BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750422.2.1
(1599 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK120521.1| Oryza sativa (japonica cultivar-group) cDNA... 900 0.0
dbj|AK112023.1| Oryza sativa (japonica cultivar-group) cDNA... 811 0.0
dbj|AK120711.1| Oryza sativa (japonica cultivar-group) cDNA... 652 0.0
gb|AU172997.1|AU172997 AU172997 Rice cDNA from immature lea... 442 e-121
gb|CA754434.1|CA754434 BR040017000_PLATE_A02_9_007.ab1 OA O... 280 2e-072
gb|CB663726.1|CB663726 OSJNEd09A16.r OSJNEd Oryza sativa (j... 228 7e-057
gb|CB637992.1|CB637992 OSJNEa05K20.f OSJNEa Oryza sativa (j... 208 7e-051
gb|CB644973.1|CB644973 OSJNEb06G15.r OSJNEb Oryza sativa (j... 200 2e-048
dbj|AP004840.3| Oryza sativa (japonica cultivar-group) geno... 167 2e-038
gb|AACV01003479.1| Oryza sativa (japonica cultivar-group) c... 167 2e-038
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 167 2e-038
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 167 2e-038
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 167 2e-038
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 167 2e-038
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 157 2e-035
dbj|AP005453.1| Oryza sativa (japonica cultivar-group) geno... 157 2e-035
gb|AACV01014694.1| Oryza sativa (japonica cultivar-group) c... 157 2e-035
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 157 2e-035
gb|CB637993.1|CB637993 OSJNEa05K20.r OSJNEa Oryza sativa (j... 155 9e-035
dbj|AG210170.1| Oryza sativa (japonica cultivar-group) DNA,... 115 8e-023
dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA,... 52 0.001
dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA,... 52 0.001
dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA,... 52 0.001
gb|AU057604.1|AU057604 AU057604 Oryza sativa mature leaf Ni... 52 0.001
gb|CB663376.1|CB663376 OSJNEd08D24.r OSJNEd Oryza sativa (j... 52 0.001
gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of ... 52 0.001
dbj|AK111778.1| Oryza sativa (japonica cultivar-group) cDNA... 52 0.001
dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.004
dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.004
dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.004
dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.004
dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.004
dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.004
dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.015
dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.015
gb|BU099222.1|BU099222 S234-XB10 Rice cold stress germinati... 48 0.015
gb|CA998003.1|CA998003 S234X_B10 Rice cold stress germinati... 48 0.015
gb|CB644275.1|CB644275 OSJNEb05G14.f OSJNEb Oryza sativa (j... 48 0.015
dbj|AK065211.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.015
dbj|AK072375.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.015
dbj|AK100561.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.015
gb|AQ841027.1|AQ841027 nbxb0081M13r CUGI Rice BAC Library O... 46 0.059
dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG210663.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG213309.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG213581.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG213722.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG213724.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG213745.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG213872.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG213959.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG214163.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG214194.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG021970.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG024540.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG024556.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG024565.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG024874.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG025267.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG025393.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG025457.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG025462.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AG025544.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB154987.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB155450.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB155496.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB157011.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB157080.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB157275.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB157330.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB157416.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB157423.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB157587.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB157668.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB157705.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB157764.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB155376.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB156990.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB157415.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
dbj|AB157466.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.059
gb|DU711782.1|DU711782 LW1258_TT57-38-1 CSIROPIFGRTT_DSTDNA... 46 0.059
gb|DU711787.1|DU711787 LW1185_TT41-340-1-4 CSIROPIFGRTT_DST... 46 0.059
gb|BF889487.1|BF889487 EST056 Subtracted cDNA library of JA... 46 0.059
dbj|AP004167.1| Oryza sativa (japonica cultivar-group) chro... 46 0.059
dbj|AP005001.1| Oryza sativa (japonica cultivar-group) chro... 46 0.059
dbj|AK069289.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.059
dbj|AK120510.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.059
dbj|AP005293.2| Oryza sativa (japonica cultivar-group) geno... 46 0.059
dbj|AP006438.3| Oryza sativa (japonica cultivar-group) geno... 46 0.059
dbj|AP005385.3| Oryza sativa (japonica cultivar-group) geno... 46 0.059
gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromo... 46 0.059
ref|NT_107078.1| Oryza sativa (japonica cultivar-group) 46 0.059
dbj|AP005090.3| Oryza sativa (japonica cultivar-group) geno... 46 0.059
gb|AACV01004849.1| Oryza sativa (japonica cultivar-group) c... 46 0.059
gb|AACV01004867.1| Oryza sativa (japonica cultivar-group) c... 46 0.059
gb|AACV01010059.1| Oryza sativa (japonica cultivar-group) c... 46 0.059
gb|AACV01020532.1| Oryza sativa (japonica cultivar-group) c... 46 0.059
ref|XM_473059.1| Oryza sativa (japonica cultivar-group), p... 46 0.059
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 46 0.059
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 46 0.059
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.059
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.059
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.059
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.059
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.059
emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC... 46 0.059
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 46 0.059
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 46 0.059
dbj|AG213230.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AG214478.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AG205322.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AB154905.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AB155607.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AB155884.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AB155930.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AB156010.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AB156464.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AB157268.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AB157360.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AB157398.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AB157628.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AB157724.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AB157742.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
dbj|AB158052.2| Oryza sativa (japonica cultivar-group) DNA,... 44 0.23
gb|DU711657.1|DU711657 LW1226_TT42-25-1-4 CSIROPIFGRTT_DSTD... 44 0.23
dbj|AK063664.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.23
dbj|AK106903.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.23
ref|XM_466559.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.23
ref|XM_466563.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.23
ref|XM_466567.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.23
>dbj|AK120521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124L22, full
insert sequence
Length = 2052
Score = 900 bits (454), Expect = 0.0
Identities = 820/942 (87%)
Strand = Plus / Minus
Query: 602 ttttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttga 661
|||||||||||||||||| | ||||||||||||||| || || |||||| | || |||||
Sbjct: 1331 ttttttgaactgcaccagaaccatggtcatgttgtcacatccctctccaccaattgttga 1272
Query: 662 tggagccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtgtt 721
|||||| ||||||||||| |||||||| |||||||| ||||| || ||||||||| | |
Sbjct: 1271 tggagctaggcatctgtcgagcactctttcgcacactgcagaaagactgctctccttctg 1212
Query: 722 tatacgctcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatc 781
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1211 tatatgctcgtggatgaaatccaccagctgttggcttgacatgcagtcccaaatgccgtc 1152
Query: 782 acatgctacaacaacaaagtcgtcatcatcgcagagctccacgacgttgatatcaggatt 841
|||||||| ||||| ||||||||| || ||||| ||||| || |||||||| ||||||||
Sbjct: 1151 acatgctaaaacaagaaagtcgtcgtcgtcgcaaagctcaacaacgttgatgtcaggatt 1092
Query: 842 ggccgtcacaatttgcttctcgggaggcaggaatttgttctgtttcaattccacgtctcc 901
|| ||||| ||||||||||| ||||||| ||||||||||||||| ||||||| |||||
Sbjct: 1091 tgcagtcacgatttgcttctcaggaggcaagaatttgttctgtttaaattccatatctcc 1032
Query: 902 aattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccctgc 961
|||||| |||| |||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct: 1031 aattgctcttgtcaagtttaaacttccatttattcgtcccatatgaatgaaaccccctgc 972
Query: 962 tttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattgta 1021
||| | ||| || |||||||||||| |||||||||| |||||||| || || ||||||||
Sbjct: 971 ttttactattctgtctctctcagcttcaagctctggcttgtggtctcttgacaaattgta 912
Query: 1022 tgccttcccaccccttgaaataacacatcgggaatcaccagcatttgccacaacaagttg 1081
||||| ||| |||| ||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 911 tgcctggccagccctagaaataacacaacgggaatcaccagcgttcgccacaacaagttg 852
Query: 1082 ggtgtttcttattaatgctacacacgctgtactcccacatgttggcccagcaaagtcaga 1141
| | |||||||||| |||||||| ||||| | || |||||||||||||| || || ||
Sbjct: 851 gttatttcttattagcgctacacatgctgtgcatccgcatgttggcccagcgaaatcgga 792
Query: 1142 gtgaggtccctcctctgaagcccaatcatcttgttgattatttgaatcactgccccttgg 1201
||| |||||||| || ||| ||||||||||||| |||||| ||||||||||| || ||
Sbjct: 791 gtggggtccctcttcgaaagaccaatcatcttgtccattattcgaatcactgcctctcgg 732
