BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647492.2.1
(1179 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_192821.1| Oryza sativa (japonica cultivar-group), p... 626 e-177
dbj|AK058453.1| Oryza sativa (japonica cultivar-group) cDNA... 618 e-174
dbj|AK099329.1| Oryza sativa (japonica cultivar-group) cDNA... 569 e-159
gb|AACV01001842.1| Oryza sativa (japonica cultivar-group) c... 416 e-113
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 416 e-113
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 416 e-113
dbj|AP003328.3| Oryza sativa (japonica cultivar-group) geno... 416 e-113
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 416 e-113
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 416 e-113
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 416 e-113
ref|XM_475982.1| Oryza sativa (japonica cultivar-group), p... 194 8e-047
gb|CF308660.1|CF308660 ABF--02-J02.b1 ABF3-overexpressing t... 137 2e-029
dbj|AK059595.1| Oryza sativa (japonica cultivar-group) cDNA... 121 9e-025
dbj|AK061146.1| Oryza sativa (japonica cultivar-group) cDNA... 121 9e-025
dbj|AK106194.1| Oryza sativa (japonica cultivar-group) cDNA... 121 9e-025
gb|AACV01001841.1| Oryza sativa (japonica cultivar-group) c... 109 3e-021
gb|AU172834.1|AU172834 AU172834 Rice panicle shorter than 3... 96 5e-017
gb|AC098598.2| Oryza sativa (japonica cultivar-group) chrom... 88 1e-014
gb|AACV01000128.1| Oryza sativa (japonica cultivar-group) c... 88 1e-014
ref|NT_107222.1| Oryza sativa (japonica cultivar-group) 88 1e-014
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 88 1e-014
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 88 1e-014
gb|CB650056.1|CB650056 OSJNEb14F01.f OSJNEb Oryza sativa (j... 84 2e-013
gb|CB647765.1|CB647765 OSJNEb10N11.r OSJNEb Oryza sativa (j... 62 7e-007
gb|CB650057.1|CB650057 OSJNEb14F01.r OSJNEb Oryza sativa (j... 62 7e-007
dbj|AP003978.1| Oryza sativa (japonica cultivar-group) chro... 62 7e-007
dbj|AP006844.2| Oryza sativa (japonica cultivar-group) geno... 62 7e-007
dbj|AP004801.3| Oryza sativa (japonica cultivar-group) geno... 62 7e-007
gb|AACV01003779.1| Oryza sativa (japonica cultivar-group) c... 62 7e-007
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 62 7e-007
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 62 7e-007
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 62 7e-007
gb|CF308661.1|CF308661 ABF--02-J02.g1 ABF3-overexpressing t... 58 1e-005
dbj|AP003993.1| Oryza sativa (japonica cultivar-group) chro... 56 4e-005
gb|CB647764.1|CB647764 OSJNEb10N11.f OSJNEb Oryza sativa (j... 54 2e-004
gb|AACV01010193.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 44 0.17
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromoso... 44 0.17
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 44 0.17
>ref|NM_192821.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1341
Score = 626 bits (316), Expect = e-177
Identities = 751/899 (83%)
Strand = Plus / Minus
Query: 272 agcgaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggc 331
||||||||||||||||||||| |||| |||||| ||||| || |||||||| ||||||
Sbjct: 1337 agcgaatttgtacagaagctcatcccggacgtgctggtcagctccgtgcacggcgacggc 1278
Query: 332 tgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcacca 391
||||||||||| || | |||||||| ||||||||||||||||||||||| | ||| ||
Sbjct: 1277 tgcacgtcgagcgccgccccgctgacggcctcgcacttccacggccggaccgccgcgccg 1218
Query: 392 ccagtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcccttg 451
|| ||| ||| ||||| ||||||||||||| |||||||||||| | | ||| ||||||
Sbjct: 1217 ccgttgagcttcacgttggacaggcagatcctggagaaggccgacgtcgcgatccccttg 1158
Query: 452 atcagcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacg 511
||| ||| |||||||||| ||||||||||||||| ||||| | ||| ||| |||| |||
Sbjct: 1157 atcgaccctgcctccctgatgttctggccctggacgttcttgatcgtcaggccgtccacg 1098
Query: 512 atcgggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatc 571
| |||||||| |||||| ||||| |||||||||||| |||||||||||| |||||
Sbjct: 1097 acggggagcgcgttccggtcgtagcggtcgtcggggtgcccgccgacatcgccggcgatc 1038
Query: 572 cgcaggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaag 631
| ||||||||| |||||| ||||||||||| || ||||| |||| ||||| ||||||
Sbjct: 1037 ctcaggccgtagcggacggagtccagcgtcacgtcggagacggtgacgttccggatgaac 978
Query: 632 ccgcccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagttcaag 691
|| |||||||| ||||||||||||| ||||| || ||||| ||| |||||||||| | |
Sbjct: 977 cctcccctgccggtgttggtcttgatgtggatgccgaaccccgagctgaagaagttgagg 918
Query: 692 tgttctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagccagca 751
|| || || ||||||| ||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 917 tgctccgcgaggacgtgctccacgccgccggacgtctcgctcccgacagcgaagccggcg 858
Query: 752 aacggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccataggcg 811
|| ||||||||||| |||||||| || | |||||| || |||||||| || |||||
Sbjct: 857 aagggggaggagccggtgatccggcggatggtgatgtgcgagctggggcgcccgtaggcc 798
Query: 812 attccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaatgtag 871
|| || ||||| ||||||||||||||||||||||| ||| || || ||||| ||||||
Sbjct: 797 atgccgtactcgtcccagccactcttgatggcgatcagatcatctcctgtcgagatgtag 738
Query: 872 caatcctcgatgcagatgttgctgctggaatctggatcaattccatccgtgttgggggag 931
|| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 737 cagtcctcgatgcagacgttgctgctggaatctggatcaattccatcagtgttgggtgag 678
Query: 932 tcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaataaacaggatgg 991
|||||||||||||| | ||||| ||||| ||||| ||||||||||| ||||||||||||
Sbjct: 677 tcatgtggagctagtacggtcacatttcttatcaccacattgctgcagtaaacaggatgg 618
Query: 992 atgttccagaatggcgaatcctgaaagacgacattggagacaatgatatcagaagagctc 1051
|||||||| || ||||||||||| ||||| ||||||||||| | | |||||||||| ||
Sbjct: 617 atgttccaaaacggcgaatcctggaagaccacattggagacgacaacatcagaagagttc 558
Query: 1052 atcagctcaagaaggtgaggccttgtgtagagcagnnnnnnnnncttccacatatcccac 1111
|||||||| || | ||||||||| ||| || | || ||||||||| ||||||
Sbjct: 557 atcagctcgagtaagtgaggcctagtgaagggtagtgtgcccttcttccacatgtcccac 498
Query: 1112 cacgcgctgccttaaccaccaatagttccattctcgcctgtgatgacaacatcctgaag 1170
||||| ||||||| ||| | ||||||||||| |||||||| |||||||||||||||||
Sbjct: 497 cacgcactgccttggccatcgatagttccattatcgcctgtaatgacaacatcctgaag 439
>dbj|AK058453.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-H05, full
insert sequence
Length = 1151
Score = 618 bits (312), Expect = e-174
Identities = 750/899 (83%)
Strand = Plus / Minus
Query: 272 agcgaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggc 331
|||||||||| |||||||||| |||| |||||| ||||| || |||||||| ||||||
Sbjct: 986 agcgaatttgcacagaagctcatcccggacgtgctggtcagctccgtgcacggcgacggc 927
Query: 332 tgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcacca 391
||||||||||| || | |||||||| ||||||||||||||||||||||| | ||| ||
Sbjct: 926 tgcacgtcgagcgccgccccgctgacggcctcgcacttccacggccggaccgccgcgccg 867
Query: 392 ccagtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcccttg 451
|| ||| ||| ||||| ||||||||||||| |||||||||||| | | ||| ||||||
Sbjct: 866 ccgttgagcttcacgttggacaggcagatcctggagaaggccgacgtcgcgatccccttg 807
Query: 452 atcagcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacg 511
||| ||| |||||||||| ||||||||||||||| ||||| | ||| ||| |||| |||
Sbjct: 806 atcgaccctgcctccctgatgttctggccctggacgttcttgatcgtcaggccgtccacg 747
Query: 512 atcgggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatc 571
| |||||||| |||||| ||||| |||||||||||| |||||||||||| |||||
Sbjct: 746 acggggagcgcgttccggtcgtagcggtcgtcggggtgcccgccgacatcgccggcgatc 687
Query: 572 cgcaggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaag 631
| ||||||||| |||||| ||||||||||| || ||||| |||| ||||| ||||||
Sbjct: 686 ctcaggccgtagcggacggagtccagcgtcacgtcggagacggtgacgttccggatgaac 627
Query: 632 ccgcccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagttcaag 691
|| |||||||| ||||||||||||| ||||| || ||||| ||| |||||||||| | |
Sbjct: 626 cctcccctgccggtgttggtcttgatgtggatgccgaaccccgagctgaagaagttgagg 567
Query: 692 tgttctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagccagca 751
|| || || ||||||| ||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 566 tgctccgcgaggacgtgctccacgccgccggacgtctcgctcccgacagcgaagccggcg 507
Query: 752 aacggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccataggcg 811
|| ||||||||||| |||||||| || | |||||| || |||||||| || |||||
Sbjct: 506 aagggggaggagccggtgatccggcggatggtgatgtgcgagctggggcgcccgtaggcc 447
Query: 812 attccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaatgtag 871
