtgctggtgctgaaagattttatgttcaca 14819841
Query: 68 atgacatctattctgcctttgtttcacagatagtgaagacagtcaaatctata 120
| || |||||||| | |||||||| || | ||||||| | |||||||||||
Sbjct: 14819840 aggatatctattcaacatttgtttcccaagtggtgaagataatcaaatctata 14819788
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 676 cagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 735
|||||||| ||||| ||| |||||||||| ||||| ||||||| || || ||||| ||
Sbjct: 14818418 cagtatcctgtctccgagaatggatttgaattccaagagttgctcgttgaaactctctac 14818359
Query: 736 ggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 795
||| ||| ||||||||||| |||||||| ||||| ||||| |||||||| || | |||
Sbjct: 14818358 ggccttagtgtgtgggacagattgcggtcacttgtcaatctgttaaagatgatttcagag 14818299
Query: 796 cagaat 801
||||||
Sbjct: 14818298 cagaat 14818293
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 242 bits (122), Expect = 3e-061
Identities = 188/210 (89%)
Strand = Plus / Minus
Query: 133 ccattatcaggcagatatgacatgggtgcaatctgtatgattgagcactctgagaaactt 192
|||||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 28218782 ccattatctggcagatacgatatgggtgctatctgtatgatagagcactctgagaaactt 28218723
Query: 193 cagaatcttgttaatgatgctctagacaaaggtgccgaaattgccgtcagggggagtttt 252
||||||||||||||||||||| | ||||||||||| || ||||| | ||| ||||| |||
Sbjct: 28218722 cagaatcttgttaatgatgctgttgacaaaggtgctgagattgctggcagagggagcttt 28218663
Query: 253 ggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctggtgaatgtt 312
||| |||| || ||||||||||| |||||||| || || ||||||| |||||||||||||
Sbjct: 28218662 ggccatctgggtgaagatgcagtagatcaattctttcctccaactgtcctggtgaatgtt 28218603
Query: 313 gatcacacaatgaaaattatgcaagaagag 342
|||||||||||||||||||||||||||||
Sbjct: 28218602 aatcacacaatgaaaattatgcaagaagag 28218573
Score = 196 bits (99), Expect = 2e-047
Identities = 165/187 (88%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||||||| | |||||||||||||||| ||| |||||||| | | |||||||||
Sbjct: 28218495 catttggacctattctgccaatcatgaaattcaattccgatgaagaagttgtcaaacttg 28218436
Query: 404 caaacgactcaaaatatggtcttggctgtgctgttttttcgggcaaccagaagcgtgcca 463
| || ||||| || || |||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 28218435 ccaatgactccaagtacggtcttggttgtgctgtcttttctggcaaccagaagcgtgcca 28218376
Query: 464 tcagaatagcgtcccagttacactgtggggtagcagcaatcaatgattttgcttcaagtt 523
||| |||||| |||||| |||||||||| || || |||||||||||||||||||||||||
Sbjct: 28218375 tcaaaatagcatcccagctacactgtggtgttgcggcaatcaatgattttgcttcaagtt 28218316
Query: 524 acatgtg 530
| |||||
Sbjct: 28218315 atatgtg 28218309
Score = 133 bits (67), Expect = 2e-028
Identities = 124/143 (86%)
Strand = Plus / Minus
Query: 532 cagtctttgccattcggtggtgttaaagacagcggattcgggagatttgctggcgtagaa 591
||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || |||
Sbjct: 28218087 cagtctttgccattcggtggtgtcaaagatagtggatttggaagatttgctggtgtggaa 28218028
Query: 592 ggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagattgtggccatatatt 651
|| ||||| |||||||||||||| ||| | |||||||||||||||| |||||||||| ||
Sbjct: 28218027 ggtttgcgggcttgctgccttgtcaaggcagttgtagaagatagatggtggccatatgtt 28217968
Query: 652 agaacagtgatcccgaagcctat 674
| ||| ||||||| || |||||
Sbjct: 28217967 aaaaccatgatcccaaaacctat 28217945
Score = 101 bits (51), Expect = 8e-019
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 244 gggagttttggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctg 303