Query: 1202 agaccaaatcaatccttctatcataccactaaacttgtttattttgtctccaagtgcaga 1261
|||||||||||| ||||| |||||||||| || ||||||||| || || |||||||||||
Sbjct: 731 agaccaaatcaacccttcaatcataccaccaatcttgtttatcttatccccaagtgcaga 672
Query: 1262 tagttctcgccaacctctctgtccttgcatcatttcatccattctgaagaaagctctatg 1321
|||||||| ||| |||||||||||| |||||||||| ||||| |||||||||||||||||
Sbjct: 671 tagttctctccagcctctctgtcctcgcatcatttcgtccatcctgaagaaagctctatg 612
Query: 1322 gacagcagcgcctaggtcaccagttgaataggcttcgcttttgaggacttgaccatgcag 1381
||||||| ||||| |||||||| |||||||||||| ||| |||| |||||| | |
Sbjct: 611 aacagcagtgcctaagtcaccagctgaataggcttcacttctgagaacttgagagcgtaa 552
Query: 1382 atattttgcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaagaa 1441
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||
Sbjct: 551 atattttgcacagaatttggcaaccactcttcctccatggccatcaaaaacaccaaggaa 492
Query: 1442 tgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgcca 1501
| |||||| | ||||||| ||||||||||||||||||||||||| || |||| |||||
Sbjct: 491 cgatgtctcattgtcaagatttagcaatgctgaatgagcatcttccttgtttgcacgcca 432
Query: 1502 tccttgcatagatgaaagacctaacttaagtctatcattttc 1543
|||||||||||| |||||||| | ||||| ||||||||||
Sbjct: 431 tccttgcatagacgaaagaccaagtttaagcttatcattttc 390
>dbj|AK112023.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-H05, full
insert sequence
Length = 1693
Score = 811 bits (409), Expect = 0.0
Identities = 826/965 (85%)
Strand = Plus / Minus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||| |||||||| |||||||||||||| || |||||| | | |||||||||
Sbjct: 1278 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 1219
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtgtttata 725
||||||||||| || |||||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct: 1218 gccaggcatctatctagcactctttcgcataccgcagaaaggctgctctctgtgtttatg 1159
Query: 726 cgctcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacat 785
| |||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 1158 tgttcgtggatgaaatcaaccagctgttggctagacatgcagtcccagatgccatcacat 1099
Query: 786 gctacaacaacaaagtcgtcatcatcgcagagctccacgacgttgatatcaggattggcc 845
|||| ||||| |||||| |||||||| || |||||||| |||||| ||||| || ||
Sbjct: 1098 gctaaaacaagaaagtcatcatcatcacaaagctccactgtgttgatgtcagggtttgca 1039
Query: 846 gtcacaatttgcttctcgggaggcaggaatttgttctgtttcaattccacgtctccaatt 905
|| | |||||||| || |||| || ||| ||||||||||| ||||| | ||| ||||||
Sbjct: 1038 gttaacatttgcttatcaggagacaagaacttgttctgtttaaattcaatgtcaccaatt 979
Query: 906 gcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccctgctttc 965
|||||||||||||||| | ||||||||||||||||||| || ||| | || ||||||||
Sbjct: 978 gcccttgacaagtttatagttccatttactcgtcccatctgtatgtaccctcctgctttt 919
Query: 966 attatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattgtatgcc 1025
| ||| ||||||||||| ||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 918 agtattctttctctctctgcttcaagctctggtttgtggtctcttgataaattgtatgcc 859
Query: 1026 ttcccaccccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtg 1085
| ||| |||||| |||||||| |||||||||||||||||||| |||||||||||| |
Sbjct: 858 tgaccattccttgagataacacagcgggaatcaccagcatttgcgacaacaagttggcta 799
Query: 1086 tttcttattaatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtga 1145
||||||| || ||| ||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 798 tttcttactattgcaacacaagctgtgctcccacaggttggcccagcaaagtcagagtgt 739
Query: 1146 ggtccctcctctgaagcccaatcatcttgttgattatttgaatcactgccccttggagac 1205
|| ||||| || ||||||||||||| ||||||| ||||||||||||||| |||||||||
Sbjct: 738 ggcccctcttcaaaagcccaatcatcgtgttgatcatttgaatcactgcctcttggagac 679
Query: 1206 caaatcaatccttctatcataccactaaacttgtttattttgtctccaagtgcagatagt 1265
|| ||||| ||||||||||| ||||||| || |||||| || ||||||||||| ||||
Sbjct: 678 cagatcaagccttctatcatgccactaatctggtttatcttatctccaagtgcttgtagt 619
Query: 1266 tctcgccaacctctctgtccttgcatcatttcatccattctgaagaaagctctatggaca 1325
|||||||| ||||| || ||| ||||||| ||||||||||| ||||||||| ||||| |
Sbjct: 618 tctcgccagcctctttgacctcgcatcatctcatccattctaaagaaagctttatgggct 559
Query: 1326 gcagcgcctaggtcaccagttgaataggcttcgcttttgaggacttgaccatgcagatat 1385
||| ||| |||||||| | ||||||||| || ||| |||| |||| | |||||||||
Sbjct: 558 gcattgcccaggtcacctgctgaataggcctcacttctgagaacttctctgtgcagatat 499
Query: 1386 tttgcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaagaatgct 1445
|||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||| |
Sbjct: 498 tttgcacagaatttagcaaccactcttcctccatgtccatcgaaaacaccaaagaatgat 439
Query: 1446 gtctcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgccatcct 1505
|| || |||| | ||||||||| |||||||||||||| ||||| ||||| |||||||||
Sbjct: 438 gtgtcattatcgatatctagcaaagctgaatgagcatcctccatagttgcacgccatcct 379
Query: 1506 tgcatagatgaaagacctaacttaagtctatcattttctccattttcagatagcttgtca 1565
||||||||||| || || || ||||| |||||||||| |||| |||||||||||| ||
Sbjct: 378 tgcatagatgagagtccaaatttaagcttatcattttcgccatcttcagatagcttctcg 319
Query: 1566 gtttt 1570
|||||
Sbjct: 318 gtttt 314
>dbj|AK120711.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001L10, full
insert sequence
Length = 1818
Score = 652 bits (329), Expect = 0.0
Identities = 680/797 (85%)
Strand = Plus / Minus
Query: 774 atgccatcacatgctacaacaacaaagtcgtcatcatcgcagagctccacgacgttgata 833
|||||||||||||||| ||||| |||||| |||||||| || |||||||| ||||||
Sbjct: 1089 atgccatcacatgctaaaacaagaaagtcatcatcatcacaaagctccactgtgttgatg 1030
Query: 834 tcaggattggccgtcacaatttgcttctcgggaggcaggaatttgttctgtttcaattcc 893
||||| || || || | |||||||| || |||| || ||| ||||||||||| |||||
Sbjct: 1029 tcagggtttgcagttaacatttgcttatcaggagacaagaacttgttctgtttaaattca 970
Query: 894 acgtctccaattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaag 953
| ||| |||||||||||||||||||||| | ||||||||||||||||||| || ||| |
Sbjct: 969 atgtcaccaattgcccttgacaagtttatagttccatttactcgtcccatctgtatgtac 910
Query: 954 ccccctgctttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgat 1013
|| |||||||| | ||| ||||||||||| ||| ||||||||||||||||||| || |||
Sbjct: 909 cctcctgcttttagtattctttctctctctgcttcaagctctggtttgtggtctcttgat 850
Query: 1014 aaattgtatgccttcccaccccttgaaataacacatcgggaatcaccagcatttgccaca 1073
||||||||||||| ||| |||||| |||||||| |||||||||||||||||||| |||
Sbjct: 849 aaattgtatgcctgaccattccttgagataacacagcgggaatcaccagcatttgcgaca 790
Query: 1074 acaagttgggtgtttcttattaatgctacacacgctgtactcccacatgttggcccagca 1133
||||||||| | ||||||| || ||| ||||| ||||| |||||||| ||||||||||||
Sbjct: 789 acaagttggctatttcttactattgcaacacaagctgtgctcccacaggttggcccagca 730
Query: 1134 aagtcagagtgaggtccctcctctgaagcccaatcatcttgttgattatttgaatcactg 1193
||||||||||| || ||||| || ||||||||||||| ||||||| |||||||||||||
Sbjct: 729 aagtcagagtgtggcccctcttcaaaagcccaatcatcgtgttgatcatttgaatcactg 670
Query: 1194 ccccttggagaccaaatcaatccttctatcataccactaaacttgtttattttgtctcca 1253
|| ||||||||||| ||||| ||||||||||| ||||||| || |||||| || ||||||
Sbjct: 669 cctcttggagaccagatcaagccttctatcatgccactaatctggtttatcttatctcca 610
Query: 1254 agtgcagatagttctcgccaacctctctgtccttgcatcatttcatccattctgaagaaa 1313
||||| |||||||||||| ||||| || ||| ||||||| ||||||||||| ||||||
Sbjct: 609 agtgcttgtagttctcgccagcctctttgacctcgcatcatctcatccattctaaagaaa 550
Query: 1314 gctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttgaggacttga 1373
||| ||||| | ||| ||| |||||||| | ||||||||| || ||| |||| ||||
Sbjct: 549 gctttatgggctgcattgcccaggtcacctgctgaataggcctcacttctgagaacttct 490
Query: 1374 ccatgcagatattttgcacagaatttggcaacgactcttcctccatgaccatcaaaaaca 1433
| ||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 489 ctgtgcagatattttgcacagaatttagcaaccactcttcctccatgtccatcgaaaaca 430
Query: 1434 ccaaagaatgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccatggtt 1493
|||||||||| ||| || |||| | ||||||||| |||||||||||||| ||||| |||
Sbjct: 429 ccaaagaatgatgtgtcattatcgatatctagcaaagctgaatgagcatcctccatagtt 370
Query: 1494 gctcgccatccttgcatagatgaaagacctaacttaagtctatcattttctccattttca 1553
|| |||||||||||||||||||| || || || ||||| |||||||||| |||| ||||
Sbjct: 369 gcacgccatccttgcatagatgagagtccaaatttaagcttatcattttcgccatcttca 310
Query: 1554 gatagcttgtcagtttt 1570
|||||||| || |||||
Sbjct: 309 gatagcttctcggtttt 293
Score = 163 bits (82), Expect = 4e-037
Identities = 145/166 (87%)
Strand = Plus / Minus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||| |||||||| |||||||||||||| || |||||| | | |||||||||
Sbjct: 1400 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 1341
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtgtttata 725
||||||||||| || |||||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct: 1340 gccaggcatctatctagcactctttcgcataccgcagaaaggctgctctctgtgtttatg 1281
Query: 726 cgctcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
| |||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 1280 tgttcgtggatgaaatcaaccagctgttggctagacatgcagtccc 1235
>gb|AU172997.1|AU172997 AU172997 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60339, mRNA sequence
Length = 446
Score = 442 bits (223), Expect = e-121
Identities = 376/427 (88%)
Strand = Plus / Minus
Query: 727 gctcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatg 786
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 gctcgtggatgaaatccaccagctgttggcttgacatgcagtcccaaatgccgtcacatg 383
Query: 787 ctacaacaacaaagtcgtcatcatcgcagagctccacgacgttgatatcaggattggccg 846
||| ||||| ||||||||| || ||||| ||||| || |||||||| |||||||| || |
Sbjct: 382 ctaaaacaagaaagtcgtcgtcgtcgcaaagctcaacaacgttgatgtcaggatttgcag 323
Query: 847 tcacaatttgcttctcgggaggcaggaatttgttctgtttcaattccacgtctccaattg 906
|||| ||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 322 tcacgatttgcttctcaggaggcaagaatttgttctgtttaaattccatatctccaattg 263
Query: 907 cccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccctgctttca 966
| |||| |||||||||||||||||||| |||||||||||| ||||| ||||||||||| |
Sbjct: 262 ctcttgtcaagtttaaacttccatttattcgtcccatatgaatgaaaccccctgctttta 203
Query: 967 ttatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattgtatgcct 1026
||| || |||||||||||| |||||||||| |||||||| || || |||||||||||||
Sbjct: 202 ctattctgtctctctcagcttcaagctctggcttgtggtctcttgacaaattgtatgcct 143
Query: 1027 tcccaccccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgt 1086
||| |||| ||||||||||| |||||||||||||| || ||||||||||||||| | |
Sbjct: 142 ggccagccctagaaataacacaacgggaatcaccagcgttcgccacaacaagttggttat 83
Query: 1087 ttcttattaatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtgag 1146
||||||||| |||||||| ||||| | || ||||||||||||||||| || ||||| |
Sbjct: 82 ttcttattagcgctacacatgctgtgcatccgcatgttggcccagcaaaatcggagtggg 23
Query: 1147 gtccctc 1153
|||||||
Sbjct: 22 gtccctc 16
>gb|CA754434.1|CA754434 BR040017000_PLATE_A02_9_007.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040017000_PLATE_A02_9_007.ab1 similar to (AF213455)
protein phosphatase type-2C [Zea mays], mRNA sequence
Length = 624
Score = 280 bits (141), Expect = 2e-072
Identities = 306/362 (84%)
Strand = Plus / Minus
Query: 1209 atcaatccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttct 1268
||||| ||||||||||| ||||||| || |||||| || ||||||||||| |||||||
Sbjct: 624 atcaagccttctatcatgccactaatctggtttatcttatctccaagtgctngtagttct 565
Query: 1269 cgccaacctctctgtccttgcatcatttcatccattctgaagaaagctctatggacagca 1328