|| || ||||| ||||||||||||||||||||||| ||| || || ||||| ||||||
Sbjct: 446 atgccgtactcgtcccagccactcttgatggcgatcagatcatctcctgtcgagatgtag 387
Query: 872 caatcctcgatgcagatgttgctgctggaatctggatcaattccatccgtgttgggggag 931
|| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 386 cagtcctcgatgcagacgttgctgctggaatctggatcaattccatcagtgttgggtgag 327
Query: 932 tcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaataaacaggatgg 991
|||||||||||||| | ||||| ||||| ||||| ||||||||||| ||||||||||||
Sbjct: 326 tcatgtggagctagtacggtcacatttcttatcaccacattgctgcagtaaacaggatgg 267
Query: 992 atgttccagaatggcgaatcctgaaagacgacattggagacaatgatatcagaagagctc 1051
|||||||| || ||||||||||| ||||| ||||||||||| | | |||||||||| ||
Sbjct: 266 atgttccaaaacggcgaatcctggaagaccacattggagacgacaacatcagaagagttc 207
Query: 1052 atcagctcaagaaggtgaggccttgtgtagagcagnnnnnnnnncttccacatatcccac 1111
|||||||| || | ||||||||| ||| || | || ||||||||| ||||||
Sbjct: 206 atcagctcgagtaagtgaggcctagtgaagggtagtgtgcccttcttccacatgtcccac 147
Query: 1112 cacgcgctgccttaaccaccaatagttccattctcgcctgtgatgacaacatcctgaag 1170
||||| ||||||| ||| | ||||||||||| |||||||| |||||||||||||||||
Sbjct: 146 cacgcactgccttggccatcgatagttccattatcgcctgtaatgacaacatcctgaag 88
>dbj|AK099329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033013K19, full
insert sequence
Length = 949
Score = 569 bits (287), Expect = e-159
Identities = 659/783 (84%)
Strand = Plus / Minus
Query: 272 agcgaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggc 331
||||||||||||||||||||| |||| |||||| ||||| || |||||||| ||||||
Sbjct: 783 agcgaatttgtacagaagctcatcccggacgtgctggtcagctccgtgcacggcgacggc 724
Query: 332 tgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcacca 391
||||||||||| || | |||||||| ||||||||||||||||||||||| | ||| ||
Sbjct: 723 tgcacgtcgagcgccgccccgctgacggcctcgcacttccacggccggaccgccgcgccg 664
Query: 392 ccagtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcccttg 451
|| ||| ||| ||||| ||||||||||||| |||||||||||| | | ||| ||||||
Sbjct: 663 ccgttgagcttcacgttggacaggcagatcctggagaaggccgacgtcgcgatccccttg 604
Query: 452 atcagcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacg 511
||| ||| |||||||||| ||||||||||||||| ||||| | ||| ||| |||| |||
Sbjct: 603 atcgaccctgcctccctgatgttctggccctggacgttcttgatcgtcaggccgtccacg 544
Query: 512 atcgggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatc 571
| |||||||| |||||| ||||| |||||||||||| |||||||||||| |||||
Sbjct: 543 acggggagcgcgttccggtcgtagcggtcgtcggggtgcccgccgacatcgccggcgatc 484
Query: 572 cgcaggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaag 631
| ||||||||| |||||| ||||||||||| || ||||| |||| ||||| ||||||
Sbjct: 483 ctcaggccgtagcggacggagtccagcgtcacgtcggagacggtgacgttccggatgaac 424
Query: 632 ccgcccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagttcaag 691
|| |||||||| ||||||||||||| ||||| || ||||| ||| |||||||||| | |
Sbjct: 423 cctcccctgccggtgttggtcttgatgtggatgccgaaccccgagctgaagaagttgagg 364
Query: 692 tgttctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagccagca 751
|| || || ||||||| ||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 363 tgctccgcgaggacgtgctccacgccgccggacgtctcgctcccgacagcgaagccggcg 304
Query: 752 aacggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccataggcg 811
|| ||||||||||| |||||||| || | |||||| || |||||||| || |||||
Sbjct: 303 aagggggaggagccggtgatccggcggatggtgatgtgcgagctggggcgcccgtaggcc 244
Query: 812 attccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaatgtag 871
|| || ||||| ||||||||||||||||||||||| ||| || || ||||| ||||||
Sbjct: 243 atgccgtactcgtcccagccactcttgatggcgatcagatcatctcctgtcgagatgtag 184
Query: 872 caatcctcgatgcagatgttgctgctggaatctggatcaattccatccgtgttgggggag 931
|| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 183 cagtcctcgatgcagacgttgctgctggaatctggatcaattccatcagtgttgggtgag 124
Query: 932 tcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaataaacaggatgg 991
|||||||||||||| | ||||| ||||| ||||| ||||||||||| ||||||||||||
Sbjct: 123 tcatgtggagctagtacggtcacatttcttatcaccacattgctgcagtaaacaggatgg 64
Query: 992 atgttccagaatggcgaatcctgaaagacgacattggagacaatgatatcagaagagctc 1051
|||||||| || ||||||||||| ||||| ||||||||||| | | |||||||||| ||
Sbjct: 63 atgttccaaaacggcgaatcctggaagaccacattggagacgacaacatcagaagagttc 4
Query: 1052 atc 1054
|||
Sbjct: 3 atc 1
>gb|AACV01001842.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001842, whole
genome shotgun sequence
Length = 46255
Score = 416 bits (210), Expect = e-113
Identities = 528/634 (83%)
Strand = Plus / Plus
Query: 272 agcgaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggc 331
||||||||||||||||||||| |||| |||||| ||||| || |||||||| ||||||
Sbjct: 45576 agcgaatttgtacagaagctcatcccggacgtgctggtcagctccgtgcacggcgacggc 45635
Query: 332 tgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcacca 391
||||||||||| || | |||||||| ||||||||||||||||||||||| | ||| ||
Sbjct: 45636 tgcacgtcgagcgccgccccgctgacggcctcgcacttccacggccggaccgccgcgccg 45695
Query: 392 ccagtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcccttg 451
|| ||| ||| ||||| ||||||||||||| |||||||||||| | | ||| ||||||
Sbjct: 45696 ccgttgagcttcacgttggacaggcagatcctggagaaggccgacgtcgcgatccccttg 45755
Query: 452 atcagcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacg 511
||| ||| |||||||||| ||||||||||||||| ||||| | ||| ||| |||| |||
Sbjct: 45756 atcgaccctgcctccctgatgttctggccctggacgttcttgatcgtcaggccgtccacg 45815
Query: 512 atcgggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatc 571
| |||||||| |||||| ||||| |||||||||||| |||||||||||| |||||
Sbjct: 45816 acggggagcgcgttccggtcgtagcggtcgtcggggtgcccgccgacatcgccggcgatc 45875
Query: 572 cgcaggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaag 631
| ||||||||| |||||| ||||||||||| || ||||| |||| ||||| ||||||
Sbjct: 45876 ctcaggccgtagcggacggagtccagcgtcacgtcggagacggtgacgttccggatgaac 45935
Query: 632 ccgcccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagttcaag 691
|| |||||||| ||||||||||||| ||||| || ||||| ||| |||||||||| | |
Sbjct: 45936 cctcccctgccggtgttggtcttgatgtggatgccgaaccccgagctgaagaagttgagg 45995
Query: 692 tgttctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagccagca 751
|| || || ||||||| ||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 45996 tgctccgcgaggacgtgctccacgccgccggacgtctcgctcccgacagcgaagccggcg 46055
Query: 752 aacggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccataggcg 811
|| ||||||||||| |||||||| || | |||||| || |||||||| || |||||
Sbjct: 46056 aagggggaggagccggtgatccggcggatggtgatgtgcgagctggggcgcccgtaggcc 46115
Query: 812 attccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaatgtag 871
|| || ||||| ||||||||||||||||||||||| ||| || || ||||| ||||||
Sbjct: 46116 atgccgtactcgtcccagccactcttgatggcgatcagatcatctcctgtcgagatgtag 46175
Query: 872 caatcctcgatgcagatgttgctgctggaatctg 905
|| ||||||||||||| |||||||||||||||||
Sbjct: 46176 cagtcctcgatgcagacgttgctgctggaatctg 46209
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 416 bits (210), Expect = e-113
Identities = 528/634 (83%)
Strand = Plus / Minus
Query: 272 agcgaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggc 331
||||||||||||||||||||| |||| |||||| ||||| || |||||||| ||||||
Sbjct: 24706989 agcgaatttgtacagaagctcatcccggacgtgctggtcagctccgtgcacggcgacggc 24706930
Query: 332 tgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcacca 391
||||||||||| || | |||||||| ||||||||||||||||||||||| | ||| ||
Sbjct: 24706929 tgcacgtcgagcgccgccccgctgacggcctcgcacttccacggccggaccgccgcgccg 24706870
Query: 392 ccagtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcccttg 451
|| ||| ||| ||||| ||||||||||||| |||||||||||| | | ||| ||||||
Sbjct: 24706869 ccgttgagcttcacgttggacaggcagatcctggagaaggccgacgtcgcgatccccttg 24706810
Query: 452 atcagcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacg 511
||| ||| |||||||||| ||||||||||||||| ||||| | ||| ||| |||| |||
Sbjct: 24706809 atcgaccctgcctccctgatgttctggccctggacgttcttgatcgtcaggccgtccacg 24706750
Query: 512 atcgggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatc 571
| |||||||| |||||| ||||| |||||||||||| |||||||||||| |||||
Sbjct: 24706749 acggggagcgcgttccggtcgtagcggtcgtcggggtgcccgccgacatcgccggcgatc 24706690
Query: 572 cgcaggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaag 631
| ||||||||| |||||| ||||||||||| || ||||| |||| ||||| ||||||
Sbjct: 24706689 ctcaggccgtagcggacggagtccagcgtcacgtcggagacggtgacgttccggatgaac 24706630
Query: 632 ccgcccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagttcaag 691