||||| |||||| |||| || ||||||||||| |||| ||| || | ||||||| ||||
Sbjct: 28237685 gggagctttggccatctgggtgaagatgcagtagatcgattcttttctccaactgtcctg 28237626
Query: 304 gtgaatgttgatcacacaatgaaaattatgcaagaagag 342
||||||||| |||||||||||||||||||||||||||||
Sbjct: 28237625 gtgaatgttaatcacacaatgaaaattatgcaagaagag 28237587
Score = 81.8 bits (41), Expect = 7e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||| ||| | ||||||||||| |||||||| |||||||| | | |||||||||
Sbjct: 28237509 catttggaccaattctgccaatcatgaagttcagttccgatgaagaagttgtcaaacttg 28237450
Query: 404 caaacgactcaaaatatggtcttggctgtgctg 436
| || ||||| || ||||||||||| |||||||
Sbjct: 28237449 cgaatgactccaagtatggtcttggttgtgctg 28237417
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 8 gagctgctctgcaatctagtgggcagaattgcgctggtgctgaaagattttatgttcacg 67
||||||| ||||||||||| || || || || |||||||||||||||||||||||||||
Sbjct: 28219339 gagctgccctgcaatctagcggacaaaactgtgctggtgctgaaagattttatgttcaca 28219280
Query: 68 atgacatctattctgcctttgtttcacagatagtgaagacagtcaaatctata 120
| || |||||||| | |||||||| || | ||||||| | |||||||||||
Sbjct: 28219279 aggatatctattcaacatttgtttcccaagtggtgaagataatcaaatctata 28219227
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 676 cagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 735
|||||||| ||||| ||| |||||||||| ||||| ||||||| || || ||||| ||
Sbjct: 28217857 cagtatcctgtctccgagaatggatttgaattccaagagttgctcgttgaaactctctac 28217798
Query: 736 ggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 795
||| ||| ||||||||||| |||||||| ||||| ||||| |||||||| || | |||
Sbjct: 28217797 ggccttagtgtgtgggacagattgcggtcacttgtcaatctgttaaagatgatttcagag 28217738
Query: 796 cagaat 801
||||||
Sbjct: 28217737 cagaat 28217732
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 242 bits (122), Expect = 3e-061
Identities = 188/210 (89%)
Strand = Plus / Minus
Query: 133 ccattatcaggcagatatgacatgggtgcaatctgtatgattgagcactctgagaaactt 192
|||||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 29219434 ccattatctggcagatacgatatgggtgctatctgtatgatagagcactctgagaaactt 29219375
Query: 193 cagaatcttgttaatgatgctctagacaaaggtgccgaaattgccgtcagggggagtttt 252
||||||||||||||||||||| | ||||||||||| || ||||| | ||| ||||| |||
Sbjct: 29219374 cagaatcttgttaatgatgctgttgacaaaggtgctgagattgctggcagagggagcttt 29219315
Query: 253 ggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctggtgaatgtt 312
||| |||| || ||||||||||| |||||||| || || ||||||| |||||||||||||
Sbjct: 29219314 ggccatctgggtgaagatgcagtagatcaattctttcctccaactgtcctggtgaatgtt 29219255
Query: 313 gatcacacaatgaaaattatgcaagaagag 342
|||||||||||||||||||||||||||||
Sbjct: 29219254 aatcacacaatgaaaattatgcaagaagag 29219225
Score = 196 bits (99), Expect = 2e-047
Identities = 165/187 (88%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||||||| | |||||||||||||||| ||| |||||||| | | |||||||||
Sbjct: 29219147 catttggacctattctgccaatcatgaaattcaattccgatgaagaagttgtcaaacttg 29219088
Query: 404 caaacgactcaaaatatggtcttggctgtgctgttttttcgggcaaccagaagcgtgcca 463
| || ||||| || || |||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 29219087 ccaatgactccaagtacggtcttggttgtgctgtcttttctggcaaccagaagcgtgcca 29219028
Query: 464 tcagaatagcgtcccagttacactgtggggtagcagcaatcaatgattttgcttcaagtt 523
||| |||||| |||||| |||||||||| || || |||||||||||||||||||||||||