||||| ||||| || ||| ||||||| ||||||||||| ||||||||| ||||| | |||
Sbjct: 564 cgccagcctctttgacctcgcatcatctcatccattctaaagaaagctttatgggctgca 505
Query: 1329 gcgcctaggtcaccagttgaataggcttcgcttttgaggacttgaccatgcagatatttt 1388
||| |||||||| | ||||||||| || ||| |||| |||| | ||||||||||||
Sbjct: 504 tngcccaggtcacctgctgaataggcctcacttctgagaacttctctgtgcagatatttt 445
Query: 1389 gcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaagaatgctgtc 1448
||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||| |||
Sbjct: 444 gcacagaatttagcaaccactcttcctccatgtccatcgaaaacaccaaagaatgatgtg 385
Query: 1449 tcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgccatccttgc 1508
|| |||| | ||||||||| |||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 384 tcattatcgatatctagcaaagctgaatgagcatcctccatagttgcacgccatccttgc 325
Query: 1509 atagatgaaagacctaacttaagtctatcattttctccattttcagatagcttgtcagtt 1568
|||||||| || || || ||||| |||||| ||| |||| |||||||||||| || |||
Sbjct: 324 atagatgagagtccaaatttaagcttatcatnttcgccatcttcagatagcttctcggtt 265
Query: 1569 tt 1570
||
Sbjct: 264 tt 263
>gb|CB663726.1|CB663726 OSJNEd09A16.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd09A16 3', mRNA sequence
Length = 716
Score = 228 bits (115), Expect = 7e-057
Identities = 259/306 (84%), Gaps = 1/306 (0%)
Strand = Plus / Plus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||| |||||||| |||||||||||||| || |||||| | | |||||||||
Sbjct: 411 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 470
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtgtttata 725
||||||||||| || |||||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct: 471 gccaggcatctatctagcactctttcgcataccgcagaaaggctgctctctgtgtttatg 530
Query: 726 cgctcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacat 785
| |||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 531 tgttcgtggatgaaatcaaccagctgttggctagacatgcagtcccagatgccatcacat 590
Query: 786 gctacaacaacaaagtcgtcatcatcgcagagctccacgacgttgatatcaggattggcc 845
|||| ||||| |||||| |||||||| || |||||||| |||||| ||||| || ||
Sbjct: 591 gctanaacaagaaagtcatcatcatcacaaagctccactgtgttgatgtcagggtttgca 650
Query: 846 gtcacaatttgcttctcgggaggcaggaatttgttctgttt-caattccacgtctccaat 904
|| | |||||||| || |||| || ||| ||||||||||| ||||| | ||| |||||
Sbjct: 651 gttaacatttgcttatcaggagacaagaacttgttctgtttaaaattcaatgtcaccaat 710
Query: 905 tgccct 910
||||||
Sbjct: 711 tgccct 716
>gb|CB637992.1|CB637992 OSJNEa05K20.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa05K20 5', mRNA sequence
Length = 546
Score = 208 bits (105), Expect = 7e-051
Identities = 232/275 (84%)
Strand = Plus / Minus
Query: 1296 tcatccattctgaagaaagctctatggacagcagcgcctaggtcaccagttgaataggct 1355
||||||||| | ||||||||| ||||| | ||| || |||||||| | |||||||||
Sbjct: 545 tcatccattntaaagaaagctttatgggctgcattgcncaggtcacctgctgaataggcc 486
Query: 1356 tcgcttttgaggacttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|| ||| |||| |||| | ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 485 tcacttctgagaacttctctgtgcagatattttgcacagaatttagcaaccactcttcct 426
Query: 1416 ccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgctgaa 1475
||||| ||||| |||||||||||||||| ||| || |||| | ||||||||| ||||||
Sbjct: 425 ccatgtccatcgaaaacaccaaagaatgatgtgtcattatcgatatctagcaaagctgaa 366
Query: 1476 tgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtcta 1535
|||||||| ||||| ||||| |||||||||||||||||||| || || || ||||| ||
Sbjct: 365 tgagcatcctccatagttgcacgccatccttgcatagatgagagtccaaatttaagctta 306
Query: 1536 tcattttctccattttcagatagcttgtcagtttt 1570
|||||||| |||| |||||||||||| || |||||
Sbjct: 305 tcattttcgccatcttcagatagcttctcggtttt 271
>gb|CB644973.1|CB644973 OSJNEb06G15.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06G15 3', mRNA sequence
Length = 773
Score = 200 bits (101), Expect = 2e-048
Identities = 173/197 (87%)
Strand = Plus / Plus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||| |||||||| |||||||||||||| || |||||| | | |||||||||
Sbjct: 419 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 478
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtgtttata 725
||||||||||| || |||||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct: 479 gccaggcatctatctagcactctttcgcataccgcagaaaggctgctctctgtgtttatg 538
Query: 726 cgctcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacat 785
| |||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 539 tgttcgtggatgaaatcaaccagctgttggctagacatgcagtcccagatgccatcacat 598
Query: 786 gctacaacaacaaagtc 802
|||| ||||| ||||||
Sbjct: 599 gctaaaacaagaaagtc 615
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0544B02
Length = 156339
Score = 167 bits (84), Expect = 2e-038
Identities = 132/148 (89%)
Strand = Plus / Minus
Query: 1163 ccaatcatcttgttgattatttgaatcactgccccttggagaccaaatcaatccttctat 1222
||||||||||||| |||||| ||||||||||| || |||||||||||||| ||||| ||
Sbjct: 136312 ccaatcatcttgtccattattcgaatcactgcctctcggagaccaaatcaacccttcaat 136253
Query: 1223 cataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaacctctctg 1282
|||||||| || ||||||||| || |||||||||||||||||||||| ||| ||||||||
Sbjct: 136252 cataccaccaatcttgtttatcttatctccaagtgcagatagttctctccagcctctctg 136193
Query: 1283 tccttgcatcatttcatccattctgaag 1310
|||| |||||||||| ||||| ||||||
Sbjct: 136192 tcctcgcatcatttcgtccatcctgaag 136165
Score = 141 bits (71), Expect = 1e-030
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 900 ccaattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccct 959
|||||||| |||| |||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct: 136743 ccaattgctcttgtcaagtttaaacttccatttattcgtcccatatgaatgaaaccccct 136684
Query: 960 gctttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattg 1019
||||| | ||| || |||||||||||| |||||||||| |||||||| || || ||||||
Sbjct: 136683 gcttttactattctgtctctctcagcttcaagctctggcttgtggtctcttgacaaattg 136624
Query: 1020 tatgcct 1026
|||||||
Sbjct: 136623 tatgcct 136617
Score = 117 bits (59), Expect = 2e-023
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 1305 ctgaagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttg 1364
||||||||||||||||| ||||||| ||||| |||||||| |||||||||||| ||| ||
Sbjct: 136058 ctgaagaaagctctatgaacagcagtgcctaagtcaccagctgaataggcttcacttctg 135999
Query: 1365 aggacttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|| |||||| || | |||||||||||||||||||||||| |||||||||
Sbjct: 135998 agaacttgagagtgtaaatattttgcacagaatttggcaaccactcttcct 135948
Score = 115 bits (58), Expect = 8e-023
Identities = 100/114 (87%)
Strand = Plus / Minus
Query: 603 tttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgat 662
||||||||||||||||| | ||||||||||||||| || || |||||| | || ||||||
Sbjct: 137509 tttttgaactgcaccagaaccatggtcatgttgtcacatccctctccaccaattgttgat 137450
Query: 663 ggagccaggcatctgtccagcactctctcgcacacggcagacaggctgctctcc 716
||||| ||||||||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 137449 ggagctaggcatctgtcgagcactctttcgcacactgcagaaagactgctctcc 137396
Score = 111 bits (56), Expect = 1e-021
Identities = 104/120 (86%)
Strand = Plus / Minus
Query: 1033 cccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttctta 1092
|||| ||||||||||| |||||||||||||| || ||||||||||||||| | |||||||
Sbjct: 136521 ccctagaaataacacaacgggaatcaccagcgttcgccacaacaagttggttatttctta 136462
Query: 1093 ttaatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtgaggtccct 1152
||| |||||||| ||||| | || ||||||||||||||||| || ||||| |||||||
Sbjct: 136461 ttagcgctacacatgctgtgcatccgcatgttggcccagcaaaatcggagtggggtccct 136402
Score = 83.8 bits (42), Expect = 3e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 722 tatacgctcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
|||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 137285 tatatgctcgtggatgaaatccaccagctgttggcttgacatgcagtccc 137236
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 825 acgttgatatcaggattggccgtcacaatttgcttctcgggaggcaggaatttgttctgt 884
|||||||| |||||||| || ||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 136896 acgttgatgtcaggatttgcagtcacgatttgcttctcaggaggcaagaatttgttctgt 136837
Query: 885 ttcaattcca 894
|| |||||||
Sbjct: 136836 ttaaattcca 136827
Score = 73.8 bits (37), Expect = 3e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
|||||||| |||||||||||||||||||| | |||||| | ||||||| ||||||||||
Sbjct: 135825 cctccatggccatcaaaaacaccaaagaacgatgtctcattgtcaagatttagcaatgct 135766
Query: 1473 gaatg 1477
|||||
Sbjct: 135765 gaatg 135761
Score = 67.9 bits (34), Expect = 2e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
||||||||||||| |||| ||||||||||||||||| |||||||| | ||||| ||||
Sbjct: 135307 agcatcttccatgtttgcacgccatccttgcatagacgaaagaccaagtttaagcttatc 135248
Query: 1538 attttc 1543
||||||
Sbjct: 135247 attttc 135242
>gb|AACV01003479.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003479, whole
genome shotgun sequence
Length = 53225
Score = 167 bits (84), Expect = 2e-038
Identities = 132/148 (89%)
Strand = Plus / Minus
Query: 1163 ccaatcatcttgttgattatttgaatcactgccccttggagaccaaatcaatccttctat 1222
||||||||||||| |||||| ||||||||||| || |||||||||||||| ||||| ||
Sbjct: 48105 ccaatcatcttgtccattattcgaatcactgcctctcggagaccaaatcaacccttcaat 48046
Query: 1223 cataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaacctctctg 1282
|||||||| || ||||||||| || |||||||||||||||||||||| ||| ||||||||
Sbjct: 48045 cataccaccaatcttgtttatcttatctccaagtgcagatagttctctccagcctctctg 47986
Query: 1283 tccttgcatcatttcatccattctgaag 1310
|||| |||||||||| ||||| ||||||
Sbjct: 47985 tcctcgcatcatttcgtccatcctgaag 47958
Score = 141 bits (71), Expect = 1e-030
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 900 ccaattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccct 959
|||||||| |||| |||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct: 48536 ccaattgctcttgtcaagtttaaacttccatttattcgtcccatatgaatgaaaccccct 48477
Query: 960 gctttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattg 1019
||||| | ||| || |||||||||||| |||||||||| |||||||| || || ||||||
Sbjct: 48476 gcttttactattctgtctctctcagcttcaagctctggcttgtggtctcttgacaaattg 48417
Query: 1020 tatgcct 1026
|||||||
Sbjct: 48416 tatgcct 48410
Score = 117 bits (59), Expect = 2e-023
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 1305 ctgaagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttg 1364
||||||||||||||||| ||||||| ||||| |||||||| |||||||||||| ||| ||
Sbjct: 47851 ctgaagaaagctctatgaacagcagtgcctaagtcaccagctgaataggcttcacttctg 47792
Query: 1365 aggacttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|| |||||| || | |||||||||||||||||||||||| |||||||||
Sbjct: 47791 agaacttgagagtgtaaatattttgcacagaatttggcaaccactcttcct 47741
Score = 115 bits (58), Expect = 8e-023
Identities = 100/114 (87%)
Strand = Plus / Minus
Query: 603 tttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgat 662
||||||||||||||||| | ||||||||||||||| || || |||||| | || ||||||
Sbjct: 49302 tttttgaactgcaccagaaccatggtcatgttgtcacatccctctccaccaattgttgat 49243
Query: 663 ggagccaggcatctgtccagcactctctcgcacacggcagacaggctgctctcc 716
||||| ||||||||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 49242 ggagctaggcatctgtcgagcactctttcgcacactgcagaaagactgctctcc 49189
Score = 111 bits (56), Expect = 1e-021
Identities = 104/120 (86%)