|| |||||||| ||||||||||||| ||||| || ||||| ||| |||||||||| | |
Sbjct: 24706629 cctcccctgccggtgttggtcttgatgtggatgccgaaccccgagctgaagaagttgagg 24706570
Query: 692 tgttctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagccagca 751
|| || || ||||||| ||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 24706569 tgctccgcgaggacgtgctccacgccgccggacgtctcgctcccgacagcgaagccggcg 24706510
Query: 752 aacggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccataggcg 811
|| ||||||||||| |||||||| || | |||||| || |||||||| || |||||
Sbjct: 24706509 aagggggaggagccggtgatccggcggatggtgatgtgcgagctggggcgcccgtaggcc 24706450
Query: 812 attccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaatgtag 871
|| || ||||| ||||||||||||||||||||||| ||| || || ||||| ||||||
Sbjct: 24706449 atgccgtactcgtcccagccactcttgatggcgatcagatcatctcctgtcgagatgtag 24706390
Query: 872 caatcctcgatgcagatgttgctgctggaatctg 905
|| ||||||||||||| |||||||||||||||||
Sbjct: 24706389 cagtcctcgatgcagacgttgctgctggaatctg 24706356
Score = 109 bits (55), Expect = 3e-021
Identities = 145/178 (81%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagaca 1033
||||| |||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 24705597 ctgcagtaaacaggatggatgttccaaaacggcgaatcctggaagaccacattggagacg 24705538
Query: 1034 atgatatcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnn 1093
| | |||||||||| |||||||||| || | ||||||||| ||| || | ||
Sbjct: 24705537 acaacatcagaagagttcatcagctcgagtaagtgaggcctagtgaagggtagtgtgccc 24705478
Query: 1094 nncttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||| ||||||||||| ||||||| ||| | ||||||||||| |||||||
Sbjct: 24705477 ttcttccacatgtcccaccacgcactgccttggccatcgatagttccattatcgcctg 24705420
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtggagctaggatagtcacgtttctga 962
|||||||||||||||| |||||||| ||||||||||||||||| | ||||| ||||| |
Sbjct: 24706240 ctggatcaattccatcagtgttgggtgagtcatgtggagctagtacggtcacatttctta 24706181
Query: 963 tcacaacattgctgca 978
|||| |||||||||||
Sbjct: 24706180 tcaccacattgctgca 24706165
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 416 bits (210), Expect = e-113
Identities = 528/634 (83%)
Strand = Plus / Minus
Query: 272 agcgaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggc 331
||||||||||||||||||||| |||| |||||| ||||| || |||||||| ||||||
Sbjct: 7625221 agcgaatttgtacagaagctcatcccggacgtgctggtcagctccgtgcacggcgacggc 7625162
Query: 332 tgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcacca 391
||||||||||| || | |||||||| ||||||||||||||||||||||| | ||| ||
Sbjct: 7625161 tgcacgtcgagcgccgccccgctgacggcctcgcacttccacggccggaccgccgcgccg 7625102
Query: 392 ccagtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcccttg 451
|| ||| ||| ||||| ||||||||||||| |||||||||||| | | ||| ||||||
Sbjct: 7625101 ccgttgagcttcacgttggacaggcagatcctggagaaggccgacgtcgcgatccccttg 7625042
Query: 452 atcagcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacg 511
||| ||| |||||||||| ||||||||||||||| ||||| | ||| ||| |||| |||
Sbjct: 7625041 atcgaccctgcctccctgatgttctggccctggacgttcttgatcgtcaggccgtccacg 7624982
Query: 512 atcgggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatc 571
| |||||||| |||||| ||||| |||||||||||| |||||||||||| |||||
Sbjct: 7624981 acggggagcgcgttccggtcgtagcggtcgtcggggtgcccgccgacatcgccggcgatc 7624922
Query: 572 cgcaggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaag 631
| ||||||||| |||||| ||||||||||| || ||||| |||| ||||| ||||||
Sbjct: 7624921 ctcaggccgtagcggacggagtccagcgtcacgtcggagacggtgacgttccggatgaac 7624862
Query: 632 ccgcccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagttcaag 691
|| |||||||| ||||||||||||| ||||| || ||||| ||| |||||||||| | |
Sbjct: 7624861 cctcccctgccggtgttggtcttgatgtggatgccgaaccccgagctgaagaagttgagg 7624802
Query: 692 tgttctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagccagca 751
|| || || ||||||| ||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 7624801 tgctccgcgaggacgtgctccacgccgccggacgtctcgctcccgacagcgaagccggcg 7624742
Query: 752 aacggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccataggcg 811
|| ||||||||||| |||||||| || | |||||| || |||||||| || |||||
Sbjct: 7624741 aagggggaggagccggtgatccggcggatggtgatgtgcgagctggggcgcccgtaggcc 7624682
Query: 812 attccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaatgtag 871
|| || ||||| ||||||||||||||||||||||| ||| || || ||||| ||||||
Sbjct: 7624681 atgccgtactcgtcccagccactcttgatggcgatcagatcatctcctgtcgagatgtag 7624622
Query: 872 caatcctcgatgcagatgttgctgctggaatctg 905
|| ||||||||||||| |||||||||||||||||
Sbjct: 7624621 cagtcctcgatgcagacgttgctgctggaatctg 7624588
Score = 109 bits (55), Expect = 3e-021
Identities = 145/178 (81%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagaca 1033
||||| |||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 7623829 ctgcagtaaacaggatggatgttccaaaacggcgaatcctggaagaccacattggagacg 7623770
Query: 1034 atgatatcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnn 1093
| | |||||||||| |||||||||| || | ||||||||| ||| || | ||
Sbjct: 7623769 acaacatcagaagagttcatcagctcgagtaagtgaggcctagtgaagggtagtgtgccc 7623710
Query: 1094 nncttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||| ||||||||||| ||||||| ||| | ||||||||||| |||||||
Sbjct: 7623709 ttcttccacatgtcccaccacgcactgccttggccatcgatagttccattatcgcctg 7623652
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtggagctaggatagtcacgtttctga 962
|||||||||||||||| |||||||| ||||||||||||||||| | ||||| ||||| |
Sbjct: 7624472 ctggatcaattccatcagtgttgggtgagtcatgtggagctagtacggtcacatttctta 7624413
Query: 963 tcacaacattgctgca 978
|||| |||||||||||
Sbjct: 7624412 tcaccacattgctgca 7624397
>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1040D09
Length = 148102
Score = 416 bits (210), Expect = e-113
Identities = 528/634 (83%)
Strand = Plus / Minus
Query: 272 agcgaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggc 331
||||||||||||||||||||| |||| |||||| ||||| || |||||||| ||||||
Sbjct: 54235 agcgaatttgtacagaagctcatcccggacgtgctggtcagctccgtgcacggcgacggc 54176
Query: 332 tgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcacca 391
||||||||||| || | |||||||| ||||||||||||||||||||||| | ||| ||
Sbjct: 54175 tgcacgtcgagcgccgccccgctgacggcctcgcacttccacggccggaccgccgcgccg 54116
Query: 392 ccagtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcccttg 451
|| ||| ||| ||||| ||||||||||||| |||||||||||| | | ||| ||||||
Sbjct: 54115 ccgttgagcttcacgttggacaggcagatcctggagaaggccgacgtcgcgatccccttg 54056
Query: 452 atcagcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacg 511
||| ||| |||||||||| ||||||||||||||| ||||| | ||| ||| |||| |||
Sbjct: 54055 atcgaccctgcctccctgatgttctggccctggacgttcttgatcgtcaggccgtccacg 53996
Query: 512 atcgggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatc 571
| |||||||| |||||| ||||| |||||||||||| |||||||||||| |||||
Sbjct: 53995 acggggagcgcgttccggtcgtagcggtcgtcggggtgcccgccgacatcgccggcgatc 53936
Query: 572 cgcaggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaag 631
| ||||||||| |||||| ||||||||||| || ||||| |||| ||||| ||||||
Sbjct: 53935 ctcaggccgtagcggacggagtccagcgtcacgtcggagacggtgacgttccggatgaac 53876
Query: 632 ccgcccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagttcaag 691
|| |||||||| ||||||||||||| ||||| || ||||| ||| |||||||||| | |
Sbjct: 53875 cctcccctgccggtgttggtcttgatgtggatgccgaaccccgagctgaagaagttgagg 53816
Query: 692 tgttctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagccagca 751
|| || || ||||||| ||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 53815 tgctccgcgaggacgtgctccacgccgccggacgtctcgctcccgacagcgaagccggcg 53756
Query: 752 aacggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccataggcg 811
|| ||||||||||| |||||||| || | |||||| || |||||||| || |||||
Sbjct: 53755 aagggggaggagccggtgatccggcggatggtgatgtgcgagctggggcgcccgtaggcc 53696
Query: 812 attccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaatgtag 871
|| || ||||| ||||||||||||||||||||||| ||| || || ||||| ||||||
Sbjct: 53695 atgccgtactcgtcccagccactcttgatggcgatcagatcatctcctgtcgagatgtag 53636
Query: 872 caatcctcgatgcagatgttgctgctggaatctg 905
|| ||||||||||||| |||||||||||||||||
Sbjct: 53635 cagtcctcgatgcagacgttgctgctggaatctg 53602
Score = 109 bits (55), Expect = 3e-021
Identities = 145/178 (81%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagaca 1033
||||| |||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 52843 ctgcagtaaacaggatggatgttccaaaacggcgaatcctggaagaccacattggagacg 52784
Query: 1034 atgatatcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnn 1093