Sbjct: 29219027 tcaaaatagcatcccagctacactgtggtgttgcggcaatcaatgattttgcttcaagtt 29218968
Query: 524 acatgtg 530
| |||||
Sbjct: 29218967 atatgtg 29218961
Score = 133 bits (67), Expect = 2e-028
Identities = 124/143 (86%)
Strand = Plus / Minus
Query: 532 cagtctttgccattcggtggtgttaaagacagcggattcgggagatttgctggcgtagaa 591
||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || |||
Sbjct: 29218739 cagtctttgccattcggtggtgtcaaagatagtggatttggaagatttgctggtgtggaa 29218680
Query: 592 ggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagattgtggccatatatt 651
|| ||||| |||||||||||||| ||| | |||||||||||||||| |||||||||| ||
Sbjct: 29218679 ggtttgcgggcttgctgccttgtcaaggcagttgtagaagatagatggtggccatatgtt 29218620
Query: 652 agaacagtgatcccgaagcctat 674
| ||| ||||||| || |||||
Sbjct: 29218619 aaaaccatgatcccaaaacctat 29218597
Score = 101 bits (51), Expect = 8e-019
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 244 gggagttttggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctg 303
||||| |||||| |||| || ||||||||||| |||| ||| || | ||||||| ||||
Sbjct: 29238337 gggagctttggccatctgggtgaagatgcagtagatcgattcttttctccaactgtcctg 29238278
Query: 304 gtgaatgttgatcacacaatgaaaattatgcaagaagag 342
||||||||| |||||||||||||||||||||||||||||
Sbjct: 29238277 gtgaatgttaatcacacaatgaaaattatgcaagaagag 29238239
Score = 81.8 bits (41), Expect = 7e-013
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
|||||||||| ||| | ||||||||||| |||||||| |||||||| | | |||||||||
Sbjct: 29238161 catttggaccaattctgccaatcatgaagttcagttccgatgaagaagttgtcaaacttg 29238102
Query: 404 caaacgactcaaaatatggtcttggctgtgctg 436
| || ||||| || ||||||||||| |||||||
Sbjct: 29238101 cgaatgactccaagtatggtcttggttgtgctg 29238069
Score = 81.8 bits (41), Expect = 7e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 8 gagctgctctgcaatctagtgggcagaattgcgctggtgctgaaagattttatgttcacg 67
||||||| ||||||||||| || || || || |||||||||||||||||||||||||||
Sbjct: 29219991 gagctgccctgcaatctagcggacaaaactgtgctggtgctgaaagattttatgttcaca 29219932
Query: 68 atgacatctattctgcctttgtttcacagatagtgaagacagtcaaatctata 120
| || |||||||| | |||||||| || | ||||||| | |||||||||||
Sbjct: 29219931 aggatatctattcaacatttgtttcccaagtggtgaagataatcaaatctata 29219879
Score = 75.8 bits (38), Expect = 5e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 676 cagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 735
|||||||| ||||| ||| |||||||||| ||||| ||||||| || || ||||| ||
Sbjct: 29218509 cagtatcctgtctccgagaatggatttgaattccaagagttgctcgttgaaactctctac 29218450
Query: 736 ggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 795
||| ||| ||||||||||| |||||||| ||||| ||||| |||||||| || | |||
Sbjct: 29218449 ggccttagtgtgtgggacagattgcggtcacttgtcaatctgttaaagatgatttcagag 29218390
Query: 796 cagaat 801
||||||
Sbjct: 29218389 cagaat 29218384
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,319,202
Number of Sequences: 438736
Number of extensions: 1319202
Number of successful extensions: 7827
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7728
Number of HSP's gapped (non-prelim): 98
length of query: 1126
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1105
effective length of database: 2,791,206,460
effective search space: 3084283138300
effective search space used: 3084283138300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)