Strand = Plus / Minus
Query: 1033 cccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttctta 1092
|||| ||||||||||| |||||||||||||| || ||||||||||||||| | |||||||
Sbjct: 48314 ccctagaaataacacaacgggaatcaccagcgttcgccacaacaagttggttatttctta 48255
Query: 1093 ttaatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtgaggtccct 1152
||| |||||||| ||||| | || ||||||||||||||||| || ||||| |||||||
Sbjct: 48254 ttagcgctacacatgctgtgcatccgcatgttggcccagcaaaatcggagtggggtccct 48195
Score = 83.8 bits (42), Expect = 3e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 722 tatacgctcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
|||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 49078 tatatgctcgtggatgaaatccaccagctgttggcttgacatgcagtccc 49029
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 825 acgttgatatcaggattggccgtcacaatttgcttctcgggaggcaggaatttgttctgt 884
|||||||| |||||||| || ||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 48689 acgttgatgtcaggatttgcagtcacgatttgcttctcaggaggcaagaatttgttctgt 48630
Query: 885 ttcaattcca 894
|| |||||||
Sbjct: 48629 ttaaattcca 48620
Score = 73.8 bits (37), Expect = 3e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
|||||||| |||||||||||||||||||| | |||||| | ||||||| ||||||||||
Sbjct: 47618 cctccatggccatcaaaaacaccaaagaacgatgtctcattgtcaagatttagcaatgct 47559
Query: 1473 gaatg 1477
|||||
Sbjct: 47558 gaatg 47554
Score = 67.9 bits (34), Expect = 2e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
||||||||||||| |||| ||||||||||||||||| |||||||| | ||||| ||||
Sbjct: 47100 agcatcttccatgtttgcacgccatccttgcatagacgaaagaccaagtttaagcttatc 47041
Query: 1538 attttc 1543
||||||
Sbjct: 47040 attttc 47035
>ref|NT_107176.1| Oryza sativa (japonica cultivar-group)
Length = 1593847
Score = 167 bits (84), Expect = 2e-038
Identities = 132/148 (89%)
Strand = Plus / Minus
Query: 1163 ccaatcatcttgttgattatttgaatcactgccccttggagaccaaatcaatccttctat 1222
||||||||||||| |||||| ||||||||||| || |||||||||||||| ||||| ||
Sbjct: 1418596 ccaatcatcttgtccattattcgaatcactgcctctcggagaccaaatcaacccttcaat 1418537
Query: 1223 cataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaacctctctg 1282
|||||||| || ||||||||| || |||||||||||||||||||||| ||| ||||||||
Sbjct: 1418536 cataccaccaatcttgtttatcttatctccaagtgcagatagttctctccagcctctctg 1418477
Query: 1283 tccttgcatcatttcatccattctgaag 1310
|||| |||||||||| ||||| ||||||
Sbjct: 1418476 tcctcgcatcatttcgtccatcctgaag 1418449
Score = 141 bits (71), Expect = 1e-030
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 900 ccaattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccct 959
|||||||| |||| |||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct: 1419027 ccaattgctcttgtcaagtttaaacttccatttattcgtcccatatgaatgaaaccccct 1418968
Query: 960 gctttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattg 1019
||||| | ||| || |||||||||||| |||||||||| |||||||| || || ||||||
Sbjct: 1418967 gcttttactattctgtctctctcagcttcaagctctggcttgtggtctcttgacaaattg 1418908
Query: 1020 tatgcct 1026
|||||||
Sbjct: 1418907 tatgcct 1418901
Score = 117 bits (59), Expect = 2e-023
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 1305 ctgaagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttg 1364
||||||||||||||||| ||||||| ||||| |||||||| |||||||||||| ||| ||
Sbjct: 1418342 ctgaagaaagctctatgaacagcagtgcctaagtcaccagctgaataggcttcacttctg 1418283
Query: 1365 aggacttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|| |||||| || | |||||||||||||||||||||||| |||||||||
Sbjct: 1418282 agaacttgagagtgtaaatattttgcacagaatttggcaaccactcttcct 1418232
Score = 115 bits (58), Expect = 8e-023
Identities = 100/114 (87%)
Strand = Plus / Minus
Query: 603 tttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgat 662
||||||||||||||||| | ||||||||||||||| || || |||||| | || ||||||
Sbjct: 1419793 tttttgaactgcaccagaaccatggtcatgttgtcacatccctctccaccaattgttgat 1419734
Query: 663 ggagccaggcatctgtccagcactctctcgcacacggcagacaggctgctctcc 716
||||| ||||||||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 1419733 ggagctaggcatctgtcgagcactctttcgcacactgcagaaagactgctctcc 1419680
Score = 111 bits (56), Expect = 1e-021
Identities = 104/120 (86%)
Strand = Plus / Minus
Query: 1033 cccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttctta 1092
|||| ||||||||||| |||||||||||||| || ||||||||||||||| | |||||||
Sbjct: 1418805 ccctagaaataacacaacgggaatcaccagcgttcgccacaacaagttggttatttctta 1418746
Query: 1093 ttaatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtgaggtccct 1152
||| |||||||| ||||| | || ||||||||||||||||| || ||||| |||||||
Sbjct: 1418745 ttagcgctacacatgctgtgcatccgcatgttggcccagcaaaatcggagtggggtccct 1418686
Score = 83.8 bits (42), Expect = 3e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 722 tatacgctcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
|||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1419569 tatatgctcgtggatgaaatccaccagctgttggcttgacatgcagtccc 1419520
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 825 acgttgatatcaggattggccgtcacaatttgcttctcgggaggcaggaatttgttctgt 884
|||||||| |||||||| || ||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 1419180 acgttgatgtcaggatttgcagtcacgatttgcttctcaggaggcaagaatttgttctgt 1419121
Query: 885 ttcaattcca 894
|| |||||||
Sbjct: 1419120 ttaaattcca 1419111
Score = 73.8 bits (37), Expect = 3e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
|||||||| |||||||||||||||||||| | |||||| | ||||||| ||||||||||
Sbjct: 1418109 cctccatggccatcaaaaacaccaaagaacgatgtctcattgtcaagatttagcaatgct 1418050
Query: 1473 gaatg 1477
|||||
Sbjct: 1418049 gaatg 1418045
Score = 67.9 bits (34), Expect = 2e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
||||||||||||| |||| ||||||||||||||||| |||||||| | ||||| ||||
Sbjct: 1417591 agcatcttccatgtttgcacgccatccttgcatagacgaaagaccaagtttaagcttatc 1417532
Query: 1538 attttc 1543
||||||
Sbjct: 1417531 attttc 1417526
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 167 bits (84), Expect = 2e-038
Identities = 132/148 (89%)
Strand = Plus / Minus
Query: 1163 ccaatcatcttgttgattatttgaatcactgccccttggagaccaaatcaatccttctat 1222
||||||||||||| |||||| ||||||||||| || |||||||||||||| ||||| ||
Sbjct: 4534282 ccaatcatcttgtccattattcgaatcactgcctctcggagaccaaatcaacccttcaat 4534223
Query: 1223 cataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaacctctctg 1282
|||||||| || ||||||||| || |||||||||||||||||||||| ||| ||||||||
Sbjct: 4534222 cataccaccaatcttgtttatcttatctccaagtgcagatagttctctccagcctctctg 4534163
Query: 1283 tccttgcatcatttcatccattctgaag 1310
|||| |||||||||| ||||| ||||||
Sbjct: 4534162 tcctcgcatcatttcgtccatcctgaag 4534135
Score = 141 bits (71), Expect = 1e-030
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 900 ccaattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccct 959
|||||||| |||| |||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct: 4534713 ccaattgctcttgtcaagtttaaacttccatttattcgtcccatatgaatgaaaccccct 4534654
Query: 960 gctttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattg 1019
||||| | ||| || |||||||||||| |||||||||| |||||||| || || ||||||
Sbjct: 4534653 gcttttactattctgtctctctcagcttcaagctctggcttgtggtctcttgacaaattg 4534594
Query: 1020 tatgcct 1026
|||||||
Sbjct: 4534593 tatgcct 4534587
Score = 117 bits (59), Expect = 2e-023
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 1305 ctgaagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttg 1364
||||||||||||||||| ||||||| ||||| |||||||| |||||||||||| ||| ||
Sbjct: 4534028 ctgaagaaagctctatgaacagcagtgcctaagtcaccagctgaataggcttcacttctg 4533969
Query: 1365 aggacttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|| |||||| || | |||||||||||||||||||||||| |||||||||
Sbjct: 4533968 agaacttgagagtgtaaatattttgcacagaatttggcaaccactcttcct 4533918
Score = 115 bits (58), Expect = 8e-023
Identities = 100/114 (87%)
Strand = Plus / Minus
Query: 603 tttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgat 662
||||||||||||||||| | ||||||||||||||| || || |||||| | || ||||||
Sbjct: 4535479 tttttgaactgcaccagaaccatggtcatgttgtcacatccctctccaccaattgttgat 4535420
Query: 663 ggagccaggcatctgtccagcactctctcgcacacggcagacaggctgctctcc 716
||||| ||||||||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 4535419 ggagctaggcatctgtcgagcactctttcgcacactgcagaaagactgctctcc 4535366
Score = 111 bits (56), Expect = 1e-021
Identities = 104/120 (86%)
Strand = Plus / Minus
Query: 1033 cccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttctta 1092
|||| ||||||||||| |||||||||||||| || ||||||||||||||| | |||||||
Sbjct: 4534491 ccctagaaataacacaacgggaatcaccagcgttcgccacaacaagttggttatttctta 4534432
Query: 1093 ttaatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtgaggtccct 1152
||| |||||||| ||||| | || ||||||||||||||||| || ||||| |||||||
Sbjct: 4534431 ttagcgctacacatgctgtgcatccgcatgttggcccagcaaaatcggagtggggtccct 4534372
Score = 83.8 bits (42), Expect = 3e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 722 tatacgctcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
|||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4535255 tatatgctcgtggatgaaatccaccagctgttggcttgacatgcagtccc 4535206
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 825 acgttgatatcaggattggccgtcacaatttgcttctcgggaggcaggaatttgttctgt 884
|||||||| |||||||| || ||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 4534866 acgttgatgtcaggatttgcagtcacgatttgcttctcaggaggcaagaatttgttctgt 4534807
Query: 885 ttcaattcca 894
|| |||||||
Sbjct: 4534806 ttaaattcca 4534797
Score = 73.8 bits (37), Expect = 3e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
|||||||| |||||||||||||||||||| | |||||| | ||||||| ||||||||||
Sbjct: 4533795 cctccatggccatcaaaaacaccaaagaacgatgtctcattgtcaagatttagcaatgct 4533736
Query: 1473 gaatg 1477
|||||
Sbjct: 4533735 gaatg 4533731
Score = 67.9 bits (34), Expect = 2e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
||||||||||||| |||| ||||||||||||||||| |||||||| | ||||| ||||
Sbjct: 4533277 agcatcttccatgtttgcacgccatccttgcatagacgaaagaccaagtttaagcttatc 4533218
Query: 1538 attttc 1543
||||||
Sbjct: 4533217 attttc 4533212
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 167 bits (84), Expect = 2e-038
Identities = 132/148 (89%)
Strand = Plus / Minus
Query: 1163 ccaatcatcttgttgattatttgaatcactgccccttggagaccaaatcaatccttctat 1222
||||||||||||| |||||| ||||||||||| || |||||||||||||| ||||| ||
Sbjct: 4534282 ccaatcatcttgtccattattcgaatcactgcctctcggagaccaaatcaacccttcaat 4534223
Query: 1223 cataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaacctctctg 1282
|||||||| || ||||||||| || |||||||||||||||||||||| ||| ||||||||
Sbjct: 4534222 cataccaccaatcttgtttatcttatctccaagtgcagatagttctctccagcctctctg 4534163
Query: 1283 tccttgcatcatttcatccattctgaag 1310
|||| |||||||||| ||||| ||||||
Sbjct: 4534162 tcctcgcatcatttcgtccatcctgaag 4534135
Score = 141 bits (71), Expect = 1e-030
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 900 ccaattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccct 959
|||||||| |||| |||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct: 4534713 ccaattgctcttgtcaagtttaaacttccatttattcgtcccatatgaatgaaaccccct 4534654
Query: 960 gctttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattg 1019