| | |||||||||| |||||||||| || | ||||||||| ||| || | ||
Sbjct: 52783 acaacatcagaagagttcatcagctcgagtaagtgaggcctagtgaagggtagtgtgccc 52724
Query: 1094 nncttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||| ||||||||||| ||||||| ||| | ||||||||||| |||||||
Sbjct: 52723 ttcttccacatgtcccaccacgcactgccttggccatcgatagttccattatcgcctg 52666
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtggagctaggatagtcacgtttctga 962
|||||||||||||||| |||||||| ||||||||||||||||| | ||||| ||||| |
Sbjct: 53486 ctggatcaattccatcagtgttgggtgagtcatgtggagctagtacggtcacatttctta 53427
Query: 963 tcacaacattgctgca 978
|||| |||||||||||
Sbjct: 53426 tcaccacattgctgca 53411
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 416 bits (210), Expect = e-113
Identities = 528/634 (83%)
Strand = Plus / Minus
Query: 272 agcgaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggc 331
||||||||||||||||||||| |||| |||||| ||||| || |||||||| ||||||
Sbjct: 7612952 agcgaatttgtacagaagctcatcccggacgtgctggtcagctccgtgcacggcgacggc 7612893
Query: 332 tgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcacca 391
||||||||||| || | |||||||| ||||||||||||||||||||||| | ||| ||
Sbjct: 7612892 tgcacgtcgagcgccgccccgctgacggcctcgcacttccacggccggaccgccgcgccg 7612833
Query: 392 ccagtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcccttg 451
|| ||| ||| ||||| ||||||||||||| |||||||||||| | | ||| ||||||
Sbjct: 7612832 ccgttgagcttcacgttggacaggcagatcctggagaaggccgacgtcgcgatccccttg 7612773
Query: 452 atcagcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacg 511
||| ||| |||||||||| ||||||||||||||| ||||| | ||| ||| |||| |||
Sbjct: 7612772 atcgaccctgcctccctgatgttctggccctggacgttcttgatcgtcaggccgtccacg 7612713
Query: 512 atcgggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatc 571
| |||||||| |||||| ||||| |||||||||||| |||||||||||| |||||
Sbjct: 7612712 acggggagcgcgttccggtcgtagcggtcgtcggggtgcccgccgacatcgccggcgatc 7612653
Query: 572 cgcaggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaag 631
| ||||||||| |||||| ||||||||||| || ||||| |||| ||||| ||||||
Sbjct: 7612652 ctcaggccgtagcggacggagtccagcgtcacgtcggagacggtgacgttccggatgaac 7612593
Query: 632 ccgcccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagttcaag 691
|| |||||||| ||||||||||||| ||||| || ||||| ||| |||||||||| | |
Sbjct: 7612592 cctcccctgccggtgttggtcttgatgtggatgccgaaccccgagctgaagaagttgagg 7612533
Query: 692 tgttctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagccagca 751
|| || || ||||||| ||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 7612532 tgctccgcgaggacgtgctccacgccgccggacgtctcgctcccgacagcgaagccggcg 7612473
Query: 752 aacggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccataggcg 811
|| ||||||||||| |||||||| || | |||||| || |||||||| || |||||
Sbjct: 7612472 aagggggaggagccggtgatccggcggatggtgatgtgcgagctggggcgcccgtaggcc 7612413
Query: 812 attccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaatgtag 871
|| || ||||| ||||||||||||||||||||||| ||| || || ||||| ||||||
Sbjct: 7612412 atgccgtactcgtcccagccactcttgatggcgatcagatcatctcctgtcgagatgtag 7612353
Query: 872 caatcctcgatgcagatgttgctgctggaatctg 905
|| ||||||||||||| |||||||||||||||||
Sbjct: 7612352 cagtcctcgatgcagacgttgctgctggaatctg 7612319
Score = 109 bits (55), Expect = 3e-021
Identities = 145/178 (81%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagaca 1033
||||| |||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 7611613 ctgcagtaaacaggatggatgttccaaaacggcgaatcctggaagaccacattggagacg 7611554
Query: 1034 atgatatcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnn 1093
| | |||||||||| |||||||||| || | ||||||||| ||| || | ||
Sbjct: 7611553 acaacatcagaagagttcatcagctcgagtaagtgaggcctagtgaagggtagtgtgccc 7611494
Query: 1094 nncttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||| ||||||||||| ||||||| ||| | ||||||||||| |||||||
Sbjct: 7611493 ttcttccacatgtcccaccacgcactgccttggccatcgatagttccattatcgcctg 7611436
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 416 bits (210), Expect = e-113
Identities = 528/634 (83%)
Strand = Plus / Minus
Query: 272 agcgaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggc 331
||||||||||||||||||||| |||| |||||| ||||| || |||||||| ||||||
Sbjct: 24238075 agcgaatttgtacagaagctcatcccggacgtgctggtcagctccgtgcacggcgacggc 24238016
Query: 332 tgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcacca 391
||||||||||| || | |||||||| ||||||||||||||||||||||| | ||| ||
Sbjct: 24238015 tgcacgtcgagcgccgccccgctgacggcctcgcacttccacggccggaccgccgcgccg 24237956
Query: 392 ccagtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcccttg 451
|| ||| ||| ||||| ||||||||||||| |||||||||||| | | ||| ||||||
Sbjct: 24237955 ccgttgagcttcacgttggacaggcagatcctggagaaggccgacgtcgcgatccccttg 24237896
Query: 452 atcagcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacg 511
||| ||| |||||||||| ||||||||||||||| ||||| | ||| ||| |||| |||
Sbjct: 24237895 atcgaccctgcctccctgatgttctggccctggacgttcttgatcgtcaggccgtccacg 24237836
Query: 512 atcgggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatc 571
| |||||||| |||||| ||||| |||||||||||| |||||||||||| |||||
Sbjct: 24237835 acggggagcgcgttccggtcgtagcggtcgtcggggtgcccgccgacatcgccggcgatc 24237776
Query: 572 cgcaggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaag 631
| ||||||||| |||||| ||||||||||| || ||||| |||| ||||| ||||||
Sbjct: 24237775 ctcaggccgtagcggacggagtccagcgtcacgtcggagacggtgacgttccggatgaac 24237716
Query: 632 ccgcccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagttcaag 691
|| |||||||| ||||||||||||| ||||| || ||||| ||| |||||||||| | |
Sbjct: 24237715 cctcccctgccggtgttggtcttgatgtggatgccgaaccccgagctgaagaagttgagg 24237656
Query: 692 tgttctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagccagca 751
|| || || ||||||| ||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 24237655 tgctccgcgaggacgtgctccacgccgccggacgtctcgctcccgacagcgaagccggcg 24237596
Query: 752 aacggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccataggcg 811
|| ||||||||||| |||||||| || | |||||| || |||||||| || |||||
Sbjct: 24237595 aagggggaggagccggtgatccggcggatggtgatgtgcgagctggggcgcccgtaggcc 24237536
Query: 812 attccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaatgtag 871
|| || ||||| ||||||||||||||||||||||| ||| || || ||||| ||||||
Sbjct: 24237535 atgccgtactcgtcccagccactcttgatggcgatcagatcatctcctgtcgagatgtag 24237476
Query: 872 caatcctcgatgcagatgttgctgctggaatctg 905
|| ||||||||||||| |||||||||||||||||
Sbjct: 24237475 cagtcctcgatgcagacgttgctgctggaatctg 24237442
Score = 109 bits (55), Expect = 3e-021
Identities = 145/178 (81%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagaca 1033
||||| |||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 24236736 ctgcagtaaacaggatggatgttccaaaacggcgaatcctggaagaccacattggagacg 24236677
Query: 1034 atgatatcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnn 1093
| | |||||||||| |||||||||| || | ||||||||| ||| || | ||
Sbjct: 24236676 acaacatcagaagagttcatcagctcgagtaagtgaggcctagtgaagggtagtgtgccc 24236617
Query: 1094 nncttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||| ||||||||||| ||||||| ||| | ||||||||||| |||||||
Sbjct: 24236616 ttcttccacatgtcccaccacgcactgccttggccatcgatagttccattatcgcctg 24236559
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 794 ctggggcggccataggcgattccatactcatcccagccactcttgatggcgatggaatcg 853
||||| || ||| |||| || |||||||||||||||||||||||||||| ||| | ||
Sbjct: 1656362 ctgggtcgcccaaaggctatgccatactcatcccagccactcttgatggagatcaagtca 1656421
Query: 854 tcaccagtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|| || |||||||||||| ||||||| ||||||| |||||||| |||||||
Sbjct: 1656422 tctcctgtcgaaatgtaggaatcctcaatgcagacattgctgcttgaatctg 1656473
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggaga 1031
|||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 1656830 ctgcaatacaccggatggatgttccaaaatggcgaatcctggaagacgacattggaga 1656887
Score = 60.0 bits (30), Expect = 3e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1098 tccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||||||||||| ||||||||| ||| |||| ||||||||||| ||||
Sbjct: 1656954 tccacatatcccaccacacgctgccttgcccatcaattgttccattctcacctg 1657007
Score = 58.0 bits (29), Expect = 1e-005
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 308 gtcagttctgtgcacggggacggctgcacgtcgagagcgccaccgctgacagc 360
||||| |||| |||||| || |||||||| || ||||||||||||||||||||
Sbjct: 1655876 gtcagctctgcgcacggcgatggctgcacatcaagagcgccaccgctgacagc 1655928
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtggagc 942
|||||||||||||||| || || |||||||||||||||||
Sbjct: 1656557 ctggatcaattccatcggtatttggggagtcatgtggagc 1656596
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 599 gtcacatccgagacagtgatgttcctgatgaagccgcccctgcctgtgttggtcttgaca 658
||||| || ||||| |||||||| | |||||| || ||||| || | |||||||||||||
Sbjct: 1656167 gtcacttctgagaccgtgatgtttcggatgaatcctccccttccggagttggtcttgaca 1656226
Query: 659 tggat 663
|||||
Sbjct: 1656227 tggat 1656231
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 416 bits (210), Expect = e-113
Identities = 528/634 (83%)
Strand = Plus / Minus
Query: 272 agcgaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggc 331
||||||||||||||||||||| |||| |||||| ||||| || |||||||| ||||||
Sbjct: 24628272 agcgaatttgtacagaagctcatcccggacgtgctggtcagctccgtgcacggcgacggc 24628213
Query: 332 tgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcacca 391
||||||||||| || | |||||||| ||||||||||||||||||||||| | ||| ||
Sbjct: 24628212 tgcacgtcgagcgccgccccgctgacggcctcgcacttccacggccggaccgccgcgccg 24628153
Query: 392 ccagtgaacttgacgttcgacaggcagatccgggagaaggccgagttggggatgcccttg 451
|| ||| ||| ||||| ||||||||||||| |||||||||||| | | ||| ||||||
Sbjct: 24628152 ccgttgagcttcacgttggacaggcagatcctggagaaggccgacgtcgcgatccccttg 24628093
Query: 452 atcagcccagcctccctgacgttctggccctggacattctttaccgtaagggcgtcgacg 511
||| ||| |||||||||| ||||||||||||||| ||||| | ||| ||| |||| |||
Sbjct: 24628092 atcgaccctgcctccctgatgttctggccctggacgttcttgatcgtcaggccgtccacg 24628033
Query: 512 atcgggagcgcactccggttgtagctgtcgtcggggtgattgccgacatcgccaacgatc 571
| |||||||| |||||| ||||| |||||||||||| |||||||||||| |||||
Sbjct: 24628032 acggggagcgcgttccggtcgtagcggtcgtcggggtgcccgccgacatcgccggcgatc 24627973
Query: 572 cgcaggccgtaccggacgttatccagcgtcacatccgagacagtgatgttcctgatgaag 631
| ||||||||| |||||| ||||||||||| || ||||| |||| ||||| ||||||
Sbjct: 24627972 ctcaggccgtagcggacggagtccagcgtcacgtcggagacggtgacgttccggatgaac 24627913
Query: 632 ccgcccctgcctgtgttggtcttgacatggatcccaaaccctgagttgaagaagttcaag 691
|| |||||||| ||||||||||||| ||||| || ||||| ||| |||||||||| | |
Sbjct: 24627912 cctcccctgccggtgttggtcttgatgtggatgccgaaccccgagctgaagaagttgagg 24627853
Query: 692 tgttctgcaaggacgttctccacgccacctgatgtctcgcttccgaccgcgaagccagca 751
|| || || ||||||| ||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 24627852 tgctccgcgaggacgtgctccacgccgccggacgtctcgctcccgacagcgaagccggcg 24627793
Query: 752 aacggggaggagcctgtgatccgccgcacggtgattccagaactggggcggccataggcg 811
|| ||||||||||| |||||||| || | |||||| || |||||||| || |||||
Sbjct: 24627792 aagggggaggagccggtgatccggcggatggtgatgtgcgagctggggcgcccgtaggcc 24627733
Query: 812 attccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaaatgtag 871
|| || ||||| ||||||||||||||||||||||| ||| || || ||||| ||||||
Sbjct: 24627732 atgccgtactcgtcccagccactcttgatggcgatcagatcatctcctgtcgagatgtag 24627673
Query: 872 caatcctcgatgcagatgttgctgctggaatctg 905
|| ||||||||||||| |||||||||||||||||
Sbjct: 24627672 cagtcctcgatgcagacgttgctgctggaatctg 24627639
Score = 109 bits (55), Expect = 3e-021
Identities = 145/178 (81%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagaca 1033
||||| |||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 24626880 ctgcagtaaacaggatggatgttccaaaacggcgaatcctggaagaccacattggagacg 24626821
Query: 1034 atgatatcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnn 1093
| | |||||||||| |||||||||| || | ||||||||| ||| || | ||
Sbjct: 24626820 acaacatcagaagagttcatcagctcgagtaagtgaggcctagtgaagggtagtgtgccc 24626761
Query: 1094 nncttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||| ||||||||||| ||||||| ||| | ||||||||||| |||||||
Sbjct: 24626760 ttcttccacatgtcccaccacgcactgccttggccatcgatagttccattatcgcctg 24626703
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtggagctaggatagtcacgtttctga 962
|||||||||||||||| |||||||| ||||||||||||||||| | ||||| ||||| |
Sbjct: 24627523 ctggatcaattccatcagtgttgggtgagtcatgtggagctagtacggtcacatttctta 24627464
Query: 963 tcacaacattgctgca 978
|||| |||||||||||
Sbjct: 24627463 tcaccacattgctgca 24627448
>ref|XM_475982.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1425
Score = 194 bits (98), Expect = 8e-047
Identities = 203/238 (85%)
Strand = Plus / Minus
Query: 794 ctggggcggccataggcgattccatactcatcccagccactcttgatggcgatggaatcg 853
||||| || ||| |||| || |||||||||||||||||||||||||||| ||| | ||
Sbjct: 905 ctgggtcgcccaaaggctatgccatactcatcccagccactcttgatggagatcaagtca 846
Query: 854 tcaccagtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctggatcaatt 913
|| || |||||||||||| ||||||| ||||||| |||||||| |||||||||||||||
Sbjct: 845 tctcctgtcgaaatgtaggaatcctcaatgcagacattgctgcttgaatctggatcaatt 786
Query: 914 ccatccgtgttgggggagtcatgtggagctaggatagtcacgtttctgatcacaacattg 973
||||| || || ||||||||||||||||| | | || ||||| | || || ||||||
Sbjct: 785 ccatcggtatttggggagtcatgtggagccaacacggttacgttcgtaattactacattg 726
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggaga 1031
|||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 725 ctgcaatacaccggatggatgttccaaaatggcgaatcctggaagacgacattggaga 668
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 1098 tccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctgtgatga 1157
||||||||||||||||| ||||||||| ||| |||| ||||||||||| ||||| ||||
Sbjct: 601 tccacatatcccaccacacgctgccttgcccatcaattgttccattctcacctgtaatga 542
Query: 1158 caacatcctg 1167
||||||||
Sbjct: 541 acacatcctg 532
Score = 58.0 bits (29), Expect = 1e-005
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 308 gtcagttctgtgcacggggacggctgcacgtcgagagcgccaccgctgacagc 360
||||| |||| |||||| || |||||||| || ||||||||||||||||||||
Sbjct: 1391 gtcagctctgcgcacggcgatggctgcacatcaagagcgccaccgctgacagc 1339
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 599 gtcacatccgagacagtgatgttcctgatgaagccgcccctgcctgtgttggtcttgaca 658
||||| || ||||| |||||||| | |||||| || ||||| || | |||||||||||||
Sbjct: 1100 gtcacttctgagaccgtgatgtttcggatgaatcctccccttccggagttggtcttgaca 1041
Query: 659 tggat 663
|||||
Sbjct: 1040 tggat 1036
>gb|CF308660.1|CF308660 ABF--02-J02.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-J02, mRNA sequence
Length = 577
Score = 137 bits (69), Expect = 2e-029
Identities = 129/149 (86%)
Strand = Plus / Minus
Query: 794 ctggggcggccataggcgattccatactcatcccagccactcttgatggcgatggaatcg 853
||||| || ||| |||| || |||||||||||||||||||||||||||| ||| | ||
Sbjct: 277 ctgggtcgcccaaaggctatgccatactcatcccagccactcttgatggagatcaagtca 218
Query: 854 tcaccagtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctggatcaatt 913
|| || |||||||||||| ||||||| ||||||| |||||||| |||||||||||||||
Sbjct: 217 tctcctgtcgaaatgtaggaatcctcaatgcagacattgctgcttgaatctggatcaatt 158
Query: 914 ccatccgtgttgggggagtcatgtggagc 942
||||| || || |||||||||||||||||
Sbjct: 157 ccatcggtatttggggagtcatgtggagc 129
Score = 77.8 bits (39), Expect = 1e-011
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattgg 1028
|||||||| || |||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 105 ctgcaatacaccggatggatgttccaaaatggcgaatcctggaagacgacattgg 51
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 599 gtcacatccgagacagtgatgttcctgatgaagccgcccctgcctgtgttggtcttgaca 658
||||| || ||||| |||||||| | |||||| || ||||| || | |||||||||||||
Sbjct: 472 gtcacttctgagaccgtgatgtttcggatgaatcctccccttccggagttggtcttgaca 413
Query: 659 tggat 663
|||||
Sbjct: 412 tggat 408
>dbj|AK059595.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D10, full
insert sequence
Length = 1812
Score = 121 bits (61), Expect = 9e-025
Identities = 163/197 (82%)
Strand = Plus / Minus
Query: 806 taggcgattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaa 865
|||||||| || ||||| |||||||| ||||||||||| | | |||||| || || ||
Sbjct: 1042 taggcgatgccgtactcgtcccagccgctcttgatggccacgagatcgtcgccggttgag 983
Query: 866 atgtagcaatcctcgatgcagatgttgctgctggaatctggatcaattccatccgtgttg 925
|||||| | ||||||||||| | |||| |||| ||||||||||||| |||||| ||||||
Sbjct: 982 atgtaggagtcctcgatgcatacgttggtgctagaatctggatcaactccatcggtgttg 923
Query: 926 ggggagtcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaataaaca 985
|| ||||||||||| || | ||| ||| ||| | || || |||||| ||||||||||
Sbjct: 922 ggcgagtcatgtggtgcgatgatcatcatgttggttatgaccacattgtcgcaataaaca 863
Query: 986 ggatggatgttccagaa 1002
|||||||||||||||||
Sbjct: 862 ggatggatgttccagaa 846
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||||||||||||| || ||||||||||||
Sbjct: 1234 gtgatgttcctgatgaagccgcccctcccaatgttggtcttga 1192
>dbj|AK061146.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D06, full
insert sequence
Length = 1660
Score = 121 bits (61), Expect = 9e-025