||||| | ||| || |||||||||||| |||||||||| |||||||| || || ||||||
Sbjct: 4534653 gcttttactattctgtctctctcagcttcaagctctggcttgtggtctcttgacaaattg 4534594
Query: 1020 tatgcct 1026
|||||||
Sbjct: 4534593 tatgcct 4534587
Score = 117 bits (59), Expect = 2e-023
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 1305 ctgaagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttg 1364
||||||||||||||||| ||||||| ||||| |||||||| |||||||||||| ||| ||
Sbjct: 4534028 ctgaagaaagctctatgaacagcagtgcctaagtcaccagctgaataggcttcacttctg 4533969
Query: 1365 aggacttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|| |||||| || | |||||||||||||||||||||||| |||||||||
Sbjct: 4533968 agaacttgagagtgtaaatattttgcacagaatttggcaaccactcttcct 4533918
Score = 115 bits (58), Expect = 8e-023
Identities = 100/114 (87%)
Strand = Plus / Minus
Query: 603 tttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgat 662
||||||||||||||||| | ||||||||||||||| || || |||||| | || ||||||
Sbjct: 4535479 tttttgaactgcaccagaaccatggtcatgttgtcacatccctctccaccaattgttgat 4535420
Query: 663 ggagccaggcatctgtccagcactctctcgcacacggcagacaggctgctctcc 716
||||| ||||||||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 4535419 ggagctaggcatctgtcgagcactctttcgcacactgcagaaagactgctctcc 4535366
Score = 111 bits (56), Expect = 1e-021
Identities = 104/120 (86%)
Strand = Plus / Minus
Query: 1033 cccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttctta 1092
|||| ||||||||||| |||||||||||||| || ||||||||||||||| | |||||||
Sbjct: 4534491 ccctagaaataacacaacgggaatcaccagcgttcgccacaacaagttggttatttctta 4534432
Query: 1093 ttaatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtgaggtccct 1152
||| |||||||| ||||| | || ||||||||||||||||| || ||||| |||||||
Sbjct: 4534431 ttagcgctacacatgctgtgcatccgcatgttggcccagcaaaatcggagtggggtccct 4534372
Score = 83.8 bits (42), Expect = 3e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 722 tatacgctcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
|||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4535255 tatatgctcgtggatgaaatccaccagctgttggcttgacatgcagtccc 4535206
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 825 acgttgatatcaggattggccgtcacaatttgcttctcgggaggcaggaatttgttctgt 884
|||||||| |||||||| || ||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 4534866 acgttgatgtcaggatttgcagtcacgatttgcttctcaggaggcaagaatttgttctgt 4534807
Query: 885 ttcaattcca 894
|| |||||||
Sbjct: 4534806 ttaaattcca 4534797
Score = 73.8 bits (37), Expect = 3e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
|||||||| |||||||||||||||||||| | |||||| | ||||||| ||||||||||
Sbjct: 4533795 cctccatggccatcaaaaacaccaaagaacgatgtctcattgtcaagatttagcaatgct 4533736
Query: 1473 gaatg 1477
|||||
Sbjct: 4533735 gaatg 4533731
Score = 67.9 bits (34), Expect = 2e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
||||||||||||| |||| ||||||||||||||||| |||||||| | ||||| ||||
Sbjct: 4533277 agcatcttccatgtttgcacgccatccttgcatagacgaaagaccaagtttaagcttatc 4533218
Query: 1538 attttc 1543
||||||
Sbjct: 4533217 attttc 4533212
Score = 46.1 bits (23), Expect = 0.059
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatg 1443
|||||||| |||||| |||||||||||||||
Sbjct: 23537941 cctccatggccatcataaacaccaaagaatg 23537971
Score = 46.1 bits (23), Expect = 0.059
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatg 1443
|||||||| |||||| |||||||||||||||
Sbjct: 23210896 cctccatggccatcataaacaccaaagaatg 23210866
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 167 bits (84), Expect = 2e-038
Identities = 132/148 (89%)
Strand = Plus / Minus
Query: 1163 ccaatcatcttgttgattatttgaatcactgccccttggagaccaaatcaatccttctat 1222
||||||||||||| |||||| ||||||||||| || |||||||||||||| ||||| ||
Sbjct: 4452748 ccaatcatcttgtccattattcgaatcactgcctctcggagaccaaatcaacccttcaat 4452689
Query: 1223 cataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaacctctctg 1282
|||||||| || ||||||||| || |||||||||||||||||||||| ||| ||||||||
Sbjct: 4452688 cataccaccaatcttgtttatcttatctccaagtgcagatagttctctccagcctctctg 4452629
Query: 1283 tccttgcatcatttcatccattctgaag 1310
|||| |||||||||| ||||| ||||||
Sbjct: 4452628 tcctcgcatcatttcgtccatcctgaag 4452601
Score = 141 bits (71), Expect = 1e-030
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 900 ccaattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccct 959
|||||||| |||| |||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct: 4453179 ccaattgctcttgtcaagtttaaacttccatttattcgtcccatatgaatgaaaccccct 4453120
Query: 960 gctttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattg 1019
||||| | ||| || |||||||||||| |||||||||| |||||||| || || ||||||
Sbjct: 4453119 gcttttactattctgtctctctcagcttcaagctctggcttgtggtctcttgacaaattg 4453060
Query: 1020 tatgcct 1026
|||||||
Sbjct: 4453059 tatgcct 4453053
Score = 117 bits (59), Expect = 2e-023
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 1305 ctgaagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttg 1364
||||||||||||||||| ||||||| ||||| |||||||| |||||||||||| ||| ||
Sbjct: 4452494 ctgaagaaagctctatgaacagcagtgcctaagtcaccagctgaataggcttcacttctg 4452435
Query: 1365 aggacttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|| |||||| || | |||||||||||||||||||||||| |||||||||
Sbjct: 4452434 agaacttgagagtgtaaatattttgcacagaatttggcaaccactcttcct 4452384
Score = 115 bits (58), Expect = 8e-023
Identities = 100/114 (87%)
Strand = Plus / Minus
Query: 603 tttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgat 662
||||||||||||||||| | ||||||||||||||| || || |||||| | || ||||||
Sbjct: 4453945 tttttgaactgcaccagaaccatggtcatgttgtcacatccctctccaccaattgttgat 4453886
Query: 663 ggagccaggcatctgtccagcactctctcgcacacggcagacaggctgctctcc 716
||||| ||||||||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 4453885 ggagctaggcatctgtcgagcactctttcgcacactgcagaaagactgctctcc 4453832
Score = 111 bits (56), Expect = 1e-021
Identities = 104/120 (86%)
Strand = Plus / Minus
Query: 1033 cccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttctta 1092
|||| ||||||||||| |||||||||||||| || ||||||||||||||| | |||||||
Sbjct: 4452957 ccctagaaataacacaacgggaatcaccagcgttcgccacaacaagttggttatttctta 4452898
Query: 1093 ttaatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtgaggtccct 1152
||| |||||||| ||||| | || ||||||||||||||||| || ||||| |||||||
Sbjct: 4452897 ttagcgctacacatgctgtgcatccgcatgttggcccagcaaaatcggagtggggtccct 4452838
Score = 83.8 bits (42), Expect = 3e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 722 tatacgctcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
|||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4453721 tatatgctcgtggatgaaatccaccagctgttggcttgacatgcagtccc 4453672
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 825 acgttgatatcaggattggccgtcacaatttgcttctcgggaggcaggaatttgttctgt 884
|||||||| |||||||| || ||||| ||||||||||| ||||||| |||||||||||||
Sbjct: 4453332 acgttgatgtcaggatttgcagtcacgatttgcttctcaggaggcaagaatttgttctgt 4453273
Query: 885 ttcaattcca 894
|| |||||||
Sbjct: 4453272 ttaaattcca 4453263
Score = 73.8 bits (37), Expect = 3e-010
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
|||||||| |||||||||||||||||||| | |||||| | ||||||| ||||||||||
Sbjct: 4452261 cctccatggccatcaaaaacaccaaagaacgatgtctcattgtcaagatttagcaatgct 4452202
Query: 1473 gaatg 1477
|||||
Sbjct: 4452201 gaatg 4452197
Score = 67.9 bits (34), Expect = 2e-008
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
||||||||||||| |||| ||||||||||||||||| |||||||| | ||||| ||||
Sbjct: 4451743 agcatcttccatgtttgcacgccatccttgcatagacgaaagaccaagtttaagcttatc 4451684
Query: 1538 attttc 1543
||||||
Sbjct: 4451683 attttc 4451678
Score = 46.1 bits (23), Expect = 0.059
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatg 1443
|||||||| |||||| |||||||||||||||
Sbjct: 23799042 cctccatggccatcataaacaccaaagaatg 23799072
Score = 46.1 bits (23), Expect = 0.059
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatg 1443
|||||||| |||||| |||||||||||||||
Sbjct: 23458659 cctccatggccatcataaacaccaaagaatg 23458629
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 1159 aagcccaatcatcttgttgattatttgaatcactgccccttggagaccaaatcaatcctt 1218
||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 3748956 aagcccaatcatcgtgttgatcatttgaatcactgcctcttggagaccagatcaagcctt 3749015
Query: 1219 ctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaacctc 1278
||||||| ||||||| || |||||| || ||||||||||| |||||||||||| ||||
Sbjct: 3749016 ctatcatgccactaatctggtttatcttatctccaagtgcttgtagttctcgccagcctc 3749075
Query: 1279 tctgtccttgcatcatttcatccattctgaa 1309
| || ||| ||||||| ||||||||||||||
Sbjct: 3749076 tttgacctcgcatcatctcatccattctgaa 3749106
Score = 141 bits (71), Expect = 1e-030
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 900 ccaattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccct 959
|||||||||||||||||||||| | ||||||||||||||||||| || ||| | || |||
Sbjct: 3748218 ccaattgcccttgacaagtttatagttccatttactcgtcccatctgtatgtaccctcct 3748277
Query: 960 gctttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattg 1019
||||| | ||| ||||||||||| ||| ||||||||||||||||||| || |||||||||
Sbjct: 3748278 gcttttagtattctttctctctctgcttcaagctctggtttgtggtctcttgataaattg 3748337
Query: 1020 tatgcct 1026
|||||||
Sbjct: 3748338 tatgcct 3748344
Score = 133 bits (67), Expect = 3e-028
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 1034 ccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttcttat 1093
|||||| |||||||| |||||||||||||||||||| |||||||||||| | |||||||
Sbjct: 3748441 ccttgagataacacagcgggaatcaccagcatttgcgacaacaagttggctatttcttac 3748500
Query: 1094 taatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtg 1144
|| ||| ||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 3748501 tattgcaacacaagctgtgctcccacaggttggcccagcaaagtcagagtg 3748551
Score = 109 bits (55), Expect = 5e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||| |||||||| |||||||||||||| || |||||| | | |||||||||
Sbjct: 3747519 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 3747578
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctcc 716
||||||||||| || |||||||| ||||| || ||||| ||||||||||||
Sbjct: 3747579 gccaggcatctatctagcactctttcgcataccgcagaaaggctgctctcc 3747629
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
|||||| ||||| ||||| |||||||||||||||||||| || || || ||||| ||||
Sbjct: 3750267 agcatcctccatagttgcacgccatccttgcatagatgagagtccaaatttaagcttatc 3750326
Query: 1538 attttctccattttcagatagcttgtcagtttt 1570
|||||| |||| |||||||||||| || |||||
Sbjct: 3750327 attttcgccatcttcagatagcttctcggtttt 3750359
Score = 71.9 bits (36), Expect = 1e-009
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 1308 aagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttgagg 1367
||||||||| ||||| | ||| ||| |||||||| | ||||||||| || ||| ||||
Sbjct: 3749197 aagaaagctttatgggctgcattgcccaggtcacctgctgaataggcctcacttctgaga 3749256
Query: 1368 acttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|||| | ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 3749257 acttctctgtgcagatattttgcacagaatttagcaaccactcttcct 3749304
Score = 61.9 bits (31), Expect = 1e-006
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 729 tcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