Identities = 163/197 (82%)
Strand = Plus / Minus
Query: 806 taggcgattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaa 865
|||||||| || ||||| |||||||| ||||||||||| | | |||||| || || ||
Sbjct: 905 taggcgatgccgtactcgtcccagccgctcttgatggccacgagatcgtcgccggttgag 846
Query: 866 atgtagcaatcctcgatgcagatgttgctgctggaatctggatcaattccatccgtgttg 925
|||||| | ||||||||||| | |||| |||| ||||||||||||| |||||| ||||||
Sbjct: 845 atgtaggagtcctcgatgcatacgttggtgctagaatctggatcaactccatcggtgttg 786
Query: 926 ggggagtcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaataaaca 985
|| ||||||||||| || | ||| ||| ||| | || || |||||| ||||||||||
Sbjct: 785 ggcgagtcatgtggtgcgatgatcatcatgttggttatgaccacattgtcgcaataaaca 726
Query: 986 ggatggatgttccagaa 1002
|||||||||||||||||
Sbjct: 725 ggatggatgttccagaa 709
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||||||||||||| || ||||||||||||
Sbjct: 1097 gtgatgttcctgatgaagccgcccctcccaatgttggtcttga 1055
>dbj|AK106194.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E05, full
insert sequence
Length = 1567
Score = 121 bits (61), Expect = 9e-025
Identities = 163/197 (82%)
Strand = Plus / Minus
Query: 806 taggcgattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaa 865
|||||||| || ||||| |||||||| ||||||||||| | | |||||| || || ||
Sbjct: 812 taggcgatgccgtactcgtcccagccgctcttgatggccacgagatcgtcgccggttgag 753
Query: 866 atgtagcaatcctcgatgcagatgttgctgctggaatctggatcaattccatccgtgttg 925
|||||| | ||||||||||| | |||| |||| ||||||||||||| |||||| ||||||
Sbjct: 752 atgtaggagtcctcgatgcatacgttggtgctagaatctggatcaactccatcggtgttg 693
Query: 926 ggggagtcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaataaaca 985
|| ||||||||||| || | ||| ||| ||| | || || |||||| ||||||||||
Sbjct: 692 ggcgagtcatgtggtgcgatgatcatcatgttggttatgaccacattgtcgcaataaaca 633
Query: 986 ggatggatgttccagaa 1002
|||||||||||||||||
Sbjct: 632 ggatggatgttccagaa 616
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||||||||||||| || ||||||||||||
Sbjct: 1004 gtgatgttcctgatgaagccgcccctcccaatgttggtcttga 962
>gb|AACV01001841.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001841, whole
genome shotgun sequence
Length = 41920
Score = 109 bits (55), Expect = 3e-021
Identities = 145/178 (81%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggagaca 1033
||||| |||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 560 ctgcagtaaacaggatggatgttccaaaacggcgaatcctggaagaccacattggagacg 619
Query: 1034 atgatatcagaagagctcatcagctcaagaaggtgaggccttgtgtagagcagnnnnnnn 1093
| | |||||||||| |||||||||| || | ||||||||| ||| || | ||
Sbjct: 620 acaacatcagaagagttcatcagctcgagtaagtgaggcctagtgaagggtagtgtgccc 679
Query: 1094 nncttccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||| ||||||||||| ||||||| ||| | ||||||||||| |||||||
Sbjct: 680 ttcttccacatgtcccaccacgcactgccttggccatcgatagttccattatcgcctg 737
>gb|AU172834.1|AU172834 AU172834 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31373, mRNA sequence
Length = 349
Score = 95.6 bits (48), Expect = 5e-017
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 272 agcgaatttgtacagaagctcgtcccagacgtggaagtcagttctgtgcacggggacggc 331
||||||||||| || |||||| |||| |||||| ||||| || |||||||| |||||
Sbjct: 146 agcgaatttgtncanaagctcatcccggacgtgctggtcagntccgtgcacggcgacggn 87
Query: 332 tgcacgtcgagagcgccaccgctgacagcctcgcacttccacggccggacaggcgcacca 391
||||||||||| || | ||| |||| ||||||||||||||||||||||| | ||| ||
Sbjct: 86 tgcacgtcgagcgccgccccgntgacggcctcgcacttccacggccggaccgccgcgccg 27
Query: 392 ccagtgaacttgacgttcgacaggca 417
|| ||| ||| ||||| ||||||||
Sbjct: 26 ccgttgagcttnacgttggacaggca 1
>gb|AC098598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1007_H05,
complete sequence
Length = 108479
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 794 ctggggcggccataggcgattccatactcatcccagccactcttgatggcgatggaatcg 853
||||| || ||| |||| || |||||||||||||||||||||||||||| ||| | ||
Sbjct: 30607 ctgggtcgcccaaaggctatgccatactcatcccagccactcttgatggagatcaagtca 30666
Query: 854 tcaccagtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|| || |||||||||||| ||||||| ||||||| |||||||| |||||||
Sbjct: 30667 tctcctgtcgaaatgtaggaatcctcaatgcagacattgctgcttgaatctg 30718
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggaga 1031
|||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 31075 ctgcaatacaccggatggatgttccaaaatggcgaatcctggaagacgacattggaga 31132
Score = 60.0 bits (30), Expect = 3e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1098 tccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||||||||||| ||||||||| ||| |||| ||||||||||| ||||
Sbjct: 31199 tccacatatcccaccacacgctgccttgcccatcaattgttccattctcacctg 31252
Score = 58.0 bits (29), Expect = 1e-005
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 308 gtcagttctgtgcacggggacggctgcacgtcgagagcgccaccgctgacagc 360
||||| |||| |||||| || |||||||| || ||||||||||||||||||||
Sbjct: 30121 gtcagctctgcgcacggcgatggctgcacatcaagagcgccaccgctgacagc 30173
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtggagc 942
|||||||||||||||| || || |||||||||||||||||
Sbjct: 30802 ctggatcaattccatcggtatttggggagtcatgtggagc 30841
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 599 gtcacatccgagacagtgatgttcctgatgaagccgcccctgcctgtgttggtcttgaca 658
||||| || ||||| |||||||| | |||||| || ||||| || | |||||||||||||
Sbjct: 30412 gtcacttctgagaccgtgatgtttcggatgaatcctccccttccggagttggtcttgaca 30471
Query: 659 tggat 663
|||||
Sbjct: 30472 tggat 30476
>gb|AACV01000128.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000128, whole
genome shotgun sequence
Length = 20753
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 794 ctggggcggccataggcgattccatactcatcccagccactcttgatggcgatggaatcg 853
||||| || ||| |||| || |||||||||||||||||||||||||||| ||| | ||
Sbjct: 9724 ctgggtcgcccaaaggctatgccatactcatcccagccactcttgatggagatcaagtca 9665
Query: 854 tcaccagtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|| || |||||||||||| ||||||| ||||||| |||||||| |||||||
Sbjct: 9664 tctcctgtcgaaatgtaggaatcctcaatgcagacattgctgcttgaatctg 9613
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggaga 1031
|||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 9256 ctgcaatacaccggatggatgttccaaaatggcgaatcctggaagacgacattggaga 9199
Score = 60.0 bits (30), Expect = 3e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1098 tccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||||||||||| ||||||||| ||| |||| ||||||||||| ||||
Sbjct: 9132 tccacatatcccaccacacgctgccttgcccatcaattgttccattctcacctg 9079
Score = 58.0 bits (29), Expect = 1e-005
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 308 gtcagttctgtgcacggggacggctgcacgtcgagagcgccaccgctgacagc 360
||||| |||| |||||| || |||||||| || ||||||||||||||||||||
Sbjct: 10210 gtcagctctgcgcacggcgatggctgcacatcaagagcgccaccgctgacagc 10158
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtggagc 942
|||||||||||||||| || || |||||||||||||||||
Sbjct: 9529 ctggatcaattccatcggtatttggggagtcatgtggagc 9490
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 599 gtcacatccgagacagtgatgttcctgatgaagccgcccctgcctgtgttggtcttgaca 658
||||| || ||||| |||||||| | |||||| || ||||| || | |||||||||||||
Sbjct: 9919 gtcacttctgagaccgtgatgtttcggatgaatcctccccttccggagttggtcttgaca 9860
Query: 659 tggat 663
|||||
Sbjct: 9859 tggat 9855
>ref|NT_107222.1| Oryza sativa (japonica cultivar-group)
Length = 1298239
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 794 ctggggcggccataggcgattccatactcatcccagccactcttgatggcgatggaatcg 853
||||| || ||| |||| || |||||||||||||||||||||||||||| ||| | ||
Sbjct: 655476 ctgggtcgcccaaaggctatgccatactcatcccagccactcttgatggagatcaagtca 655535
Query: 854 tcaccagtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|| || |||||||||||| ||||||| ||||||| |||||||| |||||||
Sbjct: 655536 tctcctgtcgaaatgtaggaatcctcaatgcagacattgctgcttgaatctg 655587
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggaga 1031
|||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 655944 ctgcaatacaccggatggatgttccaaaatggcgaatcctggaagacgacattggaga 656001
Score = 60.0 bits (30), Expect = 3e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1098 tccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||||||||||| ||||||||| ||| |||| ||||||||||| ||||
Sbjct: 656068 tccacatatcccaccacacgctgccttgcccatcaattgttccattctcacctg 656121
Score = 58.0 bits (29), Expect = 1e-005
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 308 gtcagttctgtgcacggggacggctgcacgtcgagagcgccaccgctgacagc 360
||||| |||| |||||| || |||||||| || ||||||||||||||||||||