|||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 3747730 tcgtggatgaaatcaaccagctgttggctagacatgcagtccc 3747772
Score = 60.0 bits (30), Expect = 4e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 774 atgccatcacatgctacaacaacaaagtcgtcatcatcgcagagctccac 823
|||||||||||||||| ||||| |||||| |||||||| || ||||||||
Sbjct: 3747918 atgccatcacatgctaaaacaagaaagtcatcatcatcacaaagctccac 3747967
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
|||||||| ||||| |||||||||||||||| ||| || |||| | ||||||||| |||
Sbjct: 3749395 cctccatgtccatcgaaaacaccaaagaatgatgtgtcattatcgatatctagcaaagct 3749454
Query: 1473 gaatg 1477
|||||
Sbjct: 3749455 gaatg 3749459
>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0453H04
Length = 175047
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 1159 aagcccaatcatcttgttgattatttgaatcactgccccttggagaccaaatcaatcctt 1218
||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 148011 aagcccaatcatcgtgttgatcatttgaatcactgcctcttggagaccagatcaagcctt 148070
Query: 1219 ctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaacctc 1278
||||||| ||||||| || |||||| || ||||||||||| |||||||||||| ||||
Sbjct: 148071 ctatcatgccactaatctggtttatcttatctccaagtgcttgtagttctcgccagcctc 148130
Query: 1279 tctgtccttgcatcatttcatccattctgaa 1309
| || ||| ||||||| ||||||||||||||
Sbjct: 148131 tttgacctcgcatcatctcatccattctgaa 148161
Score = 141 bits (71), Expect = 1e-030
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 900 ccaattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccct 959
|||||||||||||||||||||| | ||||||||||||||||||| || ||| | || |||
Sbjct: 147273 ccaattgcccttgacaagtttatagttccatttactcgtcccatctgtatgtaccctcct 147332
Query: 960 gctttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattg 1019
||||| | ||| ||||||||||| ||| ||||||||||||||||||| || |||||||||
Sbjct: 147333 gcttttagtattctttctctctctgcttcaagctctggtttgtggtctcttgataaattg 147392
Query: 1020 tatgcct 1026
|||||||
Sbjct: 147393 tatgcct 147399
Score = 133 bits (67), Expect = 3e-028
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 1034 ccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttcttat 1093
|||||| |||||||| |||||||||||||||||||| |||||||||||| | |||||||
Sbjct: 147496 ccttgagataacacagcgggaatcaccagcatttgcgacaacaagttggctatttcttac 147555
Query: 1094 taatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtg 1144
|| ||| ||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 147556 tattgcaacacaagctgtgctcccacaggttggcccagcaaagtcagagtg 147606
Score = 109 bits (55), Expect = 5e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||| |||||||| |||||||||||||| || |||||| | | |||||||||
Sbjct: 146574 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 146633
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctcc 716
||||||||||| || |||||||| ||||| || ||||| ||||||||||||
Sbjct: 146634 gccaggcatctatctagcactctttcgcataccgcagaaaggctgctctcc 146684
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
|||||| ||||| ||||| |||||||||||||||||||| || || || ||||| ||||
Sbjct: 149322 agcatcctccatagttgcacgccatccttgcatagatgagagtccaaatttaagcttatc 149381
Query: 1538 attttctccattttcagatagcttgtcagtttt 1570
|||||| |||| |||||||||||| || |||||
Sbjct: 149382 attttcgccatcttcagatagcttctcggtttt 149414
Score = 71.9 bits (36), Expect = 1e-009
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 1308 aagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttgagg 1367
||||||||| ||||| | ||| ||| |||||||| | ||||||||| || ||| ||||
Sbjct: 148252 aagaaagctttatgggctgcattgcccaggtcacctgctgaataggcctcacttctgaga 148311
Query: 1368 acttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|||| | ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 148312 acttctctgtgcagatattttgcacagaatttagcaaccactcttcct 148359
Score = 61.9 bits (31), Expect = 1e-006
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 729 tcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
|||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 146785 tcgtggatgaaatcaaccagctgttggctagacatgcagtccc 146827
Score = 60.0 bits (30), Expect = 4e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 774 atgccatcacatgctacaacaacaaagtcgtcatcatcgcagagctccac 823
|||||||||||||||| ||||| |||||| |||||||| || ||||||||
Sbjct: 146973 atgccatcacatgctaaaacaagaaagtcatcatcatcacaaagctccac 147022
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
|||||||| ||||| |||||||||||||||| ||| || |||| | ||||||||| |||
Sbjct: 148450 cctccatgtccatcgaaaacaccaaagaatgatgtgtcattatcgatatctagcaaagct 148509
Query: 1473 gaatg 1477
|||||
Sbjct: 148510 gaatg 148514
>gb|AACV01014694.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014694, whole
genome shotgun sequence
Length = 29508
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 1159 aagcccaatcatcttgttgattatttgaatcactgccccttggagaccaaatcaatcctt 1218
||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 20863 aagcccaatcatcgtgttgatcatttgaatcactgcctcttggagaccagatcaagcctt 20922
Query: 1219 ctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaacctc 1278
||||||| ||||||| || |||||| || ||||||||||| |||||||||||| ||||
Sbjct: 20923 ctatcatgccactaatctggtttatcttatctccaagtgcttgtagttctcgccagcctc 20982
Query: 1279 tctgtccttgcatcatttcatccattctgaa 1309
| || ||| ||||||| ||||||||||||||
Sbjct: 20983 tttgacctcgcatcatctcatccattctgaa 21013
Score = 141 bits (71), Expect = 1e-030
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 900 ccaattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccct 959
|||||||||||||||||||||| | ||||||||||||||||||| || ||| | || |||
Sbjct: 20125 ccaattgcccttgacaagtttatagttccatttactcgtcccatctgtatgtaccctcct 20184
Query: 960 gctttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattg 1019
||||| | ||| ||||||||||| ||| ||||||||||||||||||| || |||||||||
Sbjct: 20185 gcttttagtattctttctctctctgcttcaagctctggtttgtggtctcttgataaattg 20244
Query: 1020 tatgcct 1026
|||||||
Sbjct: 20245 tatgcct 20251
Score = 133 bits (67), Expect = 3e-028
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 1034 ccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttcttat 1093
|||||| |||||||| |||||||||||||||||||| |||||||||||| | |||||||
Sbjct: 20348 ccttgagataacacagcgggaatcaccagcatttgcgacaacaagttggctatttcttac 20407
Query: 1094 taatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtg 1144
|| ||| ||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 20408 tattgcaacacaagctgtgctcccacaggttggcccagcaaagtcagagtg 20458
Score = 109 bits (55), Expect = 5e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||| |||||||| |||||||||||||| || |||||| | | |||||||||
Sbjct: 19426 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 19485
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctcc 716
||||||||||| || |||||||| ||||| || ||||| ||||||||||||
Sbjct: 19486 gccaggcatctatctagcactctttcgcataccgcagaaaggctgctctcc 19536
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
|||||| ||||| ||||| |||||||||||||||||||| || || || ||||| ||||
Sbjct: 22174 agcatcctccatagttgcacgccatccttgcatagatgagagtccaaatttaagcttatc 22233
Query: 1538 attttctccattttcagatagcttgtcagtttt 1570
|||||| |||| |||||||||||| || |||||
Sbjct: 22234 attttcgccatcttcagatagcttctcggtttt 22266
Score = 71.9 bits (36), Expect = 1e-009
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 1308 aagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttgagg 1367
||||||||| ||||| | ||| ||| |||||||| | ||||||||| || ||| ||||
Sbjct: 21104 aagaaagctttatgggctgcattgcccaggtcacctgctgaataggcctcacttctgaga 21163
Query: 1368 acttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|||| | ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 21164 acttctctgtgcagatattttgcacagaatttagcaaccactcttcct 21211
Score = 61.9 bits (31), Expect = 1e-006
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 729 tcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
|||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 19637 tcgtggatgaaatcaaccagctgttggctagacatgcagtccc 19679
Score = 60.0 bits (30), Expect = 4e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 774 atgccatcacatgctacaacaacaaagtcgtcatcatcgcagagctccac 823
|||||||||||||||| ||||| |||||| |||||||| || ||||||||
Sbjct: 19825 atgccatcacatgctaaaacaagaaagtcatcatcatcacaaagctccac 19874
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
|||||||| ||||| |||||||||||||||| ||| || |||| | ||||||||| |||
Sbjct: 21302 cctccatgtccatcgaaaacaccaaagaatgatgtgtcattatcgatatctagcaaagct 21361
Query: 1473 gaatg 1477
|||||
Sbjct: 21362 gaatg 21366
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 1159 aagcccaatcatcttgttgattatttgaatcactgccccttggagaccaaatcaatcctt 1218
||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 7625997 aagcccaatcatcgtgttgatcatttgaatcactgcctcttggagaccagatcaagcctt 7626056
Query: 1219 ctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaacctc 1278
||||||| ||||||| || |||||| || ||||||||||| |||||||||||| ||||
Sbjct: 7626057 ctatcatgccactaatctggtttatcttatctccaagtgcttgtagttctcgccagcctc 7626116
Query: 1279 tctgtccttgcatcatttcatccattctgaa 1309
| || ||| ||||||| ||||||||||||||
Sbjct: 7626117 tttgacctcgcatcatctcatccattctgaa 7626147
Score = 141 bits (71), Expect = 1e-030
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 900 ccaattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccct 959
|||||||||||||||||||||| | ||||||||||||||||||| || ||| | || |||
Sbjct: 7625259 ccaattgcccttgacaagtttatagttccatttactcgtcccatctgtatgtaccctcct 7625318
Query: 960 gctttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattg 1019
||||| | ||| ||||||||||| ||| ||||||||||||||||||| || |||||||||
Sbjct: 7625319 gcttttagtattctttctctctctgcttcaagctctggtttgtggtctcttgataaattg 7625378
Query: 1020 tatgcct 1026
|||||||
Sbjct: 7625379 tatgcct 7625385
Score = 133 bits (67), Expect = 3e-028
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 1034 ccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttcttat 1093
|||||| |||||||| |||||||||||||||||||| |||||||||||| | |||||||
Sbjct: 7625482 ccttgagataacacagcgggaatcaccagcatttgcgacaacaagttggctatttcttac 7625541
Query: 1094 taatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtg 1144
|| ||| ||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 7625542 tattgcaacacaagctgtgctcccacaggttggcccagcaaagtcagagtg 7625592
Score = 109 bits (55), Expect = 5e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||| |||||||| |||||||||||||| || |||||| | | |||||||||
Sbjct: 7624560 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 7624619
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctcc 716
||||||||||| || |||||||| ||||| || ||||| ||||||||||||
Sbjct: 7624620 gccaggcatctatctagcactctttcgcataccgcagaaaggctgctctcc 7624670
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
|||||| ||||| ||||| |||||||||||||||||||| || || || ||||| ||||
Sbjct: 7627308 agcatcctccatagttgcacgccatccttgcatagatgagagtccaaatttaagcttatc 7627367
Query: 1538 attttctccattttcagatagcttgtcagtttt 1570
|||||| |||| |||||||||||| || |||||
Sbjct: 7627368 attttcgccatcttcagatagcttctcggtttt 7627400
Score = 71.9 bits (36), Expect = 1e-009
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 1308 aagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttgagg 1367
||||||||| ||||| | ||| ||| |||||||| | ||||||||| || ||| ||||