Sbjct: 654990 gtcagctctgcgcacggcgatggctgcacatcaagagcgccaccgctgacagc 655042
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtggagc 942
|||||||||||||||| || || |||||||||||||||||
Sbjct: 655671 ctggatcaattccatcggtatttggggagtcatgtggagc 655710
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 599 gtcacatccgagacagtgatgttcctgatgaagccgcccctgcctgtgttggtcttgaca 658
||||| || ||||| |||||||| | |||||| || ||||| || | |||||||||||||
Sbjct: 655281 gtcacttctgagaccgtgatgtttcggatgaatcctccccttccggagttggtcttgaca 655340
Query: 659 tggat 663
|||||
Sbjct: 655341 tggat 655345
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 794 ctggggcggccataggcgattccatactcatcccagccactcttgatggcgatggaatcg 853
||||| || ||| |||| || |||||||||||||||||||||||||||| ||| | ||
Sbjct: 1656362 ctgggtcgcccaaaggctatgccatactcatcccagccactcttgatggagatcaagtca 1656421
Query: 854 tcaccagtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|| || |||||||||||| ||||||| ||||||| |||||||| |||||||
Sbjct: 1656422 tctcctgtcgaaatgtaggaatcctcaatgcagacattgctgcttgaatctg 1656473
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggaga 1031
|||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 1656830 ctgcaatacaccggatggatgttccaaaatggcgaatcctggaagacgacattggaga 1656887
Score = 60.0 bits (30), Expect = 3e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1098 tccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||||||||||| ||||||||| ||| |||| ||||||||||| ||||
Sbjct: 1656954 tccacatatcccaccacacgctgccttgcccatcaattgttccattctcacctg 1657007
Score = 58.0 bits (29), Expect = 1e-005
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 308 gtcagttctgtgcacggggacggctgcacgtcgagagcgccaccgctgacagc 360
||||| |||| |||||| || |||||||| || ||||||||||||||||||||
Sbjct: 1655876 gtcagctctgcgcacggcgatggctgcacatcaagagcgccaccgctgacagc 1655928
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtggagc 942
|||||||||||||||| || || |||||||||||||||||
Sbjct: 1656557 ctggatcaattccatcggtatttggggagtcatgtggagc 1656596
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 599 gtcacatccgagacagtgatgttcctgatgaagccgcccctgcctgtgttggtcttgaca 658
||||| || ||||| |||||||| | |||||| || ||||| || | |||||||||||||
Sbjct: 1656167 gtcacttctgagaccgtgatgtttcggatgaatcctccccttccggagttggtcttgaca 1656226
Query: 659 tggat 663
|||||
Sbjct: 1656227 tggat 1656231
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 794 ctggggcggccataggcgattccatactcatcccagccactcttgatggcgatggaatcg 853
||||| || ||| |||| || |||||||||||||||||||||||||||| ||| | ||
Sbjct: 29020552 ctgggtcgcccaaaggctatgccatactcatcccagccactcttgatggagatcaagtca 29020611
Query: 854 tcaccagtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|| || |||||||||||| ||||||| ||||||| |||||||| |||||||
Sbjct: 29020612 tctcctgtcgaaatgtaggaatcctcaatgcagacattgctgcttgaatctg 29020663
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaatggcgaatcctgaaagacgacattggaga 1031
|||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 29021020 ctgcaatacaccggatggatgttccaaaatggcgaatcctggaagacgacattggaga 29021077
Score = 60.0 bits (30), Expect = 3e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1098 tccacatatcccaccacgcgctgccttaaccaccaatagttccattctcgcctg 1151
||||||||||||||||| ||||||||| ||| |||| ||||||||||| ||||
Sbjct: 29021144 tccacatatcccaccacacgctgccttgcccatcaattgttccattctcacctg 29021197
Score = 58.0 bits (29), Expect = 1e-005
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 308 gtcagttctgtgcacggggacggctgcacgtcgagagcgccaccgctgacagc 360
||||| |||| |||||| || |||||||| || ||||||||||||||||||||
Sbjct: 29020066 gtcagctctgcgcacggcgatggctgcacatcaagagcgccaccgctgacagc 29020118
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtggagc 942
|||||||||||||||| || || |||||||||||||||||
Sbjct: 29020747 ctggatcaattccatcggtatttggggagtcatgtggagc 29020786
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 599 gtcacatccgagacagtgatgttcctgatgaagccgcccctgcctgtgttggtcttgaca 658
||||| || ||||| |||||||| | |||||| || ||||| || | |||||||||||||
Sbjct: 29020357 gtcacttctgagaccgtgatgtttcggatgaatcctccccttccggagttggtcttgaca 29020416
Query: 659 tggat 663
|||||
Sbjct: 29020417 tggat 29020421
>gb|CB650056.1|CB650056 OSJNEb14F01.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14F01 5', mRNA sequence
Length = 842
Score = 83.8 bits (42), Expect = 2e-013
Identities = 96/114 (84%)
Strand = Plus / Minus
Query: 889 gttgctgctggaatctggatcaattccatccgtgttgggggagtcatgtggagctaggat 948
|||| |||| ||||||||||||| |||||| |||||||| ||||||||||| || | |||
Sbjct: 834 gttggtgctagaatctggatcaactccatcggtgttgggcgagtcatgtggtgcgatgat 775
Query: 949 agtcacgtttctgatcacaacattgctgcaataaacaggatggatgttccagaa 1002
||| ||| | || || |||||| |||||||||||||||||||||||||||
Sbjct: 774 catcatgttggttatgaccacattgtcgcaataaacaggatggatgttccagaa 721
>gb|CB647765.1|CB647765 OSJNEb10N11.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10N11 3', mRNA sequence
Length = 759
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||||||||||||| || ||||||||||||
Sbjct: 586 gtgatgttcctgatgaagccgcccctcccaatgttggtcttga 628
>gb|CB650057.1|CB650057 OSJNEb14F01.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14F01 3', mRNA sequence
Length = 766
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||||||||||||| || ||||||||||||
Sbjct: 585 gtgatgttcctgatgaagccgcccctcccaatgttggtcttga 627
>dbj|AP003978.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1014_E11,
*** SEQUENCING IN PROGRESS ***
Length = 90275
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||||||||||||| || ||||||||||||
Sbjct: 20421 gtgatgttcctgatgaagccgcccctcccaatgttggtcttga 20379
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 806 taggcgattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaa 865
|||||||| || ||||| |||||||| ||||||||||| | | |||||| || || ||
Sbjct: 20229 taggcgatgccgtactcgtcccagccgctcttgatggccacgagatcgtcgccggttgag 20170
Query: 866 atgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|||||| | ||||||||||| | |||| |||| |||||||
Sbjct: 20169 atgtaggagtcctcgatgcatacgttggtgctagaatctg 20130
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 976 gcaataaacaggatggatgttccagaa 1002
|||||||||||||||||||||||||||
Sbjct: 19680 gcaataaacaggatggatgttccagaa 19654
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtgg 939
||||||||| |||||| |||||||| |||||||||||
Sbjct: 20003 ctggatcaactccatcggtgttgggcgagtcatgtgg 19967
>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0052K15
Length = 156250
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||||||||||||| || ||||||||||||
Sbjct: 135090 gtgatgttcctgatgaagccgcccctcccaatgttggtcttga 135048
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 806 taggcgattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaa 865
|||||||| || ||||| |||||||| ||||||||||| | | |||||| || || ||
Sbjct: 134898 taggcgatgccgtactcgtcccagccgctcttgatggccacgagatcgtcgccggttgag 134839
Query: 866 atgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|||||| | ||||||||||| | |||| |||| |||||||
Sbjct: 134838 atgtaggagtcctcgatgcatacgttggtgctagaatctg 134799
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 976 gcaataaacaggatggatgttccagaa 1002
|||||||||||||||||||||||||||
Sbjct: 134349 gcaataaacaggatggatgttccagaa 134323
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtgg 939
||||||||| |||||| |||||||| |||||||||||
Sbjct: 134672 ctggatcaactccatcggtgttgggcgagtcatgtgg 134636
>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0613F08
Length = 142937
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||||||||||||| || ||||||||||||
Sbjct: 41029 gtgatgttcctgatgaagccgcccctcccaatgttggtcttga 40987
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 806 taggcgattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaa 865
|||||||| || ||||| |||||||| ||||||||||| | | |||||| || || ||
Sbjct: 40837 taggcgatgccgtactcgtcccagccgctcttgatggccacgagatcgtcgccggttgag 40778
Query: 866 atgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|||||| | ||||||||||| | |||| |||| |||||||
Sbjct: 40777 atgtaggagtcctcgatgcatacgttggtgctagaatctg 40738
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 976 gcaataaacaggatggatgttccagaa 1002
|||||||||||||||||||||||||||
Sbjct: 40288 gcaataaacaggatggatgttccagaa 40262
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtgg 939
||||||||| |||||| |||||||| |||||||||||
Sbjct: 40611 ctggatcaactccatcggtgttgggcgagtcatgtgg 40575
>gb|AACV01003779.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003779, whole
genome shotgun sequence
Length = 33798
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||||||||||||| || ||||||||||||
Sbjct: 3285 gtgatgttcctgatgaagccgcccctcccaatgttggtcttga 3327
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Plus
Query: 806 taggcgattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaa 865
|||||||| || ||||| |||||||| ||||||||||| | | |||||| || || ||
Sbjct: 3477 taggcgatgccgtactcgtcccagccgctcttgatggccacgagatcgtcgccggttgag 3536
Query: 866 atgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|||||| | ||||||||||| | |||| |||| |||||||
Sbjct: 3537 atgtaggagtcctcgatgcatacgttggtgctagaatctg 3576
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 976 gcaataaacaggatggatgttccagaa 1002
|||||||||||||||||||||||||||
Sbjct: 4026 gcaataaacaggatggatgttccagaa 4052
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtgg 939
||||||||| |||||| |||||||| |||||||||||
Sbjct: 3703 ctggatcaactccatcggtgttgggcgagtcatgtgg 3739
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||||||||||||| || ||||||||||||
Sbjct: 2866393 gtgatgttcctgatgaagccgcccctcccaatgttggtcttga 2866351
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 806 taggcgattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaa 865
|||||||| || ||||| |||||||| ||||||||||| | | |||||| || || ||
Sbjct: 2866201 taggcgatgccgtactcgtcccagccgctcttgatggccacgagatcgtcgccggttgag 2866142
Query: 866 atgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|||||| | ||||||||||| | |||| |||| |||||||
Sbjct: 2866141 atgtaggagtcctcgatgcatacgttggtgctagaatctg 2866102
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 976 gcaataaacaggatggatgttccagaa 1002
|||||||||||||||||||||||||||
Sbjct: 2865652 gcaataaacaggatggatgttccagaa 2865626
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtgg 939
||||||||| |||||| |||||||| |||||||||||
Sbjct: 2865975 ctggatcaactccatcggtgttgggcgagtcatgtgg 2865939
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||||||||||||| || ||||||||||||
Sbjct: 8982325 gtgatgttcctgatgaagccgcccctcccaatgttggtcttga 8982283
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 806 taggcgattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaa 865
|||||||| || ||||| |||||||| ||||||||||| | | |||||| || || ||
Sbjct: 8982133 taggcgatgccgtactcgtcccagccgctcttgatggccacgagatcgtcgccggttgag 8982074
Query: 866 atgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|||||| | ||||||||||| | |||| |||| |||||||
Sbjct: 8982073 atgtaggagtcctcgatgcatacgttggtgctagaatctg 8982034
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 976 gcaataaacaggatggatgttccagaa 1002
|||||||||||||||||||||||||||
Sbjct: 8981584 gcaataaacaggatggatgttccagaa 8981558
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtgg 939
||||||||| |||||| |||||||| |||||||||||
Sbjct: 8981907 ctggatcaactccatcggtgttgggcgagtcatgtgg 8981871
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||||||||||||| || ||||||||||||
Sbjct: 8982325 gtgatgttcctgatgaagccgcccctcccaatgttggtcttga 8982283
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 806 taggcgattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaa 865
|||||||| || ||||| |||||||| ||||||||||| | | |||||| || || ||
Sbjct: 8982133 taggcgatgccgtactcgtcccagccgctcttgatggccacgagatcgtcgccggttgag 8982074
Query: 866 atgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|||||| | ||||||||||| | |||| |||| |||||||
Sbjct: 8982073 atgtaggagtcctcgatgcatacgttggtgctagaatctg 8982034
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 976 gcaataaacaggatggatgttccagaa 1002
|||||||||||||||||||||||||||
Sbjct: 8981584 gcaataaacaggatggatgttccagaa 8981558
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtgg 939
||||||||| |||||| |||||||| |||||||||||
Sbjct: 8981907 ctggatcaactccatcggtgttgggcgagtcatgtgg 8981871
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||||||||||||| || ||||||||||||
Sbjct: 8836011 gtgatgttcctgatgaagccgcccctcccaatgttggtcttga 8835969
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 806 taggcgattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaa 865
|||||||| || ||||| |||||||| ||||||||||| | | |||||| || || ||
Sbjct: 8835819 taggcgatgccgtactcgtcccagccgctcttgatggccacgagatcgtcgccggttgag 8835760
Query: 866 atgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|||||| | ||||||||||| | |||| |||| |||||||
Sbjct: 8835759 atgtaggagtcctcgatgcatacgttggtgctagaatctg 8835720
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 976 gcaataaacaggatggatgttccagaa 1002
|||||||||||||||||||||||||||
Sbjct: 8835270 gcaataaacaggatggatgttccagaa 8835244
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtgg 939
||||||||| |||||| |||||||| |||||||||||
Sbjct: 8835593 ctggatcaactccatcggtgttgggcgagtcatgtgg 8835557
>gb|CF308661.1|CF308661 ABF--02-J02.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-J02, mRNA sequence
Length = 601
Score = 58.0 bits (29), Expect = 1e-005
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 308 gtcagttctgtgcacggggacggctgcacgtcgagagcgccaccgctgacagc 360
||||| |||| |||||| || |||||||| || ||||||||||||||||||||
Sbjct: 121 gtcagctctgcgcacggcgatggctgcacatcaagagcgccaccgctgacagc 173
Score = 50.1 bits (25), Expect = 0.003
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 599 gtcacatccgagacagtgatgttcctgatgaagccgcccctgcctgtgttggtcttgaca 658
||||| || ||||| |||||||| | |||||| || ||||| || | |||||||||||||
Sbjct: 412 gtcacttctgagaccgtgatgtttcggatgaatcctccccttccggagttggtcttgaca 471
Query: 659 tggat 663
|||||
Sbjct: 472 tggat 476
>dbj|AP003993.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1101_F03,
*** SEQUENCING IN PROGRESS ***
Length = 116275
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 806 taggcgattccatactcatcccagccactcttgatggcgatggaatcgtcaccagtcgaa 865
|||||||| || ||||| |||||||| ||||||||||| | | |||||| || || ||
Sbjct: 94886 taggcgatgccgtactcgtcccagccgctcttgatggccacgagatcgtcgccggttgag 94827
Query: 866 atgtagcaatcctcgatgcagatgttgctgctggaatctg 905
|||||| | ||||||||||| | |||| |||| |||||||
Sbjct: 94826 atgtaggagtcctcgatgcatacgttggtgctagaatctg 94787
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 614 gtgatgttcctgatgaagccgcccctgcctgtgttggtcttga 656
|||||||||||||||| ||||||||| || ||||||||||||
Sbjct: 95078 gtgatgttcctgatgatgccgcccctcccaatgttggtcttga 95036
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 976 gcaataaacaggatggatgttccagaa 1002
|||||||||||||||||||||||||||
Sbjct: 94337 gcaataaacaggatggatgttccagaa 94311
Score = 50.1 bits (25), Expect = 0.003
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtcatgtgg 939
||||||||| |||||| |||||||| |||||||||||
Sbjct: 94660 ctggatcaactccatcggtgttgggcgagtcatgtgg 94624
>gb|CB647764.1|CB647764 OSJNEb10N11.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10N11 5', mRNA sequence
Length = 795
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 976 gcaataaacaggatggatgttccagaa 1002
|||||||||||||||||||||||||||
Sbjct: 747 gcaataaacaggatggatgttccagaa 721
>gb|AACV01010193.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010193, whole
genome shotgun sequence
Length = 32641
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 233 tagcagcagctcaggctcagct 254
||||||||||||||||||||||
Sbjct: 7071 tagcagcagctcaggctcagct 7050
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 233 tagcagcagctcaggctcagct 254
||||||||||||||||||||||
Sbjct: 550683 tagcagcagctcaggctcagct 550662
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 233 tagcagcagctcaggctcagct 254
||||||||||||||||||||||
Sbjct: 4603649 tagcagcagctcaggctcagct 4603628
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 233 tagcagcagctcaggctcagct 254
||||||||||||||||||||||
Sbjct: 23747748 tagcagcagctcaggctcagct 23747727
>emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020O11,
complete sequence
Length = 113677
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 233 tagcagcagctcaggctcagct 254
||||||||||||||||||||||
Sbjct: 9100 tagcagcagctcaggctcagct 9121
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 233 tagcagcagctcaggctcagct 254
||||||||||||||||||||||
Sbjct: 26774095 tagcagcagctcaggctcagct 26774074
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,383,557
Number of Sequences: 438736
Number of extensions: 1383557
Number of successful extensions: 7556
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7232
Number of HSP's gapped (non-prelim): 314
length of query: 1179
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1158
effective length of database: 2,791,206,460
effective search space: 3232217080680
effective search space used: 3232217080680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)