Sbjct: 7626238 aagaaagctttatgggctgcattgcccaggtcacctgctgaataggcctcacttctgaga 7626297
Query: 1368 acttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|||| | ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 7626298 acttctctgtgcagatattttgcacagaatttagcaaccactcttcct 7626345
Score = 61.9 bits (31), Expect = 1e-006
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 729 tcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
|||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 7624771 tcgtggatgaaatcaaccagctgttggctagacatgcagtccc 7624813
Score = 60.0 bits (30), Expect = 4e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 774 atgccatcacatgctacaacaacaaagtcgtcatcatcgcagagctccac 823
|||||||||||||||| ||||| |||||| |||||||| || ||||||||
Sbjct: 7624959 atgccatcacatgctaaaacaagaaagtcatcatcatcacaaagctccac 7625008
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
|||||||| ||||| |||||||||||||||| ||| || |||| | ||||||||| |||
Sbjct: 7626436 cctccatgtccatcgaaaacaccaaagaatgatgtgtcattatcgatatctagcaaagct 7626495
Query: 1473 gaatg 1477
|||||
Sbjct: 7626496 gaatg 7626500
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 1159 aagcccaatcatcttgttgattatttgaatcactgccccttggagaccaaatcaatcctt 1218
||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 25324734 aagcccaatcatcgtgttgatcatttgaatcactgcctcttggagaccagatcaagcctt 25324793
Query: 1219 ctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaacctc 1278
||||||| ||||||| || |||||| || ||||||||||| |||||||||||| ||||
Sbjct: 25324794 ctatcatgccactaatctggtttatcttatctccaagtgcttgtagttctcgccagcctc 25324853
Query: 1279 tctgtccttgcatcatttcatccattctgaa 1309
| || ||| ||||||| ||||||||||||||
Sbjct: 25324854 tttgacctcgcatcatctcatccattctgaa 25324884
Score = 141 bits (71), Expect = 1e-030
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 900 ccaattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccct 959
|||||||||||||||||||||| | ||||||||||||||||||| || ||| | || |||
Sbjct: 25323996 ccaattgcccttgacaagtttatagttccatttactcgtcccatctgtatgtaccctcct 25324055
Query: 960 gctttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattg 1019
||||| | ||| ||||||||||| ||| ||||||||||||||||||| || |||||||||
Sbjct: 25324056 gcttttagtattctttctctctctgcttcaagctctggtttgtggtctcttgataaattg 25324115
Query: 1020 tatgcct 1026
|||||||
Sbjct: 25324116 tatgcct 25324122
Score = 133 bits (67), Expect = 3e-028
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 1034 ccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttcttat 1093
|||||| |||||||| |||||||||||||||||||| |||||||||||| | |||||||
Sbjct: 25324219 ccttgagataacacagcgggaatcaccagcatttgcgacaacaagttggctatttcttac 25324278
Query: 1094 taatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtg 1144
|| ||| ||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 25324279 tattgcaacacaagctgtgctcccacaggttggcccagcaaagtcagagtg 25324329
Score = 109 bits (55), Expect = 5e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||| |||||||| |||||||||||||| || |||||| | | |||||||||
Sbjct: 25323297 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 25323356
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctcc 716
||||||||||| || |||||||| ||||| || ||||| ||||||||||||
Sbjct: 25323357 gccaggcatctatctagcactctttcgcataccgcagaaaggctgctctcc 25323407
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
|||||| ||||| ||||| |||||||||||||||||||| || || || ||||| ||||
Sbjct: 25326045 agcatcctccatagttgcacgccatccttgcatagatgagagtccaaatttaagcttatc 25326104
Query: 1538 attttctccattttcagatagcttgtcagtttt 1570
|||||| |||| |||||||||||| || |||||
Sbjct: 25326105 attttcgccatcttcagatagcttctcggtttt 25326137
Score = 71.9 bits (36), Expect = 1e-009
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 1308 aagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttgagg 1367
||||||||| ||||| | ||| ||| |||||||| | ||||||||| || ||| ||||
Sbjct: 25324975 aagaaagctttatgggctgcattgcccaggtcacctgctgaataggcctcacttctgaga 25325034
Query: 1368 acttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|||| | ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 25325035 acttctctgtgcagatattttgcacagaatttagcaaccactcttcct 25325082
Score = 61.9 bits (31), Expect = 1e-006
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 729 tcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
|||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 25323508 tcgtggatgaaatcaaccagctgttggctagacatgcagtccc 25323550
Score = 60.0 bits (30), Expect = 4e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 774 atgccatcacatgctacaacaacaaagtcgtcatcatcgcagagctccac 823
|||||||||||||||| ||||| |||||| |||||||| || ||||||||
Sbjct: 25323696 atgccatcacatgctaaaacaagaaagtcatcatcatcacaaagctccac 25323745
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
|||||||| ||||| |||||||||||||||| ||| || |||| | ||||||||| |||
Sbjct: 25325173 cctccatgtccatcgaaaacaccaaagaatgatgtgtcattatcgatatctagcaaagct 25325232
Query: 1473 gaatg 1477
|||||
Sbjct: 25325233 gaatg 25325237
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 157 bits (79), Expect = 2e-035
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 1159 aagcccaatcatcttgttgattatttgaatcactgccccttggagaccaaatcaatcctt 1218
||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 26283471 aagcccaatcatcgtgttgatcatttgaatcactgcctcttggagaccagatcaagcctt 26283530
Query: 1219 ctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaacctc 1278
||||||| ||||||| || |||||| || ||||||||||| |||||||||||| ||||
Sbjct: 26283531 ctatcatgccactaatctggtttatcttatctccaagtgcttgtagttctcgccagcctc 26283590
Query: 1279 tctgtccttgcatcatttcatccattctgaa 1309
| || ||| ||||||| ||||||||||||||
Sbjct: 26283591 tttgacctcgcatcatctcatccattctgaa 26283621
Score = 141 bits (71), Expect = 1e-030
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 900 ccaattgcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccct 959
|||||||||||||||||||||| | ||||||||||||||||||| || ||| | || |||
Sbjct: 26282733 ccaattgcccttgacaagtttatagttccatttactcgtcccatctgtatgtaccctcct 26282792
Query: 960 gctttcattatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattg 1019
||||| | ||| ||||||||||| ||| ||||||||||||||||||| || |||||||||
Sbjct: 26282793 gcttttagtattctttctctctctgcttcaagctctggtttgtggtctcttgataaattg 26282852
Query: 1020 tatgcct 1026
|||||||
Sbjct: 26282853 tatgcct 26282859
Score = 133 bits (67), Expect = 3e-028
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 1034 ccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtgtttcttat 1093
|||||| |||||||| |||||||||||||||||||| |||||||||||| | |||||||
Sbjct: 26282956 ccttgagataacacagcgggaatcaccagcatttgcgacaacaagttggctatttcttac 26283015
Query: 1094 taatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtg 1144
|| ||| ||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 26283016 tattgcaacacaagctgtgctcccacaggttggcccagcaaagtcagagtg 26283066
Score = 109 bits (55), Expect = 5e-021
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||| |||||||| |||||||||||||| || |||||| | | |||||||||
Sbjct: 26282034 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 26282093
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctcc 716
||||||||||| || |||||||| ||||| || ||||| ||||||||||||
Sbjct: 26282094 gccaggcatctatctagcactctttcgcataccgcagaaaggctgctctcc 26282144
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
|||||| ||||| ||||| |||||||||||||||||||| || || || ||||| ||||
Sbjct: 26284782 agcatcctccatagttgcacgccatccttgcatagatgagagtccaaatttaagcttatc 26284841
Query: 1538 attttctccattttcagatagcttgtcagtttt 1570
|||||| |||| |||||||||||| || |||||
Sbjct: 26284842 attttcgccatcttcagatagcttctcggtttt 26284874
Score = 71.9 bits (36), Expect = 1e-009
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 1308 aagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttgagg 1367
||||||||| ||||| | ||| ||| |||||||| | ||||||||| || ||| ||||
Sbjct: 26283712 aagaaagctttatgggctgcattgcccaggtcacctgctgaataggcctcacttctgaga 26283771
Query: 1368 acttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|||| | ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 26283772 acttctctgtgcagatattttgcacagaatttagcaaccactcttcct 26283819
Score = 61.9 bits (31), Expect = 1e-006
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 729 tcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
|||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 26282245 tcgtggatgaaatcaaccagctgttggctagacatgcagtccc 26282287
Score = 60.0 bits (30), Expect = 4e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 774 atgccatcacatgctacaacaacaaagtcgtcatcatcgcagagctccac 823
|||||||||||||||| ||||| |||||| |||||||| || ||||||||
Sbjct: 26282433 atgccatcacatgctaaaacaagaaagtcatcatcatcacaaagctccac 26282482
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
|||||||| ||||| |||||||||||||||| ||| || |||| | ||||||||| |||
Sbjct: 26283910 cctccatgtccatcgaaaacaccaaagaatgatgtgtcattatcgatatctagcaaagct 26283969
Query: 1473 gaatg 1477
|||||
Sbjct: 26283970 gaatg 26283974
>gb|CB637993.1|CB637993 OSJNEa05K20.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa05K20 3', mRNA sequence
Length = 580
Score = 155 bits (78), Expect = 9e-035
Identities = 143/165 (86%)
Strand = Plus / Plus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||| |||||||| |||||||||||||| || |||||| | | |||||||||
Sbjct: 416 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 475
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtgtttata 725
||||||||||| || |||||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct: 476 gccaggcatctatctagcactctttcgcataccgcagaaaggctgctctctgtgtttatg 535
Query: 726 cgctcgtggataaaatccaccagctgttggcttgacatgcagtcc 770
| ||| |||| ||||| |||||||||||||| ||||||||||||
Sbjct: 536 tgttcgnggatgaaatcaaccagctgttggctagacatgcagtcc 580
>dbj|AG210170.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF1015_0_102_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF1015, genomic survey sequence
Length = 454
Score = 115 bits (58), Expect = 8e-023
Identities = 100/114 (87%)
Strand = Plus / Plus
Query: 603 tttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgat 662
||||||||||||||||| | ||||||||||||||| || || |||||| | || ||||||
Sbjct: 172 tttttgaactgcaccagaaccatggtcatgttgtcacatccctctccaccaattgttgat 231
Query: 663 ggagccaggcatctgtccagcactctctcgcacacggcagacaggctgctctcc 716
||||| ||||||||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 232 ggagctaggcatctgtcgagcactctttcgcacactgcagaaagactgctctcc 285
Score = 83.8 bits (42), Expect = 3e-013
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 722 tatacgctcgtggataaaatccaccagctgttggcttgacatgcagtccc 771
|||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 396 tatatgctcgtggatgaaatccaccagctgttggcttgacatgcagtccc 445
>dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09682T, 3'
flanking sequence of Tos17 insertion in rice strain
ND4557, genomic survey sequence
Length = 353
Score = 52.0 bits (26), Expect = 0.001
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1573 gagtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||||
Sbjct: 143 gagtacctgcccgggcggccgctcga 168
>dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25930T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9028, genomic survey sequence
Length = 385
Score = 52.0 bits (26), Expect = 0.001
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1573 gagtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||||
Sbjct: 313 gagtacctgcccgggcggccgctcga 338
>dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA, clone:T28954T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1070, genomic survey sequence
Length = 459
Score = 52.0 bits (26), Expect = 0.001
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1572 ggagtacctgcccgggcggccgctcg 1597
||||||||||||||||||||||||||
Sbjct: 422 ggagtacctgcccgggcggccgctcg 447
>gb|AU057604.1|AU057604 AU057604 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21610_1A, mRNA sequence
Length = 574
Score = 52.0 bits (26), Expect = 0.001
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 756 cttgacatgcagtcccaaatgccatcacatgcta 789
||||||||||| ||||| ||||||||||||||||
Sbjct: 324 cttgacatgcaatcccatatgccatcacatgcta 291
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 879 ttctgtttcaattccacgtctccaattgcccttgacaagtttaaacttccatt 931
||||| |||||||||| || || |||||||||| |||||| |||||||||||
Sbjct: 201 ttctgcttcaattccatatcccctattgcccttgccaagttcaaacttccatt 149
Score = 46.1 bits (23), Expect = 0.059
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1044 acacatcgggaatcaccagcatttgccacaa 1074
||||| |||||||||||||||||||| ||||
Sbjct: 36 acacaccgggaatcaccagcatttgcaacaa 6
>gb|CB663376.1|CB663376 OSJNEd08D24.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08D24 3', mRNA sequence
Length = 797
Score = 52.0 bits (26), Expect = 0.001
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 756 cttgacatgcagtcccaaatgccatcacatgcta 789
||||||||||| ||||| ||||||||||||||||
Sbjct: 457 cttgacatgcaatcccatatgccatcacatgcta 490
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 879 ttctgtttcaattccacgtctccaattgcccttgacaagtttaaacttccatt 931
||||| |||||||||| || || |||||||||| |||||| |||||||||||
Sbjct: 580 ttctgcttcaattccatatcccctattgcccttgccaagttcaaacttccatt 632
Score = 46.1 bits (23), Expect = 0.059
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1044 acacatcgggaatcaccagcatttgccacaa 1074
||||| |||||||||||||||||||| ||||
Sbjct: 745 acacaccgggaatcaccagcatttgcaacaa 775
>gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of JA/BTH-treated rice leaf Oryza
sativa (japonica cultivar-group) cDNA clone JBI35, mRNA
sequence
Length = 350
Score = 52.0 bits (26), Expect = 0.001
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1574 agtacctgcccgggcggccgctcgaa 1599
||||||||||||||||||||||||||
Sbjct: 26 agtacctgcccgggcggccgctcgaa 1
>dbj|AK111778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081L07, full
insert sequence
Length = 1572
Score = 52.0 bits (26), Expect = 0.001
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 756 cttgacatgcagtcccaaatgccatcacatgcta 789
||||||||||| ||||| ||||||||||||||||
Sbjct: 1084 cttgacatgcaatcccatatgccatcacatgcta 1051
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 879 ttctgtttcaattccacgtctccaattgcccttgacaagtttaaacttccatt 931
||||| |||||||||| || || |||||||||| |||||| |||||||||||
Sbjct: 961 ttctgcttcaattccatatcccctattgcccttgccaagttcaaacttccatt 909
Score = 46.1 bits (23), Expect = 0.059
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1044 acacatcgggaatcaccagcatttgccacaa 1074
||||| |||||||||||||||||||| ||||
Sbjct: 796 acacaccgggaatcaccagcatttgcaacaa 766
>dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00161T, 3'
flanking sequence of Tos17 insertion in rice strain
H0592, genomic survey sequence
Length = 309
Score = 50.1 bits (25), Expect = 0.004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctcga 1598
|||||||||||||||||||||||||
Sbjct: 278 agtacctgcccgggcggccgctcga 302
>dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10610T, 3'
flanking sequence of Tos17 insertion in rice strain
ND6065, genomic survey sequence
Length = 329
Score = 50.1 bits (25), Expect = 0.004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctcga 1598
|||||||||||||||||||||||||
Sbjct: 268 agtacctgcccgggcggccgctcga 292
>dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11702T, 3'
flanking sequence of Tos17 insertion in rice strain
ND8064, genomic survey sequence
Length = 339
Score = 50.1 bits (25), Expect = 0.004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctcga 1598
|||||||||||||||||||||||||
Sbjct: 245 agtacctgcccgggcggccgctcga 269
>dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11953T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9058, genomic survey sequence
Length = 210
Score = 50.1 bits (25), Expect = 0.004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctcga 1598
|||||||||||||||||||||||||
Sbjct: 146 agtacctgcccgggcggccgctcga 170
>dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00181T, 3'
flanking sequence of Tos17 insertion in rice strain
H0615, genomic survey sequence
Length = 447
Score = 50.1 bits (25), Expect = 0.004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctcga 1598
|||||||||||||||||||||||||
Sbjct: 419 agtacctgcccgggcggccgctcga 443
>dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28812T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1017, genomic survey sequence
Length = 253
Score = 50.1 bits (25), Expect = 0.004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctcga 1598
|||||||||||||||||||||||||
Sbjct: 200 agtacctgcccgggcggccgctcga 224
>dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00101T, 3'
flanking sequence of Tos17 insertion in rice strain
H0388, genomic survey sequence
Length = 222
Score = 48.1 bits (24), Expect = 0.015
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1573 gagtacctgcccgggcggccgctc 1596
||||||||||||||||||||||||
Sbjct: 193 gagtacctgcccgggcggccgctc 216
>dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25630T, 3'
flanking sequence of Tos17 insertion in rice strain
NF8002, genomic survey sequence
Length = 485
Score = 48.1 bits (24), Expect = 0.015
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 207 gtacctgcccgggcggccgctcga 230
>gb|BU099222.1|BU099222 S234-XB10 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA clone S234-XB10 5' similar
to putative protein phosphatase 2C, mRNA sequence
Length = 350
Score = 48.1 bits (24), Expect = 0.015
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1412 tcctccatgaccatcaaaaacaccaaagaatg 1443
||||||||| |||||| |||||||||||||||
Sbjct: 42 tcctccatggccatcataaacaccaaagaatg 11
>gb|CA998003.1|CA998003 S234X_B10 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 674
Score = 48.1 bits (24), Expect = 0.015
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1412 tcctccatgaccatcaaaaacaccaaagaatg 1443
||||||||| |||||| |||||||||||||||
Sbjct: 33 tcctccatggccatcataaacaccaaagaatg 2
>gb|CB644275.1|CB644275 OSJNEb05G14.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb05G14 5', mRNA sequence
Length = 810
Score = 48.1 bits (24), Expect = 0.015
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1412 tcctccatgaccatcaaaaacaccaaagaatg 1443
||||||||| |||||| |||||||||||||||
Sbjct: 99 tcctccatggccatcataaacaccaaagaatg 68
>dbj|AK065211.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F23, full
insert sequence
Length = 3196
Score = 48.1 bits (24), Expect = 0.015
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1412 tcctccatgaccatcaaaaacaccaaagaatg 1443
||||||||| |||||| |||||||||||||||
Sbjct: 1358 tcctccatggccatcataaacaccaaagaatg 1327
>dbj|AK072375.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065M01, full
insert sequence
Length = 3667
Score = 48.1 bits (24), Expect = 0.015
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1412 tcctccatgaccatcaaaaacaccaaagaatg 1443
||||||||| |||||| |||||||||||||||
Sbjct: 2545 tcctccatggccatcataaacaccaaagaatg 2514
>dbj|AK100561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104F18, full
insert sequence
Length = 3021
Score = 48.1 bits (24), Expect = 0.015
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1412 tcctccatgaccatcaaaaacaccaaagaatg 1443
||||||||| |||||| |||||||||||||||
Sbjct: 1232 tcctccatggccatcataaacaccaaagaatg 1201
>gb|AQ841027.1|AQ841027 nbxb0081M13r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0081M13r, DNA sequence
Length = 864
Score = 46.1 bits (23), Expect = 0.059
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatg 1443
|||||||| |||||| |||||||||||||||
Sbjct: 442 cctccatggccatcataaacaccaaagaatg 472
>dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA, clone:T16966T, 3'
flanking sequence of Tos17 insertion in rice strain
NE8022, genomic survey sequence
Length = 327
Score = 46.1 bits (23), Expect = 0.059
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1576 tacctgcccgggcggccgctcga 1598
|||||||||||||||||||||||
Sbjct: 291 tacctgcccgggcggccgctcga 313
>dbj|AG210663.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF2011_0_502_1A, 3'
flanking sequence of Tos17 insertion in rice strain
NF2011, genomic survey sequence
Length = 317
Score = 46.1 bits (23), Expect = 0.059
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatg 1443
|||||||| |||||| |||||||||||||||
Sbjct: 231 cctccatggccatcataaacaccaaagaatg 201
>dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00072T, 3'
flanking sequence of Tos17 insertion in rice strain
H0268, genomic survey sequence
Length = 147
Score = 46.1 bits (23), Expect = 0.059
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1576 tacctgcccgggcggccgctcga 1598
|||||||||||||||||||||||
Sbjct: 116 tacctgcccgggcggccgctcga 138
>dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00091T, 3'
flanking sequence of Tos17 insertion in rice strain
H0363, genomic survey sequence
Length = 383
Score = 46.1 bits (23), Expect = 0.059
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1576 tacctgcccgggcggccgctcga 1598
|||||||||||||||||||||||
Sbjct: 361 tacctgcccgggcggccgctcga 383
>dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00128T, 3'
flanking sequence of Tos17 insertion in rice strain
H0450, genomic survey sequence
Length = 222
Score = 46.1 bits (23), Expect = 0.059
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctc 1596
|||||||||||||||||||||||
Sbjct: 200 agtacctgcccgggcggccgctc 222
>dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00163T, 3'
flanking sequence of Tos17 insertion in rice strain
H0596, genomic survey sequence
Length = 368
Score = 46.1 bits (23), Expect = 0.059
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1576 tacctgcccgggcggccgctcga 1598
|||||||||||||||||||||||
Sbjct: 339 tacctgcccgggcggccgctcga 361
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,217,893
Number of Sequences: 438736
Number of extensions: 2217893
Number of successful extensions: 11265
Number of sequences better than 0.5: 145
Number of HSP's better than 0.5 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10494
Number of HSP's gapped (non-prelim): 761
length of query: 1599
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1577
effective length of database: 2,790,767,724
effective search space: 4401040700748
effective search space used: 4401040700748
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)